--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Dec 09 18:08:37 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/442/Zasp52-PV/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -7244.56 -7255.58 2 -7244.74 -7255.82 -------------------------------------- TOTAL -7244.64 -7255.71 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.337224 0.000428 0.298926 0.378220 0.337332 1225.99 1363.50 1.001 r(A<->C){all} 0.055999 0.000110 0.035766 0.076028 0.055664 947.64 1148.76 1.000 r(A<->G){all} 0.186750 0.000409 0.150151 0.228529 0.185895 689.02 815.90 1.000 r(A<->T){all} 0.188963 0.000595 0.141989 0.236805 0.188954 789.92 849.05 1.000 r(C<->G){all} 0.063743 0.000092 0.045144 0.082166 0.063569 1229.81 1245.51 1.000 r(C<->T){all} 0.390447 0.000728 0.338471 0.443517 0.390551 892.30 1094.42 1.000 r(G<->T){all} 0.114097 0.000320 0.080686 0.148575 0.113565 1037.65 1072.45 1.000 pi(A){all} 0.238266 0.000055 0.223772 0.253124 0.238153 1147.56 1227.64 1.000 pi(C){all} 0.327761 0.000062 0.312818 0.343498 0.327637 1120.50 1178.52 1.001 pi(G){all} 0.267216 0.000058 0.252160 0.282110 0.267165 1168.89 1192.64 1.000 pi(T){all} 0.166758 0.000040 0.154658 0.179088 0.166681 1092.85 1157.76 1.001 alpha{1,2} 0.064640 0.001839 0.000116 0.142021 0.059522 1042.96 1067.01 1.000 alpha{3} 1.705894 0.326819 0.831822 2.884117 1.602771 1079.56 1215.46 1.000 pinvar{all} 0.373204 0.002669 0.281022 0.486256 0.370235 1023.40 1083.32 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -6363.986579 Model 2: PositiveSelection -6359.292336 Model 0: one-ratio -6464.802089 Model 3: discrete -6359.064119 Model 7: beta -6364.392884 Model 8: beta&w>1 -6359.388347 Model 0 vs 1 201.6310199999989 Model 2 vs 1 9.38848599999983 Additional information for M1 vs M2: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV) Pr(w>1) post mean +- SE for w 263 T 0.748 5.526 505 L 0.993** 7.012 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV) Pr(w>1) post mean +- SE for w 255 S 0.790 2.316 +- 0.790 256 N 0.744 2.221 +- 0.872 257 T 0.717 2.189 +- 0.845 263 T 0.918 2.534 +- 0.629 272 P 0.560 1.862 +- 0.962 275 N 0.618 2.004 +- 0.868 279 A 0.624 2.018 +- 0.871 395 T 0.615 2.003 +- 0.874 454 V 0.884 2.478 +- 0.683 456 A 0.857 2.433 +- 0.719 458 T 0.740 2.214 +- 0.877 459 A 0.882 2.475 +- 0.685 461 A 0.695 2.126 +- 0.912 467 A 0.719 2.174 +- 0.895 477 T 0.712 2.161 +- 0.899 501 E 0.553 1.893 +- 0.881 505 L 0.986* 2.641 +- 0.482 511 Q 0.812 2.355 +- 0.769 512 P 0.708 2.152 +- 0.904 533 A 0.537 1.811 +- 0.978 637 S 0.784 2.303 +- 0.787 642 N 0.524 1.840 +- 0.879 643 Y 0.590 1.956 +- 0.875 654 S 0.837 2.397 +- 0.742 658 T 0.739 2.224 +- 0.825 703 D 0.505 1.746 +- 0.975 706 P 0.742 2.218 +- 0.876 Model 8 vs 7 10.0090739999996 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV) Pr(w>1) post mean +- SE for w 263 T 0.772 5.238 454 V 0.516 3.833 459 A 0.508 3.788 505 L 0.993** 6.455 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV) Pr(w>1) post mean +- SE for w 255 S 0.925 2.362 +- 0.582 256 N 0.859 2.220 +- 0.767 257 T 0.879 2.270 +- 0.695 263 T 0.978* 2.465 +- 0.402 272 P 0.700 1.881 +- 0.987 275 N 0.825 2.160 +- 0.789 279 A 0.825 2.160 +- 0.791 282 D 0.566 1.587 +- 1.066 395 T 0.816 2.142 +- 0.805 454 V 0.966* 2.442 +- 0.451 456 A 0.956* 2.422 +- 0.488 458 T 0.855 2.211 +- 0.777 459 A 0.966* 2.440 +- 0.453 461 A 0.818 2.133 +- 0.843 467 A 0.838 2.175 +- 0.809 477 T 0.833 2.164 +- 0.818 501 E 0.758 2.024 +- 0.882 505 L 0.998** 2.501 +- 0.305 511 Q 0.936 2.383 +- 0.552 512 P 0.828 2.154 +- 0.827 513 G 0.587 1.632 +- 1.064 533 A 0.665 1.805 +- 1.019 565 P 0.617 1.700 +- 1.047 577 Q 0.503 1.446 +- 1.085 637 S 0.942 2.396 +- 0.524 642 N 0.727 1.961 +- 0.915 643 Y 0.798 2.106 +- 0.830 654 S 0.948 2.407 +- 0.513 658 T 0.900 2.312 +- 0.646 703 D 0.636 1.740 +- 1.037 706 P 0.855 2.212 +- 0.775
>C1 MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQPQQ DERIGVPLQSNTLAPEATHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLP ICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGV FVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPP TGTEGYVPVPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPV ASSQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVA DEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQAP GKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYAT LPRSNVGQQGRNVRYQQQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSP YITSNTNNYSSSNSYNNNNYSNYNNNNVYRAPGSASAPAPVPSAAPTKAT APFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGK SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC KNHARoooo >C2 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLRVEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLNHQQPQQDE RIGVPLQPNSLAPEASHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLPIC PGLQGPEYKAEMEAAEAALATDQDGRPRPLAASGHPACQLCGVGIVGVFV RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTG TEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVAS SQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVADE PSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVHPPGK GACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLP RSNVGQQGRNVRYQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITS NTNNYSSSNSYNNNNYSTYNNNNVYRAPGSANAPAPSAASTKATAPFKAP IVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFG ATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFI CVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNA IGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTKCFACGF PVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARo ooooooooo >C3 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQPQQDE RIGVPLQANTLAPEASHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLPIC PGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGVFV RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTG TEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVAS SQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVADE PSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQPPGK GACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLP RSNVGQQGRNVRYQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITS NTNNYSSSNSYNNNNYSTYNNNNVYRAPGSANAPAPVPSAAPTKATAPFK APIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGA FGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDH FICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCL NAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFAC GFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHA Roooooooo >C4 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQQQDER IGVPLQSNTLAPEATHRPSLPVAPKDGVEQPRQDQQEQPDPRIIVLPICP GLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGVFVR IKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGT EGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVASS QATVATVAPSAATAAAATPQAATATDSPVATASSSDNMSAYVADEPSSIY GQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVIRSVQAPGKGACPS YKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQNPYATLPRSNVGQQ GRNVRYQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSNSN TNNNNYSTYNNNNNNNVYRAPGSANAPAPAPAPSAAPIKATAPFKAPIVP KSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATS APKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVN GNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGK HFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVE AGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo ooooooooo >C5 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQQQQ QNQQDERIGVPLQSNSLAPEAPHRPSLPVAPKDNVEQPRQDQQEQADPRI IVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACRLCGVG IVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAI NNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSNGNSAPA PAPVASSQAAVATVAPTAAAAAAAATPQAATATDSPAATASSTDNMSAYV ADEPSSIYGQISADSVAIAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQA PGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQQSPRPAPGGQNPY ATLPRSNVGQQGRNVRYQQQQQKQQYRNSYPMGSNYSTPSQSPYITSNTN NYSSNNHNNNNNYGSYNNNNVYRAPGSANAPAPAAAPAPLAAPTRATAPF KAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAG AFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPD HFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDC LNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFA CGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNH ARooooooo >C6 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEESGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQTQQ DERIGVPLQAGTLAPAAPHRPSLPVAPKDKEEQLRQQQQQQQDQEQADPR IIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPACQLCGV GIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA INNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAP APAPVASPQATVATAAPVATSAAAAATPLAATATDSPAATATSDNMSAYV ADEPSSIYGQINTSSGVSGPPPPSQSGDQPFEYVTLTGNVIRSVQPPGKG AGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQSPRPAPGGNNPYATLPR SNVGQQGRNVRYQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPT NNNYGSSNTNNNYSTYNNNNVYRAPGSAPAPAAVKATAPLKAPIAPKSVI ANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATS APKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVN GNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGK HFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVE AGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo ooooooooo >C7 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQDER IGVSLQAGSLAPAAPHRPSLPVAQKDKEEQLRQQQQQDQEQADPRIIVLP ICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPACQLCGVGIVGV FVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAINNPP TGTEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSNGNSAPAPAPV ASPQATVATVATVAPVATTAAAAATPLAATATDSPAATATSDNMSAYVAD EPSSIYGQISTNSGASAPPPPSQSGDQPFEYVTLTGNVIRSVQAPGKGAG PSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNPYATLPRS NVGQQGRNVRYQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPTN NYSSSNTNNTNYSTFNNNNVYRAPGSANATAPAPVKAIAPLKAPIAPKSV IANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGAT SAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICV NGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIG KHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPV EAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooo ooooooooo >C8 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQLPL QQQQPDERIGVPLQSNTLAPEASHRPSLPVAQKDKEEQTRQDQEQADPRI IVMPICPTLQGPEYKAEMEAAAAALAIDQDGRPRPLAASGHPACQLCGVG IVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAI NNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAPA PAPVASPQATATVATSAATPAAAATAAIPATPLLATATDTPAPVATSDNM SAYVADEPSSIYGQINTNSGAVAPPPQASIVAGGSDQPFEYVTLTGNVIR SVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGN NPYATLPRSNVGQQGRNVRYQQQQQQYNNQQQQKQQYRNSYPMGSNYSTP SQSPYITSNTTNYNNNNNNYSTYNNNNNNVYRGTGSANAPAPAPAPFAAP IKATAPFKTPIAPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVPDSPG AGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITAL GRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCA GKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNEL FTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGG RPFCKNHAR CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=992 