--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Dec 09 16:07:17 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/442/Zasp52-PQ/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1     -12851.47        -12864.51
2     -12851.63        -12862.78
--------------------------------------
TOTAL   -12851.55        -12863.98
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.443690    0.000605    0.398780    0.492778    0.442410   1396.65   1448.83    1.000
r(A<->C){all}   0.062777    0.000084    0.044637    0.079665    0.062119   1069.28   1131.44    1.001
r(A<->G){all}   0.274149    0.000385    0.235782    0.311785    0.274003    662.20    785.17    1.000
r(A<->T){all}   0.162599    0.000336    0.126774    0.197658    0.162334   1023.68   1078.54    1.000
r(C<->G){all}   0.055190    0.000048    0.040801    0.068108    0.055137   1203.18   1213.70    1.000
r(C<->T){all}   0.379518    0.000459    0.339706    0.422076    0.379741    794.62    839.95    1.000
r(G<->T){all}   0.065768    0.000113    0.046641    0.087392    0.065161   1028.09   1093.38    1.000
pi(A){all}      0.232503    0.000030    0.222060    0.243815    0.232458   1041.26   1107.72    1.002
pi(C){all}      0.331995    0.000037    0.320124    0.343688    0.331959    768.91    792.64    1.000
pi(G){all}      0.258660    0.000031    0.247401    0.268992    0.258719    876.09   1028.45    1.000
pi(T){all}      0.176842    0.000022    0.167203    0.185603    0.176804   1022.48   1096.09    1.000
alpha{1,2}      0.057483    0.001013    0.000371    0.105579    0.059822    898.78   1004.30    1.000
alpha{3}        4.916040    1.288153    2.873569    7.147626    4.785973   1281.51   1391.25    1.000
pinvar{all}     0.382425    0.001166    0.318534    0.452325    0.380581   1273.42   1287.36    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-11697.793929
Model 2: PositiveSelection	-11697.567781
Model 0: one-ratio	-11796.367735
Model 3: discrete	-11697.455123
Model 7: beta	-11698.291776
Model 8: beta&w>1	-11697.473095


