--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Tue Dec 06 14:31:43 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/388/Shab-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -7881.12 -7895.26 2 -7880.89 -7894.27 -------------------------------------- TOTAL -7881.00 -7894.88 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/388/Shab-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.375781 0.000887 0.315628 0.430843 0.374301 1169.10 1335.05 1.000 r(A<->C){all} 0.148270 0.000302 0.114531 0.182140 0.147441 1183.62 1239.25 1.000 r(A<->G){all} 0.249168 0.000543 0.200649 0.291309 0.248293 859.15 1000.43 1.001 r(A<->T){all} 0.129051 0.000473 0.089464 0.172467 0.128001 962.46 1033.02 1.000 r(C<->G){all} 0.131857 0.000230 0.102287 0.160234 0.131339 867.80 1093.07 1.001 r(C<->T){all} 0.268531 0.000650 0.219370 0.320332 0.268262 690.84 904.38 1.000 r(G<->T){all} 0.073123 0.000200 0.047466 0.102670 0.072330 1239.75 1271.47 1.000 pi(A){all} 0.241719 0.000052 0.227680 0.256004 0.241696 877.87 1092.29 1.001 pi(C){all} 0.285776 0.000059 0.270798 0.300436 0.285894 1079.69 1103.22 1.000 pi(G){all} 0.295136 0.000060 0.279943 0.309773 0.295277 1166.40 1209.58 1.000 pi(T){all} 0.177369 0.000045 0.165145 0.191276 0.177087 994.36 1149.22 1.000 alpha{1,2} 0.298331 0.003850 0.188551 0.421689 0.292333 1141.77 1204.93 1.000 alpha{3} 1.861871 0.505250 0.728315 3.397125 1.746323 1055.27 1084.02 1.000 pinvar{all} 0.670345 0.001331 0.598625 0.732051 0.675009 863.66 983.58 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -6829.806418 Model 2: PositiveSelection -6813.306042 Model 0: one-ratio -7000.752864 Model 3: discrete -6812.360093 Model 7: beta -6836.195333 Model 8: beta&w>1 -6813.909092 Model 0 vs 1 341.89289199999985 Model 2 vs 1 33.00075199999992 Additional information for M1 vs M2: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Shab-PB) Pr(w>1) post mean +- SE for w 51 T 0.549 2.808 174 A 0.616 3.029 176 V 0.544 2.792 178 S 0.981* 4.231 180 A 0.842 3.774 181 G 0.722 3.377 183 G 0.712 3.343 184 A 0.945 4.113 185 G 0.870 3.865 186 T 0.613 3.019 188 T 0.670 3.207 192 S 0.980* 4.227 195 S 0.997** 4.282 196 G 0.922 4.038 247 H 0.640 3.109 857 G 0.539 2.777 862 G 0.843 3.776 890 P 0.656 3.162 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Shab-PB) Pr(w>1) post mean +- SE for w 51 T 0.833 3.037 +- 1.004 53 Q 0.504 2.151 +- 1.337 56 H 0.763 2.865 +- 1.099 57 S 0.539 2.246 +- 1.337 58 K 0.776 2.887 +- 1.101 59 Q 0.703 2.713 +- 1.170 60 Q 0.668 2.604 +- 1.242 120 A 0.833 3.039 +- 0.983 139 G 0.621 2.471 +- 1.293 149 P 0.655 2.590 +- 1.207 154 S 0.738 2.784 +- 1.180 157 L 0.518 2.191 +- 1.338 160 G 0.632 2.503 +- 1.286 173 P 0.699 2.681 +- 1.227 174 A 0.869 3.133 +- 0.908 176 V 0.853 3.090 +- 0.943 177 G 0.685 2.642 +- 1.244 178 S 0.991** 3.430 +- 0.457 179 G 0.696 2.673 +- 1.231 180 A 0.949 3.329 +- 0.663 181 G 0.906 3.224 +- 0.810 182 A 0.613 2.451 +- 1.299 183 G 0.901 3.213 +- 0.824 184 A 0.980* 3.403 +- 0.522 185 G 0.952* 3.337 +- 0.651 186 T 0.869 3.132 +- 0.908 188 T 0.889 3.183 +- 0.857 191 G 0.693 2.665 +- 1.236 192 S 0.991** 3.428 +- 0.460 195 S 0.998** 3.444 +- 0.415 196 G 0.971* 3.382 +- 0.567 244 V 0.565 2.320 +- 1.326 247 H 0.883 3.166 +- 0.873 857 G 0.833 3.036 +- 1.001 859 A 0.667 2.595 +- 1.258 862 G 0.950* 3.331 +- 0.658 885 A 0.744 2.816 +- 1.125 890 P 0.895 3.194 +- 0.842 893 A 0.824 3.015 +- 1.001 895 G 0.696 2.677 +- 1.220 903 G 0.500 2.161 +- 1.306 Model 8 vs 7 44.57248199999958 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Shab-PB) Pr(w>1) post mean +- SE for w 51 T 0.675 2.710 56 H 0.557 2.412 58 K 0.586 2.486 120 A 0.662 2.677 154 S 0.547 2.387 174 A 0.726 2.840 176 V 0.696 2.764 178 S 0.981* 3.487 180 A 0.885 3.242 181 G 0.796 3.016 183 G 0.787 2.995 184 A 0.955* 3.421 185 G 0.894 3.266 186 T 0.725 2.839 188 T 0.763 2.935 192 S 0.980* 3.484 195 S 0.996** 3.523 196 G 0.935 3.370 247 H 0.751 2.902 857 G 0.671 2.700 862 G 0.887 3.249 885 A 0.531 2.346 890 P 0.773 2.960 893 A 0.646 2.637 