C1 MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C2 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C3 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C4 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C5 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C6 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C7 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ C8 MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ ********:***************************************** C1 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C2 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C3 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C4 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C5 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C6 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C7 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT C8 PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT ************************************************** C1 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C2 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C3 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C4 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C5 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS C6 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C7 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS C8 GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS ****************************************:********* C1 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C2 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C3 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C4 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C5 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C6 IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C7 IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS C8 IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS **************:*********************************** C1 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQPQQ C2 EVLKFLRVEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLNHQ--QPQQ C3 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQ--QPQQ C4 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQQQ--- C5 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQQQQ C6 EVLKFLREEESGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQTQQ C7 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQ--- C8 EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQLPL ******* **:******************************:** * C1 -----DERIGVPLQSNTLAPEATHRPSLPVAPKDNEEQARQDQQ-----E C2 -----DERIGVPLQPNSLAPEASHRPSLPVAPKDNEEQARQDQQ-----E C3 -----DERIGVPLQANTLAPEASHRPSLPVAPKDNEEQARQDQQ-----E C4 -----DERIGVPLQSNTLAPEATHRPSLPVAPKDGVEQPRQDQQ-----E C5 QNQQ-DERIGVPLQSNSLAPEAPHRPSLPVAPKDNVEQPRQDQQ-----E C6 -----DERIGVPLQAGTLAPAAPHRPSLPVAPKDKEEQLRQQQQQQQDQE C7 -----DERIGVSLQAGSLAPAAPHRPSLPVAQKDKEEQLRQQQQ--QDQE C8 QQQQPDERIGVPLQSNTLAPEASHRPSLPVAQKDKEEQTRQDQ------E ******.**..:*** *.******** ** ** **:* * C1 QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC C2 QPDPRIIVLPICPGLQGPEYKAEMEAAEAALATDQDGRPRPLAASGHPAC C3 QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC C4 QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC C5 QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC C6 QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPAC C7 QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPAC C8 QADPRIIVMPICPTLQGPEYKAEMEAAAAALAIDQDGRPRPLAASGHPAC *.******:**** ************* **** *********:******* C1 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C2 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C3 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C4 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C5 RLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C6 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C7 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH C8 QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH :************************************************* C1 AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGHSNGYSN C2 AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN C3 AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN C4 AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN C5 AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSN C6 AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN C7 ARQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSN C8 AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN *:********:**************************:***** ****** C1 GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT C2 GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT C3 GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT C4 GNSTPAPAPVASSQA--TVATVAP---SAATA-AAATPQAATATDSPVAT C5 GNSAPAPAPVASSQA--AVATVAPT--AAAAA-AAATPQAATATDSPAAT C6 GNSAPAPAPVASPQA--TVATAA---PVATSAAAAATPLAATATDSPAAT C7 GNSAPAPAPVASPQA--TVATVATVAPVATTAAAAATPLAATATDSPAAT C8 GNSAPAPAPVASPQATATVATSAATPAAAATAAIPATPLLATATDTPAPV ***:********.** :*** * *::* .*** *****:*... C1 ASSSDNMSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVT C2 ASSSDNMSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVT C3 ASSSDNMSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVT C4 ASSSDNMSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVT C5 ASSTDNMSAYVADEPSSIYGQISADSVAIAPPPPQPPTAGGGDQPFEYVT C6 ATS-DNMSAYVADEPSSIYGQINTSSGVSGPPPPSQ----SGDQPFEYVT C7 ATS-DNMSAYVADEPSSIYGQISTNSGASAPPPPSQ----SGDQPFEYVT C8 ATS-DNMSAYVADEPSSIYGQINTNSGAVAPPPQASIVAGGSDQPFEYVT *:* ******************.:.