Model 0 vs 1	197.14761200000066

Model 2 vs 1	0.4522959999994782

Model 8 vs 7	1.6373620000013034
>C1
MSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVI
RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG
QNPYATLPRSNVGQQGGEAVEELQPEFEEEDCYEMDIEVALAASRQSQRG
SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA
RLDPQPVVGTSANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTT
TTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYASTQDSVQDYPSGRR
SAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFN
DEPEIKELPQLPAELETIPEASEAVEDREGLVIEQRCQILESERKFQPTP
EIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPR
PCGDDFEAEAAAAEAAKTQEVPEPLPPQVSAAPPATVSVEPSPAPLRESP
PRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLRE
DYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCT
APERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQS
VEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPRASIV
SALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQREL
SNQQQNLLSQQQLQQSKLLQLQQCVQSQELQQQVQHLTQKSQQQPPQANQ
QQQQQQQQRGTQQQQHSQVTQRTQQQQQQVPQQVTQQQQQEHSLLSQTTL
AETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPT
SIPVRPSAIAVQSSYCSSQFDVHELIEETAEELEHSEVLFPPPSPLSHLT
KQGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVD
APKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDR
SGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVF
EECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKS
NILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITE
QRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFER
TQSAKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYG
KTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFD
SKFPLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGY
QATTSSVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAIT
TTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGSASAPAPVPSAAPT
KATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGA
GGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALG
RIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAG
KIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELF
TTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGR
PFCKNHARooooooooooooooo
>C2
MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI
RSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG
QNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQRG
SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA
RLDPQPEVGTSANGAPQWQSYSAPQLTTASAHQLAEQESSSDSYTSTSTT
TTTTSEEYAAKVQAYQMQEQSGSEFDYQVDYGSTQDSIQDYPSGRRSAQE
CVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFNDEPE
IKELPQLPVELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEIKI
EIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGD
DFEAEAAAAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPLKESPPRGS
RLSQAMVTAPEFELKFAPPADQGIPLPEETKPYMPPPIDTKPYLREDYRP
KSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLNMCDALCTAPER
GYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVEYY
ETRRDQPRKSSAFAAMQAFQPSREPLSSNTASNAGSVADTPRASIVSALK
EETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQ
QSLLSQQQLQQSKLLQLQQCVQSQELKQQMQHLTQKSQQQPPQANQQQQQ
QQQQRGTQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEHSLLSQTTLAETQ
TLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPTSIPV
RPSAIAVQSSYCSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQGKA
VQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAP
VTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDRSGPVT
MAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSA
THARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKSNILSV
SGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITEQRVGN
LNIQQREQSSQLQQQALSQTQSQTRSQVGNTQIERRRKVTEEFERTQSAK
TIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYGKTGFV
ASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPL
KPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGYQATTS
SVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAITTTTNN
QATTAYRSSNGSITKPNLASRPSIASITAPGSANAPAPSAASTKATAPFK
APIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGKSAGA
FGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDH
FICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCL
NAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTKCFAC
GFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHA
Roooooooooooooooooooooo
>C3
MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI
RSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPAPGG
QNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQRG
SSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGATA
RLDPQPEVGTSATGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTT
TTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQDSIQDYPSGRRSAQECVD
SLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVFNDEPEIKE
LPQLPVELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEIKIEIA
PVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGDDFE
AEAADAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPLKESPPRGSRLS
QAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLREDYRPKSP
FVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYT
PLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVEYYETR
RDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPRASIVSALKEET
DLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQSL
LSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKSQQQPPQANQQQQQQQQ
QRGTQQQQHSQVTQRTQQQQVSQQVTQQQQQEHSLLSQTTLAETQTLQAN
AQSQSSASYSSKATACSNSSSTVPPANTSTAFAPAPAPAPAPAPAPTSTP
VRPSAIAVQSSYCSSQFDAHELIEETAEELEHSEVLFPPPSPLSHLTKQG
KAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPK
APVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQLSVPIIVEDRSGP
VTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEEC
SATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPETKSNIL
SVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSYNQQPERITEQRV
GNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERRRKVTEEFERTQS
AKTIEIRTGSQSVSQSKAQSQSISQAQTQAQSQSQNQSDTERRSSYGKTG
FVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKF
PLKPAPAESIVPGYATVPAATKMLTAPPPGFLQQQQQQQQRSAFSGYQAT
TSSVQQSSFASSSKATTSSLSSSSASASASASVARSSQSLTQASAITTTT
NNQATTAYRSSNGSITKPNLASRPSIASITAPGSANAPAPVPSAAPTKAT
APFKAPIVPKSVIANAVNAAAPPAPAVFPPDLSDLNLNSNVDNSPGAGGK
SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
KNHARoooooooooooooooooo
>C4
MSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVI
RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQSPRPGGQN
PYATLPRSNVGQQGGEAVEELQPEFEEEDCFEMDIEVALAASRQSQRGSS
FTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQEVPPLPPGGATARL
DPQPQVGASANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTSTTTT
TTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYGSTQDSMQDYPSGRRSA
QECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPSTRRVVFNDE
PEIKELPQLPDELETIPEASEAVEDREGLVIEQRCQILESERKFQPTPEI
KIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPC
GDDFEAEAAAAEAAKAREVPAPPPPQVSSAQPAIDPVEPSPAPLRESPPR
GSRLTQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKPYLREDY
RPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAP
ERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPEPPQSVE
FYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVPDTPRDSIVSA
LKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSN
QQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKAQQQPPQANQQQ
QLQLQQQQQRGSQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEQEHSLLSQ
TTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPATTSTAFAPAPAP
APSLAPVPTSTPVRPSAFAVQSSYCNSQFDAHELIEETVEELEHSPVLFP
PPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELR
ENVPLAFVDAPKAPVTSDSSTVHRPIAQVAAPTTVVAPSREREKERRPQL
SVPIIVEDRSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPF
YQTEEKLVFEECSATHARNYNELNASPFPDRTRSPAPGPPPNPLNAIRAP
RMREPETKSNILSVSGGPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSF
SQQPERITEQRVGNLNIQQREQSSQLQQQAQSQTQSQTRSQVGNTQIERR
RKVTEEFERTQSAKTIEIRTGSQSVSQSRAQSQSISQAQSQAQYQSQNQS
DTERRSSYGKTGFVASQAKRLSCMEEEISSLTSQSQAISARASALGEGCF
PNLRSPTFDSKFPLKPAPAESIVPGYTTVPAATKMLTAPPPGFLQQQQQQ
QQRSAFSGYQATTSSVQQSSFASSSKATTSSLSSSSASASASASASASVA
RSSQSLTQASAITTTTNNQATTAYRSSNGSITKPNLASRPSIASITAPGS
ANAPAPAPAPSAAPIKATAPFKAPIVPKSVIANAVNAAAPPAPAVFPPDL
SDLNLNSNVDNSPGAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCN
SCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEY
CFEKYLAPTCSKCAGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFL
EDGNAYCEADWNELFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFC
KQNLEGQSFYNKGGRPFCKNHAR
>C5
MSAYVADEPSSIYGQINTSSGVSGPPPPSQSGDQPFEYVTLTGNVIRSVQ
PPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQSPRPAPGGNNPY
ATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQRGSSFT
WPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGATARLDP
QPQVETSAPGVPQWQSYSAPQLSNRQLAEQESSSDSYTSTSTTTTTTSEE
YQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIQESASGRRSAQECVD
SLSVPLSTYKLVDMVREVTPSPVTTPTQTPAPAPSTRRVVFNDEPEIKEL
PQLSGELETIPEASEAVEDREDREGLVIEQRCQILESERKFQPTPEIKIE
IAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGDD
FEAEAAAAEAARAQEAPALPPPPPPPPAPVEPSPAPLRESPPRGTRLSQA
MVTAPEFELKFAPPADQGIPLPEETEPYMPPPIEIKPYLREDYRPKSPFV
SALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYTPL
NPENAMHRVDEEQKQQELKKHEFQVLDHEEELGIRPEPPQSVEYYETRKD
QPRKSSAFAAMQAFQPSREPLSSNSVSNAGSVVDTPRASIVSALKEETDL
EYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQSLLS
QQQLQQSKLLQLQQCVQSQELQQQVQQLSQKSQRQEQHVLTQQQQPPQQQ
QQHSQITPRTQQQQVSQQQQQPVTQQQHRHSLLSQTETQTPQANAQSQSS
ASYSSKATACSNSSSTVPPATSTACAPAPVQAPAPAPAPAPAPTLAPVST
PVRPPPIAVQSSYCSTQFDAHELIEETAEELEHSDVLFPPPSPLSHLTKQ
GKAVQSGLHKADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAP
KAPVTSDSSTVHKPIAIAQAAPPTTVVAPSRERETVKPRPQLSVPIIVED
RSGPVTMAFQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLV
FEECAASHARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPK
STILSVSGAPRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERIT
EQRVGNLSIQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFE
RTQSAKTIEIRTGSQSVTQSRGQSQAISQNHAQSQNQSDTERRSSYGKTG
FVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKF
PLKPASVESTVPGYGAAPAATDKLTAPPPGFLQQQQQRSAFSGYQATTSA
VQQSSYASSSKATSSSLSSSSASASTSASVARSSQSLTQASAITTTTNNQ
ATKAFRSSNGSTINANTASRPSIASITAPGSAPAPAAVKATAPLKAPIAP
KSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGKSAGAF
GATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIWCPDHF
ICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIKGDCLN
AIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACG
FPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFCKNHAR
ooooooooooooooooooooooo
>C6
MSAYVADEPSSIYGQISTNSGASAPPPPSQSGDQPFEYVTLTGNVIRSVQ
APGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPGGNNP
YATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQRGSSF
TWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGATARLD
PQPQGEATAQGAPQWQSYSAPQLTNRQLAEQESSSDSYTSTSTTTTTTSE
EYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIHEYASGRRSAQECV
DSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAPSTRRVVFNDEPEIKE
LPQLSGELETIPEASEGVEDREDREGLVIEQRCQILESERKFQPTPEIKI
EIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVECPFPRPCGD
DFEAEAAAAEAARAQEVPAPPPPPPPPPAPVEPSPAPLRESPPRGTRLSQ
AMVTAPEFELKFAPPADQGIPLPEETVPYMPPPIEIKPYLREDYRPKSPF
VSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCDALCTAPERGYTP
LNPENAMHRVDEEQKQQELKKNEFQVLDHEEELGIRPEPPQSVEFYETRR
DQPRKSSAFAAMQAFQPSREPLSSNSASNAGSVVATPRDSIVSALREETD
LEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQLQRELSNQQQNLL
NQQQLQQSKLLQLQQCAQSQELQQQVQQLSQKSQQQEQHLLTQQQQPPQQ
QQQQHSQVTQRTQQQQVSHQQQQQVTQQQHRHSLLSQTETQTLQANAQSQ
SSASYSSKATACSNSSSTVPPATSTAFAPAPAPAPAPVSTPVRPPALAVQ
SSYCSTQYDAHELFEETAEELEHSPILFPPPSPLSHLTKQGKAVQSGLHK
ADSIPKYQRNWTVLPTQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSST
VHRPIAIAQVAPPTTVVAPSRERERETPKPRPQLSVPIIVEDRSGPVTMA
FQPLDELVRPDQALTPTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASH
ARNYNELCASPFPDRTRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSG
APRLQTGSITTGQSYQGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLS
IQQREQSSQLQQQAQSQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTI
EIRTGSQSVTQSRGQSQAISQSQAQSQAQSQVQSQVQSQNQSDTERRSSY
GKTGFVANQAKRLSCLEQEISSLTSQSQAISARASALGEGCFPNLRSPTF
DSKFPLKPASVESTVPGYGTAPAATDKLMAPPPGFLQQQQQQQQQRSAFS
GYQATTSAVQQSSYASSSKATSSSLSSSSASASASASVARSSQSLTQASA
ITTTTNNQATTAFRSSNGSTIKPNPASRPSIASITAPGSANATAPAPVKA
IAPLKAPIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGA
GAGGKSAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITA
LGRIWCPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKC
AGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNE
LFTTKCFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKG
GRPFCKNHARooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=1828 

