--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Dec 09 18:08:37 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/442/Zasp52-PV/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -7244.56         -7255.58
2      -7244.74         -7255.82
--------------------------------------
TOTAL    -7244.64         -7255.71
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PV/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.337224    0.000428    0.298926    0.378220    0.337332   1225.99   1363.50    1.001
r(A<->C){all}   0.055999    0.000110    0.035766    0.076028    0.055664    947.64   1148.76    1.000
r(A<->G){all}   0.186750    0.000409    0.150151    0.228529    0.185895    689.02    815.90    1.000
r(A<->T){all}   0.188963    0.000595    0.141989    0.236805    0.188954    789.92    849.05    1.000
r(C<->G){all}   0.063743    0.000092    0.045144    0.082166    0.063569   1229.81   1245.51    1.000
r(C<->T){all}   0.390447    0.000728    0.338471    0.443517    0.390551    892.30   1094.42    1.000
r(G<->T){all}   0.114097    0.000320    0.080686    0.148575    0.113565   1037.65   1072.45    1.000
pi(A){all}      0.238266    0.000055    0.223772    0.253124    0.238153   1147.56   1227.64    1.000
pi(C){all}      0.327761    0.000062    0.312818    0.343498    0.327637   1120.50   1178.52    1.001
pi(G){all}      0.267216    0.000058    0.252160    0.282110    0.267165   1168.89   1192.64    1.000
pi(T){all}      0.166758    0.000040    0.154658    0.179088    0.166681   1092.85   1157.76    1.001
alpha{1,2}      0.064640    0.001839    0.000116    0.142021    0.059522   1042.96   1067.01    1.000
alpha{3}        1.705894    0.326819    0.831822    2.884117    1.602771   1079.56   1215.46    1.000
pinvar{all}     0.373204    0.002669    0.281022    0.486256    0.370235   1023.40   1083.32    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-6363.986579
Model 2: PositiveSelection	-6359.292336
Model 0: one-ratio	-6464.802089
Model 3: discrete	-6359.064119
Model 7: beta	-6364.392884
Model 8: beta&w>1	-6359.388347


Model 0 vs 1	201.6310199999989

Model 2 vs 1	9.38848599999983

Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV)

            Pr(w>1)     post mean +- SE for w

   263 T      0.748         5.526
   505 L      0.993**       7.012

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV)

            Pr(w>1)     post mean +- SE for w

   255 S      0.790         2.316 +- 0.790
   256 N      0.744         2.221 +- 0.872
   257 T      0.717         2.189 +- 0.845
   263 T      0.918         2.534 +- 0.629
   272 P      0.560         1.862 +- 0.962
   275 N      0.618         2.004 +- 0.868
   279 A      0.624         2.018 +- 0.871
   395 T      0.615         2.003 +- 0.874
   454 V      0.884         2.478 +- 0.683
   456 A      0.857         2.433 +- 0.719
   458 T      0.740         2.214 +- 0.877
   459 A      0.882         2.475 +- 0.685
   461 A      0.695         2.126 +- 0.912
   467 A      0.719         2.174 +- 0.895
   477 T      0.712         2.161 +- 0.899
   501 E      0.553         1.893 +- 0.881
   505 L      0.986*        2.641 +- 0.482
   511 Q      0.812         2.355 +- 0.769
   512 P      0.708         2.152 +- 0.904
   533 A      0.537         1.811 +- 0.978
   637 S      0.784         2.303 +- 0.787
   642 N      0.524         1.840 +- 0.879
   643 Y      0.590         1.956 +- 0.875
   654 S      0.837         2.397 +- 0.742
   658 T      0.739         2.224 +- 0.825
   703 D      0.505         1.746 +- 0.975
   706 P      0.742         2.218 +- 0.876


Model 8 vs 7	10.0090739999996

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV)

            Pr(w>1)     post mean +- SE for w

   263 T      0.772         5.238
   454 V      0.516         3.833
   459 A      0.508         3.788
   505 L      0.993**       6.455

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Zasp52-PV)

