--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Wed Dec 07 01:36:35 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/392/siz-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -10695.93 -10710.60
2 -10695.58 -10708.39
--------------------------------------
TOTAL -10695.74 -10710.01
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/392/siz-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.718019 0.001440 0.651617 0.797436 0.716692 1188.05 1292.90 1.000
r(A<->C){all} 0.074742 0.000101 0.055617 0.094168 0.074204 1100.04 1215.67 1.000
r(A<->G){all} 0.302438 0.000509 0.261505 0.350206 0.301942 613.26 878.29 1.000
r(A<->T){all} 0.109547 0.000300 0.076929 0.143360 0.108996 939.38 964.79 1.000
r(C<->G){all} 0.049740 0.000045 0.036174 0.061904 0.049633 1175.15 1253.50 1.000
r(C<->T){all} 0.399133 0.000547 0.354723 0.444944 0.398795 907.13 1011.11 1.000
r(G<->T){all} 0.064399 0.000108 0.043666 0.083811 0.063925 941.53 1032.22 1.000
pi(A){all} 0.218305 0.000034 0.206442 0.229373 0.218353 990.07 1027.12 1.000
pi(C){all} 0.318365 0.000045 0.306157 0.331888 0.318265 1031.14 1070.66 1.002
pi(G){all} 0.292141 0.000045 0.279795 0.305875 0.292279 1110.61 1129.09 1.002
pi(T){all} 0.171189 0.000028 0.160614 0.181353 0.171066 978.73 1103.39 1.000
alpha{1,2} 0.046392 0.000571 0.000138 0.079675 0.050246 1128.56 1213.13 1.000
alpha{3} 6.504473 1.644087 4.208578 9.104711 6.372253 1497.42 1499.21 1.000
pinvar{all} 0.404776 0.000530 0.362987 0.451592 0.404819 1029.47 1265.24 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -9536.574274
Model 2: PositiveSelection -9536.574274
Model 0: one-ratio -9619.04611
Model 3: discrete -9533.759829
Model 7: beta -9543.835759
Model 8: beta&w>1 -9533.811376
Model 0 vs 1 164.9436719999976
Model 2 vs 1 0.0
Model 8 vs 7 20.048765999999887
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_siz-PB)
Pr(w>1) post mean +- SE for w
41 G 0.891 2.051
46 P 1.000** 2.272
47 G 0.933 2.135
57 N 0.911 2.091
60 V 0.944 2.158
62 A 0.891 2.051
226 G 0.641 1.537
502 L 0.947 2.166
699 M 0.922 2.113
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_siz-PB)
Pr(w>1) post mean +- SE for w
41 G 0.861 1.449 +- 0.470
46 P 0.983* 1.576 +- 0.330
47 G 0.889 1.480 +- 0.445
48 P 0.617 1.132 +- 0.644
57 N 0.862 1.454 +- 0.453
60 V 0.887 1.481 +- 0.437
61 H 0.576 1.078 +- 0.641
62 A 0.848 1.438 +- 0.463
226 G 0.734 1.284 +- 0.582
502 L 0.902 1.495 +- 0.425
699 M 0.884 1.474 +- 0.446
1121 Q 0.570 1.068 +- 0.650
>C1
MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSIMFVGNQGGPGGSAGGV
APPGPVSLPLPLSINMPHHHVHAMPYNVDELLRENNALHAKIKELSLERD
RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP
GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ
QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH
HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG
GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY
MMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQ
LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD
CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALPQ
GAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMR
PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL
LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD
LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVYA
AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA
AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG
VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL
RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA
IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK
SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK
ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM
PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR
IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQQGSQASGEQAPNS
ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT
SSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYTH
ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQAQ
PLTGRIPGRERKASRTDENGRSTEVoooooooooooooooo
>C2
MSEADLKNISQNSDDDQELLLHQTTQSLLMASSMMFMENQGGPGASGGGV
ALPGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKELSLERD
RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP
GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ
QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH
HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG
GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY
MMVKKFASITAMAKAEKRLSRRMVVTSSSLGLAEEGASSSSAYGSATESQ
LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD
CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALHQ
GAAYYTSYHGSPHDLNYASSADTSLNASWVNTSSHSPHTPYYSAAQIYMR
PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL
LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD
LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGVYA
AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA
AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG
VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL
RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA
IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK
SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK
ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM
PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR
IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGEQAPNS
ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT
SSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYTH
ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQPL
TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo
>C3
MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFMENQGGPGASGGGV
ALPGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKELSLERD
RLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYELAGAQQP
GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ
QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLQGHGH
HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG
GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY
MMVKKFASITAMAKAEKRLSRRMVVTSSSLGLAEEGASSSSAYGSATESQ
LTEQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQLD
CSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQALPQ
GAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYSAAQIYMR
PKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQTQL
LLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLNSD
LGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAAGAGVYA
AQMQAAVAAATAAGGMPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAAA
AAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQG
VARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVAL
RKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAFA
IIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRVK
SDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNKK
ERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLDM
PNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESLR
IEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGEQAPNS
ADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTTT
SSASRENAAAIAAAANAAAAAKMRFNMPPAAAIATPSNVYAAPGMQAYTH
ANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQPL
TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo
>C4
MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFVENPKGAGGSGGGV
ALPGPVSMPLPLSIAMPHHHLHAIPYNVDELLRENNALHAKIKELSLERD
RLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYELAGAQQP
GSANASTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQ
QYPTCHQQQQQQHLQQQQHLHQTGAGHYMQVTATGGGQYHHHHMLHGHGH
HAHHHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIRNG
GDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRHY
MMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATESQ
LTEQQQQQQQQAQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQ
LDCSPIPRSQSGASPASISSSTVSTSALASHPHVNLLHAAEPHYYNAQAL
PQGAAYYTSYHGSPHDISYASSADTSLNASWVNTSGHSPHTPYYSAAQIY
MRPKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPPEVPKRTSSITAQQQT
QLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNLN
SDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGGAGV
YAAQMQAAVAAATAAGGIPPADDHAISSHTSAAQYEQHEQQQHEQQQLQA
AAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTP
QGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDV
ALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLA
FAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDR
VKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVN
KKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLL
DMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMES
LRIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQAAGEQAP
NSADNSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQST
TTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAY
THANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQPL
TGRIPGRERKASRTDENGRSTEVoooooooooooooooooo
>C5
MSEADLKNLSQNSDGDQELLLHQTTQSLLMASSMMFVENPVGGPVGGGGG
GVGAGVPVPGPVSLPLSIGLPHHQAIQIPYNVDELLRENNALHAKIKELS
LERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYELAG
AQQPGSANASSCTDGGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMV
YQIQQYPTCHQQQQQQHLQQQQHQQHLHQTSAGHYMQVTATAGGGGGQYH
HHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQHQAQQQQQ
QNMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARN
AAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGAS
SSSAYGSATESQLTEQQQQQLAAQQQQQQQQQPRVTIMAGPAGAASPGLS
RTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVSTSALASHPHVN
LLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSADTSLNASWVNTS
GHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGGSGSGSSKKVPP
EVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQS
SGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAG
AISAGMGVAGGAGVYAAQMQAAVAAATAAGGLPPADDHAISSHTSAAQYE
QHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKG
ITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSC
FAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADI
VGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDC
HDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRR
LVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTF
RNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAE
DLKESISEMDEMESLRIEAELERQKSARNRAPGNAENRDSGVADVEVCSC
PYQPGSQSAGEQAPNSADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSV
GSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIA
TPSNVYAAPGMQAYTHANFVQQSQAAYIMQQQQMLQQQAQMQAQAQAQAQ
AQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRSTEV
>C6
MSEADLKNLNLSQNPDGDQELLLHQTTQSLLMASSMMFVENPGGGVPQPG
QPVSLPLSIALPHHHAIPYNVDELLRENSALHAKIKELSVERDRLLCEVS
NLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYELAGAQQPGSANASS
TCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHPQMVYQIQQYPTCH
QQQQQQHLQQQQQQQQQQQHLHQTGGGHYMQVTATGGQYHHHHMLHGHGH
HAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQHQQQQQQQQNMHKKNSIR
NGGDVLKRTRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFR
HYMMVKKFASITAMAKAEKRLSRRMVVTASSLGLAEEGASSSSAYGSATE
SQLVEQQQQQQQQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSMRERRQ
LDCSPIPRSQSGASPASISSSTVTSSSALASHPHVNLLHAAEPHYYNAQA
LPTAAAYYTSYHGSPHDISYASSADTSLNASWVNTSGHSPHTPYYSAAQI
YMRPKGGSTTPTPSCSGSTGSGSGGSGSGSNKKVPPEVPKRTSSITAQQQ
TQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAERNM
NSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVAGGAGIY
AAQMQAAVAAATAAGGHPPADDHAISSHTSAAQYEQHEQQQHEQQQLQAA
AAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLENTPQ
GVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQVDVA
LRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIFVLAF
AIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGIYDRV
KSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIPDVNK
KERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVVTLLD
MPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDEMESL
RIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQAGSQASGEQAPN
SADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISFQSTT
TSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGMQAYT
HANFVQQSQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQAQAQP
LTGRIPGRERKASRTDENGRSTEVooooooooooooooooo
>C7
MSEADVKNLSQNTDGDQELLLHQTTQSLLMASSMLFVENPGGGGAVPIPG
PVSLPLSIGLPHHQIPYNVDDLLRENNALHAKIKELSLERDRLLCEVSNL
RLELDMSELKRLPIDLDENFPQKSLERSGSTQYELAGAQQPGSANASSCT
DSGSVGGYVYLQNHYAPGAHSNSAAINYPAQQHPQMVYQIQQYPTCHQQQ
QQQQQQQQHLQQQQQQHMHQTSAGHYMQVTATGGQYHHHHMLHGHGHHVH
HHGHGGAVVIAGSGVGTGLGSGATSVIMQHHQQQQQQQQQNMHKKNSIRN
GGDVLKRGRAQSAYELSQDLLEKQIELLERKYGGVRARNAAVTIQRAFRH
YMMVKKFASITAMAKAEKRLSRRMVVTASSLGLSEEGASSSSAYGSATES
QLAEQQQQQQLTAQQQQQQQQQPRVTIMAGPAGAASPGLSRTPPTRSLSM
RERRQLDCSPIPRSQSGASPASIASSTVSTSALASHPHVNLLHAAEPHYY
NAQALPTAAAYYTSYHGSPHDLSYASSADTSLNASWVNTSGHSPHTPYYS
AAQIYMRPKGGSTTPTPSCSGSTGSGSGSGGSNKKVPPEVPKRTSSITAQ
QQTQLLLLQRQTPPPPSLLRTNGLCKTAENGSLTSVQSSGSDSSVTSAER
NLNSDLGSDRSNSPHTWKRGTALNSSQQFSTHSADSAGAVSGGGVGVAGG
AGVYAAQMQAAVAAATAVGGLPPADDHAISSHTSAAQYEQHEQQQHEQQQ
LQAAAAAAGVAQNYKMSETIRKRQYRVGLNLFNKKPEKGITYLIRRGFLE
NTPQGVARFLITRKGLSRQMIGEYLGNLQNQFNMAVLSCFAMELDLSGRQ
VDVALRKFQAYFRMPGEAQKIERLMEIFSQRYCECNADIVGRLRSSDTIF
VLAFAIIMLNTDLHTPNLKPERRMRVEDFIKNLRGIDDCHDIDKDMLMGI
YERVKSDEFKPGSDHVTQVMKVQATIVGKKPNLALPHRRLVCYCRLYEIP
DVNKKERPGVHQREVFLFNDLLVITKIFSKKKTSVTYTFRNSFPLCGTVV
