--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Dec 10 13:37:26 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/443/zfh2-PA/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -19328.36 -19338.04 2 -19328.37 -19337.83 -------------------------------------- TOTAL -19328.37 -19337.94 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/443/zfh2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.192081 0.000064 0.176493 0.207238 0.191815 1396.52 1448.76 1.000 r(A<->C){all} 0.083195 0.000063 0.067956 0.098808 0.082950 1292.88 1396.94 1.000 r(A<->G){all} 0.272890 0.000224 0.245132 0.302959 0.272397 1241.14 1283.57 1.000 r(A<->T){all} 0.107482 0.000084 0.090202 0.125933 0.107150 1304.12 1402.56 1.000 r(C<->G){all} 0.074142 0.000080 0.057654 0.092547 0.073774 971.85 1004.71 1.000 r(C<->T){all} 0.348941 0.000277 0.317092 0.382405 0.348303 943.91 1049.80 1.000 r(G<->T){all} 0.113350 0.000127 0.092111 0.135803 0.112971 1036.32 1118.30 1.000 pi(A){all} 0.316168 0.000023 0.307094 0.325531 0.316217 1124.43 1171.89 1.000 pi(C){all} 0.247230 0.000019 0.238830 0.255861 0.247137 881.52 1137.05 1.000 pi(G){all} 0.206083 0.000017 0.197681 0.213915 0.206138 836.93 888.56 1.000 pi(T){all} 0.230519 0.000018 0.222830 0.239064 0.230512 1032.08 1085.00 1.000 alpha{1,2} 0.051572 0.001300 0.000142 0.117756 0.046256 1115.97 1274.60 1.000 alpha{3} 3.261378 0.884929 1.579835 5.105414 3.127914 1106.55 1303.77 1.000 pinvar{all} 0.141095 0.004194 0.006814 0.250225 0.141767 1270.37 1385.68 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -18614.00028 Model 2: PositiveSelection -18614.00028 Model 0: one-ratio -18624.452738 Model 3: discrete -18613.995362 Model 7: beta -18614.345931 Model 8: beta&w>1 -18614.020012 Model 0 vs 1 20.904915999999503 Model 2 vs 1 0.0 Model 8 vs 7 0.6518379999979516
>C1 MSSFDVETFNGKIVYNLDGSAHIIATDNTNGGGSGSGQNCYGSTTNSLKN LSKDKGRGQEEKDIEHPSQYHREQSDNKRQEEAVDNRPGVESLGSACYKS SPKIHSFRVVSAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLANNDASA DTNDTEKLQTATEGSDATLPSSPQPVFRNVSELEPENKQETEQNRLLNQD REQEPESDQHTSSSKMAAPSAYIPLSSPKVAGKLTVKFGSLNSATAKTNN LSKVSSTSSPPSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE MKIGSMSTSPQTNDSDVPCSGFLQMQHMTTGGAYTPQVSSFHASLAALAA NESNDNRVKLITEFLQQQLQQHQSSLFPSPCPDHPDLNGVDCKTCELLDI QQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPHRSPCSNSVALPVSPSASS VASVGNASTATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGVQM STRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQHPR LARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSSQN MVAAAAAAAVTGKLLLSSSSPQVTAACPSNSGSGAGSGSSNIVGGTASLS GNATPSVTGANSSNANAGSNTNNAGTKPKPSFRCDICSYDTSVARNLRIH MTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSGTGNIASHSSGSFMPEVA LADLAYNQALMIQLLHQQQQHQQSANTKLSPSSSPVSTPDQFSFSPKPIK LNHGTGAAMGIGMAMGMGMSHSNEVSCELSGDPHPLTKTDKWPMAFYSCL VCDCYSTNNLDDLNQHLLLDRSRQSSSASSEIMVIHNNNYICRLCNYKTN LKANFQLHSKTDKHLQKLNFINHIREGGPQNEYKMQYQQQQLAANVVQLK CNCCDFHTNSIQKLSLHTQQMRHDTMRMIFQHLLYIVQQSEMHNKSSGSA EDDPQCACPDEDQQLQLQSSKKLLLCQLCNFTAQNIHEMVQHVKGIRHLQ VEQFICLQRRSENQEIPALNEVFKVTEWVMENEDVSLAPGLNLARTTTND ATTDASYAAASSAAVPAIPDVSMFSPTSPSSCATSCDKNLSQIVLPNVNN LGSGVPTTVFKCNLCEYFVQSKSEIAAHIETEHSCAESDEFITIPTNTAA LQAFQTAVAAAALAAVHQRCAVINPPTQDTVDEDKDLDTNVSDGPVGIKQ ERLEQEVDRTTSMDVTKDLASQATDFGAPESPKVAETEVGVQCPLCLENH FREKQYLEDHLTSVHSVTRDGLSRLLLLVDQKALKKESTDIACPTDKAPY ANTNALERAPTPIENTCNVSLIKSTSANPSQSVSLQGLSCQQCEASFKHE EQLLKHAQQNQHFSLQNGEYLCLAASHISRPCFMTFRTIPTMISHFQDLH MSLIISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDATKCSFCQRNF RSTQALQKHMEQAHAEDGTPSTRTNSPQTPMLSTEETHKHLLAESHAVER EVSGSDVSPIELETHLNKETRHLSPTPMSLDSQSHQKHLATFAALLKQQQ CNSDAGGLHPEALSMSTGEMPPQLQGLQNLQHIQQHFGAVAAAAGLPINP VDMLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSGPSALNNSITTSTA TSASGLGDTHLTSGVSSIPVDSGKATAVPPQTQLNANANSQQLASNQKRA RTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTLF KERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLNDTCSVAVTGPMT SSTISLPPSGNINLSSKENATSKVLAAGKANASGPVTFSATVPVSTPLSR PESTNSSGNISDYIGNNIFFGQLGSKEQILPYSLDGQIKSEPQDDMIGAT DFAYQTKQHSSFSFLKQQQDLVDPPEQCLTNQNADTAQDQSLLAGSSLAS