--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Dec 09 16:07:17 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/442/Zasp52-PQ/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -12851.47 -12864.51 2 -12851.63 -12862.78 -------------------------------------- TOTAL -12851.55 -12863.98 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.443690 0.000605 0.398780 0.492778 0.442410 1396.65 1448.83 1.000 r(A<->C){all} 0.062777 0.000084 0.044637 0.079665 0.062119 1069.28 1131.44 1.001 r(A<->G){all} 0.274149 0.000385 0.235782 0.311785 0.274003 662.20 785.17 1.000 r(A<->T){all} 0.162599 0.000336 0.126774 0.197658 0.162334 1023.68 1078.54 1.000 r(C<->G){all} 0.055190 0.000048 0.040801 0.068108 0.055137 1203.18 1213.70 1.000 r(C<->T){all} 0.379518 0.000459 0.339706 0.422076 0.379741 794.62 839.95 1.000 r(G<->T){all} 0.065768 0.000113 0.046641 0.087392 0.065161 1028.09 1093.38 1.000 pi(A){all} 0.232503 0.000030 0.222060 0.243815 0.232458 1041.26 1107.72 1.002 pi(C){all} 0.331995 0.000037 0.320124 0.343688 0.331959 768.91 792.64 1.000 pi(G){all} 0.258660 0.000031 0.247401 0.268992 0.258719 876.09 1028.45 1.000 pi(T){all} 0.176842 0.000022 0.167203 0.185603 0.176804 1022.48 1096.09 1.000 alpha{1,2} 0.057483 0.001013 0.000371 0.105579 0.059822 898.78 1004.30 1.000 alpha{3} 4.916040 1.288153 2.873569 7.147626 4.785973 1281.51 1391.25 1.000 pinvar{all} 0.382425 0.001166 0.318534 0.452325 0.380581 1273.42 1287.36 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -11697.793929 Model 2: PositiveSelection -11697.567781 Model 0: one-ratio -11796.367735 Model 3: discrete -11697.455123 Model 7: beta -11698.291776 Model 8: beta&w>1 -11697.473095 Model 0 vs 1 197.14761200000066 Model 2 vs 1 0.4522959999994782 Model 8 vs 7 1.6373620000013034
>C1 MSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVI RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG QNPYATLPRSNVGQQGGEAVEELQPEFEEEDCYEMDIEVALAASRQSQRG SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA RLDPQPVVGTSANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTT TTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYASTQDSVQDYPSGRR SAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFN DEPEIKELPQLPAELETIPEASEAVEDREGLVIEQRCQILESERKFQPTP EIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPR PCGDDFEAEAAAAEAAKTQEVPEPLPPQVSAAPPATVSVEPSPAPLRESP PRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLRE DYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCT APERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQS VEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPRASIV SALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQREL SNQQQNLLSQQQLQQSKLLQLQQCVQSQELQQQVQHLTQKSQQQPPQANQ QQQQQQQQRGTQQQQHSQVTQRTQQQQQQVPQQVTQQQQQEHSLLSQTTL AETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPT SIPVRPSAIAVQSSYCSSQFDVHELIEETAEELEHSEVLFPPPSPLSHLT KQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVD APKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDR SGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVF EECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKS NILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITE QRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFER TQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYG KTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFD SKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGY QATTSSVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAIT TTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSASAPAPVPSAAPT KATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGA GGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALG RIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAG KIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELF TTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGR PFCKNHARooooooooooooooo >C2 MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI RSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG QNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQRG SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA RLDPQPEVGTSANGAPQWQSYSAPQLTTASAHQLAEQESSSDSYTSTSTT TTTTSEEYAAKVQAYQMQEQSGSEFDYQVDYGSTQDSIQDYPSGRRSAQE CVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFNDEPE IKELPQLPVELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEIKI EIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGD DFEAEAAAAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPLKESPPRGS RLSQAMVTAPEFELKFAPPADQGIPLPEETKPYMPPPIDTKPYLREDYRP KSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLNMCDALCTAPER GYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVEYY ETRRDQPRKSSAFAAMQAFQPSREPLSSNTASNAGSVADTPRASIVSALK EETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQ QSLLSQQQLQQSKLLQLQQCVQSQELKQQMQHLTQKSQQQPPQANQQQQQ QQQQRGTQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEHSLLSQTTLAETQ TLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPTSIPV RPSAIAVQSSYCSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKA VQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAP VTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDRSGPVT MAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSA THARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKSNILSV SGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITEQRVGN LNIQQREQSSQLQQQALSQTQSQTRSQVGNTQIERRRKVTEEFERTQSAK TIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYGKTGFV ASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPL KPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGYQATTS SVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAITTTTNN QATTAYRSSNGSITKPNLASRPSIASITAPGSANAPAPSAASTKATAPFK APIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGA FGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDH FICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCL NAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTKCFAC GFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHA Roooooooooooooooooooooo >C3 MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI RSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG QNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQRG SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA RLDPQPEVGTSATGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTT TTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQDSIQDYPSGRRSAQECVD SLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFNDEPEIKE LPQLPVELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEIKIEIA PVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGDDFE AEAADAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPLKESPPRGSRLS QAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLREDYRPKSP FVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYT PLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVEYYETR RDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPRASIVSALKEET DLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQSL LSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKSQQQPPQANQQQQQQQQ QRGTQQQQHSQVTQRTQQQQVSQQVTQQQQQEHSLLSQTTLAETQTLQAN AQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPAPAPAPTSTP VRPSAIAVQSSYCSSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQG KAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPK APVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDRSGP VTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEEC SATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKSNIL SVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITEQRV GNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFERTQS AKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYGKTG FVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKF PLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGYQAT TSSVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAITTTT NNQATTAYRSSNGSITKPNLASRPSIASITAPGSANAPAPVPSAAPTKAT APFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGK SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC KNHARoooooooooooooooooo >C4 MSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVI RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQN PYATLPRSNVGQQGGEAVEELQPEFEEEDCFEMDIEVALAASRQSQRGSS FTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQEVPPLPPGGATARL DPQPQVGASANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTTTT TTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYGSTQDSMQDYPSGRRSA QECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPSTRRVVFNDE PEIKELPQLPDELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEI KIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPC GDDFEAEAAAAEAAKAREVPAPPPPQVSSAQPAIDPVEPSPAPLRESPPR GSRLTQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLREDY RPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAP ERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVE FYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVPDTPRDSIVSA LKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSN QQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKAQQQPPQANQQQ QLQLQQQQQRGSQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEQEHSLLSQ TTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPATTSTAFAPAPAP APSLAPVPTSTPVRPSAFAVQSSYCNSQFDAHELIEETVEELEHSPVLFP PPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELR ENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQL SVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPF YQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAP RMREPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSF SQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERR RKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSISQAQSQAQYQSQNQS DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF PNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTAPPPGFLQQQQQQ QQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASASASVA RSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGS ANAPAPAPAPSAAPIKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDL SDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCN SCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEY CFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFL EDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFC KQNLEGQSFYNKGGRPFCKNHAR >C5 MSAYVADEPSSIYGQINTSSGVSGPPPPSQSGDQPFEYVTLTGNVIRSVQ PPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQSPRPAPGGNNPY ATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQRGSSFT WPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGATARLDP QPQVETSAPGVPQWQSYSAPQLSNRQLAEQESSSDSYTSTSTTTTTTSEE YQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIQESASGRRSAQECVD SLSVPLSTYKLVDMVREVTPSPVTTPTQTPAPAPSTRRVVFNDEPEIKEL PQLSGELETIPEASEAVEDREDREGLVIEQRCQILESERKFQPTPEIKIE IAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGDD FEAEAAAAEAARAQEAPALPPPPPPPPAPVEPSPAPLRESPPRGTRLSQA MVTAPEFELKFAPPADQGIPLPEETEPYMPPPIEIKPYLREDYRPKSPFV SALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYTPL NPENAMHRVDEEQKQQELKKHEFQVLDHEEELGIRPEPPQSVEYYETRKD QPRKSSAFAAMQAFQPSREPLSSNSVSNAGSVVDTPRASIVSALKEETDL EYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQSLLS QQQLQQSKLLQLQQCVQSQELQQQVQQLSQKSQRQEQHVLTQQQQPPQQQ QQHSQITPRTQQQQVSQQQQQPVTQQQHRHSLLSQTETQTPQANAQSQSS ASYSSKATACSNSSSTVPPATSTACAPAPVQAPAPAPAPAPAPTLAPVST PVRPPPIAVQSSYCSTQFDAHELIEETAEELEHSDVLFPPPSPLSHLTKQ GKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAP KAPVTSDSSTVHKPIAIAQAAPPTTVVAPSRERETVKPRPQLSVPIIVED RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE RTQSAKTIEIRTGSQSVTQSRGQSQAISQNHAQSQNQSDTERRSSYGKTG FVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKF PLKPASVESTVPGYGAAPAATDKLTAPPPGFLQQQQQRSAFSGYQATTSA VQQSSYASSSKATSSSLSSSSASASTSASVARSSQSLTQASAITTTTNNQ ATKAFRSSNGSTINANTASRPSIASITAPGSAPAPAAVKATAPLKAPIAP KSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGKSAGAF GATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHF ICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLN AIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACG FPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR ooooooooooooooooooooooo >C6 MSAYVADEPSSIYGQISTNSGASAPPPPSQSGDQPFEYVTLTGNVIRSVQ APGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNP YATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQRGSSF TWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGATARLD PQPQGEATAQGAPQWQSYSAPQLTNRQLAEQESSSDSYTSTSTTTTTTSE EYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIHEYASGRRSAQECV DSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAPSTRRVVFNDEPEIKE LPQLSGELETIPEASEGVEDREDREGLVIEQRCQILESERKFQPTPEIKI EIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGD DFEAEAAAAEAARAQEVPAPPPPPPPPPAPVEPSPAPLRESPPRGTRLSQ AMVTAPEFELKFAPPADQGIPLPEETVPYMPPPIEIKPYLREDYRPKSPF VSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYTP LNPENAMHRVDEEQKQQELKKNEFQVLDHEEELGIRPEPPQSVEFYETRR DQPRKSSAFAAMQAFQPSREPLSSNSASNAGSVVATPRDSIVSALREETD LEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQNLL NQQQLQQSKLLQLQQCAQSQELQQQVQQLSQKSQQQEQHLLTQQQQPPQQ QQQQHSQVTQRTQQQQVSHQQQQQVTQQQHRHSLLSQTETQTLQANAQSQ SSASYSSKATACSNSSSTVPPATSTAFAPAPAPAPAPVSTPVRPPALAVQ SSYCSTQYDAHELFEETAEELEHSPILFPPPSPLSHLTKQGKAVQSGLHK ADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSST VHRPIAIAQVAPPTTVVAPSRERERETPKPRPQLSVPIIVEDRSGPVTMA FQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASH ARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSG APRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLS IQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTI EIRTGSQSVTQSRGQSQAISQSQAQSQAQSQVQSQVQSQNQSDTERRSSY GKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCFPNLRSPTF DSKFPLKPASVESTVPGYGTAPAATDKLMAPPPGFLQQQQQQQQQRSAFS GYQATTSAVQQSSYASSSKATSSSLSSSSASASASASVARSSQSLTQASA ITTTTNNQATTAFRSSNGSTIKPNPASRPSIASITAPGSANATAPAPVKA IAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGA GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITA LGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKC AGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNE LFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKG GRPFCKNHARooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=1828 C1 MSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVI C2 MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI C3 MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI C4 MSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVI C5 MSAYVADEPSSIYGQINTSSGVSGPPPP----SQSGDQPFEYVTLTGNVI C6 MSAYVADEPSSIYGQISTNSGASAPPPP----SQSGDQPFEYVTLTGNVI ****************.:.* . .**.* : .*************** C1 RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG C2 RSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG C3 RSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG C4 RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPR--PG C5 RSVQPPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQ-SPRPAPG C6 RSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPG ***:.***** ************************* ***** *** ** C1 GQNPYATLPRSNVGQQGGEAVEELQPEFEEEDCYEMDIEVALAASRQSQR C2 GQNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQR C3 GQNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQR C4 GQNPYATLPRSNVGQQGGEAVEELQPEFEEEDCFEMDIEVALAASRQSQR C5 GNNPYATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQR C6 GNNPYATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQR *:**************** .*************:**************** C1 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT C2 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT C3 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT C4 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQEVPPLPPGGAT C5 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGAT C6 GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGAT **********************************:****:********** C1 ARLDPQPVVGTSANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST C2 ARLDPQPEVGTSANGAPQWQSYSAPQLTTASAHQLAEQESSSDSYTSTST C3 ARLDPQPEVGTSATGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST C4 ARLDPQPQVGASANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST C5 ARLDPQPQVETSAPGVPQWQSYSAPQLS---NRQLAEQESSSDSYTSTST C6 ARLDPQPQGEATAQGAPQWQSYSAPQLT---NRQLAEQESSSDSYTSTST ******* ::* *.***********: :***************** C1 TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYASTQDSVQDYPSGR C2 TTTTTSEEY----AAKVQAYQMQEQSGSEFDYQVDYGSTQDSIQDYPSGR C3 TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDY-------QDSIQDYPSGR C4 TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYGSTQDSMQDYPSGR C5 TTTTTSEEYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIQESASGR C6 TTTTTSEEYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIHEYASGR ********* **::*************** ***::: .*** C1 RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF C2 RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF C3 RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF C4 RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPSTRRVVF C5 RSAQECVDSLSVPLSTYKLVDMVREVTPSPVTTPTQTPAP-APSTRRVVF C6 RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAP-APSTRRVVF **********:***************************** **:****** C1 NDEPEIKELPQLPAELETIPEASEAVEDRE---GLVIEQRCQILESERKF C2 NDEPEIKELPQLPVELETIPEASEAVEDRE---GLVIEQRCQILESERKF C3 NDEPEIKELPQLPVELETIPEASEAVEDRE---GLVIEQRCQILESERKF C4 NDEPEIKELPQLPDELETIPEASEAVEDRE---GLVIEQRCQILESERKF C5 NDEPEIKELPQLSGELETIPEASEAVEDREDREGLVIEQRCQILESERKF C6 NDEPEIKELPQLSGELETIPEASEGVEDREDREGLVIEQRCQILESERKF ************. **********.