--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Dec 09 08:32:52 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/428/tzn-PA/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -3401.32 -3415.89 2 -3401.45 -3420.92 -------------------------------------- TOTAL -3401.38 -3420.23 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/428/tzn-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 1.268832 0.011808 1.066394 1.482763 1.265391 1275.70 1282.61 1.000 r(A<->C){all} 0.135913 0.000448 0.094444 0.177089 0.134843 1029.78 1067.92 1.000 r(A<->G){all} 0.220292 0.000912 0.167460 0.285986 0.218693 915.43 970.03 1.001 r(A<->T){all} 0.061032 0.000459 0.021005 0.102065 0.059411 712.72 830.07 1.000 r(C<->G){all} 0.050878 0.000125 0.029617 0.073294 0.049966 1039.94 1102.38 1.000 r(C<->T){all} 0.436668 0.001431 0.363517 0.511071 0.436960 968.77 973.37 1.000 r(G<->T){all} 0.095216 0.000349 0.061425 0.133610 0.094102 910.97 970.61 1.000 pi(A){all} 0.232457 0.000179 0.206951 0.259012 0.232541 1099.70 1172.31 1.000 pi(C){all} 0.294724 0.000191 0.268184 0.320610 0.294543 963.36 1063.06 1.000 pi(G){all} 0.298325 0.000209 0.269626 0.325010 0.298211 1095.61 1143.73 1.000 pi(T){all} 0.174495 0.000126 0.151419 0.195296 0.174150 1163.40 1216.03 1.000 alpha{1,2} 0.143382 0.000226 0.113644 0.171717 0.142103 1471.40 1486.20 1.000 alpha{3} 3.410075 0.788143 1.988941 5.271642 3.286206 1501.00 1501.00 1.000 pinvar{all} 0.316021 0.001917 0.231103 0.400577 0.317223 1302.41 1366.68 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -3152.906084 Model 2: PositiveSelection -3152.906084 Model 0: one-ratio -3196.137993 Model 3: discrete -3149.002038 Model 7: beta -3154.444122 Model 8: beta&w>1 -3150.097009 Model 0 vs 1 86.46381799999926 Model 2 vs 1 0.0 Model 8 vs 7 8.694225999999617 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_tzn-PA) Pr(w>1) post mean +- SE for w 12 S 0.723 1.254 +- 0.500 66 T 0.542 1.046 +- 0.546 170 Q 0.741 1.291 +- 0.456 172 S 0.648 1.180 +- 0.487 212 A 0.731 1.280 +- 0.437
>C1 MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK DTFKAo >C2 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH HHWDHAGGNEKLLKLWQKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK CLSTPCHTTGHICYHVTAQDGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEAAVQKHAGGATDPVVTMGKLRKEK DTFKAo >C3 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH HHWDHAGGNEKLLKLWQKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK CLSTPCHTTGHICYHVTAQDGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK DTFKAo >C4 MIASAWRSMATTVETQLTATYFRVQKLRKVGFRGMHSTVEDVKLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTLQEQQLTLSKVLTTH HHWDHAGGNEKLVKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGALNVK CLSTPCHTTGHICYHVTAQEGSGKGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSSLPDTTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEASVQKHAGGATDPIVTMGKLRKEK DTFKAo >C5 MFASAWRSVATSVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNHKVKQDDTLTIGSLKVK CLSTPCHTTGHICYHVTAQDGGGGEGAVFTGDTLFQGGCGRFFEGTPEEM YEALCTKLSALPDGTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKE KDNFKA >C6 MFASAWRSVANTVENQLTATYFRVQKLRKVGFRGMHSTLEDVKLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEKLTLNKVLTTH HHWDHAGGNEKLVKLWDKQLDVYGGDDRIGALNQKVQQDDTFTIGSLNVK CLSTPCHTTGHICYHVTSQEGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSALPDTTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RAAQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIITMGKLRKEK DTFKAo >C7 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVKLEGMEIK ILPALQDNYMYLIVDGKTREAAVVDPVEPELVIKTVQEEKLTLKKVLTTH HHWDHAGGNEKLVKLWEQQLDVYGGDDRIGALNKKVQQDDTFTIGSLNVK CLSTPCHTTGHICYHVTAQDGNGEGAVFTGDTLFQGGCGRFFEGTPDEMY EALCTKLSALPDSTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKEK DNFKAo >C8 MFASAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTTEAVKLEGMEIK ILPALQDNYMYLIVDAKTREAAVVDPVDPELVIKTVQDEQLTLSKVLTTH HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDSFTIGSLNVK CLSTPCHTTGHICYHVTAGGGNGEGAVFTGDTLFQGGCGRFFEGTPEEMY EALCTKLSALPDNTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKEK DNFKAo >C9 MFSAAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDSFTIGSLNVK CLSTPCHTTGHICYHVTAGDGSGEGAVFTGDTLFQGGCGRFFEGTAEEMY EALCTKLSALPDDTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKEK DTFKAo >C10 MFASAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDTFTIGSLNVK CLSTPCHTTGHICYHVTAQEGGEGAVFTGDTLFQGGCGRFFEGTPEEMYE ALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHRR ASQDPTVPSTIGEEKSWNPFMRVHEETVQKHAGGDTDPIVTMGKLRKEKD TFKAoo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=308 C1 MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK C2 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK C3 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK C4 MIASAWRSMATTVETQLTATYFRVQKLRKVGFRGMHSTVEDVKLEGMEIK C5 MFASAWRSVATSVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK C6 MFASAWRSVANTVENQLTATYFRVQKLRKVGFRGMHSTLEDVKLEGMEIK C7 MFASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVKLEGMEIK C8 MFASAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTTEAVKLEGMEIK C9 MFSAAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK C10 MFASAWRSVATTVETQLTATYFRVQKLRKVGLRGMHSTLEDVKLEGMEIK *:::****:*.:**.****************:****** * *:******* C1 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH C2 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH C3 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH C4 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTLQEQQLTLSKVLTTH C5 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH C6 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEKLTLNKVLTTH C7 ILPALQDNYMYLIVDGKTREAAVVDPVEPELVIKTVQEEKLTLKKVLTTH C8 ILPALQDNYMYLIVDAKTREAAVVDPVDPELVIKTVQDEQLTLSKVLTTH C9 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH C10 ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEEQLTLNKVLTTH *************** ***********:*******:*:::***.****** C1 HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK C2 HHWDHAGGNEKLLKLWQKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK C3 HHWDHAGGNEKLLKLWQKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK C4 HHWDHAGGNEKLVKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGALNVK C5 HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNHKVKQDDTLTIGSLKVK C6 HHWDHAGGNEKLVKLWDKQLDVYGGDDRIGALNQKVQQDDTFTIGSLNVK C7 HHWDHAGGNEKLVKLWEQQLDVYGGDDRIGALNKKVQQDDTFTIGSLNVK C8 HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDSFTIGSLNVK C9 HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDSFTIGSLNVK C10 HHWDHAGGNEKLVKLWEKQLDVYGGDDRIGALNQKVQQDDTFTIGSLNVK ************:***:::**************:**:***::***.*:** C1 CLSTPCHTTGHICYHITAQQGSG-EGAVFTGDTLFQGGCGRFFEGTPEEM C2 CLSTPCHTTGHICYHVTAQDGSG-EGAVFTGDTLFQGGCGRFFEGTPEEM C3 CLSTPCHTTGHICYHVTAQDGSG-EGAVFTGDTLFQGGCGRFFEGTPEEM C4 CLSTPCHTTGHICYHVTAQEGSG-KGAVFTGDTLFQGGCGRFFEGTPEEM C5 CLSTPCHTTGHICYHVTAQDGGGGEGAVFTGDTLFQGGCGRFFEGTPEEM C6 CLSTPCHTTGHICYHVTSQEGSG-EGAVFTGDTLFQGGCGRFFEGTPEEM C7 CLSTPCHTTGHICYHVTAQDGNG-EGAVFTGDTLFQGGCGRFFEGTPDEM C8 CLSTPCHTTGHICYHVTAGGGNG-EGAVFTGDTLFQGGCGRFFEGTPEEM C9 CLSTPCHTTGHICYHVTAGDGSG-EGAVFTGDTLFQGGCGRFFEGTAEEM C10 CLSTPCHTTGHICYHVTAQEGGE--GAVFTGDTLFQGGCGRFFEGTPEEM ***************:*: *. *********************.:** C1 YEALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C2 YEALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C3 YEALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C4 YEALCTKLSSLPDTTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C5 YEALCTKLSALPDGTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C6 YEALCTKLSALPDTTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C7 YEALCTKLSALPDSTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C8 YEALCTKLSALPDNTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C9 YEALCTKLSALPDDTKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH C10 YEALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKH *********:*** ************************************ C1 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKE C2 RRASQDPTVPSTIGEEKSWNPFMRVHEAAVQKHAGGATDPVVTMGKLRKE C3 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKE C4 RRASQDPTVPSTIGEEKSWNPFMRVHEASVQKHAGGATDPIVTMGKLRKE C5 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKE C6 RRAAQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIITMGKLRKE C7 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKE C8 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKE C9 RRASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPIVTMGKLRKE C10 RRASQDPTVPSTIGEEKSWNPFMRVHEETVQKHAGGDTDPIVTMGKLRKE ***:*********************** :******* ***::******** C1 KDTFKAo- C2 KDTFKAo- C3 KDTFKAo- C4 KDTFKAo- C5 KDNFKA-- C6 KDTFKAo- C7 KDNFKAo- C8 KDNFKAo- C9 KDTFKAo- C10 KDTFKAoo **.*** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 306 type PROTEIN Struct Unchecked Input File /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 306 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/428/tzn-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/428/tzn-PA/bat