NCQSQQQINIFETKSESGSSDVLSRPPSPNSGAAGNVYGSMNDLLNQQLE NMGSNMGPPKKMQIVGKTFEKNVAPMVTSGSVSTQFESNSSNSSSSSSST SGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVV WFQNARQKQRKIYENQPNNTLFENEETKKQNINYACKKCNLVFQRYYELI RHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSMDIHHVGICPPG SAVASHTLSTPGSAAPLPGQYTQHSFGALPSPQHLFAKSSSLTDFSPSTT PTPPQRERSNSLDQIQRPPKFDCDKCELNFNQLEKLREHQLLHLMNPGNI CSDVGQNSNPEANFGPFGSILQSLQQAAAQQQQQHHQQPPTKKRKYSDCS SNADEMQSLSELEASQKKHEYLYKYFMQNETSQEVKQQFLMQQQQKKLEQ GNECDFELDFLTNFYQQNELKKVSNYDFLLQYYRTHEEAKSSQQHTFSSS KKPTIEFLLQYYQLNESKKFFQLVASPQIIPDVPGYKPSLRIPKSTSDEA PYIGETSLEQATELQREKQDEQLRIDRPSEENDLSMNKNKVENINNNNIN VDQSNLTETNGGVPSVETKEECTQESSLIAMDDENKYLCTRSKQKDDKEK SHYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDELTQNSNAIEKRSSV SPVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSRKMLEEISKKVNLK KRVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSSGKEVYSDLRSNGI TVDTDLETNLQDCQLCQVTQVNIRKHAFSVEHISKMKKLLEQTTELYAQS NGSGSEDNDSDREKRFYNLSKAFLLQHVVTNATSHAIHTARQDSDVIAEG NCILNYDTNGGDSKSHVQHNLPNEVVSEDARKIAGNQELMQQLFNRNHIT VIGGK >C2 MSSSDVETFNGKIVYNLDGSAHIIATDNTNGGGSGSGQNCYGSASNSLKN LSKAKDRRQEEIDIEHPSQYHLEQSENERQEEAVDTRPGFESLGGACHKS SPKIHSFRVVSAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLGNNDASA DSNDTEKLQTATEGSDATLPSSPHPVIRNDSELEPENKQETEQNRLLNQD REQESESDQHTSSSKMAAPSAYIPLSSPKVAGKLTVKFGSLNSATAKTNN LSKVSSTSSPPSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE MKIGSMSTSPQTNDSDVPCSGFLQMQHMTTGGAYTPQVSSFHASLAALAA NESNDNRVKLITEFLQQQLQQHQSSLFPSPCPDHPDLNGVDCKTCELLDI QQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPHRSPCSNSVTLAVSPSASS VASAGNASTATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGVQM STRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQHPR LARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSSQN MVAAAAAAAVTGKLLLSSSSPQVTAAGSSNSGSGAGSGSSNIVGGTTSLS GSATPSATGANSSNANAGSNTNNAGTKPKPSFRCDICSYDTSVARNLRIH MTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSGTGNIAGHSSGSFMPEVA LADLAYNQALMIQLLHQQQQHQQSANTKLSPSSSPVSTPDQFSFSPKPIK LNHGTGAAMGIGMAMGMGMSHSNEVSGELSGDPHPLTKTEKWPTAFYSCL ICDCFSTNNLDDLNQHLLLDRSRQSSSASSEIMVIHNNNYICRLCNYKTN LKANFQLHSKTDKHLQKLNFINHIREGGPRNEYKMQYQQQLAANVVQLKC NCCDFHTNSIQKLGLHTQQMRHDTMRMIFQHLLYIVQQSEMHNKSSGSAE DDPQCACPDEDQQVQLQSSKKLLLCQLCNFTAQNIHEMVQHVKGIRHLQV EQFICLQRRSENQEIPALNEVFKVTEWVMENEDVSFASGLNLARTATNDA TDASYAAASSAAAPAIPDVSMFSPTSPSSCATSCDKNLSQIVSPNVNKLG SGVPTTVFKCNLCEYFVQSKSEIASHIETEHSCAESDEFITIPTNTAALQ AFQTAVAAAALAAVHQRCAVINPPIQETVDEDKDLDTNVSDAPLGIKQER VEQEVDRTTSMEDIKDLASQATESGAPESPKVAETEVGVQCPLCLENHFR EKQYLEDHLTSVHSVTRDGLSRLLLLVDQKALKKESTDIACPTDKAPYAN TNAPERAPSPIENTCNVSLIKSTSANPSQSVSLQGLSCQQCEASFKHEEQ LLKHAQQNQHFPLQNGEYLCLAASHVSRPCFMSFRTIPAMISHFQDMHIS LIISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDATKCSFCQRNFRS TQALQKHMEQAHAEDGTPSTRTNSPQTPMLSTEETNKHLLAESHAGEREV SGSDVSPIELEAHLNKETRHLSPTPMSLDSQSHQQYLATFAALLKQQQCN SDAVGLHPETLSMSTGEMPPQLQGLQNLQHIQQHFGAVAAASGLPINPVD MLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSGSSAQNNSITTATATS ASGLGDTHLTTGVSSLPVDSGKATAVPPQTQLNANANSQQLASNQKRART RITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTLFKE RQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLNDTCSVAVTGPMTSS TISLPPSGSTNLSSKENATSKVLAAGKANASGPVTFTATVPVSTPLSRPE STNSSGNISDYIGNNIFFGQLGSKDQILPYSLDGQIKSEPQDDVIGATDF AYQTKQHSNFSFLKQQQDLVDPPEQCLTNQNADTVQDQSLLAGAALASNC QSQQQINIFETKSESGSSDVLSRPPSPNSGAAGNMYGSMNDLINQQLENM GSNMGPPKKMQIVGKTFEKNVAPMVTSGSVSTQFESNSSNSSSSSSSTSG GKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVVWF QNARQKQRKIYENQPNNTLFENEETKKQNINYACKKCNLVFQRYYELIRH QKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSMDIHHVGICPPGSA VVSQTLSTPGSAAPLSGQYTQHSFGALPSPQHLFAKSSSLTDFSPSTTPT PPQRERSNSLDHPQRPPKFDCDKCELKFNQSEKLREHQLLHLMNPGNIFS DASQNSNPEANFGPFGSILQSLQQAAAQQQQLQHQPPPTKKRKYSDCSSN ADEMQSLSELEASQKKHEFLYKYFMQNETSQEVKQQFLMQQQQKKLEQGN DCDFELDFLTNFYQQSELKKVSNYDFLLQYYRTHEEAKSSQQHLFSSSKK PTIEFLLQYYQLNESKKFFQLVASPQIIPDVPGYKPSSRMPKSTSDEAPY IGETSLEQATELQREKQDEQLRIDRPSEENELSMNKNKVENINNNNIGIH VGQSNLTATNGIPSVETKDESTQESSLIAIDNENKYLCARSKQKDDKEKS HYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDELTQNSNAIEKRSSVS PVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSRKMLEEISKKVNLKK RVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSSGKEAYSDLRSNGIT VDTDLETNLQDCQLCQVTQVNIRKHAFSVEHISKMKKLLEQTTELYAQSN GSGSEDNDSDREKRFYNLSKAFLFQHVVTNATSHSIHTARQDSDAIAEGN CMLNYDTNGGDSKSHVQHNLPNEVVSEDTRKIAGNQELMQQLFNRNHITV IGGKo >C3 MSSSDVETFDGKIVYNLDGSAYIIATDNANVGRSGSGQICYASTSDSLKN LSKGKDRGQGENEIEHPPLEQSENKRQEEDESSVGASYKSSPKIHSFRVV SAQDANSTCQEQIRAFKIQKPILMCFICKLSFGNVKSFSLHANTEHRLNL EELDQQLLNREYSSAIIQRNMDEKPQISFLQPLGKDASTDSNDTEKLQTA TEGSDQALPLSPQPVISNDSELEPENKQETEQNPPLNEDREQESETDQYT SSNKMAAPSAYLPLSSPKVAGKLTVKFGSLNSATAKTNNLSKVSSTSSPT STYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVEMKIGSMSTSPQ TNDSDVPCSGFSQLQHMTTGGVYTPQVSSFHASLAALAANESNENRVKVI TEFLQQQLQQHQHQSSLFPSPCPDHPDLKSMDCKTCELFDIQQRSKSPSS SHHQISQSLPQLQIQSQPQQTPHRSPCSNSVTLAISPSTSSVASAGNASS ATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGVQMSTRNSCKTL KCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQHPRLARGESYSC GYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSSQNMVAAAAAAA ATGKLLLSPQVTAAGPSNSGSGASSGSSNIVGSNASLSGNATPAATGANS SNATAGISTNSGGTKPKPSFRCDICSYETSVARNLRIHMTSEKHTHNMAV LQNNIKHIQAFNFLQQQQQSVTGNIAGHSSGSFMPEVALADLAYNQALMI QLLHQQQQQQHQQTANTKLSPSSSPVSTTDQFSFSPKPMKLSHGTGACLG LGMAMGMSHLNEVPGDLSGDPHPLTKTDKWPTAFYSCLICDCFSTNNLDD MNQHLLVDRSRQSSSASSEIMVIHNNNYICRLCNYKTNLKANFQLHSKTD KHLQKLNFINHIREGGPRNEYKMQYQQQLAANVVQLKCNCCDFHTNSIQK LGLHTQQMRHDTMRMIFQHLLYIVQQSEMHNKSSGSAEDDPQCSCPDEDQ QLQSSKKLLLCQLCNVTATNLHEMVQHVKGMRHMQVEQFICLQRRSENQE IPALNEVFKVTEWIMDNEDVSFASGLNLARATTNDATTDTSYAEASSAAG VPAIPDVSMFSPTSPSSCATSCDKNLSQIVSPSVNNLDAGVPTTVFKCNL CEYFVQSKSDIASHIETEHSCAESDEFISIPTNTAALQAFQTAVAAAALA AVHQRCAAINPPTVEEDKDLDTNVSDGPVAVKQEPVEQEVNRMTSMEETK DLVSQVTESAAQESPKVSESQVGVQCPLCLENHFREKQYLEAHLTSVHSV TRDGLSRLLLLVDQKAWKKENENTDIACPSAKAPFAKTNTLERAPTSIEN TCNVSPTKSISANLSLSVGLQGLFCHQCEASFKHEEQLLQHAQQNQHFPL QNGEYLCLATSHISRPCFMSFRTIPAMVSHFQDSHMSLVISERHVYKYRC KQCSLAFKTQEKLTTHMLYHTMRDATKCSLCQRNFRSTQALQKHMEQAHA EEVTPSTRTNSPQTPVLNTEETHKHFPSESHAVEREVSVSDVSPLQLESQ LNKETRQLSPTPISLDSQSHQQYLATFAALLKQQQCNSDTGALHPEVLSI SAGEVSHHLQGLQNLQHMQQQFGAVAAASGLSINPVDMLNIMQFHHLMSL NFMNLAPPLVFGANAAGNAVSPSSAQNNSIKTSTASSALVLGDTQILTSG VSSLPVDSVKAITVPAQTQLTVNASSQQLASNQKRARTRITDDQLKILRA HFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTLFKERQRNKDSPYNFN NPPSTTLNIEEYERTGQAKVTPLNDTSRVAVTAPITASTILLAPSGNANL ISKESPTTKVLAAGKVIATGPATLSTTVAVSMPVSRPESTTSSGNISDYL GNNIFFGQPGGKDQVLPCSVDGQIKSEPQDDMIGANDSAYQTKQHPTFSF LKHQQELTDPPEQCLTNQNADTVQDQSLLAGSALASHCQNQQQINIFETK SESGSSDVMSRPPSPSSGAAGNIYGSMNDLINQQLENMGSNMGPPKNLQT VGKTFEKNAAPMPTSGSISAQFESNSSNSSSSSSSTSGGKRANRTRFTDY QIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVVWFQNARQKQRKIYE NQPNNTLFENEETKKQNINYACKKCNLVFQRYYELIRHQKNHCFKEENNK KSAKAQIAAAQIAQNLSSEDSNSSMDIHHGGIGQPGTAVVSQTLSTPGSA ASLPGQYAQHSFGALPSPQHLFAKSSSLTDFSPSTTPTPPQRERSNSLDH PQRPPKFDCDKCDLKFNHLEKLREHQLLHLMNQGNIFSDAGQNTNPEAHF GPFGSILQSLQQAAAQQQQPHHQPPPTKKRKYSDCSSNADEMQSLSEIEV SHKKHEFLYKYFMQNETSSELKQQFLMQQQHKKVEQGNESEFELDFLTNF YQQSELKKVSNYDFLLSYYRTHEESKSSPQHIFSSSKKPTIEFLLQYYQL NESKKFFQLVASPQIIPDLPGYKPSSRMPKPASDEAPNIGETSLEQATKL QREEQLRIDRPSEENDLSITKNKVENINNNNISINEGQNDLTETNGSPSG ETKEEFPQESSLIETDNDNKYLCTRSKQKNEKEKSQYLHNLEDFLDATMI ENNSQTLTFNDDEKACQKDEPIQNSNEMEQRSSVSPVNVSSKQNKRLRTT ILPEQLNFLYECYQSESNPSRKMLEEISKKVNLKKRVVQVWFQNSRAKDK KSRNQRHYAHISDDNSYDGSSGKEVVSDLRSNGVAVETDHETNLQDCQLC QVTQVNIRKHAFSVEHICKMKKLLEQTTELYAQSNGSGSDDNDSDREKRF YNLSKAFLLQHVVSNATSHAIHTPRQDPDAIAEGNCVLTYETNGGDSKGH IHHNLPNEAVPEDAGKIASNQELMQQLFNRNHITVIGGKooooooooooo ooooo >C4 MSSSDVETFNGKIVYNLDGSAYIIATDNANGCGSGSGQICYASTSNSLIN LPTAKDRGQGEKEIEHPPQYHLEQSENKRQEKAVHTRPGVESLGGASYKS SPKIHSFRVVTAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLANDNASA DSDDTEKLQTAIEGSDATLPPSPQPVITNDSELEPENKQETEQNQLVNQD REQESETDQHTSNSKMAAPSAYLPLSSPKIAGKLTVKFGSLNSATAKTNN LSKVSSTSSPSSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE MKIGSMSTSPQTNDSDVPCSGFLQLQHMTTGGVYTPQVSSFHSSLAALAA NESNENRVKLITEFLQQQLQQHQSSLFPSPCPDHPDLKGMDCKTCELLDI QQRSKSPSSSHHQFSQSLPQLQIQSQSQQTPHRSPCSNSVTLAISPSTSS VASAGNASSATSSFTIGACSDHINGRPQGVDCARCEMLLNSARLNSGVQM STRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQHPR LARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSSQN MVAAAAAAAATGKLLLSSSPQVPAAGPSNSGSGAGSCSSNIVGGNASLSG NATPAATGANSSNANTGSSTNNAGTKPKPSFRCDICSYETSVARNLRIHM TSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSVAGNIAGHSSGSFMPEVAL ADLAYNQALMIQLLHQQQQQQQHQQTANTKLSPSSSPVSTTDQFTFSPKP MKLSHGTGAGASLGLGMAMGMGMSHSNEVPGDLSGDPHPLTKTDKWPTAF YSCLICDCFSTNNLDDMNQHLLVDRSRQSSSSSSEVMVIHNNNYICRLCN YKTNLKANFQLHSKTDKHLQKLNFINHIREGGPRNEYKMQYQQQLATNVV QLKCNCCDFHTNSIQKLGLHTQQMRHDTMRMIFQHLLYIVQQSEMHNKSS GSAEDDPQCSCPDEDQQLQSSKKLLLCQLCNVTATNLHEMVQHVKGMRHM QVEQFICLQRRSENQEIPALNEVFKVTEWIMDNEDVSFASGLNLARATTN DATSDASYAEASSAAGAPAIPDVNMFSPTSPSSCATSCDKNVSQIISPSV NNLGSGVPTTVFKCNLCEYFVQSKSDIASHIETEHSCAEGDEFISIPTNT AALQAFQTAVAAAALAAVHQRCAAINPPTVEEDKDIDTNVSDGPVAIKQE RIEQEVDRMTSMEETKDLASQATESAAPKSSKAIEAQIGVQCPLCLENHF REKQYLEAHLTSVHSVTKDGLSRLLLLVDQKAWKKESESTDLPCLSAKTP YANTNALERSPTPTENTSNISQIKSTSANPNLPVALQGLSCHQCEASFKH EEQLLQHAQQNQHYPLQNGEYLCLATSHISRPCFMSFRTIAAMVSHFQDS HMSLVISERHVYKYRCKQCSLAFKTQEKLTTHMLYHTMRDATKCSLCQRN FRSTQALQKHMDQAHAEEVTPSTRTNSPHTPILNTEETQQHLPSESHGVE RAVAVNDVSQLELEMQLNKETRQLSPTPMSLDPQSHQQYLATFAALLKQQ QCNPDAGGLHPEALSMSAGELSHHLQGLQNLQHMQQQFGAVAAASGLSIN PVDMLNIMQFHHLMSLNFMNLAPPLVFGANATGNALSASSAQNNSITNST ATSALGLGDTHLTSGVSSLPVDSVKATTVPAQTQLTVNANSQQLASNQKR ARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMKVVKHWFRNTL FKERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLNDTCSVAVTAPM SASTISLPPSGNTNLISKENSTTKVLAAGKVLATGPVTFPATVPVSTPVS RPESTNSSGNISDYLGNNIFFGQPGGKDQVLPYSVDGQIKSEPQDDMIGA NDSAYQTKPHSNFSFLRHQQDLADPPEQGLTNQNADTVQDQSLLAGSALA SHCQSQQQINIFETKSESGSSDVMSRPPSPSCGATGNIYGSMNDLINQQL ENMGSNMGPPKNLQIIGKTFEKNVAPVATTGSASTQFESNSSNSSSSSSS TSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIV VWFQNARQKQRKIYENQPNNSLFENEETKKQNINYACKKCNLVFQRYYEL IRHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSIDIHHVGICPP GSAVVSQTLSTPGSAAPLPGQYAQHSFGALPSPQHLFAKSSSLTDFSPST TPTPPHRERSNSLDHPQRPPKFDCDKCDLKFSHLEKLREHQLLHLMNQGS IFSDAGQSSNPDANFGPFGSILQSLQQAAAQQKQPHHQPPPTKKRKYSDC SSNADEMQSLSEHEVSQKKHEFLYKYFMQNETSPEVKKQFLMQQQHKKLE QGNESDFELDFLTNFYQQSELKKVSSYDYLLQYYRTHEEAKSSQQQIFSS SKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDLPGYKPSSGLQKPESDD GPNIGETSLEQATELQREEHLCVDRPSAKNDLSMNKNKVENINNNNISIS VGQSDSTETNGSPSGETKEEFPQEPSLIAIDDDNKYLCTTSKQNDEKEKS QYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDEPIQNSNEMEKRSSVS PVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSRKMLEEISKKVNLKK RVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSSGKDVASDPKSNGVN GVDTDHETNLQDCQLCQVSQVNIRKHAFSVEHICKMKKLLDQTTELYAQS NGSGSDDNESDREKRFYNLSKAFLFQHVVSNATSHAIHAPRQDSDAIAEG NCMLTYDTNGGDSKSQIQHNLPNEVVPEDARKIASNQELMQQLFNRNHLT VIGGK CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=4, Len=3035 C1 MSSFDVETFNGKIVYNLDGSAHIIATDNTNGGGSGSGQNCYGSTTNSLKN C2 MSSSDVETFNGKIVYNLDGSAHIIATDNTNGGGSGSGQNCYGSASNSLKN C3 MSSSDVETFDGKIVYNLDGSAYIIATDNANVGRSGSGQICYASTSDSLKN C4 MSSSDVETFNGKIVYNLDGSAYIIATDNANGCGSGSGQICYASTSNSLIN *** *****:***********:******:* ***** **.*:::** * C1 LSKDKGRGQEEKDIEHPSQYHREQSDNKRQEEAVDNRPGVESLGSACYKS C2 LSKAKDRRQEEIDIEHPSQYHLEQSENERQEEAVDTRPGFESLGGACHKS C3 LSKGKDRGQGENEIEHPP---LEQSENKRQE-------EDESSVGASYKS C4 LPTAKDRGQGEKEIEHPPQYHLEQSENKRQEKAVHTRPGVESLGGASYKS *.. *.* * * :****. ***:*:*** ** .*.:** C1 SPKIHSFRVVSAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL C2 SPKIHSFRVVSAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL C3 SPKIHSFRVVSAQDANSTCQEQIRAFKIQKPILMCFICKLSFGNVKSFSL C4 SPKIHSFRVVTAQDANSTCQDQIRAFKIQKPILMCFICKLSFGNVKSFSL **********:*********:***************************** C1 HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLANNDASA C2 HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLGNNDASA C3 HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLGKD-AST C4 HANTEHRLNLEELDQQLLNREYSSAIIQRNMDEKPQISFLQPLANDNASA *******************************************.:: **: C1 DTNDTEKLQTATEGSDATLPSSPQPVFRNVSELEPENKQETEQNRLLNQD C2 DSNDTEKLQTATEGSDATLPSSPHPVIRNDSELEPENKQETEQNRLLNQD C3 DSNDTEKLQTATEGSDQALPLSPQPVISNDSELEPENKQETEQNPPLNED C4 DSDDTEKLQTAIEGSDATLPPSPQPVITNDSELEPENKQETEQNQLVNQD *::******** **** :** **:**: * ************** :*:* C1 REQEPESDQHTSSSKMAAPSAYIPLSSPKVAGKLTVKFGSLNSATAKTNN C2 REQESESDQHTSSSKMAAPSAYIPLSSPKVAGKLTVKFGSLNSATAKTNN C3 REQESETDQYTSSNKMAAPSAYLPLSSPKVAGKLTVKFGSLNSATAKTNN C4 REQESETDQHTSNSKMAAPSAYLPLSSPKIAGKLTVKFGSLNSATAKTNN ****.