--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Tue Dec 06 14:31:43 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/388/Shab-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -7881.12 -7895.26
2 -7880.89 -7894.27
--------------------------------------
TOTAL -7881.00 -7894.88
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.375781 0.000887 0.315628 0.430843 0.374301 1169.10 1335.05 1.000
r(A<->C){all} 0.148270 0.000302 0.114531 0.182140 0.147441 1183.62 1239.25 1.000
r(A<->G){all} 0.249168 0.000543 0.200649 0.291309 0.248293 859.15 1000.43 1.001
r(A<->T){all} 0.129051 0.000473 0.089464 0.172467 0.128001 962.46 1033.02 1.000
r(C<->G){all} 0.131857 0.000230 0.102287 0.160234 0.131339 867.80 1093.07 1.001
r(C<->T){all} 0.268531 0.000650 0.219370 0.320332 0.268262 690.84 904.38 1.000
r(G<->T){all} 0.073123 0.000200 0.047466 0.102670 0.072330 1239.75 1271.47 1.000
pi(A){all} 0.241719 0.000052 0.227680 0.256004 0.241696 877.87 1092.29 1.001
pi(C){all} 0.285776 0.000059 0.270798 0.300436 0.285894 1079.69 1103.22 1.000
pi(G){all} 0.295136 0.000060 0.279943 0.309773 0.295277 1166.40 1209.58 1.000
pi(T){all} 0.177369 0.000045 0.165145 0.191276 0.177087 994.36 1149.22 1.000
alpha{1,2} 0.298331 0.003850 0.188551 0.421689 0.292333 1141.77 1204.93 1.000
alpha{3} 1.861871 0.505250 0.728315 3.397125 1.746323 1055.27 1084.02 1.000
pinvar{all} 0.670345 0.001331 0.598625 0.732051 0.675009 863.66 983.58 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -6829.806418
Model 2: PositiveSelection -6813.306042
Model 0: one-ratio -7000.752864
Model 3: discrete -6812.360093
Model 7: beta -6836.195333
Model 8: beta&w>1 -6813.909092
Model 0 vs 1 341.89289199999985
Model 2 vs 1 33.00075199999992
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Shab-PB)
Pr(w>1) post mean +- SE for w
51 T 0.549 2.808
174 A 0.616 3.029
176 V 0.544 2.792
178 S 0.981* 4.231
180 A 0.842 3.774
181 G 0.722 3.377
183 G 0.712 3.343
184 A 0.945 4.113
185 G 0.870 3.865
186 T 0.613 3.019
188 T 0.670 3.207
192 S 0.980* 4.227
195 S 0.997** 4.282
196 G 0.922 4.038
247 H 0.640 3.109
857 G 0.539 2.777
862 G 0.843 3.776
890 P 0.656 3.162
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Shab-PB)
Pr(w>1) post mean +- SE for w
51 T 0.833 3.037 +- 1.004
53 Q 0.504 2.151 +- 1.337
56 H 0.763 2.865 +- 1.099
57 S 0.539 2.246 +- 1.337
58 K 0.776 2.887 +- 1.101
59 Q 0.703 2.713 +- 1.170
60 Q 0.668 2.604 +- 1.242
120 A 0.833 3.039 +- 0.983
139 G 0.621 2.471 +- 1.293
149 P 0.655 2.590 +- 1.207
154 S 0.738 2.784 +- 1.180
157 L 0.518 2.191 +- 1.338
160 G 0.632 2.503 +- 1.286
173 P 0.699 2.681 +- 1.227
174 A 0.869 3.133 +- 0.908
176 V 0.853 3.090 +- 0.943
177 G 0.685 2.642 +- 1.244
178 S 0.991** 3.430 +- 0.457
179 G 0.696 2.673 +- 1.231
180 A 0.949 3.329 +- 0.663
181 G 0.906 3.224 +- 0.810
182 A 0.613 2.451 +- 1.299
183 G 0.901 3.213 +- 0.824
184 A 0.980* 3.403 +- 0.522
185 G 0.952* 3.337 +- 0.651
186 T 0.869 3.132 +- 0.908
188 T 0.889 3.183 +- 0.857
191 G 0.693 2.665 +- 1.236
192 S 0.991** 3.428 +- 0.460
195 S 0.998** 3.444 +- 0.415
196 G 0.971* 3.382 +- 0.567
244 V 0.565 2.320 +- 1.326
247 H 0.883 3.166 +- 0.873
857 G 0.833 3.036 +- 1.001
859 A 0.667 2.595 +- 1.258
862 G 0.950* 3.331 +- 0.658
885 A 0.744 2.816 +- 1.125
890 P 0.895 3.194 +- 0.842
893 A 0.824 3.015 +- 1.001
895 G 0.696 2.677 +- 1.220
903 G 0.500 2.161 +- 1.306
Model 8 vs 7 44.57248199999958
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Shab-PB)
Pr(w>1) post mean +- SE for w
51 T 0.675 2.710
56 H 0.557 2.412
58 K 0.586 2.486
120 A 0.662 2.677
154 S 0.547 2.387
174 A 0.726 2.840
176 V 0.696 2.764
178 S 0.981* 3.487
180 A 0.885 3.242
181 G 0.796 3.016
183 G 0.787 2.995
184 A 0.955* 3.421
185 G 0.894 3.266
186 T 0.725 2.839
188 T 0.763 2.935
192 S 0.980* 3.484
195 S 0.996** 3.523
196 G 0.935 3.370
247 H 0.751 2.902
857 G 0.671 2.700
862 G 0.887 3.249
885 A 0.531 2.346
890 P 0.773 2.960
893 A 0.646 2.637
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Shab-PB)
Pr(w>1) post mean +- SE for w
51 T 0.924 3.072 +- 0.843
53 Q 0.633 2.223 +- 1.414
54 Q 0.577 2.062 +- 1.432
56 H 0.913 3.043 +- 0.865
57 S 0.661 2.307 +- 1.394
58 K 0.904 3.013 +- 0.913
59 Q 0.874 2.936 +- 0.984
60 Q 0.807 2.737 +- 1.174
66 Q 0.602 2.135 +- 1.438
73 K 0.501 1.833 +- 1.461
120 A 0.953* 3.152 +- 0.707
139 G 0.749 2.565 +- 1.285
149 P 0.847 2.857 +- 1.054