C1              MSAYVADEPSSIYGQISAESVALAPPPPQPPTAGGGDQPFEYVTLTGNVI
C2              MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI
C3              MSAYVADEPSSIYGQISADSVAFAPPPPQPPTAGGGDQPFEYVTLTGNVI
C4              MSAYVADEPSSIYGQISADSVAIAPPAPQPPTAGGGDQPFEYVTLTGNVI
C5              MSAYVADEPSSIYGQINTSSGVSGPPPP----SQSGDQPFEYVTLTGNVI
C6              MSAYVADEPSSIYGQISTNSGASAPPPP----SQSGDQPFEYVTLTGNVI
                ****************.:.* . .**.*    : .***************

C1              RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG
C2              RSVHPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG
C3              RSVQPPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPRPAPG
C4              RSVQAPGKGACPSYKVNQGYARPFGAAAPKSPVSYPPQQQQQ-SPR--PG
C5              RSVQPPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQ-SPRPAPG
C6              RSVQAPGKGAGPSYKVNQGYARPFGAAAPKSPVSYPVQQQQQQSPRPAPG
                ***:.***** ************************* ***** ***  **

C1              GQNPYATLPRSNVGQQGGEAVEELQPEFEEEDCYEMDIEVALAASRQSQR
C2              GQNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQR
C3              GQNPYATLPRSNVGQQGGGAVEELQPEFEEEDCYEMDIEVALAASRQSQR
C4              GQNPYATLPRSNVGQQGGEAVEELQPEFEEEDCFEMDIEVALAASRQSQR
C5              GNNPYATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQR
C6              GNNPYATLPRSNVGQQGGEVVEELQPEFEEEDCFEMDIEVALAASRQSQR
                *:**************** .*************:****************

C1              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT
C2              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT
C3              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQQVPPLPPGGAT
C4              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVSNPVQEVPPLPPGGAT
C5              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGAT
C6              GSSFTWPPPQDDSHLAPTAAPLYIPPPETQHVVVTNPVQQVPPLPPGGAT
                **********************************:****:**********

C1              ARLDPQPVVGTSANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST
C2              ARLDPQPEVGTSANGAPQWQSYSAPQLTTASAHQLAEQESSSDSYTSTST
C3              ARLDPQPEVGTSATGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST
C4              ARLDPQPQVGASANGAPQWQSYSAPQLTTASARQLAEQESSSDSYTSTST
C5              ARLDPQPQVETSAPGVPQWQSYSAPQLS---NRQLAEQESSSDSYTSTST
C6              ARLDPQPQGEATAQGAPQWQSYSAPQLT---NRQLAEQESSSDSYTSTST
                *******   ::* *.***********:    :*****************

C1              TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYASTQDSVQDYPSGR
C2              TTTTTSEEY----AAKVQAYQMQEQSGSEFDYQVDYGSTQDSIQDYPSGR
C3              TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDY-------QDSIQDYPSGR
C4              TTTTTSEEYQRMYAAQVQAYQMQEQSGSEFDYQVDYGSTQDSMQDYPSGR
C5              TTTTTSEEYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIQESASGR
C6              TTTTTSEEYQRMYAAQIQAYQMQEQSGSEFDYQVDYGSTQDSIHEYASGR
                *********    **::***************       ***::: .***

