--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Wed Dec 07 01:36:35 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/392/siz-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -10695.93 -10710.60 2 -10695.58 -10708.39 -------------------------------------- TOTAL -10695.74 -10710.01 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.718019 0.001440 0.651617 0.797436 0.716692 1188.05 1292.90 1.000 r(A<->C){all} 0.074742 0.000101 0.055617 0.094168 0.074204 1100.04 1215.67 1.000 r(A<->G){all} 0.302438 0.000509 0.261505 0.350206 0.301942 613.26 878.29 1.000 r(A<->T){all} 0.109547 0.000300 0.076929 0.143360 0.108996 939.38 964.79 1.000 r(C<->G){all} 0.049740 0.000045 0.036174 0.061904 0.049633 1175.15 1253.50 1.000 r(C<->T){all} 0.399133 0.000547 0.354723 0.444944 0.398795 907.13 1011.11 1.000 r(G<->T){all} 0.064399 0.000108 0.043666 0.083811 0.063925 941.53 1032.22 1.000 pi(A){all} 0.218305 0.000034 0.206442 0.229373 0.218353 990.07 1027.12 1.000 pi(C){all} 0.318365 0.000045 0.306157 0.331888 0.318265 1031.14 1070.66 1.002 pi(G){all} 0.292141 0.000045 0.279795 0.305875 0.292279 1110.61 1129.09 1.002 pi(T){all} 0.171189 0.000028 0.160614 0.181353 0.171066 978.73 1103.39 1.000 alpha{1,2} 0.046392 0.000571 0.000138 0.079675 0.050246 1128.56 1213.13 1.000 alpha{3} 6.504473 1.644087 4.208578 9.104711 6.372253 1497.42 1499.21 1.000 pinvar{all} 0.404776 0.000530 0.362987 0.451592 0.404819 1029.47 1265.24 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -9536.574274 Model 2: PositiveSelection -9536.574274 Model 0: one-ratio -9619.04611 Model 3: discrete -9533.759829 Model 7: beta -9543.835759 Model 8: beta&w>1 -9533.811376 Model 0 vs 1 164.9436719999976 Model 2 vs 1 0.0 Model 8 vs 7 20.048765999999887 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_siz-PB) Pr(w>1) post mean +- SE for w 41 G 0.891 2.051 46 P 1.000** 2.272 47 G 0.933 2.135 57 N 0.911 2.091 60 V 0.944 2.158 62 A 0.891 2.051 226 G 0.641 1.537 502 L 0.947 2.166 699 M 0.922 2.113 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_siz-PB) Pr(w>1) post mean +- SE for w 41 G 0.861 1.449 +- 0.470 46 P 0.983* 1.576 +- 0.330 47 G 0.889 1.480 +- 0.445 48 P 0.617 1.132 +- 0.644 57 N 0.862 1.454 +- 0.453 60 V 0.887 1.481 +- 0.437 61 H 0.576 1.078 +- 0.641 62 A 0.848 1.438 +- 0.463 226 G 0.734 1.284 +- 0.582 502 L 0.902 1.495 +- 0.425 699 M 0.884 1.474 +- 0.446 1121 Q 0.570 1.068 +- 0.650
>C1 MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSIMFVGNQGGPGGSAGGV APPGPVSLPLPLSINMPHHHVHAMPYNVDELLRENNALHAKIKELSLERD RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY MMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQ LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALPQ GAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMR PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVYA AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQQGSQASGEQAPNS ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT SSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYTH ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQAQ PLTGRIPGRERKASRTDENGRSTEVoooooooooooooooo >C2 MSEADLKNISQNSDDDQELLLHQTTQSLLMASSMMFMENQGGPGASGGGV ALPGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKELSLERD RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY MMVKKFASITAMAKAEKRLSRRMVVTSSSLGLAEEGASSSSAYGSATESQ LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALHQ GAAYYTSYHGSPHDLNYASSADTSLNASWVNTSSHSPHTPYYSAAQIYMR PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVYA AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGEQAPNS ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT SSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYTH ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQPL TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo >C3 MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFMENQGGPGASGGGV ALPGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKELSLERD RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLQGHGH HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY MMVKKFASITAMAKAEKRLSRRMVVTSSSLGLAEEGASSSSAYGSATESQ LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALPQ GAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMR PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAAGAGVYA AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGEQAPNS ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT SSASRENAAAIAAAANAAAAAKMRFNMPPAAAIATPSNVYAAPGMQAYTH ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQPL TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo >C4 MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFVENPKGAGGSGGGV ALPGPVSMPLPLSIAMPHHHLHAIPYNVDELLRENNALHAKIKELSLERD RLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYELAGAQQP GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY MMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQ LTEQQQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQ LDCSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQAL PQGAAYYTSYHGSPHDISYASSADTSLNASWVNTSGHSPHTPYYSAAQIY MRPKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQT QLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLN SDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGV YAAQMQAAVAAATAAGGIPPADDHAISSHTSAAQYEQHEQQQHEQQQLQA AAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTP QGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDV ALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLA FAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDR VKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVN KKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLL DMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMES LRIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQAAGEQAP NSADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQST TTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAY THANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQPL TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo >C5 MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFVENPVGGPVGGGGG GVGAGVPVPGPVSLPLSIGLPHHQAIQIPYNVDELLRENNALHAKIKELS LERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYELAG AQQPGSANASSCTDGGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMV YQIQQYPTCHQQQQQQHLQQQQHQQHLHQTSAGHYMQVTATAGGGGGQYH HHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQHQAQQQQQ QNMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARN AAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGAS SSSAYGSATESQLTEQQQQQLAAQQQQQQQQQPRVTIMAGPAGAASPGLS RTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVSTSALASHPHVN LLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSADTSLNASWVNTS GHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPP EVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQS SGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAG AISAGMGVAGGAGVYAAQMQAAVAAATAAGGLPPADDHAISSHTSAAQYE QHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKG ITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSC FAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADI VGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDC HDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRR LVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTF RNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAE DLKESISEMDEMESLRIEAELERQKSARNRAPGNAENRDSGVADVEVCSC PYQPGSQSAGEQAPNSADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSV GSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIA TPSNVYAAPGMQAYTHANFVQQSQAAYIMQQQQMLQQQAQMQAQAQAQAQ AQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRSTEV >C6 MSEADLKNLNLSQNPDGDQELLLHQTTQSLLMASSMMFVENPGGGVPQPG QPVSLPLSIALPHHHAIPYNVDELLRENSALHAKIKELSVERDRLLCEVS NLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYELAGAQQPGSANASS TCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQQYPTCH QQQQQQHLQQQQQQQQQQQHLHQTGGGHYMQVTATGGQYHHHHMLHGHGH HAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIR NGGDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFR HYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATE SQLVEQQQQQQQQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQ LDCSPIPRSQSGASPASISSSTVTSSSALASHPHVNLLHAAEPHYYNAQA LPTAAAYYTSYHGSPHDISYASSADTSLNASWVNTSGHSPHTPYYSAAQI YMRPKGGSTTPTPSCSGSTGSGSGGSGSGSNKKVPPEVPKRTSSITAQQQ TQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNM NSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVAGGAGIY AAQMQAAVAAATAAGGHPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAA AAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQ GVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVA LRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAF AIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRV KSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNK KERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLD MPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESL RIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQAGSQASGEQAPN SADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTT TSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYT HANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQP LTGRIPGRERKASRTDENGRSTEVooooooooooooooooo >C7 MSEADVKNLSQNTDGDQELLLHQTTQSLLMASSMLFVENPGGGGAVPIPG PVSLPLSIGLPHHQIPYNVDDLLRENNALHAKIKELSLERDRLLCEVSNL RLELDMSELKRLPIDLDENFPQKSLERSGSTQYELAGAQQPGSANASSCT DSGSVGGYVYLQNHYAPGAHSNSAAINYPAQQHPQMVYQIQQYPTCHQQQ QQQQQQQQHLQQQQQQHMHQTSAGHYMQVTATGGQYHHHHMLHGHGHHVH HHGHGGAVVIAGSGVGTGLGSGATSVIMQHHQQQQQQQQQNMHKKNSIRN GGDVLKRGRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRH YMMVKKFASITAMAKAEKRLSRRMVVTASSLGLSEEGASSSSAYGSATES QLAEQQQQQQLTAQQQQQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSM RERRQLDCSPIPRSQSGASPASIASSTVSTSALASHPHVNLLHAAEPHYY NAQALPTAAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYS AAQIYMRPKGGSTTPTPSCSGSTGSGSGSGGSNKKVPPEVPKRTSSITAQ QQTQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAER NLNSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGG AGVYAAQMQAAVAAATAVGGLPPADDHAISSHTSAAQYEQHEQQQHEQQQ LQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLE NTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQ VDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIF VLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGI YERVKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIP DVNKKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVV TLLDMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDE MESLRIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGE QAANSADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISF QSTTTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGM QAYTHANFVQQTQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQA QPLTGRIPGRERKASRTDENGRSTEVooooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=7, Len=1371 C1 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSIMFVGNQGG--PGGS C2 MSEADLK--NISQNSDDDQELLLHQTTQSLLMASSMMFMENQGG--PGAS C3 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFMENQGG--PGAS C4 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFVENPKG--AGGS C5 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFVENPVGGPVGGG C6 MSEADLKNLNLSQNPDGDQELLLHQTTQSLLMASSMMFVENPGG------ C7 MSEADVK--NLSQNTDGDQELLLHQTTQSLLMASSMLFVENPGG------ *****:* *:***.*.******************::*: * * C1 AGGVAP--PGPVSLPLPLSINMPHHHVHAMPYNVDELLRENNALHAKIKE C2 GGGVAL--PGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKE C3 GGGVAL--PGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKE C4 GGGVAL--PGPVSMPLPLSIAMPHHHLHAIPYNVDELLRENNALHAKIKE C5 GGGVGAGVPVPGPVSLPLSIGLPHHQAIQIPYNVDELLRENNALHAKIKE C6 --GVPQ---PGQPVSLPLSIALPH--HHAIPYNVDELLRENSALHAKIKE C7 GGAVPI---PG-PVSLPLSIGLP---HHQIPYNVDDLLRENNALHAKIKE .* .:.***** :* :*****:*****.