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Shab-PB) Pr(w>1) post mean +- SE for w 51 T 0.924 3.072 +- 0.843 53 Q 0.633 2.223 +- 1.414 54 Q 0.577 2.062 +- 1.432 56 H 0.913 3.043 +- 0.865 57 S 0.661 2.307 +- 1.394 58 K 0.904 3.013 +- 0.913 59 Q 0.874 2.936 +- 0.984 60 Q 0.807 2.737 +- 1.174 66 Q 0.602 2.135 +- 1.438 73 K 0.501 1.833 +- 1.461 120 A 0.953* 3.152 +- 0.707 139 G 0.749 2.565 +- 1.285 149 P 0.847 2.857 +- 1.054 154 S 0.844 2.841 +- 1.100 157 L 0.643 2.255 +- 1.407 160 G 0.758 2.593 +- 1.271 173 P 0.815 2.757 +- 1.166 174 A 0.956* 3.163 +- 0.694 176 V 0.956* 3.163 +- 0.691 177 G 0.800 2.715 +- 1.197 178 S 0.999** 3.275 +- 0.444 179 G 0.811 2.746 +- 1.175 180 A 0.989* 3.251 +- 0.508 181 G 0.971* 3.201 +- 0.622 182 A 0.742 2.544 +- 1.297 183 G 0.969* 3.196 +- 0.633 184 A 0.997** 3.270 +- 0.457 185 G 0.987* 3.245 +- 0.525 186 T 0.956* 3.163 +- 0.693 188 T 0.965* 3.185 +- 0.654 191 G 0.806 2.733 +- 1.186 192 S 0.999** 3.274 +- 0.445 195 S 1.000** 3.277 +- 0.438 196 G 0.994** 3.264 +- 0.476 223 I 0.705 2.448 +- 1.306 244 V 0.691 2.396 +- 1.362 247 H 0.967* 3.191 +- 0.640 851 I 0.593 2.106 +- 1.434 857 G 0.928 3.082 +- 0.826 859 A 0.788 2.680 +- 1.219 862 G 0.990* 3.252 +- 0.505 885 A 0.898 3.002 +- 0.914 890 P 0.970* 3.200 +- 0.622 893 A 0.950* 3.145 +- 0.716 894 E 0.634 2.238 +- 1.379 895 G 0.824 2.784 +- 1.141 896 G 0.637 2.238 +- 1.404 903 G 0.663 2.317 +- 1.373
>C1 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA TQQQQHSKQQQQQQQQQQQQLQLKQHQQQQQDILYQQHNEAIAIARGLQA ATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAGGAAYH LGPANPAGLVSRHLDYGDGGHLAGPSAGLPAGAVGSGAGAGAGAGASVTG SGSGAGTGTGTGAGSGSGSGAAGKEVRYAPFPVASPTHSIPTTSQQIVGS VGGVGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIA QSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCD DYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGV DELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKY LWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQD NPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFV SLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTL RNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGIT MTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQM RREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQT NVVHPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPAT TGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMA MESYRREQQALLQQQQQQQQQMLQMQQIQQKAPNGNGGATGGGVANNLAM VAASSAATAVATATNASNASNTAPGSEGAEGGGDGDGGGVDDDNLSQAKG LPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGL PGCHGECIPLRANSVoooooooooooooooo >C2 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA TQQQQLSKQQQQQQQHQQQQLQLKQQQQQQQQQQQQDILYQQHNEAIAIA RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG GAAYHLGPANTAGLVSRHLDYADGGHLAGPSAGLPAGAVGSGAGAGTGAS AGASVTGSGAGAGSGATGTGTGTGTGAGSGSGGGAAGKEVRYAPFPVASP THSIPTTSQQIVGSVGGGGVGGASSQSISGGVPTHSQSNTTGALQRTHSR SMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRL RECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEM CVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDE EEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNT LPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGG LNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKL ARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTK FVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIP IIVNNFAEFYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKS MDLIDVIVDTGKQTNVVHPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGN STEGESTSGRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPY SFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQQMLQMQQIQQKAPNG NGGATGGGGVANNLAMVAASSAATAVATATNASNASNTAPGTEGAEGGGD GDGGVVDDDNLSQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQ DVPVEFECCFCTTKGLPGCHGECIPLRANSV >C3 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA TQQQQHSKQQQQQQQQQQQQQLQLKQQQQQDILYQQHNEAVAIARGLQAA TPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSIPAAGGAAYHL GPANPAGLVSRHLDYTDGGHLAGPSAGLPAGAVGSGAGAGAGTGAGAGAS