TLLDMPNYPFCIQLSQKVDGKILITFNARNEHDRCKFAEDLKESISEMDE
MESLRIEAELERQKSARNRAPGNAENRDSGVADVEVCPCPYQPGSQASGE
QAANSADSSQQLKRSALSNSLLDMHEQFGNEKPQRRGSVGSLDSGMSISF
QSTTTSSASRENAAAIAAAANAAAAAKMRFNMPPTAAIATPSNVYAAPGM
QAYTHANFVQQTQAAYMLQQQQMLQQQAQMQAQAQAQAQAQAQAQAQAQA
QPLTGRIPGRERKASRTDENGRSTEVooooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=7, Len=1371
C1 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSIMFVGNQGG--PGGS
C2 MSEADLK--NISQNSDDDQELLLHQTTQSLLMASSMMFMENQGG--PGAS
C3 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFMENQGG--PGAS
C4 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFVENPKG--AGGS
C5 MSEADLK--NLSQNSDGDQELLLHQTTQSLLMASSMMFVENPVGGPVGGG
C6 MSEADLKNLNLSQNPDGDQELLLHQTTQSLLMASSMMFVENPGG------
C7 MSEADVK--NLSQNTDGDQELLLHQTTQSLLMASSMLFVENPGG------
*****:* *:***.*.******************::*: * *
C1 AGGVAP--PGPVSLPLPLSINMPHHHVHAMPYNVDELLRENNALHAKIKE
C2 GGGVAL--PGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKE
C3 GGGVAL--PGPVSLPLPLSIAMPHHHVHAIPYNVDELLRENNALHAKIKE
C4 GGGVAL--PGPVSMPLPLSIAMPHHHLHAIPYNVDELLRENNALHAKIKE
C5 GGGVGAGVPVPGPVSLPLSIGLPHHQAIQIPYNVDELLRENNALHAKIKE
C6 --GVPQ---PGQPVSLPLSIALPH--HHAIPYNVDELLRENSALHAKIKE
C7 GGAVPI---PG-PVSLPLSIGLP---HHQIPYNVDDLLRENNALHAKIKE
.* .:.***** :* :*****:*****.********
C1 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL
C2 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL
C3 LSLERDRLLCEVSNLRLELDMSELKRLPVDLDDNFPQKSLERSGSTQYEL
C4 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYEL
C5 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYEL
C6 LSVERDRLLCEVSNLRLELDMSELKRLPIDLDDNFPQKSLERSGSTQYEL
C7 LSLERDRLLCEVSNLRLELDMSELKRLPIDLDENFPQKSLERSGSTQYEL
**:*************************:***:*****************
C1 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C2 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C3 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C4 AGAQQPGSANAST-CTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C5 AGAQQPGSANASS-CTDGGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C6 AGAQQPGSANASSTCTDSGSVGGYVYLQNHYAPGAHSSSAAINYPAQQHP
C7 AGAQQPGSANASS-CTDSGSVGGYVYLQNHYAPGAHSNSAAINYPAQQHP
************: ***.*******************.************
C1 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG
C2 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG
C3 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG
C4 QMVYQIQQYPTCHQQQQQQHLQQQ-------QHLHQTGAGHYMQVTATGG
C5 QMVYQIQQYPTCHQQQQQQHLQQQQ----HQQHLHQTSAGHYMQVTATAG
C6 QMVYQIQQYPTCHQQQQQQHLQQQQQQQQQQQHLHQTGGGHYMQVTATGG
C7 QMVYQIQQYPTCHQQQQQQQQQQQHLQQQQQQHMHQTSAGHYMQVTATGG
*******************: *** **:***..*********.*
C1 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH
C2 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH
C3 G---QYHHHHMLQGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH
C4 G---QYHHHHMLHGHGHHAHHHG--GAVVIAGSGVGTGLGSGATSVIMQH
C5 GGGGQYHHHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH
C6 Q----YHHHHMLHGHGHHAHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH
C7 Q----YHHHHMLHGHGHHVHHHGHGGAVVIAGSGVGTGLGSGATSVIMQH
*******:*****.**** *************************
C1 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C2 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C3 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C4 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C5 QAQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C6 QQQQQQQQ--NMHKKNSIRNGGDVLKRTRAQSAYELSQDLLEKQIELLER
C7 HQQQQQQQQQNMHKKNSIRNGGDVLKRGRAQSAYELSQDLLEKQIELLER
: ****** ***************** **********************
C1 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS
C2 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTSSS
C3 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTSSS
C4 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS
C5 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS
C6 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS
C7 KYGGVRARNAAVTIQRAFRHYMMVKKFASITAMAKAEKRLSRRMVVTASS
***********************************************:**
C1 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG
C2 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG
C3 LGLAEEGASSSSAYGSATESQLTEQQQQQQ------AQQQQQPRVTIMAG
C4 LGLAEEGASSSSAYGSATESQLTEQQQQQQQQ----AQQQQQPRVTIMAG
C5 LGLAEEGASSSSAYGSATESQLTEQQQQQLAAQQ-QQQQQQQPRVTIMAG
C6 LGLAEEGASSSSAYGSATESQLVEQQQQQ--Q----QQQQQQPRVTIMAG