******** C1 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL C2 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL C3 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL C4 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYEL C5 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYEL C6 LSVERDRLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYEL C7 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYEL **:*************************:***:***************** C1 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C2 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C3 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C4 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C5 AGAQQPGSANASS-CTDGGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C6 AGAQQPGSANASSTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP C7 AGAQQPGSANASS-CTDSGSVGGYVYLQNHYAPGAHSNSAAINYPAQQHP ************: ***.*******************.************ C1 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG C2 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG C3 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG C4 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG C5 QMVYQIQQYPTCHQQQQQQHLQQQQ----HQQHLHQTSAGHYMQVTATAG C6 QMVYQIQQYPTCHQQQQQQHLQQQQQQQQQQQHLHQTGGGHYMQVTATGG C7 QMVYQIQQYPTCHQQQQQQQQQQQHLQQQQQQHMHQTSAGHYMQVTATGG *******************: *** **:***..*********.* C1 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH C2 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH C3 G---QYHHHHMLQGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH C4 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH C5 GGGGQYHHHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH C6 Q----YHHHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH C7 Q----YHHHHMLHGHGHHVHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH *******:*****.**** ************************* C1 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C2 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C3 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C4 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C5 QAQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C6 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER C7 HQQQQQQQQQNMHKKNSIRNGGDVLKRGRAQSAYELSQDLLEKQIELLER : ****** ***************** ********************** C1 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS C2 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTSSS C3 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTSSS C4 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS C5 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS C6 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS C7 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS ***********************************************:** C1 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG C2 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG C3 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG C4 LGLAEEGASSSSAYGSATESQLTEQQQQQQQQ----AQQQQQPRVTIMAG C5 LGLAEEGASSSSAYGSATESQLTEQQQQQLAAQQ-QQQQQQQPRVTIMAG C6 LGLAEEGASSSSAYGSATESQLVEQQQQQ--Q----QQQQQQPRVTIMAG C7 LGLSEEGASSSSAYGSATESQLAEQQQQQQLTAQQQQQQQQQPRVTIMAG ***:******************.****** ************* C1 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS- C2 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS- C3 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS- C4 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS- C5 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS- C6 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVTS C7 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASIASSTVS- *******************************************:****: C1 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDLSYASSAD C2 TSALASHPHVNLLHAAEPHYYNAQALHQGAAYYTSYHGSPHDLNYASSAD C3 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDLSYASSAD C4 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDISYASSAD C5 TSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSAD C6 SSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDISYASSAD C7 TSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSAD :************************* .*************:.****** C1 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C2 TSLNASWVNTSSHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C3 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C4 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C5 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C6 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG C7 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSG- ***********.************************************* C1 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C2 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C3 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C4 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C5 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C6 SGSGSNKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT C7 SG-GSNKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT ** **.******************************************** C1 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ C2 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ C3 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ C4 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ C5 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ C6 AENGSLTSVQSSGSDSSVTSAERNMNSDLGSDRSNSPHTWKRGTALNSSQ C7 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ ************************:************************* C1 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDH C2 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDH C3 QFSTHSADSAGAVSGGGVGVAAGAGVYAAQMQAAVAAATAAGGMPPADDH C4 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGIPPADDH C5 QFSTHSADSAGAISAG-MGVAGGAGVYAAQMQAAVAAATAAGGLPPADDH C6 QFSTHSADSAGAVSGG--GVAGGAGIYAAQMQAAVAAATAAGGHPPADDH C7 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAVGGLPPADDH ************:*.