154 S 0.844 2.841 +- 1.100
157 L 0.643 2.255 +- 1.407
160 G 0.758 2.593 +- 1.271
173 P 0.815 2.757 +- 1.166
174 A 0.956* 3.163 +- 0.694
176 V 0.956* 3.163 +- 0.691
177 G 0.800 2.715 +- 1.197
178 S 0.999** 3.275 +- 0.444
179 G 0.811 2.746 +- 1.175
180 A 0.989* 3.251 +- 0.508
181 G 0.971* 3.201 +- 0.622
182 A 0.742 2.544 +- 1.297
183 G 0.969* 3.196 +- 0.633
184 A 0.997** 3.270 +- 0.457
185 G 0.987* 3.245 +- 0.525
186 T 0.956* 3.163 +- 0.693
188 T 0.965* 3.185 +- 0.654
191 G 0.806 2.733 +- 1.186
192 S 0.999** 3.274 +- 0.445
195 S 1.000** 3.277 +- 0.438
196 G 0.994** 3.264 +- 0.476
223 I 0.705 2.448 +- 1.306
244 V 0.691 2.396 +- 1.362
247 H 0.967* 3.191 +- 0.640
851 I 0.593 2.106 +- 1.434
857 G 0.928 3.082 +- 0.826
859 A 0.788 2.680 +- 1.219
862 G 0.990* 3.252 +- 0.505
885 A 0.898 3.002 +- 0.914
890 P 0.970* 3.200 +- 0.622
893 A 0.950* 3.145 +- 0.716
894 E 0.634 2.238 +- 1.379
895 G 0.824 2.784 +- 1.141
896 G 0.637 2.238 +- 1.404
903 G 0.663 2.317 +- 1.373
>C1
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
TQQQQHSKQQQQQQQQQQQQLQLKQHQQQQQDILYQQHNEAIAIARGLQA
ATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAGGAAYH
LGPANPAGLVSRHLDYGDGGHLAGPSAGLPAGAVGSGAGAGAGAGASVTG
SGSGAGTGTGTGAGSGSGSGAAGKEVRYAPFPVASPTHSIPTTSQQIVGS
VGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIA
QSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCD
DYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGV
DELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKY
LWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQD
NPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFV
SLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTL
RNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGIT
MTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQM
RREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQT
NVVHPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPAT
TGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMA
MESYRREQQALLQQQQQQQQQMLQMQQIQQKAPNGNGGATGGGVANNLAM
VAASSAATAVATATNASNASNTAPGSEGAEGGGDGDGGGVDDDNLSQAKG
LPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGL
PGCHGECIPLRANSVoooooooooooooooo
>C2
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA
TQQQQLSKQQQQQQQHQQQQLQLKQQQQQQQQQQQQDILYQQHNEAIAIA
RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG
GAAYHLGPANTAGLVSRHLDYADGGHLAGPSAGLPAGAVGSGAGAGTGAS
AGASVTGSGAGAGSGATGTGTGTGTGAGSGSGGGAAGKEVRYAPFPVASP
THSIPTTSQQIVGSVGGGGVGGASSQSISGGVPTHSQSNTTGALQRTHSR
SMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRL
RECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEM
CVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDE
EEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNT
LPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGG
LNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKL
ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTK
FVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIP
IIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKS
MDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGN
STEGESTSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPY
SFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQQMLQMQQIQQKAPNG
NGGATGGGGVANNLAMVAASSAATAVATATNASNASNTAPGTEGAEGGGD
GDGGVVDDDNLSQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQ
DVPVEFECCFCTTKGLPGCHGECIPLRANSV
>C3
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA
TQQQQHSKQQQQQQQQQQQQQLQLKQQQQQDILYQQHNEAVAIARGLQAA
TPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSIPAAGGAAYHL
GPANPAGLVSRHLDYTDGGHLAGPSAGLPAGAVGSGAGAGAGTGAGAGAS
VTGSGSGSGAGPGTGTGAGSGSGSGAAGKEVRYAPFPVASPTHSIPTTSQ
QIVGSVGGGGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPE
PFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAI
VELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDL
EYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCA
EYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDN
GTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAI
LPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQS
LGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFW
WAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEF
YKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVD
TGKQTNVVHPKGKRQSSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTS
GRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNAR
QTSMMAMESYRREQQALLLQQQQQQQQQQQMLQMQQTQQKAPNGNGGATG
GGVANNLAMVAASSAATAVATATNATNASNTAPGSEGAEGGGDGDGGGVD
DDNLSQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFE
CCFCTTKGLPGCHGECIPLRANSVooooooo
>C4
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
TQQQQLSKQHQQQQQLQLKQQQQQQQQQQQQQQQQDILYQQHNEAIAIAR
GLQAATPADLGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAGG
AAYHLGPANPAGLVSRHLDYADGGHLAGPSAGLPLAAVPGSGAVSAAVSG
AGSGGAGSGGAGAGAGAVTGSGPAAAGKEVRYAPFPVASPTHSIPTTSQQ
IVGSVGGGGVGGGGGGSQSISGGGPTHSQSNTTGALQRTHSRSMSSIPPP
EPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEA
IVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDD
LEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKC
AEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHID
NGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLA
ILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQ
SLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETF
WWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAE
FYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIV
DTGKQTNVVHPKGKRQSTPNIGRLDVQSAPGHNLSQTDGNSTEGESTSGR
NPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQT
SMMAMESYRREQQALQLQQQQQQQQQQQMLQMQQIQQKAPNGGGSGSGVA
NNLAMVAASSAATAVATATNTTNTSNTAQGSEGAEGGGGEDGGGVDDDNL
SQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFC
TTKGLPGCHGECIPLRANSVooooooooooo
>C5
MVGERDRDREAVRWATGELTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
TQQQQLSKQQQQQQQLQLKQQQQQQQQQQQDILYQQHNEAIAIARGLQAA
TPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAGGAPYHL
GPANPAGLVSRHMDYADGGHLAGPSAGLPAGAVGAGTGSGLVSGGSAVAG
PGAGSGAGTGSAGGAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGV
GGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVN
SRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLAD
NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLE
SCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLE
KPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAM
VEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLE
TNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE
LGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGY
GDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKAL
KRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPK
GKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCY
KNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRR
EQQALLLQQQQQQQQQTQQQMLQMQQIQQKAPNGGGSGSGVANNLAMVAA
SSAATAVATATNASNNSNIAPGSAEGAEGGDGAGVDDDNLSQAKGLPIQM
MITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHG
ECIPLRANSVooooooooooooooooooooo
>C6
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQQ
QQATQQQQQQHAKQQQQQQQLKQQQHQQELLYQQHNEAIAIARGLQAATP
ADVGDNQPYYDTSGNVDWERAMGAGGAGAYGGVGIGSLPAGGGAAYHLGP
ANAAGLVPRHLDYADGGHLAGPSAGLSAGALAAGAGTAAVGGAAGAPGGA
GQGGTAAGSKEVRYAPFPVASPTHSIPTTSNQQLGGSVVGGGGVGGASSQ
SISGGVPTAHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSI
NVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFF
DRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQH
KYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTS
FAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVC
ITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNA
TDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLM
LFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYP
TTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA
LDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS
TPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDH
VANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQAL
LLQQQQQQQQMLQMQQIQKAPNGGGAAQGVTNNLAIMAASSAATAVATAS
TSNTSNTAQGSEGQGAEGGGEGADEDNLSQAKGLPIQMMITPGEVAELRR
QVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECIPLRANSVoo
ooooooooooooooooooooooooooooooo
>C7
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
TQQQQQQLSRQQQQQQQQQQQQQQQQQLQHKQQQDILYQQHNEAIAIARG
LQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAGGA
AYHLGPANPAGLVPRHMDYADGGHLAGPSAGLPAGGVGGPAVTGSGSTGA
GAGAGTGPGAGAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGVGGA
TSSQSISGGGGGGVPTNHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSK
AVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYS
LADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDEL
YLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWE
LLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQ
LAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLF
LLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNS
YKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTT
VGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRRE
KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVV
HPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGT
GCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMES
YRREQQALLLQQQQQQQQQQQQQMLQMQQMQQKAPNGGGTGSGVANNLAM
VAASSAATAVATASSSNTAQGSEGAAEGGGGEGGGADEDNLSQAKGLPIQ
MMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKoooooo
ooooooooooooooooooooooooooooooo
>C8
MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
TQQQQQQLTRQQQQLQQQQHKQQQQDILYQQQNEAIAIARGLQAATPADI
GDNQPYYDTSGNVDWERAMGAGGAGAYGGLGIGSLPAAGHVAYHLGPANA
PGLAARHLDYADGGHLAGPSAGVSVGSGAVSITGSGSGGAIGAGGAAGAA
GAAGATAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGVGGATSSQS
ISGGGGGGGGAPTNPSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAAN
SRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLAD
NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLE
SCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLE
KPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAM
VEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLE
TNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE
LGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGY
GDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKAL
KRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPK
GKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCY
KNYDHVANLRNSNLHHRRGSSSEQDAVPPYNFDNPNARQTSMMAMESYRR
EQQALLLQQQQQQQKQQQQQQQMLQMQQMQQKAAPNGGATGSGVANNLAI
VAASSAATAVATASSSNTAPGSEVAEGGGGDGGGGEEGVADDDNLSQAKG
LPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGL
PGCHGECIPLRANSVoooooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=8, Len=1090
C1 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
C2 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA
C3 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA
C4 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
C5 MVGERDRDREAVRWATGELTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
C6 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQQ
C7 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
C8 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA
****************** ***************** ************
C1 TQQQQHSKQQQQQQQQQQQQLQLKQHQQQQQ-----DILYQQHNEAIAIA
C2 TQQQQLSKQQQQQQQHQQQQLQLKQQQQQQQQQQQQDILYQQHNEAIAIA
C3 TQQQQHSKQQQQQQQQQQQQ-QLQLKQQQQQ-----DILYQQHNEAVAIA
C4 TQQQQLSKQHQQQQQLQLKQQQQQQQQQQQQQQQQ-DILYQQHNEAIAIA
C5 TQQQQLSKQQQQQQQLQLKQ-QQQQQQQQQQ-----DILYQQHNEAIAIA
C6 QQATQQQQQQHAKQQQQQQQLKQQQHQQ--------ELLYQQHNEAIAIA
C7 TQQQQQQLSRQQQQQQQQQQQQQQQQQLQHKQQQ--DILYQQHNEAIAIA
C8 TQQQQQQLTRQQQQLQQQQHKQQQQ-----------DILYQQQNEAIAIA
* * . :: :* * :: : : ::****:***:***
C1 RGLQAATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAG
C2 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG
C3 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSIPAAG
C4 RGLQAATPADLGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAG
C5 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG
C6 RGLQAATPADVGDNQPYYDTSGNVDWERAMGAGGAGAYGGVGIGSLPAGG
C7 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG
C8 RGLQAATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGLGIGSLPAAG
**********:********************:********:****:**.*
C1 GAAYHLGPANPAGLVSRHLDYGDGGHLAGPSAGLPAGAV-GSGAGAGAG-
C2 GAAYHLGPANTAGLVSRHLDYADGGHLAGPSAGLPAGAV-GSGAGAGTG-
C3 GAAYHLGPANPAGLVSRHLDYTDGGHLAGPSAGLPAGAV-GSGAGAGAGT
C4 GAAYHLGPANPAGLVSRHLDYADGGHLAGPSAGLPLAAVPGSGAVSAAVS
C5 GAPYHLGPANPAGLVSRHMDYADGGHLAGPSAGLPAGAV-GAGTGSGLVS
C6 GAAYHLGPANAAGLVPRHLDYADGGHLAGPSAGLSAGALAAGAGTAAVGG
C7 GAAYHLGPANPAGLVPRHMDYADGGHLAGPSAGLPAGGVGGPAVTGSGST
C8 HVAYHLGPANAPGLAARHLDYADGGHLAGPSAGVSVG-SGAVSITGSGSG
..*******..**..**:** ***********:. . . . ..
C1 ---AGASVTGSGSG-------AGTGTGTGAGSGSGSGAAGKEVRYAPFPV
C2 -ASAGASVTGSGAGAGSGATGTGTGTGTGAGSGSGGGAAGKEVRYAPFPV
C3 GAGAGASVTGSGSGS-----GAGPGTGTGAGSGSGSGAAGKEVRYAPFPV
C4 --GAGSGGAGSG----------GAGAGAGAVTGSGPAAAGKEVRYAPFPV
C5 ---GGSAVAG-------------PGAGSGAGTGSAGGAAGKEVRYAPFPV
C6 ----------------------AAGAPGGAGQG-GTAAGSKEVRYAPFPV
C7 ----------------------GAG--AGAGTGPGAGAAGKEVRYAPFPV
C8 -------------------GAIGAGGAAGAAGAAGATAAGKEVRYAPFPV