*:**:**..********:******:******************** C1 LSKVSSTSSPPSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE C2 LSKVSSTSSPPSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE C3 LSKVSSTSSPTSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE C4 LSKVSSTSSPSSTYASGEVLSPSTDNISNHKSTHCNQETEPPSSSSSEVE **********.*************************************** C1 MKIGSMSTSPQTNDSDVPCSGFLQMQHMTTGGAYTPQVSSFHASLAALAA C2 MKIGSMSTSPQTNDSDVPCSGFLQMQHMTTGGAYTPQVSSFHASLAALAA C3 MKIGSMSTSPQTNDSDVPCSGFSQLQHMTTGGVYTPQVSSFHASLAALAA C4 MKIGSMSTSPQTNDSDVPCSGFLQLQHMTTGGVYTPQVSSFHSSLAALAA ********************** *:*******.*********:******* C1 NESNDNRVKLITEFLQQQLQQHQ--SSLFPSPCPDHPDLNGVDCKTCELL C2 NESNDNRVKLITEFLQQQLQQHQ--SSLFPSPCPDHPDLNGVDCKTCELL C3 NESNENRVKVITEFLQQQLQQHQHQSSLFPSPCPDHPDLKSMDCKTCELF C4 NESNENRVKLITEFLQQQLQQHQ--SSLFPSPCPDHPDLKGMDCKTCELL ****:****:************* **************:.:*******: C1 DIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPHRSPCSNSVALPVSPSA C2 DIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPHRSPCSNSVTLAVSPSA C3 DIQQRSKSPSSSHHQISQSLPQLQIQSQPQQTPHRSPCSNSVTLAISPST C4 DIQQRSKSPSSSHHQFSQSLPQLQIQSQSQQTPHRSPCSNSVTLAISPST ***************:************.*************:*.:***: C1 SSVASVGNASTATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGV C2 SSVASAGNASTATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGV C3 SSVASAGNASSATSSFTIGACSEHINGRPQGVDCARCEMLLNSARLNSGV C4 SSVASAGNASSATSSFTIGACSDHINGRPQGVDCARCEMLLNSARLNSGV *****.****:***********:*************************** C1 QMSTRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQH C2 QMSTRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQH C3 QMSTRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQH C4 QMSTRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACGYCLAGQQH ************************************************** C1 PRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSS C2 PRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSS C3 PRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSS C4 PRLARGESYSCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNMQELNSS ************************************************** C1 QNMVAAAAAAAVTGKLLLSSSSPQVTAACPSNSGSGAGSGSSNIVGGTAS C2 QNMVAAAAAAAVTGKLLLSSSSPQVTAAGSSNSGSGAGSGSSNIVGGTTS C3 QNMVAAAAAAAATGKLLLS---PQVTAAGPSNSGSGASSGSSNIVGSNAS C4 QNMVAAAAAAAATGKLLLSSS-PQVPAAGPSNSGSGAGSCSSNIVGGNAS ***********.******* ***.** .*******.* ******..:* C1 LSGNATPSVTGANSSNANAGSNTNNAGTKPKPSFRCDICSYDTSVARNLR C2 LSGSATPSATGANSSNANAGSNTNNAGTKPKPSFRCDICSYDTSVARNLR C3 LSGNATPAATGANSSNATAGISTNSGGTKPKPSFRCDICSYETSVARNLR C4 LSGNATPAATGANSSNANTGSSTNNAGTKPKPSFRCDICSYETSVARNLR ***.***:.********.:* .**..***************:******** C1 IHMTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSGTGNIASHSSGSFMPE C2 IHMTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSGTGNIAGHSSGSFMPE C3 IHMTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSVTGNIAGHSSGSFMPE C4 IHMTSEKHTHNMAVLQNNIKHIQAFNFLQQQQQSVAGNIAGHSSGSFMPE ********************************** :****.********* C1 VALADLAYNQALMIQLLHQQ---QQHQQSANTKLSPSSSPVSTPDQFSFS C2 VALADLAYNQALMIQLLHQQ---QQHQQSANTKLSPSSSPVSTPDQFSFS C3 VALADLAYNQALMIQLLHQQQQQQ-HQQTANTKLSPSSSPVSTTDQFSFS C4 VALADLAYNQALMIQLLHQQQQQQQHQQTANTKLSPSSSPVSTTDQFTFS ******************** * ***:**************.***:** C1 PKPIKLNHGT--GAAMGIGMAMGMGMSHSNEVSCELSGDPHPLTKTDKWP C2 PKPIKLNHGT--GAAMGIGMAMGMGMSHSNEVSGELSGDPHPLTKTEKWP C3 PKPMKLSHGT--GACLGLGMAMGM--SHLNEVPGDLSGDPHPLTKTDKWP C4 PKPMKLSHGTGAGASLGLGMAMGMGMSHSNEVPGDLSGDPHPLTKTDKWP ***:**.