C7 LGLSEEGASSSSAYGSATESQLAEQQQQQQLTAQQQQQQQQQPRVTIMAG
***:******************.****** *************
C1 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS-
C2 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS-
C3 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS-
C4 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS-
C5 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVS-
C6 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASISSSTVTS
C7 PAGAASPGLSRTPPTRSLSMRERRQLDCSPIPRSQSGASPASIASSTVS-
*******************************************:****:
C1 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDLSYASSAD
C2 TSALASHPHVNLLHAAEPHYYNAQALHQGAAYYTSYHGSPHDLNYASSAD
C3 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDLSYASSAD
C4 TSALASHPHVNLLHAAEPHYYNAQALPQGAAYYTSYHGSPHDISYASSAD
C5 TSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSAD
C6 SSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDISYASSAD
C7 TSALASHPHVNLLHAAEPHYYNAQALPTAAAYYTSYHGSPHDLSYASSAD
:************************* .*************:.******
C1 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C2 TSLNASWVNTSSHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C3 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C4 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C5 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C6 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSGG
C7 TSLNASWVNTSGHSPHTPYYSAAQIYMRPKGGSTTPTPSCSGSTGSGSG-
***********.*************************************
C1 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C2 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C3 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C4 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C5 SGSGSSKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C6 SGSGSNKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
C7 SG-GSNKKVPPEVPKRTSSITAQQQTQLLLLQRQTPPPPSLLRTNGLCKT
** **.********************************************
C1 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
C2 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
C3 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
C4 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
C5 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
C6 AENGSLTSVQSSGSDSSVTSAERNMNSDLGSDRSNSPHTWKRGTALNSSQ
C7 AENGSLTSVQSSGSDSSVTSAERNLNSDLGSDRSNSPHTWKRGTALNSSQ
************************:*************************
C1 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDH
C2 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGMPPADDH
C3 QFSTHSADSAGAVSGGGVGVAAGAGVYAAQMQAAVAAATAAGGMPPADDH
C4 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAAGGIPPADDH
C5 QFSTHSADSAGAISAG-MGVAGGAGVYAAQMQAAVAAATAAGGLPPADDH
C6 QFSTHSADSAGAVSGG--GVAGGAGIYAAQMQAAVAAATAAGGHPPADDH
C7 QFSTHSADSAGAVSGGGVGVAGGAGVYAAQMQAAVAAATAVGGLPPADDH
************:*.* ***.***:**************.** ******
C1 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C2 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C3 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C4 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C5 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C6 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
C7 AISSHTSAAQYEQHEQQQHEQQQLQAAAAAAGVAQNYKMSETIRKRQYRV
**************************************************
C1 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C2 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C3 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C4 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C5 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C6 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
C7 GLNLFNKKPEKGITYLIRRGFLENTPQGVARFLITRKGLSRQMIGEYLGN
**************************************************
C1 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C2 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C3 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C4 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C5 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C6 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
C7 LQNQFNMAVLSCFAMELDLSGRQVDVALRKFQAYFRMPGEAQKIERLMEI
**************************************************
C1 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C2 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C3 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C4 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C5 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C6 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