            Pr(w>1)     post mean +- SE for w

   255 S      0.925         2.362 +- 0.582
   256 N      0.859         2.220 +- 0.767
   257 T      0.879         2.270 +- 0.695
   263 T      0.978*        2.465 +- 0.402
   272 P      0.700         1.881 +- 0.987
   275 N      0.825         2.160 +- 0.789
   279 A      0.825         2.160 +- 0.791
   282 D      0.566         1.587 +- 1.066
   395 T      0.816         2.142 +- 0.805
   454 V      0.966*        2.442 +- 0.451
   456 A      0.956*        2.422 +- 0.488
   458 T      0.855         2.211 +- 0.777
   459 A      0.966*        2.440 +- 0.453
   461 A      0.818         2.133 +- 0.843
   467 A      0.838         2.175 +- 0.809
   477 T      0.833         2.164 +- 0.818
   501 E      0.758         2.024 +- 0.882
   505 L      0.998**       2.501 +- 0.305
   511 Q      0.936         2.383 +- 0.552
   512 P      0.828         2.154 +- 0.827
   513 G      0.587         1.632 +- 1.064
   533 A      0.665         1.805 +- 1.019
   565 P      0.617         1.700 +- 1.047
   577 Q      0.503         1.446 +- 1.085
   637 S      0.942         2.396 +- 0.524
   642 N      0.727         1.961 +- 0.915
   643 Y      0.798         2.106 +- 0.830
   654 S      0.948         2.407 +- 0.513
   658 T      0.900         2.312 +- 0.646
   703 D      0.636         1.740 +- 1.037
   706 P      0.855         2.212 +- 0.775

>C1
MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQPQQ
DERIGVPLQSNTLAPEATHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLP
ICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGV
FVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPP
TGTEGYVPVPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPV
ASSQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVA
DEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQAP
GKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYAT
LPRSNVGQQGRNVRYQQQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSP
YITSNTNNYSSSNSYNNNNYSNYNNNNVYRAPGSASAPAPVPSAAPTKAT
APFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGK
SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
KNHARoooo
>C2
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLRVEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLNHQQPQQDE
RIGVPLQPNSLAPEASHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLPIC
PGLQGPEYKAEMEAAEAALATDQDGRPRPLAASGHPACQLCGVGIVGVFV
RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTG
TEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVAS
SQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVADE
PSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVHPPGK
GACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLP
RSNVGQQGRNVRYQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITS
NTNNYSSSNSYNNNNYSTYNNNNVYRAPGSANAPAPSAASTKATAPFKAP
IVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFG
ATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFI
CVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNA
IGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTKCFACGF
PVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARo
ooooooooo
>C3
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQPQQDE
RIGVPLQANTLAPEASHRPSLPVAPKDNEEQARQDQQEQPDPRIIVLPIC
PGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGVFV
RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTG
TEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVAS
SQATATVATVAPSAATAATAAATPQAATATDSPAATASSSDNMSAYVADE
PSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQPPGK
GACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLP
RSNVGQQGRNVRYQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITS
NTNNYSSSNSYNNNNYSTYNNNNVYRAPGSANAPAPVPSAAPTKATAPFK
APIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGA
FGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDH
FICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCL
NAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFAC
GFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHA
Roooooooo
>C4
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQQQDER
IGVPLQSNTLAPEATHRPSLPVAPKDGVEQPRQDQQEQPDPRIIVLPICP
GLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACQLCGVGIVGVFVR
IKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGT
EGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVASS
QATVATVAPSAATAAAATPQAATATDSPVATASSSDNMSAYVADEPSSIY
GQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVIRSVQAPGKGACPS
YKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQNPYATLPRSNVGQQ
GRNVRYQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSNSN
TNNNNYSTYNNNNNNNVYRAPGSANAPAPAPAPSAAPIKATAPFKAPIVP
KSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATS
APKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVN
GNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGK
HFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVE
AGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo
ooooooooo
>C5
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQQQQ
QNQQDERIGVPLQSNSLAPEAPHRPSLPVAPKDNVEQPRQDQQEQADPRI
IVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPACRLCGVG
IVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAI
NNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSNGNSAPA
PAPVASSQAAVATVAPTAAAAAAAATPQAATATDSPAATASSTDNMSAYV
ADEPSSIYGQISADSVAIAPPPPQPPTAGGGDQPFEYVTLTGNVIRSVQA
PGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQQSPRPAPGGQNPY
ATLPRSNVGQQGRNVRYQQQQQKQQYRNSYPMGSNYSTPSQSPYITSNTN
NYSSNNHNNNNNYGSYNNNNVYRAPGSANAPAPAAAPAPLAAPTRATAPF
KAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAG
AFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPD
HFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDC
LNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFA
CGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNH
ARooooooo
>C6
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEESGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQTQQ
DERIGVPLQAGTLAPAAPHRPSLPVAPKDKEEQLRQQQQQQQDQEQADPR
IIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPACQLCGV
GIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
INNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAP
APAPVASPQATVATAAPVATSAAAAATPLAATATDSPAATATSDNMSAYV
ADEPSSIYGQINTSSGVSGPPPPSQSGDQPFEYVTLTGNVIRSVQPPGKG
AGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQSPRPAPGGNNPYATLPR
SNVGQQGRNVRYQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPT
NNNYGSSNTNNNYSTYNNNNVYRAPGSAPAPAAVKATAPLKAPIAPKSVI
ANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATS
APKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVN
GNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGK
HFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVE
AGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo
ooooooooo
>C7
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQDER
IGVSLQAGSLAPAAPHRPSLPVAQKDKEEQLRQQQQQDQEQADPRIIVLP
ICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPACQLCGVGIVGV
FVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAINNPP
TGTEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSNGNSAPAPAPV
ASPQATVATVATVAPVATTAAAAATPLAATATDSPAATATSDNMSAYVAD
EPSSIYGQISTNSGASAPPPPSQSGDQPFEYVTLTGNVIRSVQAPGKGAG
PSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNPYATLPRS
NVGQQGRNVRYQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPTN
NYSSSNTNNTNYSTFNNNNVYRAPGSANATAPAPVKAIAPLKAPIAPKSV
IANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGAT
SAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICV
NGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIG
KHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPV
EAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooo
ooooooooo
>C8
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQLPL
QQQQPDERIGVPLQSNTLAPEASHRPSLPVAQKDKEEQTRQDQEQADPRI
IVMPICPTLQGPEYKAEMEAAAAALAIDQDGRPRPLAASGHPACQLCGVG
IVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAI
NNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAPA
PAPVASPQATATVATSAATPAAAATAAIPATPLLATATDTPAPVATSDNM
SAYVADEPSSIYGQINTNSGAVAPPPQASIVAGGSDQPFEYVTLTGNVIR
SVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGGN
NPYATLPRSNVGQQGRNVRYQQQQQQYNNQQQQKQQYRNSYPMGSNYSTP
SQSPYITSNTTNYNNNNNNYSTYNNNNNNVYRGTGSANAPAPAPAPFAAP
IKATAPFKTPIAPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVPDSPG
AGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITAL
GRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCA
GKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNEL
FTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGG
RPFCKNHAR
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=992 