.* ** . . *..**********
C1 ASPTHSIPTTSQQIVG--SVGGVGVGG--ASSQSISGG------VPTH-S
C2 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S
C3 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S
C4 ASPTHSIPTTSQQIVG--SVGGGGVGGGGGGSQSISGG------GPTH-S
C5 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S
C6 ASPTHSIPTTSNQQLGGSVVGGGGVGG--ASSQSISGG------VPTAHS
C7 ASPTHSIPTTSQQIVG--SVGGGGVGG-ATSSQSISGGGGGG--VPTNHS
C8 ASPTHSIPTTSQQIVG--SVGGGGVGG-ATSSQSISGGGGGGGGAPTNPS
***********:* :* *** **** .******* ** *
C1 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C2 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C3 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C4 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C5 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C6 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C7 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW
C8 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAANSRVSINVGGVRHEVLW
********************************.*****************
C1 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C2 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C3 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C4 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C5 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C6 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C7 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
C8 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL
**************************************************
C1 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C2 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C3 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C4 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C5 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C6 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C7 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
C8 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE
**************************************************
C1 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C2 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C3 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C4 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C5 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C6 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C7 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
C8 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI
**************************************************
C1 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C2 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C3 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C4 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C5 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C6 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C7 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
C8 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR
**************************************************
C1 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C2 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C3 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C4 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C5 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C6 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C7 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
C8 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV
**************************************************
C1 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C2 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C3 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C4 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C5 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C6 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C7 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
C8 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS
**************************************************
C1 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C2 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C3 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C4 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C5 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C6 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C7 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