* ***.***:**************.** ****** C1 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C2 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C3 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C4 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C5 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C6 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV C7 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV ************************************************** C1 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C2 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C3 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C4 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C5 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C6 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN C7 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN ************************************************** C1 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C2 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C3 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C4 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C5 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C6 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI C7 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI ************************************************** C1 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C2 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C3 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C4 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C5 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C6 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE C7 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE ************************************************** C1 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C2 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C3 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C4 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C5 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C6 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV C7 DFIKNLRGIDDCHDIDKDMLMGIYERVKSDEFKPGSDHVTQVMKVQATIV ************************:************************* C1 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C2 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C3 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C4 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C5 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C6 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI C7 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI ************************************************** C1 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C2 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C3 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C4 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C5 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C6 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN C7 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN ************************************************** C1 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C2 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C3 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C4 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C5 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C6 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR C7 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR ************************************************** C1 DSGVADVEVCPCPYQQGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ C2 DSGVADVEVCPCPYQPGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ C3 DSGVADVEVCPCPYQPGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ C4 DSGVADVEVCPCPYQPGSQAAGEQAPNSADNSQQLKRSALSNSLLDMHEQ C5 DSGVADVEVCSCPYQPGSQSAGEQAPNSADSSQQLKRSALSNSLLDMHEQ C6 DSGVADVEVCPCPYQAGSQASGEQAPNSADSSQQLKRSALSNSLLDMHEQ C7 DSGVADVEVCPCPYQPGSQASGEQAANSADSSQQLKRSALSNSLLDMHEQ **********.**** ***::****.****.******************* C1 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C2 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C3 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C4 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C5 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C6 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK C7 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK ************************************************** C1 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ C2 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ C3 MRFNMPPAAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ C4 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ C5 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYIMQQQQMLQQQ C6 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ C7 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQTQAAYMLQQQQMLQQQ *******:**************************:****::********* C1 AQMQAQAQAQAQAQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRS C2 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS C3 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS C4 AQMQAQAQAQAQAQAQAQAQAQAQPL----TGRIPGRERKASRTDENGRS C5 AQMQAQAQAQAQAQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRS C6 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS C7 AQMQAQAQAQAQAQAQAQAQAQAQ----PLTGRIPGRERKASRTDENGRS ************************ ******************** C1 TEVoooooooooooooooo-- C2 TEVoooooooooooooooooo C3 TEVoooooooooooooooooo C4 TEVoooooooooooooooooo C5 TEV------------------ C6 TEVooooooooooooooooo- C7 TEVooooooooooooooo--- *** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [65512] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fa