--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Dec 09 16:53:19 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/442/Zasp52-PS/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -5894.27         -5908.92
2      -5894.00         -5909.32
--------------------------------------
TOTAL    -5894.13         -5909.14
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PS/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.337120    0.000698    0.288872    0.391120    0.336040   1401.20   1419.32    1.000
r(A<->C){all}   0.054938    0.000127    0.033617    0.076684    0.054361   1218.07   1228.13    1.000
r(A<->G){all}   0.208159    0.000621    0.159461    0.255958    0.207535    739.92    874.46    1.000
r(A<->T){all}   0.122986    0.000462    0.082417    0.164252    0.121508    863.91    915.46    1.001
r(C<->G){all}   0.055716    0.000119    0.035824    0.078084    0.055062    871.39   1013.33    1.000
r(C<->T){all}   0.456015    0.001068    0.393937    0.519521    0.456872    913.59    981.55    1.000
r(G<->T){all}   0.102187    0.000397    0.066634    0.141893    0.101294    983.22   1026.71    1.000
pi(A){all}      0.248442    0.000072    0.232675    0.266109    0.248269   1157.37   1169.87    1.000
pi(C){all}      0.333492    0.000085    0.316228    0.351799    0.333555   1302.05   1307.64    1.000
pi(G){all}      0.249003    0.000070    0.233331    0.266297    0.248857   1136.34   1223.01    1.000
pi(T){all}      0.169062    0.000050    0.155610    0.183453    0.168832   1210.92   1238.14    1.000
alpha{1,2}      0.136252    0.001091    0.071642    0.202108    0.136573   1162.90   1247.21    1.001
alpha{3}        2.833527    0.854385    1.146104    4.504228    2.711226   1254.39   1355.52    1.000
pinvar{all}     0.535474    0.002201    0.439914    0.623721    0.539412    974.54   1085.48    1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4947.461527
Model 2: PositiveSelection	-4947.461527
Model 0: one-ratio	-5000.539837
Model 3: discrete	-4947.453882
Model 7: beta	-4948.380097
Model 8: beta&w>1	-4947.46783