VTGSGSGSGAGPGTGTGAGSGSGSGAAGKEVRYAPFPVASPTHSIPTTSQ QIVGSVGGGGVGGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPE PFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAI VELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDL EYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCA EYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDN GTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAI LPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQS LGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFW WAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEF YKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVD TGKQTNVVHPKGKRQSSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTS GRNPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNAR QTSMMAMESYRREQQALLLQQQQQQQQQQQMLQMQQTQQKAPNGNGGATG GGVANNLAMVAASSAATAVATATNATNASNTAPGSEGAEGGGDGDGGGVD DDNLSQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFE CCFCTTKGLPGCHGECIPLRANSVooooooo >C4 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA TQQQQLSKQHQQQQQLQLKQQQQQQQQQQQQQQQQDILYQQHNEAIAIAR GLQAATPADLGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAGG AAYHLGPANPAGLVSRHLDYADGGHLAGPSAGLPLAAVPGSGAVSAAVSG AGSGGAGSGGAGAGAGAVTGSGPAAAGKEVRYAPFPVASPTHSIPTTSQQ IVGSVGGGGVGGGGGGSQSISGGGPTHSQSNTTGALQRTHSRSMSSIPPP EPFMIAQSKAVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEA IVELCDDYSLADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDD LEYWGVDELYLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKC AEYQKYLWELLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHID NGTPQDNPQLAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLA ILPYFVSLFLLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQ SLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETF WWAGITMTTVGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAE FYKNQMRREKALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIV DTGKQTNVVHPKGKRQSTPNIGRLDVQSAPGHNLSQTDGNSTEGESTSGR NPATTGTGCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQT SMMAMESYRREQQALQLQQQQQQQQQQQMLQMQQIQQKAPNGGGSGSGVA NNLAMVAASSAATAVATATNTTNTSNTAQGSEGAEGGGGEDGGGVDDDNL SQAKGLPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFC TTKGLPGCHGECIPLRANSVooooooooooo >C5 MVGERDRDREAVRWATGELTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA TQQQQLSKQQQQQQQLQLKQQQQQQQQQQQDILYQQHNEAIAIARGLQAA TPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAGGAPYHL GPANPAGLVSRHMDYADGGHLAGPSAGLPAGAVGAGTGSGLVSGGSAVAG PGAGSGAGTGSAGGAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGV GGASSQSISGGVPTHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVN SRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLAD NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLE SCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLE KPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAM VEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLE TNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE LGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGY GDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKAL KRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPK GKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCY KNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRR EQQALLLQQQQQQQQQTQQQMLQMQQIQQKAPNGGGSGSGVANNLAMVAA SSAATAVATATNASNNSNIAPGSAEGAEGGDGAGVDDDNLSQAKGLPIQM MITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHG ECIPLRANSVooooooooooooooooooooo >C6 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQQ QQATQQQQQQHAKQQQQQQQLKQQQHQQELLYQQHNEAIAIARGLQAATP ADVGDNQPYYDTSGNVDWERAMGAGGAGAYGGVGIGSLPAGGGAAYHLGP ANAAGLVPRHLDYADGGHLAGPSAGLSAGALAAGAGTAAVGGAAGAPGGA GQGGTAAGSKEVRYAPFPVASPTHSIPTTSNQQLGGSVVGGGGVGGASSQ SISGGVPTAHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSI NVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFF DRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQH KYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTS FAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVC ITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNA TDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLM LFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYP TTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA LDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS TPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDH VANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQAL LLQQQQQQQQMLQMQQIQKAPNGGGAAQGVTNNLAIMAASSAATAVATAS TSNTSNTAQGSEGQGAEGGGEGADEDNLSQAKGLPIQMMITPGEVAELRR QVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECIPLRANSVoo ooooooooooooooooooooooooooooooo >C7 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA TQQQQQQLSRQQQQQQQQQQQQQQQQQLQHKQQQDILYQQHNEAIAIARG LQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAGGA AYHLGPANPAGLVPRHMDYADGGHLAGPSAGLPAGGVGGPAVTGSGSTGA GAGAGTGPGAGAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGVGGA TSSQSISGGGGGGVPTNHSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSK AVNSRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYS LADNEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDEL YLESCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWE LLEKPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQ LAMVEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLF LLETNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNS YKELGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTT VGYGDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRRE KALKRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVV HPKGKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGT GCYKNYDHVANLRNSNLHNRRGSSSEQDAVPPYSFDNPNARQTSMMAMES YRREQQALLLQQQQQQQQQQQQQMLQMQQMQQKAPNGGGTGSGVANNLAM VAASSAATAVATASSSNTAQGSEGAAEGGGGEGGGADEDNLSQAKGLPIQ MMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKoooooo ooooooooooooooooooooooooooooooo >C8 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA TQQQQQQLTRQQQQLQQQQHKQQQQDILYQQQNEAIAIARGLQAATPADI GDNQPYYDTSGNVDWERAMGAGGAGAYGGLGIGSLPAAGHVAYHLGPANA PGLAARHLDYADGGHLAGPSAGVSVGSGAVSITGSGSGGAIGAGGAAGAA GAAGATAAGKEVRYAPFPVASPTHSIPTTSQQIVGSVGGGGVGGATSSQS ISGGGGGGGGAPTNPSQSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAAN SRVSINVGGVRHEVLWRTLERLPHTRLGRLRECTTHEAIVELCDDYSLAD NEYFFDRHPKSFSSILNFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLE SCCQHKYHQRKENVHEEMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLE KPNTSFAARVIAVISILFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAM VEAVCITWFTLEYILRFSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLE TNKNATDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKE LGLLMLFLAMGVLIFSSLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGY GDIYPTTALGKVIGTVCCICGVLVIALPIPIIVNNFAEFYKNQMRREKAL KRREALDRAKREGSIVSFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPK GKRQSTPNIGRQTLDVQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCY KNYDHVANLRNSNLHHRRGSSSEQDAVPPYNFDNPNARQTSMMAMESYRR EQQALLLQQQQQQQKQQQQQQQMLQMQQMQQKAAPNGGATGSGVANNLAI VAASSAATAVATASSSNTAPGSEVAEGGGGDGGGGEEGVADDDNLSQAKG LPIQMMITPGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGL PGCHGECIPLRANSVoooooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=8, Len=1090 C1 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA C2 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA C3 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQCGQAAGQQQQQQQA C4 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA C5 MVGERDRDREAVRWATGELTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA C6 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQQ C7 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA C8 MVGERDRDREAVRWATGESTPLQTNNGVLQMVGQLQGGQAAGQQQQQQQA ****************** ***************** ************ C1 TQQQQHSKQQQQQQQQQQQQLQLKQHQQQQQ-----DILYQQHNEAIAIA C2 TQQQQLSKQQQQQQQHQQQQLQLKQQQQQQQQQQQQDILYQQHNEAIAIA C3 TQQQQHSKQQQQQQQQQQQQ-QLQLKQQQQQ-----DILYQQHNEAVAIA C4 TQQQQLSKQHQQQQQLQLKQQQQQQQQQQQQQQQQ-DILYQQHNEAIAIA C5 TQQQQLSKQQQQQQQLQLKQ-QQQQQQQQQQ-----DILYQQHNEAIAIA C6 