C1              RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF
C2              RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF
C3              RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPTTRRVVF
C4              RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAPAAPSTRRVVF
C5              RSAQECVDSLSVPLSTYKLVDMVREVTPSPVTTPTQTPAP-APSTRRVVF
C6              RSAQECVDSLAVPLSTYKLVDMVREVTPSPVTTPTQTPAP-APSTRRVVF
                **********:***************************** **:******

C1              NDEPEIKELPQLPAELETIPEASEAVEDRE---GLVIEQRCQILESERKF
C2              NDEPEIKELPQLPVELETIPEASEAVEDRE---GLVIEQRCQILESERKF
C3              NDEPEIKELPQLPVELETIPEASEAVEDRE---GLVIEQRCQILESERKF
C4              NDEPEIKELPQLPDELETIPEASEAVEDRE---GLVIEQRCQILESERKF
C5              NDEPEIKELPQLSGELETIPEASEAVEDREDREGLVIEQRCQILESERKF
C6              NDEPEIKELPQLSGELETIPEASEGVEDREDREGLVIEQRCQILESERKF
                ************. **********.*****   *****************

C1              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
C2              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
C3              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
C4              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
C5              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
C6              QPTPEIKIEIAPVRQIPPTKIPNPMPKEWINPMIRVLTTAPEVPFHLVEC
                **************************************************

C1              PFPRPCGDDFEAEAAAAEAAKTQEVPEPLPPQVSAAPPATVSVEPSPAPL
C2              PFPRPCGDDFEAEAAAAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPL
C3              PFPRPCGDDFEAEAADAEAAKAQEVPEPLPPQVSAAPPATVPVEPSPAPL
C4              PFPRPCGDDFEAEAAAAEAAKAREVPAPPPPQVSSAQPAIDPVEPSPAPL
C5              PFPRPCGDDFEAEAAAAEAARAQEAPALPPP----PPPPPAPVEPSPAPL
C6              PFPRPCGDDFEAEAAAAEAARAQEVPAPPPP----PPPPPAPVEPSPAPL
                *************** ****:::*.*   **    . *.  .********

C1              RESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP
C2              KESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETKPYMPPPIDTKP
C3              KESPPRGSRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP
C4              RESPPRGSRLTQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIDTKP
C5              RESPPRGTRLSQAMVTAPEFELKFAPPADQGIPLPEETEPYMPPPIEIKP
C6              RESPPRGTRLSQAMVTAPEFELKFAPPADQGIPLPEETVPYMPPPIEIKP
                :******:**:*************************** *******: **

C1              YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD
C2              YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLNMCD
C3              YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD
C4              YLREDYRPKSPFVSALTTAPDRPFEGHFDKDVPIHMIDLPTPKEHLSMCD
C5              YLREDYRPKSPFVSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCD
C6              YLREDYRPKSPFVSALTTAPERPFEGHFDKDVPIHMIDLPTPKEHLSMCD
                ********************:*************************.***

C1              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE
C2              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE
C3              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE
C4              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKREFQVLDHEEELGIRPE
C5              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKHEFQVLDHEEELGIRPE
C6              ALCTAPERGYTPLNPENAMHRVDEEQKQQELKKNEFQVLDHEEELGIRPE
                *********************************.****************

C1              PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPR
C2              PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTASNAGSVADTPR
C3              PPQSVEYYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVADTPR
C4              PPQSVEFYETRRDQPRKSSAFAAMQAFQPSREPLSSNTVSNAGSVPDTPR
C5              PPQSVEYYETRKDQPRKSSAFAAMQAFQPSREPLSSNSVSNAGSVVDTPR
C6              PPQSVEFYETRRDQPRKSSAFAAMQAFQPSREPLSSNSASNAGSVVATPR
                ******:****:*************************:.******  ***

C1              ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
C2              ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
C3              ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
C4              DSIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
C5              ASIVSALKEETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
C6              DSIVSALREETDLEYQKYLKAQQRNQKRLDYFHQKEEELSGLQGQQLTQL
                 ******:******************************************