C8 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV
**************************************************
C1 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C2 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C3 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C4 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C5 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C6 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C7 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
C8 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV
**************************************************
C1 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
C2 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
C3 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSSTPNIGRQTLD
C4 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGR--LD
C5 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
C6 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
C7 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
C8 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD
*************************************** ****** **
C1 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C2 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C3 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C4 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C5 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C6 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C7 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
C8 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH
**************************************************
C1 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLQQQQQQQQQ
C2 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ
C3 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ
C4 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALQLQQQQQQQQ
C5 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ
C6 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQ-
C7 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQ-
C8 HRRGSSSEQDAVPPYNFDNPNARQTSMMAMESYRREQQALLLQQQQQQQK
:**************.************************ *******
C1 -------MLQMQQIQQKAPNGNGGATGGG-VANNLAMVAASSAATAVATA
C2 Q------MLQMQQIQQKAPNGNGGATGGGGVANNLAMVAASSAATAVATA
C3 QQQ----MLQMQQTQQKAPNGNGGATGGG-VANNLAMVAASSAATAVATA
C4 QQQ----MLQMQQIQQKAPNG--GGSGSG-VANNLAMVAASSAATAVATA
C5 QTQQQ--MLQMQQIQQKAPNG--GGSGSG-VANNLAMVAASSAATAVATA
C6 ------QMLQMQQIQ-KAPNG--GGAAQG-VTNNLAIMAASSAATAVATA
C7 -QQQQQQMLQMQQMQQKAPNG--GGTGSG-VANNLAMVAASSAATAVATA
C8 QQQQQQQMLQMQQMQQKAAPNG-GATGSG-VANNLAIVAASSAATAVATA
****** * **. . *.:. * *:****::************
C1 TNASNASNTAPGSEGAEGGGDGDGGG-----VDDDNLSQAKGLPIQMMIT
C2 TNASNASNTAPGTEGAEGGGDGDGGV-----VDDDNLSQAKGLPIQMMIT
C3 TNATNASNTAPGSEGAEGGGDGDGGG-----VDDDNLSQAKGLPIQMMIT
C4 TNTTNTSNTAQGSEGAEGGGGEDGGG-----VDDDNLSQAKGLPIQMMIT
C5 TNASNNSNIAPGS--AEGAEGGDGAG-----VDDDNLSQAKGLPIQMMIT
C6 S-TSNTSNTAQGSEGQGAEGGGEGAD-------EDNLSQAKGLPIQMMIT
C7 S----SSNTAQGSEGAAEGGGGEGGG-----ADEDNLSQAKGLPIQMMIT
C8 S----SSNTAPGSE-VAEGGGGDGGGGEEGVADDDNLSQAKGLPIQMMIT
: ** * *: . :*. :****************
C1 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C2 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C3 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C4 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C5 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C6 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
C7 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKoooooooooo
C8 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI
****************************************
C1 PLRANSVoooooooooooooooo-----------------
C2 PLRANSV---------------------------------
C3 PLRANSVooooooo--------------------------
C4 PLRANSVooooooooooo----------------------
C5 PLRANSVooooooooooooooooooooo------------
C6 PLRANSVooooooooooooooooooooooooooooooooo
C7 ooooooooooooooooooooooooooo-------------
C8 PLRANSVoooooooooooooooo-----------------
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [82570]
Library Relaxation: Multi_proc [72]
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [82570]
Library Relaxation: Multi_proc [72]
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_ 