QQATQQQQQQHAKQQQQQQQLKQQQHQQ--------ELLYQQHNEAIAIA C7 TQQQQQQLSRQQQQQQQQQQQQQQQQQLQHKQQQ--DILYQQHNEAIAIA C8 TQQQQQQLTRQQQQLQQQQHKQQQQ-----------DILYQQQNEAIAIA * * . :: :* * :: : : ::****:***:*** C1 RGLQAATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAG C2 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG C3 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSIPAAG C4 RGLQAATPADLGDNQPYYDTSGNVDWERAMGAGGAGAYGGIGIGSLPAAG C5 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG C6 RGLQAATPADVGDNQPYYDTSGNVDWERAMGAGGAGAYGGVGIGSLPAGG C7 RGLQAATPADIGDNQPYYDTSGNVDWERAMGTGGAGAYGGIGIGSLPAAG C8 RGLQAATPADIGDNQPYYDTSGNVDWERAMGAGGAGAYGGLGIGSLPAAG **********:********************:********:****:**.* C1 GAAYHLGPANPAGLVSRHLDYGDGGHLAGPSAGLPAGAV-GSGAGAGAG- C2 GAAYHLGPANTAGLVSRHLDYADGGHLAGPSAGLPAGAV-GSGAGAGTG- C3 GAAYHLGPANPAGLVSRHLDYTDGGHLAGPSAGLPAGAV-GSGAGAGAGT C4 GAAYHLGPANPAGLVSRHLDYADGGHLAGPSAGLPLAAVPGSGAVSAAVS C5 GAPYHLGPANPAGLVSRHMDYADGGHLAGPSAGLPAGAV-GAGTGSGLVS C6 GAAYHLGPANAAGLVPRHLDYADGGHLAGPSAGLSAGALAAGAGTAAVGG C7 GAAYHLGPANPAGLVPRHMDYADGGHLAGPSAGLPAGGVGGPAVTGSGST C8 HVAYHLGPANAPGLAARHLDYADGGHLAGPSAGVSVG-SGAVSITGSGSG ..*******..**..**:** ***********:. . . . .. C1 ---AGASVTGSGSG-------AGTGTGTGAGSGSGSGAAGKEVRYAPFPV C2 -ASAGASVTGSGAGAGSGATGTGTGTGTGAGSGSGGGAAGKEVRYAPFPV C3 GAGAGASVTGSGSGS-----GAGPGTGTGAGSGSGSGAAGKEVRYAPFPV C4 --GAGSGGAGSG----------GAGAGAGAVTGSGPAAAGKEVRYAPFPV C5 ---GGSAVAG-------------PGAGSGAGTGSAGGAAGKEVRYAPFPV C6 ----------------------AAGAPGGAGQG-GTAAGSKEVRYAPFPV C7 ----------------------GAG--AGAGTGPGAGAAGKEVRYAPFPV C8 -------------------GAIGAGGAAGAAGAAGATAAGKEVRYAPFPV .* ** . . *..********** C1 ASPTHSIPTTSQQIVG--SVGGVGVGG--ASSQSISGG------VPTH-S C2 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S C3 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S C4 ASPTHSIPTTSQQIVG--SVGGGGVGGGGGGSQSISGG------GPTH-S C5 ASPTHSIPTTSQQIVG--SVGGGGVGG--ASSQSISGG------VPTH-S C6 ASPTHSIPTTSNQQLGGSVVGGGGVGG--ASSQSISGG------VPTAHS C7 ASPTHSIPTTSQQIVG--SVGGGGVGG-ATSSQSISGGGGGG--VPTNHS C8 ASPTHSIPTTSQQIVG--SVGGGGVGG-ATSSQSISGGGGGGGGAPTNPS ***********:* :* *** **** .******* ** * C1 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C2 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C3 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C4 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C5 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C6 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C7 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAVNSRVSINVGGVRHEVLW C8 QSNTTGALQRTHSRSMSSIPPPEPFMIAQSKAANSRVSINVGGVRHEVLW ********************************.***************** C1 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C2 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C3 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C4 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C5 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C6 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C7 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL C8 RTLERLPHTRLGRLRECTTHEAIVELCDDYSLADNEYFFDRHPKSFSSIL ************************************************** C1 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C2 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C3 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C4 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C5 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C6 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C7 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE C8 NFYRTGKLHIVDEMCVLAFSDDLEYWGVDELYLESCCQHKYHQRKENVHE ************************************************** C1 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C2 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C3 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C4 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C5 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C6 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C7 