C1              QRELSNQQQNLLSQQQLQQSKLLQLQQCVQSQELQQQVQHLTQKSQQQPP
C2              QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELKQQMQHLTQKSQQQPP
C3              QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKSQQQPP
C4              QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQMQHLTQKAQQQPP
C5              QRELSNQQQSLLSQQQLQQSKLLQLQQCVQSQELQQQVQQLSQKSQRQEQ
C6              QRELSNQQQNLLNQQQLQQSKLLQLQQCAQSQELQQQVQQLSQKSQQQEQ
                *********.**.***************.*****:**:*:*:**:*:*  

C1              QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQQQVPQQVTQQQQQE--
C2              QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQQQVSQQVTQQQQQE--
C3              QANQQQQ---QQQQQRGTQQQQHSQVTQRTQQQQ--VSQQVTQQQQQE--
C4              QANQQQQLQLQQQQQRGSQQQQHSQVTQRTQQQQQQVSQQVTQQQQQEQE
C5              HVLTQQQ---QPPQQ---QQQ-HSQITPRTQQQQVSQQQQQPVTQQQHR-
C6              HLLTQQQ---QPPQQ---QQQQHSQVTQRTQQQQVSHQQQQQVTQQQHR-
                :   ***   *  **   *** ***:* ******    **    ***.  

C1              HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF
C2              HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF
C3              HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPANTSTAF
C4              HSLLSQTTLAETQTLQANAQSQSSASYSSKATACSNSSSTVPPATTSTAF
C5              HSLLSQT---ETQTPQANAQSQSSASYSSKATACSNSSSTVPPA-TSTAC
C6              HSLLSQT---ETQTLQANAQSQSSASYSSKATACSNSSSTVPPA-TSTAF
                *******   **** ***************************** **** 

C1              APAPAPAP--------------TSIPVRPSAIAVQSSYCSSQFDVHELIE
C2              APAPAPAP--------------TSIPVRPSAIAVQSSYCS-QFDAHELIE
C3              APAPAPAPAPAPAP--------TSTPVRPSAIAVQSSYCSSQFDAHELIE
C4              APAPAPAPSLAPVP--------TSTPVRPSAFAVQSSYCNSQFDAHELIE
C5              APAPVQAPAPAPAPAPAPTLAPVSTPVRPPPIAVQSSYCSTQFDAHELIE
C6              APAPAPAPAP------------VSTPVRPPALAVQSSYCSTQYDAHELFE
                ****. **              .* ****..:*******. *:*.***:*

C1              ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
C2              ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
C3              ETAEELEHSEVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
C4              ETVEELEHSPVLFPPPSPLSHLTKHGKAVQSGLHKADSIPKYQRNWTVLP
C5              ETAEELEHSDVLFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
C6              ETAEELEHSPILFPPPSPLSHLTKQGKAVQSGLHKADSIPKYQRNWTVLP
                **.****** :*************:*************************

C1              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT
C2              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT
C3              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT
C4              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRP--IAQVAAPTT
C5              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHKPIAIAQAAPPTT
C6              TQSPIRTPEPQELRENVPLAFVDAPKAPVTSDSSTVHRPIAIAQVAPPTT
                *************************************:*  ***.*.***

C1              VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
C2              VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
C3              VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
C4              VVAPSRERE---KERRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
C5              VVAPSRERE--TVKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
C6              VVAPSRERERETPKPRPQLSVPIIVEDRSGPVTMAFQPLDELVRPDQALT
                *********    : ***********************************

C1              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR
C2              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR
C3              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR
C4              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECSATHARNYNELNASPFPDR
C5              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDR
C6              PTRPYTPSLTNKPAPIVPFYQTEEKLVFEECAASHARNYNELCASPFPDR
                *******************************:*:******** *******

C1              TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY
C2              TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY
C3              TRSPAPGPPPNPLNAIRAPRMKEPETKSNILSVSGGPRLQTGSITTGQSY
C4              TRSPAPGPPPNPLNAIRAPRMREPETKSNILSVSGGPRLQTGSITTGQSY
C5              TRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSY
C6              TRSPAPGPPPNPLNAIRAPRMKEPEPKSTILSVSGAPRLQTGSITTGQSY
                *********************:***.**.******.**************

C1              QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQ
C2              QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAL
C3              QGQLLAHSEQSSQSASQSYNQQPERITEQRVGNLNIQQREQSSQLQQQAQ
C4              QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLNIQQREQSSQLQQQAQ
C5              QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQ
C6              QGQLLAHSEQSSQSASQSFSQQPERITEQRVGNLSIQQREQSSQLQQQAQ
                ******************:.**************.************** 