C7 FSQRYCECNADIVGRLRSSDTIFVLAFAIIMLNTDLHTPNLKPERRMRVE
**************************************************
C1 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C2 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C3 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C4 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C5 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C6 DFIKNLRGIDDCHDIDKDMLMGIYDRVKSDEFKPGSDHVTQVMKVQATIV
C7 DFIKNLRGIDDCHDIDKDMLMGIYERVKSDEFKPGSDHVTQVMKVQATIV
************************:*************************
C1 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C2 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C3 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C4 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C5 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C6 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
C7 GKKPNLALPHRRLVCYCRLYEIPDVNKKERPGVHQREVFLFNDLLVITKI
**************************************************
C1 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C2 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C3 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C4 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C5 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C6 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
C7 FSKKKTSVTYTFRNSFPLCGTVVTLLDMPNYPFCIQLSQKVDGKILITFN
**************************************************
C1 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C2 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C3 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C4 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C5 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C6 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
C7 ARNEHDRCKFAEDLKESISEMDEMESLRIEAELERQKSARNRAPGNAENR
**************************************************
C1 DSGVADVEVCPCPYQQGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ
C2 DSGVADVEVCPCPYQPGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ
C3 DSGVADVEVCPCPYQPGSQASGEQAPNSADNSQQLKRSALSNSLLDMHEQ
C4 DSGVADVEVCPCPYQPGSQAAGEQAPNSADNSQQLKRSALSNSLLDMHEQ
C5 DSGVADVEVCSCPYQPGSQSAGEQAPNSADSSQQLKRSALSNSLLDMHEQ
C6 DSGVADVEVCPCPYQAGSQASGEQAPNSADSSQQLKRSALSNSLLDMHEQ
C7 DSGVADVEVCPCPYQPGSQASGEQAANSADSSQQLKRSALSNSLLDMHEQ
**********.**** ***::****.****.*******************
C1 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C2 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C3 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C4 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C5 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C6 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
C7 FGNEKPQRRGSVGSLDSGMSISFQSTTTSSASRENAAAIAAAANAAAAAK
**************************************************
C1 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ
C2 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ
C3 MRFNMPPAAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ
C4 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ
C5 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYIMQQQQMLQQQ
C6 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQSQAAYMLQQQQMLQQQ
C7 MRFNMPPTAAIATPSNVYAAPGMQAYTHANFVQQTQAAYMLQQQQMLQQQ
*******:**************************:****::*********
C1 AQMQAQAQAQAQAQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRS
C2 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS
C3 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS
C4 AQMQAQAQAQAQAQAQAQAQAQAQPL----TGRIPGRERKASRTDENGRS
C5 AQMQAQAQAQAQAQAQAQAQAQAQAQAQPLTGRIPGRERKASRTDENGRS
C6 AQMQAQAQAQAQAQAQAQAQAQAQAQ--PLTGRIPGRERKASRTDENGRS
C7 AQMQAQAQAQAQAQAQAQAQAQAQ----PLTGRIPGRERKASRTDENGRS
************************ ********************
C1 TEVoooooooooooooooo--
C2 TEVoooooooooooooooooo
C3 TEVoooooooooooooooooo
C4 TEVoooooooooooooooooo
C5 TEV------------------
C6 TEVooooooooooooooooo-
C7 TEVooooooooooooooo---
***
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1341 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1341 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [65512]
Library Relaxation: Multi_proc [72]
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/392/siz-PB/batch/allfiles/tcoffee/input.fasta.prot.fa 