C1              MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C2              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C3              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C4              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C5              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C6              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C7              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C8              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
                ********:*****************************************

C1              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C2              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C3              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C4              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C5              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C6              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C7              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C8              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
                **************************************************

C1              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C2              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C3              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C4              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C5              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C6              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C7              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C8              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
                ****************************************:*********

C1              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C2              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C3              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C4              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C5              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C6              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C7              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C8              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
                **************:***********************************

C1              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQPQQ
C2              EVLKFLRVEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLNHQ--QPQQ
C3              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQ--QPQQ
C4              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQQQQ---
C5              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQQQQ
C6              EVLKFLREEESGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQTQQ
C7              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQ---
C8              EVLKFLREEETGQSTPEPHSPANFYWTQSHAIGGNERRTPLHHQHQQLPL
                ******* **:******************************:**  *   

C1              -----DERIGVPLQSNTLAPEATHRPSLPVAPKDNEEQARQDQQ-----E
C2              -----DERIGVPLQPNSLAPEASHRPSLPVAPKDNEEQARQDQQ-----E
C3              -----DERIGVPLQANTLAPEASHRPSLPVAPKDNEEQARQDQQ-----E
C4              -----DERIGVPLQSNTLAPEATHRPSLPVAPKDGVEQPRQDQQ-----E
C5              QNQQ-DERIGVPLQSNSLAPEAPHRPSLPVAPKDNVEQPRQDQQ-----E
C6              -----DERIGVPLQAGTLAPAAPHRPSLPVAPKDKEEQLRQQQQQQQDQE
C7              -----DERIGVSLQAGSLAPAAPHRPSLPVAQKDKEEQLRQQQQ--QDQE
C8              QQQQPDERIGVPLQSNTLAPEASHRPSLPVAQKDKEEQTRQDQ------E
                     ******.**..:*** *.******** **  ** **:*      *

C1              QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC
C2              QPDPRIIVLPICPGLQGPEYKAEMEAAEAALATDQDGRPRPLAASGHPAC
C3              QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC
C4              QPDPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC
C5              QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLAASGHPAC
C6              QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPAC
C7              QADPRIIVLPICPGLQGPEYKAEMEAAAAALATDQDGRPRPLTASGHPAC
C8              QADPRIIVMPICPTLQGPEYKAEMEAAAAALAIDQDGRPRPLAASGHPAC
                *.******:**** ************* **** *********:*******

C1              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C2              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C3              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C4              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C5              RLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C6              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C7              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
C8              QLCGVGIVGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIH
                :*************************************************

C1              AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGHSNGYSN
C2              AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN
C3              AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN
C4              AKQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN
C5              AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSN
C6              AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN
C7              ARQAAINNPPTGTEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSN
C8              AKQAAINNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSN
                *:********:**************************:***** ******

C1              GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT
C2              GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT
C3              GNSTPAPAPVASSQATATVATVAPS--AATAATAAATPQAATATDSPAAT
C4              GNSTPAPAPVASSQA--TVATVAP---SAATA-AAATPQAATATDSPVAT
C5              GNSAPAPAPVASSQA--AVATVAPT--AAAAA-AAATPQAATATDSPAAT
C6              GNSAPAPAPVASPQA--TVATAA---PVATSAAAAATPLAATATDSPAAT
C7              GNSAPAPAPVASPQA--TVATVATVAPVATTAAAAATPLAATATDSPAAT
C8              GNSAPAPAPVASPQATATVATSAATPAAAATAAIPATPLLATATDTPAPV
                ***:********.**  :*** *     *::*  .***  *****:*...