C1              SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ
C2              SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ
C3              SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSKAQ
C4              SQTQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVSQSRAQ
C5              SQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQ
C6              SQSQSQTRSQVGNTQIERRRKVTEEFERTQSAKTIEIRTGSQSVTQSRGQ
                **:*****************************************:**:.*

C1              SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC
C2              SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC
C3              SQSISQAQTQAQSQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC
C4              SQSISQAQSQAQYQ--------SQNQSDTERRSSYGKTGFVASQAKRLSC
C5              SQAISQNHAQ------------SQNQSDTERRSSYGKTGFVANQAKRLSC
C6              SQAISQSQAQSQAQSQVQSQVQSQNQSDTERRSSYGKTGFVANQAKRLSC
                **:*** ::*            ********************.*******

C1              MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV
C2              MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV
C3              MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV
C4              MEEEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPAPAESIV
C5              LEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTV
C6              LEQEISSLTSQSQAISARASALGEGCFPNLRSPTFDSKFPLKPASVESTV
                :*:*****************************************..** *

C1              PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA
C2              PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA
C3              PGYATVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA
C4              PGYTTVPAATKMLTAPPPGFLQQQQQQQQ-RSAFSGYQATTSSVQQSSFA
C5              PGYGAAPAATDKLTAPPPGFLQQQQQ----RSAFSGYQATTSAVQQSSYA
C6              PGYGTAPAATDKLMAPPPGFLQQQQQQQQQRSAFSGYQATTSAVQQSSYA
                *** :.****. * ************    ************:*****:*

C1              SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT
C2              SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT
C3              SSSKATTSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT
C4              SSSKATTSSLSSSSASASASASASASVARSSQSLTQASAITTTTNNQATT
C5              SSSKATSSSLSSS----SASASTSASVARSSQSLTQASAITTTTNNQATK
C6              SSSKATSSSLSSS----SASASASASVARSSQSLTQASAITTTTNNQATT
                ******:******    *****:**************************.

C1              AYRSSNGSITKPNLASRPSIASITAPGSASAPAPV--PSAAPTKATAPFK
C2              AYRSSNGSITKPNLASRPSIASITAPGSANAPA----PSAASTKATAPFK
C3              AYRSSNGSITKPNLASRPSIASITAPGSANAPAPV--PSAAPTKATAPFK
C4              AYRSSNGSITKPNLASRPSIASITAPGSANAPAPAPAPSAAPIKATAPFK
C5              AFRSSNGSTINANTASRPSIASITAPG--SAPAP------AAVKATAPLK
C6              AFRSSNGSTIKPNPASRPSIASITAPGSANATAP------APVKAIAPLK
                *:******  :.* *************  .*.*       *. ** **:*

C1              APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK
C2              APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK
C3              APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK
C4              APIVPKSVIANAVNAAAP--PAPAVFPPDLSDLNLNSNVDNSP--GAGGK
C5              APIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSAGPGAGGK
C6              APIAPKSVIANAFNAAAPPAPAPAVFPPDLGDLNLNSNVDDSVGAGAGGK
                ***.********.*****  **********.*********:*   *****

C1              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
C2              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
C3              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
C4              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
C5              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
C6              SAGAFGATSAPKRGRGILNKAAGPGVRIPLCNSCNVQIRGPFITALGRIW
                **************************************************

C1              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
C2              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
C3              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
C4              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
C5              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
C6              CPDHFICVNGNCRRPLQDIGFVEEKGDLYCEYCFEKYLAPTCSKCAGKIK
                **************************************************

C1              GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
C2              GDCLNAIGKHFHPECFTCGQCGKVFGNRPFFLEDGNAYCEADWNELFTTK
C3              GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
C4              GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
C5              GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
C6              GDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTK
                ***********************:**************************

C1              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
C2              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
C3              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
C4              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
C5              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
C6              CFACGFPVEAGDRWVEALNHNYHSQCFNCTFCKQNLEGQSFYNKGGRPFC
                **************************************************

C1              KNHARooooooooooooooo--------
C2              KNHARoooooooooooooooooooooo-
C3              KNHARoooooooooooooooooo-----
C4              KNHAR-----------------------
C5              KNHARooooooooooooooooooooooo
C6              KNHARooooooooooooo----------
                *****                       




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1773 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1773 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/442/Zasp52-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [62486]

Library Relaxation: Multi_proc [72]
 lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FI