*** **.:*:****** ** ***. :***********:*** C1 MAFYSCLVCDCYSTNNLDDLNQHLLLDRSRQSSSASSEIMVIHNNNYICR C2 TAFYSCLICDCFSTNNLDDLNQHLLLDRSRQSSSASSEIMVIHNNNYICR C3 TAFYSCLICDCFSTNNLDDMNQHLLVDRSRQSSSASSEIMVIHNNNYICR C4 TAFYSCLICDCFSTNNLDDMNQHLLVDRSRQSSSSSSEVMVIHNNNYICR ******:***:*******:*****:********:***:*********** C1 LCNYKTNLKANFQLHSKTDKHLQKLNFINHIREGGPQNEYKMQYQQQQLA C2 LCNYKTNLKANFQLHSKTDKHLQKLNFINHIREGGPRNEYKMQY-QQQLA C3 LCNYKTNLKANFQLHSKTDKHLQKLNFINHIREGGPRNEYKMQY-QQQLA C4 LCNYKTNLKANFQLHSKTDKHLQKLNFINHIREGGPRNEYKMQY-QQQLA ************************************:******* ***** C1 ANVVQLKCNCCDFHTNSIQKLSLHTQQMRHDTMRMIFQHLLYIVQQSEMH C2 ANVVQLKCNCCDFHTNSIQKLGLHTQQMRHDTMRMIFQHLLYIVQQSEMH C3 ANVVQLKCNCCDFHTNSIQKLGLHTQQMRHDTMRMIFQHLLYIVQQSEMH C4 TNVVQLKCNCCDFHTNSIQKLGLHTQQMRHDTMRMIFQHLLYIVQQSEMH :********************.**************************** C1 NKSSGSAEDDPQCACPDEDQQLQLQSSKKLLLCQLCNFTAQNIHEMVQHV C2 NKSSGSAEDDPQCACPDEDQQVQLQSSKKLLLCQLCNFTAQNIHEMVQHV C3 NKSSGSAEDDPQCSCPDEDQ--QLQSSKKLLLCQLCNVTATNLHEMVQHV C4 NKSSGSAEDDPQCSCPDEDQ--QLQSSKKLLLCQLCNVTATNLHEMVQHV *************:****** ***************.** *:******* C1 KGIRHLQVEQFICLQRRSENQEIPALNEVFKVTEWVMENEDVSLAPGLNL C2 KGIRHLQVEQFICLQRRSENQEIPALNEVFKVTEWVMENEDVSFASGLNL C3 KGMRHMQVEQFICLQRRSENQEIPALNEVFKVTEWIMDNEDVSFASGLNL C4 KGMRHMQVEQFICLQRRSENQEIPALNEVFKVTEWIMDNEDVSFASGLNL **:**:*****************************:*:*****:*.**** C1 ARTTTNDATTDASYAAASSAA-VPAIPDVSMFSPTSPSSCATSCDKNLSQ C2 ARTATNDAT-DASYAAASSAA-APAIPDVSMFSPTSPSSCATSCDKNLSQ C3 ARATTNDATTDTSYAEASSAAGVPAIPDVSMFSPTSPSSCATSCDKNLSQ C4 ARATTNDATSDASYAEASSAAGAPAIPDVNMFSPTSPSSCATSCDKNVSQ **::***** *:*** ***** .******.*****************:** C1 IVLPNVNNLGSGVPTTVFKCNLCEYFVQSKSEIAAHIETEHSCAESDEFI C2 IVSPNVNKLGSGVPTTVFKCNLCEYFVQSKSEIASHIETEHSCAESDEFI C3 IVSPSVNNLDAGVPTTVFKCNLCEYFVQSKSDIASHIETEHSCAESDEFI C4 IISPSVNNLGSGVPTTVFKCNLCEYFVQSKSDIASHIETEHSCAEGDEFI *: *.**:*.:********************:**:**********.**** C1 TIPTNTAALQAFQTAVAAAALAAVHQRCAVINPPTQDTVDEDKDLDTNVS C2 TIPTNTAALQAFQTAVAAAALAAVHQRCAVINPPIQETVDEDKDLDTNVS C3 SIPTNTAALQAFQTAVAAAALAAVHQRCAAINPP---TVEEDKDLDTNVS C4 SIPTNTAALQAFQTAVAAAALAAVHQRCAAINPP---TVEEDKDIDTNVS :****************************.**** **:****:***** C1 DGPVGIKQERLEQEVDRTTSMDVTKDLASQATDFGAPESPKVAETEVGVQ C2 DAPLGIKQERVEQEVDRTTSMEDIKDLASQATESGAPESPKVAETEVGVQ C3 DGPVAVKQEPVEQEVNRMTSMEETKDLVSQVTESAAQESPKVSESQVGVQ C4 DGPVAIKQERIEQEVDRMTSMEETKDLASQATESAAPKSSKAIEAQIGVQ *.*:.:*** :****:* ***: ***.**.*: .* :*.*. *:::*** C1 CPLCLENHFREKQYLEDHLTSVHSVTRDGLSRLLLLVDQKALKKE--STD C2 CPLCLENHFREKQYLEDHLTSVHSVTRDGLSRLLLLVDQKALKKE--STD C3 CPLCLENHFREKQYLEAHLTSVHSVTRDGLSRLLLLVDQKAWKKENENTD C4 CPLCLENHFREKQYLEAHLTSVHSVTKDGLSRLLLLVDQKAWKKESESTD **************** *********:************** *** .** C1 IACPTDKAPYANTNALERAPTPIENTCNVSLIKSTSANPSQSVSLQGLSC C2 IACPTDKAPYANTNAPERAPSPIENTCNVSLIKSTSANPSQSVSLQGLSC C3 IACPSAKAPFAKTNTLERAPTSIENTCNVSPTKSISANLSLSVGLQGLFC C4 LPCLSAKTPYANTNALERSPTPTENTSNISQIKSTSANPNLPVALQGLSC :.* : *:*:*:**: **:*:. ***.*:* ** *** . .*.**** * C1 QQCEASFKHEEQLLKHAQQNQHFSLQNGEYLCLAASHISRPCFMTFRTIP C2 QQCEASFKHEEQLLKHAQQNQHFPLQNGEYLCLAASHVSRPCFMSFRTIP C3 HQCEASFKHEEQLLQHAQQNQHFPLQNGEYLCLATSHISRPCFMSFRTIP C4 HQCEASFKHEEQLLQHAQQNQHYPLQNGEYLCLATSHISRPCFMSFRTIA :*************:*******:.**********:**:******:****. C1 TMISHFQDLHMSLIISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDA C2 AMISHFQDMHISLIISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDA C3 AMVSHFQDSHMSLVISERHVYKYRCKQCSLAFKTQEKLTTHMLYHTMRDA C4 AMVSHFQDSHMSLVISERHVYKYRCKQCSLAFKTQEKLTTHMLYHTMRDA :*:***** *:**:*******************************:**** C1 TKCSFCQRNFRSTQALQKHMEQAHAEDGTPSTRTNSPQTPMLSTEETHKH C2 TKCSFCQRNFRSTQALQKHMEQAHAEDGTPSTRTNSPQTPMLSTEETNKH C3 TKCSLCQRNFRSTQALQKHMEQAHAEEVTPSTRTNSPQTPVLNTEETHKH C4 TKCSLCQRNFRSTQALQKHMDQAHAEEVTPSTRTNSPHTPILNTEETQQH ****:***************:*****: *********:**:*.****::* C1 LLAESHAVEREVSGSDVSPIELETHLNKETRHLSPTPMSLDSQSHQKHLA C2 LLAESHAGEREVSGSDVSPIELEAHLNKETRHLSPTPMSLDSQSHQQYLA C3 FPSESHAVEREVSVSDVSPLQLESQLNKETRQLSPTPISLDSQSHQQYLA C4 LPSESHGVERAVAVNDVSQLELEMQLNKETRQLSPTPMSLDPQSHQQYLA : :***. ** *: .*** ::** :******:*****:***.****::** C1 TFAALLKQQQCNSDAGGLHPEALSMSTGEMPPQLQGLQNLQHIQQHFGAV C2 TFAALLKQQQCNSDAVGLHPETLSMSTGEMPPQLQGLQNLQHIQQHFGAV C3 TFAALLKQQQCNSDTGALHPEVLSISAGEVSHHLQGLQNLQHMQQQFGAV C4 TFAALLKQQQCNPDAGGLHPEALSMSAGELSHHLQGLQNLQHMQQQFGAV ************.