Model 0 vs 1	106.15661999999975

Model 2 vs 1	0.0

Model 8 vs 7	1.824534000001222
>C1
MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQPQQQYNQHQQHYHQQQQ
QQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN
LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEGYVP
VPIKPNTKLSASTISSALNSHGYGGHSNGYSNGNSTPAPAPVNQGYARPF
GAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQGRNVRYQQQ
QQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSSSNSYNNN
NYSNYNNNNVYRAPGSASAPAPVPSAAPTKATAPFKAPIVPKSVIANAVN
AAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGIL
NKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQD
IGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTC
GQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEAL
NHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooo
>C2
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLRVEETGQSTPAFGNSHYEHDAPQQVQQQQQPQQQYNQHQQHYHQ
QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK
DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG
YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA
RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQGRNVRY
QQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSSSNSYNN
NNYSTYNNNNVYRAPGSANAPAPSAASTKATAPFKAPIVPKSVIANAVNA
AAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILN
KAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDI
GFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCG
QCGKVFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALN
HNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooooo
>C3
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQPQQQYNQHQQHYHQ
QQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIK
DKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEG
YVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVNQGYA
RPFGAAAPKSPVSYPPQQQQQSPRPAPGGQNPYATLPRSNVGQQGRNVRY
QQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSSSNSYNN
NNYSTYNNNNVYRAPGSANAPAPVPSAAPTKATAPFKAPIVPKSVIANAV
NAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGI
LNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQ
DIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFT
CGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEA
LNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooooo
>C4
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQQYQQPQQQYNQHQQHYH
QQQQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF
VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPT
GTEGYVPVPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSTPAPAPVN
QGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQNPYATLPRSNVGQQGRNV
RYQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSNSNTNNN
NYSTYNNNNNNNVYRAPGSANAPAPAPAPSAAPIKATAPFKAPIVPKSVI
ANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKR
GRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCR
RPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHP
ECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDR
WVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARo
>C5
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ
QHYHQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVF
VRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPS
GTEGYVPVPIKPNTKLSASTISSALNSHGYGGSSNGYSNGNSAPAPAPVN
QGYARPFGAAAPKSPVSYPPQQQQQQSPRPAPGGQNPYATLPRSNVGQQG
RNVRYQQQQQKQQYRNSYPMGSNYSTPSQSPYITSNTNNYSSNNHNNNNN
YGSYNNNNVYRAPGSANAPAPAAAPAPLAAPTRATAPFKAPIVPKSVIAN
AVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGR
GILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRP
LQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPEC
FTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWV
EALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooo
>C6
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEESGQSTPAFGNSHYEHDAPRQQQQPQQQYNQQQQHYHQQQQ
QQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKN
LHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPSGTEGYVP
VPIKPNTKLSASTISSALNSHGYGGNSNGYSNGNSAPAPAPVNQGYARPF
GAAAPKSPVSYPVQQQQQSPRPAPGGNNPYATLPRSNVGQQGRNVRYQQQ
QQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPTNNNYGSSNTNNNYST
YNNNNVYRAPGSAPAPAAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPA
VFPPDLGDLNLNSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGP
GVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEE
KGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKI
FGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHS
QCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooooooooooo
>C7
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHCEHDAPRQQQQQQPQQQQQYNQQQQHYH
QQQQQQQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFV
RIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAAINNPPTG
TEGYVPVPIKPNTKLSASTISSALNTHGYGGNSNGYSNGNSAPAPAPVNQ
GYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNPYATLPRSNVGQQGR
NVRYQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIITPTNNYSSSNT
NNTNYSTFNNNNVYRAPGSANATAPAPVKAIAPLKAPIAPKSVIANAFNA
AAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGKSAGAFGATSAPKRGR
GILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRP
LQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPEC
FTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWV
EALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARooo
>C8
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQQQQPQQQYNQHQQHHQQ
QQQLQQQSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITGVFVRI
KDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNPPSGTE
GYVPVPIKPNTKLSATTISSALNSHGYGGSNSNGYSNGNSAPAPAPVNQG
YARPFGAAAPKSPVSYPPQQQQQSPRPAPGGNINNNNPYATLPRSNVGQQ
GRNVRYQQQQQQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIISTTNNNNY
NNNYSNYNNNNFNRAPGSAPAPAVAQAPAPSAAPIKATAPFKAPIAPKSV
IANAVNAAAPPAPAVFPPDLSDLNLNSNLDDSPGAGNKGAGAFGATSAPK
RGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNC
RRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFH
PECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGD
RWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR
>C9
MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
EVLKFLREEETGQSTPAFGNSHYEHDAPQQQQQPQQQQYNQQQHQQQHYH
QQHHQQQQQQQLSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECERLITG
VFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAAINNP
PSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNSAPAPV
NQGYARPFGAAAPKSPVASYPPQQQQQSPRPAPGGNNNFNNNNAYATLPR
SNVGQQGRNVRYQQQQQHQQYNNQQKQQYRNSYPMGSNYSTPSQSPYIIS
STTNNNNYSSYNNNNVYRAPGSAPAPAPAPSAAPIKAKAPIAPKSVIANA
VNAAAPPAPAVFPPDLSDLNLNSNVDDSAGAGNKSAGAFGATSAPKRGRG
ILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPL
QDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECF
TCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEAGDRWVE
ALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHARoooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=9, Len=832 

C1              MAQPQLLQIKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C2              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C3              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C4              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C5              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C6              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C7              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C8              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
C9              MAQPQLLQVKLSRFDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQ
                ********:*****************************************

C1              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C2              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C3              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C4              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C5              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C6              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C7              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C8              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
C9              PGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPT
                **************************************************