***** ***************** C1 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC C2 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC C3 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC C4 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC C5 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC C6 QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC ************************************************** C1 PFPRPCGDDFEAEAAAAEAAKTQEVPEPLPPQVSAAPPATVSVEPSPAPL C2 PFPRPCGDDFEAEAAAAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPL C3 PFPRPCGDDFEAEAADAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPL C4 PFPRPCGDDFEAEAAAAEAAKAREVPAPPPPQVSSAQPAIDPVEPSPAPL C5 PFPRPCGDDFEAEAAAAEAARAQEAPALPPP----PPPPPAPVEPSPAPL C6 PFPRPCGDDFEAEAAAAEAARAQEVPAPPPP----PPPPPAPVEPSPAPL *************** ****:::*.* ** . *. .******** C1 RESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP C2 KESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETKPYMPPPIDTKP C3 KESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP C4 RESPPRGSRLTQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP C5 RESPPRGTRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIEIKP C6 RESPPRGTRLSQAMVTAPEFELKFAPPADQGIPLPEETVPYMPPPIEIKP :******:**:*************************** *******: ** C1 YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD C2 YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLNMCD C3 YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD C4 YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD C5 YLREDYRPKSPFVSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCD C6 YLREDYRPKSPFVSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCD ********************:*************************.*** C1 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE C2 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE C3 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE C4 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE C5 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKHEFQVLDHEEELGIRPE C6 ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKNEFQVLDHEEELGIRPE *********************************.**************** C1 PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPR C2 PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTASNAGSVADTPR C3 PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPR C4 PPQSVEFYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVPDTPR C5 PPQSVEYYETRKDQPRKSSAFAAMQAFQPSREPLSSNSVSNAGSVVDTPR C6 PPQSVEFYETRRDQPRKSSAFAAMQAFQPSREPLSSNSASNAGSVVATPR ******:****:*************************:.****** *** C1 ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL C2 ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL C3 ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL C4 DSIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL C5 ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL C6 DSIVSALREETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL ******:****************************************** C1 QRELSNQQQNLLSQQQLQQSKLLQLQQCVQSQELQQQVQHLTQKSQQQPP C2 QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELKQQMQHLTQKSQQQPP C3 QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKSQQQPP C4 QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKAQQQPP C5 QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQVQQLSQKSQRQEQ C6 QRELSNQQQNLLNQQQLQQSKLLQLQQCAQSQELQQQVQQLSQKSQQQEQ *********.**.***************.*****:**:*:*:**:*:* C1 QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQQQVPQQVTQQQQQE-- C2 QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQQQVSQQVTQQQQQE-- C3 QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQ--VSQQVTQQQQQE-- C4 QANQQQQLQLQQQQQRGSQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEQE C5 HVLTQQQ---QPPQQ---QQQ-HSQITPRTQQQQVSQQQQQPVTQQQHR- C6 HLLTQQQ---QPPQQ---QQQQHSQVTQRTQQQQVSHQQQQQVTQQQHR- : *** * ** *** ***:* ****** ** ***. C1 HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF C2 HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF C3 HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF C4 HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPATTSTAF C5 HSLLSQT---ETQTPQANAQSQSSASYSSKATACSNSSSTVPPA-TSTAC C6 HSLLSQT---ETQTLQANAQSQSSASYSSKATACSNSSSTVPPA-TSTAF ******* **** ***************************** **** C1 APAPAPAP--------------TSIPVRPSAIAVQSSYCSSQFDVHELIE C2 APAPAPAP--------------TSIPVRPSAIAVQSSYCS-QFDAHELIE C3 APAPAPAPAPAPAP--------TSTPVRPSAIAVQSSYCSSQFDAHELIE C4 APAPAPAPSLAPVP--------TSTPVRPSAFAVQSSYCNSQFDAHELIE C5 APAPVQAPAPAPAPAPAPTLAPVSTPVRPPPIAVQSSYCSTQFDAHELIE C6 APAPAPAPAP------------VSTPVRPPALAVQSSYCSTQYDAHELFE ****. ** .* ****..:*******. *:*.***:* C1 ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP C2 ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP C3 ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP C4 ETVEELEHSPVLFPPPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLP C5 ETAEELEHSDVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP C6 ETAEELEHSPILFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP **.****** :*************:************************* C1 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT C2 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT C3 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT C4 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT C5 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHKPIAIAQAAPPTT C6 TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAIAQVAPPTT *************************************:* ***.*.*** C1 VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT C2 VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT C3 VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT C4 VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT C5 VVAPSRERE--TVKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT C6 VVAPSRERERETPKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT ********* : *********************************** C1 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR C2 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR C3 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR C4 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR C5 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDR C6 PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDR *******************************:*:******** ******* C1 TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY C2 TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY C3 TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY C4 TRSPAPGPPPNPLNAIRAPRMREPETKSNILSVSGGPRLQTGSITTGQSY C5 TRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSY C6 TRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSY *********************:***.