* . .**. ..******** C1 LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S C2 LTGNVIRSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S C3 LTGNVIRSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S C4 LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S C5 LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQQS C6 LTGNVIRSVQPPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQ-S C7 LTGNVIRSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQS C8 LTGNVIRSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S *********:.***** ************************* ***** * C1 PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQQQYNNQQKQQYRNSY C2 PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSY C3 PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSY C4 PR--PGGQNPYATLPRSNVGQQGRNVRYQQQQQYN----NQQKQQYRNSY C5 PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQ---------QQKQQYRNSY C6 PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN---NQQKQQYRNSY C7 PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN---NQQKQQYRNSY C8 PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN-NQQQQKQQYRNSY ** ***:*********************** ********** C1 PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSNYNNNNVYRAPGS C2 PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSTYNNNNVYRAPGS C3 PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSTYNNNNVYRAPGS C4 PMGSNYSTPSQSPYITSNTNN-YSNSNTNNNNYSTYNNNNNNNVYRAPGS C5 PMGSNYSTPSQSPYITSNTNN-YSSNNHNNNNN--YGSYNNNNVYRAPGS C6 PMGSNYSTPSQSPYIITPTNNNYGSSNTNN-NYS---TYNNNNVYRAPG- C7 PMGSNYSTPSQSPYIITPTNN-YSSSNTNNTNYS---TFNNNNVYRAPGS C8 PMGSNYSTPSQSPYITSNTTN-YNNNNNNYSTY----NNNNNNVYRGTGS *************** : *.* *...* . . *******..* C1 ASAPAPVPSAAP----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF C2 ANAPA--PSAAS----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF C3 ANAPAPVPSAAP----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF C4 ANAPAPAPAPS--AAPIKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF C5 ANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNAAAP--PAPAVF C6 -SAPAP--------AAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPAVF C7 ANATAP--------APVKAIAPLKAPIAPKSVIANAFNAAAPPAPAPAVF C8 ANAPAPAPAPFA--APIKATAPFKTPIAPKSVIANAVNAAAP--PAPAVF .*.* :* **:*:**.********.***** ****** C1 PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV C2 PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV C3 PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV C4 PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV C5 PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV C6 PPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGPGV C7 PPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGRGILNKAAGPGV C8 PPDLSDLNLNSNVPDSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV ****.******** :* ******************************* C1 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C2 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C3 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C4 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C5 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C6 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C7 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG C8 RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG ************************************************** C1 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C2 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKVFG C3 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C4 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C5 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C6 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C7 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG C8 DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG ***********************************************:** C1 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C2 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C3 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C4 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C5 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C6 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C7 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC C8 NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC ************************************************** C1 FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo--------- C2 FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooooo--- C3 FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooo----- C4 FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo C5 FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooo------ C6 FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo C7 FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooooooo- C8 FNCTFCKQNLEGQSFYNKGGRPFCKNHAR------------- ***************************** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [64910] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [64910] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [64910] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [64910] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 959 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 959 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [64910] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2