C1              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C2              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C3              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C4              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C5              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C6              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C7              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFANGGDGGVKS
C8              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
C9              GNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKS
                ****************************************:*********

C1              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C2              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C3              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C4              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C5              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C6              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C7              IVNKQYNTPVGIYSEESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C8              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
C9              IVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRS
                **************:***********************************

C1              EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQ---PQQQYN--QHQ
C2              EVLKFLRVEETGQSTPAFGNSHYEHDAP---QQVQQQQQPQQQYN--QHQ
C3              EVLKFLREEETGQSTPAFGNSHYEHDAP---QQLQQQQQPQQQYN--QHQ
C4              EVLKFLREEETGQSTPAFGNSHYEHDAPQ--QQQQQYQQPQQQYN--QHQ
C5              EVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQQQQQQQPQQQYNQHQHQ
C6              EVLKFLREEESGQSTPAFGNSHYEHDAPR--QQQQPQ----QQYN--QQQ
C7              EVLKFLREEETGQSTPAFGNSHCEHDAPR--QQQQQQPQQQQQYN--QQQ
C8              EVLKFLREEETGQSTPAFGNSHYEHDAPQ--QQQQ--QQQPQQQY--NQH
C9              EVLKFLREEETGQSTPAFGNSHYEHDAPQ--QQQQPQQQQYNQQQ--HQQ
                ******* **:*********** *****   ** *      :*    :::

C1              QHYHQQ--QQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C2              QHYHQQ--QQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C3              QHYHQQ--QQQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C4              QHYHQQ--QQQQQQQQSSATRHVSAPVNSPKPPSTGGLPTGQNICTECER
C5              QHYHQQ--QQQQS----STTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C6              QHYHQQ--QQQQQ---SSATRHVSAPVNSPKPPSTGGLPTGQNICTECER
C7              QHYHQQ--QQQQQQQ-SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C8              QQHHQQQQQLQQQ---SSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
C9              QHYHQQHHQQQQQQQLSSTTRHVSAPVNSPKPPSTGGLPTGQNICTECER
                *::***  * **.    *:*******************************

C1              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C2              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C3              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C4              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C5              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C6              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C7              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHARQAA
C8              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
C9              LITGVFVRIKDKNLHVECFKCATCGTSLKNQGYYNFNNKLYCDIHAKQAA
                **********************************************:***

C1              INNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-HSNGYSNGNST
C2              INNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNST
C3              INNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNST
C4              INNPPTGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNST
C5              INNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-SSNGYSNGNSA
C6              INNPPSGTEGYVPVPIKPNTKLSASTISSALNSHGYGG-NSNGYSNGNSA
C7              INNPPTGTEGYVPVPIKPNTKLSASTISSALNTHGYGG-NSNGYSNGNSA
C8              INNPPSGTEGYVPVPIKPNTKLSATTISSALNSHGYGGSNSNGYSNGNSA
C9              INNPPSGTEGYVPVPIKPNTKLSASTISTALNSHGYGGSNSNGYSNGNS-
                *****:******************:***:***:*****  ********* 

C1              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------
C2              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------
C3              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGQN------
C4              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPR--PGGQN------
C5              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQQSPRPAPGGQN------
C6              PAPAPVNQGYARPFGAAAPKSPVS-YPVQQQQQ-SPRPAPGGNN------
C7              PAPAPVNQGYARPFGAAAPKSPVS-YPVQQQQQQSPRPAPGGNN------
C8              PAPAPVNQGYARPFGAAAPKSPVS-YPPQQQQQ-SPRPAPGGN--INNNN
C9              -APAPVNQGYARPFGAAAPKSPVASYPPQQQQQ-SPRPAPGGNNNFNNNN
                 **********************: ** ***** ***  ***:       