C1              ASSSDNMSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVT
C2              ASSSDNMSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVT
C3              ASSSDNMSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVT
C4              ASSSDNMSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVT
C5              ASSTDNMSAYVADEPSSIYGQISADSVAIAPPPPQPPTAGGGDQPFEYVT
C6              ATS-DNMSAYVADEPSSIYGQINTSSGVSGPPPPSQ----SGDQPFEYVT
C7              ATS-DNMSAYVADEPSSIYGQISTNSGASAPPPPSQ----SGDQPFEYVT
C8              ATS-DNMSAYVADEPSSIYGQINTNSGAVAPPPQASIVAGGSDQPFEYVT
                *:* ******************.:.* . .**.       ..********

C1              LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S
C2              LTGNVIRSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S
C3              LTGNVIRSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S
C4              LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S
C5              LTGNVIRSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQQS
C6              LTGNVIRSVQPPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQ-S
C7              LTGNVIRSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQS
C8              LTGNVIRSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-S
                *********:.***** ************************* ***** *

C1              PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQQQYNNQQKQQYRNSY
C2              PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSY
C3              PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSY
C4              PR--PGGQNPYATLPRSNVGQQGRNVRYQQQQQYN----NQQKQQYRNSY
C5              PRPAPGGQNPYATLPRSNVGQQGRNVRYQQQ---------QQKQQYRNSY
C6              PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN---NQQKQQYRNSY
C7              PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN---NQQKQQYRNSY
C8              PRPAPGGNNPYATLPRSNVGQQGRNVRYQQQQQQYN-NQQQQKQQYRNSY
                **  ***:***********************         **********

C1              PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSNYNNNNVYRAPGS
C2              PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSTYNNNNVYRAPGS
C3              PMGSNYSTPSQSPYITSNTNN-YSSSNSYNNNN--YSTYNNNNVYRAPGS
C4              PMGSNYSTPSQSPYITSNTNN-YSNSNTNNNNYSTYNNNNNNNVYRAPGS
C5              PMGSNYSTPSQSPYITSNTNN-YSSNNHNNNNN--YGSYNNNNVYRAPGS
C6              PMGSNYSTPSQSPYIITPTNNNYGSSNTNN-NYS---TYNNNNVYRAPG-
C7              PMGSNYSTPSQSPYIITPTNN-YSSSNTNNTNYS---TFNNNNVYRAPGS
C8              PMGSNYSTPSQSPYITSNTTN-YNNNNNNYSTY----NNNNNNVYRGTGS
                *************** : *.* *...*    .     . *******..* 

C1              ASAPAPVPSAAP----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF
C2              ANAPA--PSAAS----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF
C3              ANAPAPVPSAAP----TKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF
C4              ANAPAPAPAPS--AAPIKATAPFKAPIVPKSVIANAVNAAAP--PAPAVF
C5              ANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIANAVNAAAP--PAPAVF
C6              -SAPAP--------AAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPAVF
C7              ANATAP--------APVKAIAPLKAPIAPKSVIANAFNAAAPPAPAPAVF
C8              ANAPAPAPAPFA--APIKATAPFKTPIAPKSVIANAVNAAAP--PAPAVF
                 .*.*            :* **:*:**.********.*****  ******

C1              PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C2              PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C3              PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C4              PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C5              PPDLSDLNLNSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C6              PPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C7              PPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGRGILNKAAGPGV
C8              PPDLSDLNLNSNVPDSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGV
                ****.******** :*   *******************************

C1              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C2              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C3              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C4              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C5              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C6              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C7              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
C8              RIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKG
                **************************************************

C1              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C2              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKVFG
C3              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C4              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C5              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C6              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C7              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
C8              DLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFG
                ***********************************************:**

C1              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C2              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C3              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C4              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C5              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C6              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C7              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
C8              NRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQC
                **************************************************

C1              FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo---------
C2              FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooooo---
C3              FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooo-----
C4              FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo
C5              FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooo------
C6              FNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooooooooo
C7              FNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooooooo-
C8              FNCTFCKQNLEGQSFYNKGGRPFCKNHAR-------------
                *****************************             




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [64910]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [64910]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [64910]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [64910]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  959 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  959 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PV/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [64910]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2