*: .****.**:*:**:. :*********:**:**** C1 AAAAGLPINPVDMLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSGPSA C2 AAASGLPINPVDMLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSGSSA C3 AAASGLSINPVDMLNIMQFHHLMSLNFMNLAPPLVFGANAAGNAVSPSSA C4 AAASGLSINPVDMLNIMQFHHLMSLNFMNLAPPLVFGANATGNALSASSA ***:**.*********************************:***:* .** C1 LNNSITTSTATSASGLGDT-HLTSGVSSIPVDSGKATAVPPQTQLNANAN C2 QNNSITTATATSASGLGDT-HLTTGVSSLPVDSGKATAVPPQTQLNANAN C3 QNNSIKTSTASSALVLGDTQILTSGVSSLPVDSVKAITVPAQTQLTVNAS C4 QNNSITNSTATSALGLGDT-HLTSGVSSLPVDSVKATTVPAQTQLTVNAN ****..:**:** **** **:****:**** ** :**.****..**. C1 SQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMK C2 SQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMK C3 SQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMK C4 SQQLASNQKRARTRITDDQLKILRAHFDINNSPSEESIMEMSQKANLPMK ************************************************** C1 VVKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLND C2 VVKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLND C3 VVKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNIEEYERTGQAKVTPLND C4 VVKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYERTGQAKVTPLND *********************************:**************** C1 TCSVAVTGPMTSSTISLPPSGNINLSSKENATSKVLAAGKANASGPVTFS C2 TCSVAVTGPMTSSTISLPPSGSTNLSSKENATSKVLAAGKANASGPVTFT C3 TSRVAVTAPITASTILLAPSGNANLISKESPTTKVLAAGKVIATGPATLS C4 TCSVAVTAPMSASTISLPPSGNTNLISKENSTTKVLAAGKVLATGPVTFP *. ****.*:::*** *.***. ** ***..*:*******. *:**.*:. C1 ATVPVSTPLSRPESTNSSGNISDYIGNNIFFGQLGSKEQILPYSLDGQIK C2 ATVPVSTPLSRPESTNSSGNISDYIGNNIFFGQLGSKDQILPYSLDGQIK C3 TTVAVSMPVSRPESTTSSGNISDYLGNNIFFGQPGGKDQVLPCSVDGQIK C4 ATVPVSTPVSRPESTNSSGNISDYLGNNIFFGQPGGKDQVLPYSVDGQIK :**.** *:******.********:******** *.*:*:** *:***** C1 SEPQDDMIGATDFAYQTKQHSSFSFLKQQQDLVDPPEQCLTNQNADTAQD C2 SEPQDDVIGATDFAYQTKQHSNFSFLKQQQDLVDPPEQCLTNQNADTVQD C3 SEPQDDMIGANDSAYQTKQHPTFSFLKHQQELTDPPEQCLTNQNADTVQD C4 SEPQDDMIGANDSAYQTKPHSNFSFLRHQQDLADPPEQGLTNQNADTVQD ******:***.* ***** *..****::**:*.***** ********.** C1 QSLLAGSSLASNCQSQQQINIFETKSESGSSDVLSRPPSPNSGAAGNVYG C2 QSLLAGAALASNCQSQQQINIFETKSESGSSDVLSRPPSPNSGAAGNMYG C3 QSLLAGSALASHCQNQQQINIFETKSESGSSDVMSRPPSPSSGAAGNIYG C4 QSLLAGSALASHCQSQQQINIFETKSESGSSDVMSRPPSPSCGATGNIYG ******::***:**.******************:******..**:**:** C1 SMNDLLNQQLENMGSNMGPPKKMQIVGKTFEKNVAPMVTSGSVSTQFESN C2 SMNDLINQQLENMGSNMGPPKKMQIVGKTFEKNVAPMVTSGSVSTQFESN C3 SMNDLINQQLENMGSNMGPPKNLQTVGKTFEKNAAPMPTSGSISAQFESN C4 SMNDLINQQLENMGSNMGPPKNLQIIGKTFEKNVAPVATTGSASTQFESN *****:***************::* :*******.**: *:** *:***** C1 SSNSSSSSSSTSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSK C2 SSNSSSSSSSTSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSK C3 SSNSSSSSSSTSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSK C4 SSNSSSSSSSTSGGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSK ************************************************** C1 LLLLSPRVIVVWFQNARQKQRKIYENQPNNTLFENEETKKQNINYACKKC C2 LLLLSPRVIVVWFQNARQKQRKIYENQPNNTLFENEETKKQNINYACKKC C3 LLLLSPRVIVVWFQNARQKQRKIYENQPNNTLFENEETKKQNINYACKKC C4 LLLLSPRVIVVWFQNARQKQRKIYENQPNNSLFENEETKKQNINYACKKC ******************************:******************* C1 NLVFQRYYELIRHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSM C2 NLVFQRYYELIRHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSM C3 NLVFQRYYELIRHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSM C4 NLVFQRYYELIRHQKNHCFKEENNKKSAKAQIAAAQIAQNLSSEDSNSSI *************************************************: C1 DIHHVGICPPGSAVASHTLSTPGSAAPLPGQYTQHSFGALPSPQHLFAKS C2 DIHHVGICPPGSAVVSQTLSTPGSAAPLSGQYTQHSFGALPSPQHLFAKS C3 DIHHGGIGQPGTAVVSQTLSTPGSAASLPGQYAQHSFGALPSPQHLFAKS C4 DIHHVGICPPGSAVVSQTLSTPGSAAPLPGQYAQHSFGALPSPQHLFAKS **** ** **:**.*:*********.*.***:***************** C1 SSLTDFSPSTTPTPPQRERSNSLDQIQRPPKFDCDKCELNFNQLEKLREH C2 SSLTDFSPSTTPTPPQRERSNSLDHPQRPPKFDCDKCELKFNQSEKLREH C3 SSLTDFSPSTTPTPPQRERSNSLDHPQRPPKFDCDKCDLKFNHLEKLREH C4 SSLTDFSPSTTPTPPHRERSNSLDHPQRPPKFDCDKCDLKFSHLEKLREH ***************:********: ***********:*:*.: ****** C1 QLLHLMNPGNICSDVGQNSNPEANFGPFGSILQSLQQAAAQQQQQHHQQP C2 QLLHLMNPGNIFSDASQNSNPEANFGPFGSILQSLQQAAAQQQQLQHQPP C3 QLLHLMNQGNIFSDAGQNTNPEAHFGPFGSILQSLQQAAAQQQQPHHQPP C4 QLLHLMNQGSIFSDAGQSSNPDANFGPFGSILQSLQQAAAQQKQPHHQPP ******* *.