C1              PYATLPRSNVGQQGRNVRYQQQQQQQQQYNNQQKQQYRNSYPMGSNYSTP
C2              PYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSYPMGSNYSTP
C3              PYATLPRSNVGQQGRNVRYQQQQQQQ--YNNQQKQQYRNSYPMGSNYSTP
C4              PYATLPRSNVGQQGRNVRYQQQ--QQ--YNNQQKQQYRNSYPMGSNYSTP
C5              PYATLPRSNVGQQGRNVRYQQQ---------QQKQQYRNSYPMGSNYSTP
C6              PYATLPRSNVGQQGRNVRYQQQQQQ---YNNQQKQQYRNSYPMGSNYSTP
C7              PYATLPRSNVGQQGRNVRYQQQQQQ---YNNQQKQQYRNSYPMGSNYSTP
C8              PYATLPRSNVGQQGRNVRYQQQQQ--QQYNNQQKQQYRNSYPMGSNYSTP
C9              AYATLPRSNVGQQGRNVRYQQQQQH-QQYNNQQKQQYRNSYPMGSNYSTP
                .*********************         *******************

C1              SQSPYITSNTNNYSSSNSYNNNNYSNYNNNN---VYRAPGSASAPAPV--
C2              SQSPYITSNTNNYSSSNSYNNNNYSTYNNNN---VYRAPGSANAPA----
C3              SQSPYITSNTNNYSSSNSYNNNNYSTYNNNN---VYRAPGSANAPAPV--
C4              SQSPYITSNTNNYSNSN-TNNNNYSTYNNNNNNNVYRAPGSANAPAPAPA
C5              SQSPYITSNTNNYSSNNHNNNNNYGSYNNNN---VYRAPGSANAPAPAAA
C6              SQSPYIITPTNNNYGSSNTNN-NYSTYNNNN---VYRAPGSA--PAP---
C7              SQSPYIITPTNN-YSSSNTNNTNYSTFNNNN---VYRAPGSANATAP---
C8              SQSPYIIS-----TTNNNNYNNNYSNYNNNN---FNRAPGSAPAPAVAQA
C9              SQSPYIIS-----STTNN---NNYSSYNNNN---VYRAPGSAPAP----A
                ****** :       ..     **..:****   . ******  .     

C1              --PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C2              --PSAASTKATAPFKAPIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C3              --PSAAPTKATAPFKAPIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C4              --PSAAPIKATAPFKAPIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C5              PAPLAAPTRATAPFKAPIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C6              -----AAVKATAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNL
C7              -----APVKAIAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNL
C8              PAPSAAPIKATAPFKAPIAPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
C9              PAPSAAPIKA----KAPIAPKSVIANAVNAAAP--PAPAVFPPDLSDLNL
                     *. :*    ****.********.*****  **********.****

C1              NSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C2              NSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C3              NSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C4              NSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C5              NSNVDNSP--GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C6              NSNVDDSAGPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C7              NSNVDDSVGAGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C8              NSNLDDSP--GAGNKGAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
C9              NSNVDDSA--GAGNKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCN
                ***:*:*   ***.*.**********************************

C1              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C2              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C3              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C4              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C5              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C6              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C7              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C8              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
C9              VQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFE
                **************************************************

C1              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C2              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKVFGNRPFFLEDG
C3              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C4              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C5              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C6              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C7              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C8              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
C9              KYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDG
                **************************************:***********

C1              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C2              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C3              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C4              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C5              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C6              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C7              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C8              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
C9              NAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQN
                **************************************************

C1              LEGQSFYNKGGRPFCKNHARoooooo------
C2              LEGQSFYNKGGRPFCKNHARooooooo-----
C3              LEGQSFYNKGGRPFCKNHARooooo-------
C4              LEGQSFYNKGGRPFCKNHARo-----------
C5              LEGQSFYNKGGRPFCKNHARooo---------
C6              LEGQSFYNKGGRPFCKNHARoooooooooooo
C7              LEGQSFYNKGGRPFCKNHARooo---------
C8              LEGQSFYNKGGRPFCKNHAR------------
C9              LEGQSFYNKGGRPFCKNHARoooo--------
                ********************            




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  793 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  793 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PS/batch/allfiles/tcoffee/input.fasta.prot.