**.******.************** C1 QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQ C2 QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAL C3 QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQ C4 QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLNIQQREQSSQLQQQAQ C5 QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQ C6 QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQ ******************:.**************.************** C1 SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ C2 SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ C3 SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ C4 SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQ C5 SQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQ C6 SQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQ **:*****************************************:**:.* C1 SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC C2 SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC C3 SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC C4 SQSISQAQSQAQYQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC C5 SQAISQNHAQ------------SQNQSDTERRSSYGKTGFVANQAKRLSC C6 SQAISQSQAQSQAQSQVQSQVQSQNQSDTERRSSYGKTGFVANQAKRLSC **:*** ::* ********************.******* C1 MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV C2 MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV C3 MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV C4 MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV C5 LEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTV C6 LEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTV :*:*****************************************..** * C1 PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA C2 PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA C3 PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA C4 PGYTTVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA C5 PGYGAAPAATDKLTAPPPGFLQQQQQ----RSAFSGYQATTSAVQQSSYA C6 PGYGTAPAATDKLMAPPPGFLQQQQQQQQQRSAFSGYQATTSAVQQSSYA *** :.****. * ************ ************:*****:* C1 SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT C2 SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT C3 SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT C4 SSSKATTSSLSSSSASASASASASASVARSSQSLTQASAITTTTNNQATT C5 SSSKATSSSLSSS----SASASTSASVARSSQSLTQASAITTTTNNQATK C6 SSSKATSSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT ******:****** *****:**************************. C1 AYRSSNGSITKPNLASRPSIASITAPGSASAPAPV--PSAAPTKATAPFK C2 AYRSSNGSITKPNLASRPSIASITAPGSANAPA----PSAASTKATAPFK C3 AYRSSNGSITKPNLASRPSIASITAPGSANAPAPV--PSAAPTKATAPFK C4 AYRSSNGSITKPNLASRPSIASITAPGSANAPAPAPAPSAAPIKATAPFK C5 AFRSSNGSTINANTASRPSIASITAPG--SAPAP------AAVKATAPLK C6 AFRSSNGSTIKPNPASRPSIASITAPGSANATAP------APVKAIAPLK *:****** :.* ************* .*.* *. ** **:* C1 APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK C2 APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK C3 APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK C4 APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK C5 APIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGK C6 APIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGK ***.********.***** **********.*********:* ***** C1 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW C2 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW C3 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW C4 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW C5 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW C6 SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW ************************************************** C1 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK C2 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK C3 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK C4 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK C5 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK C6 CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK ************************************************** C1 GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK C2 GDCLNAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTK C3 GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK C4 GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK C5 GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK C6 GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK ***********************:************************** C1 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC C2 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC C3 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC C4 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC C5 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC C6 CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC ************************************************** C1 KNHARooooooooooooooo-------- C2 KNHARoooooooooooooooooooooo- C3 KNHARoooooooooooooooooo----- C4 KNHAR----------------------- C5 KNHARooooooooooooooooooooooo C6 KNHARooooooooooooo---------- ***** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 6 SEQUENCES [PROTEIN] Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [62486] Library Relaxation: Multi_proc [72] lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FI