* **..*.:**:*:******************:* :** * C1 PTKKRKYSDCSSNADEMQSLSELEASQKKHEYLYKYFMQNETSQEVKQQF C2 PTKKRKYSDCSSNADEMQSLSELEASQKKHEFLYKYFMQNETSQEVKQQF C3 PTKKRKYSDCSSNADEMQSLSEIEVSHKKHEFLYKYFMQNETSSELKQQF C4 PTKKRKYSDCSSNADEMQSLSEHEVSQKKHEFLYKYFMQNETSPEVKKQF ********************** *.*:****:*********** *:*:** C1 LMQQQQKKLEQGNECDFELDFLTNFYQQNELKKVSNYDFLLQYYRTHEEA C2 LMQQQQKKLEQGNDCDFELDFLTNFYQQSELKKVSNYDFLLQYYRTHEEA C3 LMQQQHKKVEQGNESEFELDFLTNFYQQSELKKVSNYDFLLSYYRTHEES C4 LMQQQHKKLEQGNESDFELDFLTNFYQQSELKKVSSYDYLLQYYRTHEEA *****:**:****:.:************.******.**:**.*******: C1 KSSQQHTFSSSKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDVPGYKPS C2 KSSQQHLFSSSKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDVPGYKPS C3 KSSPQHIFSSSKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDLPGYKPS C4 KSSQQQIFSSSKKPTIEFLLQYYQLNESKKFFQLVASPQIIPDLPGYKPS *** *: ************************************:****** C1 LRIPKSTSDEAPYIGETSLEQATELQREKQDEQLRIDRPSEENDLSMNKN C2 SRMPKSTSDEAPYIGETSLEQATELQREKQDEQLRIDRPSEENELSMNKN C3 SRMPKPASDEAPNIGETSLEQATKLQRE---EQLRIDRPSEENDLSITKN C4 SGLQKPESDDGPNIGETSLEQATELQRE---EHLCVDRPSAKNDLSMNKN : *. **:.* **********:**** *:* :**** :*:**:.** C1 KVENINNN--NINVDQSNLTETNGGVPSVETKEECTQESSLIAMDDENKY C2 KVENINNNNIGIHVGQSNLTATNG-IPSVETKDESTQESSLIAIDNENKY C3 KVENINNNNISINEGQNDLTETNG-SPSGETKEEFPQESSLIETDNDNKY C4 KVENINNNNISISVGQSDSTETNG-SPSGETKEEFPQEPSLIAIDDDNKY ******** .* .*.: * *** ** ***:* .**.*** *::*** C1 LCTRSKQKDDKEKSHYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDEL C2 LCARSKQKDDKEKSHYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDEL C3 LCTRSKQKNEKEKSQYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDEP C4 LCTTSKQNDEKEKSQYLHNLEDFLDATMIENNSQTLTFNDDEKACQKDEP **: ***:::****:********************************** C1 TQNSNAIEKRSSVSPVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSR C2 TQNSNAIEKRSSVSPVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSR C3 IQNSNEMEQRSSVSPVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSR C4 IQNSNEMEKRSSVSPVNVSSKQNKRLRTTILPEQLNFLYECYQSESNPSR **** :*:***************************************** C1 KMLEEISKKVNLKKRVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSS C2 KMLEEISKKVNLKKRVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSS C3 KMLEEISKKVNLKKRVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSS C4 KMLEEISKKVNLKKRVVQVWFQNSRAKDKKSRNQRHYAHISDDNSYDGSS ************************************************** C1 GKEVYSDLRSNGIT-VDTDLETNLQDCQLCQVTQVNIRKHAFSVEHISKM C2 GKEAYSDLRSNGIT-VDTDLETNLQDCQLCQVTQVNIRKHAFSVEHISKM C3 GKEVVSDLRSNGVA-VETDHETNLQDCQLCQVTQVNIRKHAFSVEHICKM C4 GKDVASDPKSNGVNGVDTDHETNLQDCQLCQVSQVNIRKHAFSVEHICKM **:. ** :***: *:** ************:**************.** C1 KKLLEQTTELYAQSNGSGSEDNDSDREKRFYNLSKAFLLQHVVTNATSHA C2 KKLLEQTTELYAQSNGSGSEDNDSDREKRFYNLSKAFLFQHVVTNATSHS C3 KKLLEQTTELYAQSNGSGSDDNDSDREKRFYNLSKAFLLQHVVSNATSHA C4 KKLLDQTTELYAQSNGSGSDDNESDREKRFYNLSKAFLFQHVVSNATSHA ****:**************:**:***************:****:*****: C1 IHTARQDSDVIAEGNCILNYDTNGGDSKSHVQHNLPNEVVSEDARKIAGN C2 IHTARQDSDAIAEGNCMLNYDTNGGDSKSHVQHNLPNEVVSEDTRKIAGN C3 IHTPRQDPDAIAEGNCVLTYETNGGDSKGHIHHNLPNEAVPEDAGKIASN C4 IHAPRQDSDAIAEGNCMLTYDTNGGDSKSQIQHNLPNEVVPEDARKIASN **:.***.*.******:*.*:*******.:::******.*.**: ***.* C1 QELMQQLFNRNHITVIGGK---------------- C2 QELMQQLFNRNHITVIGGKo--------------- C3 QELMQQLFNRNHITVIGGKoooooooooooooooo C4 QELMQQLFNRNHLTVIGGK---------------- ************:****** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [37038] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 4 SEQUENCES [PROTEIN] Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 3005 type PROTEIN Struct Unchecked Input File /opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 3005 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/443/zfh2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.al