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI C8 EMRKEAESLRQRDEEEFGEGKCAEYQKYLWELLEKPNTSFAARVIAVISI ************************************************** C1 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C2 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C3 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C4 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C5 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C6 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C7 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR C8 LFIVLSTIALTLNTLPQLQHIDNGTPQDNPQLAMVEAVCITWFTLEYILR ************************************************** C1 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C2 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C3 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C4 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C5 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C6 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C7 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV C8 FSASPDKWKFFKGGLNIIDLLAILPYFVSLFLLETNKNATDQFQDVRRVV ************************************************** C1 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C2 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C3 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C4 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C5 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C6 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C7 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS C8 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS ************************************************** C1 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C2 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C3 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C4 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C5 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C6 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C7 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV C8 SLAYFAEKDEKDTKFVSIPETFWWAGITMTTVGYGDIYPTTALGKVIGTV ************************************************** C1 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C2 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C3 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C4 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C5 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C6 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C7 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV C8 CCICGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREALDRAKREGSIV ************************************************** C1 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD C2 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD C3 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQSSTPNIGRQTLD C4 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGR--LD C5 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD C6 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD C7 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD C8 SFHHINLKDAFAKSMDLIDVIVDTGKQTNVVHPKGKRQS-TPNIGRQTLD *************************************** ****** ** C1 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C2 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C3 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C4 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C5 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C6 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C7 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH C8 VQSAPGHNLSQTDGNSTEGESTSGRNPATTGTGCYKNYDHVANLRNSNLH ************************************************** C1 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLQQQQQQQQQ C2 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ C3 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ C4 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALQLQQQQQQQQ C5 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQQ C6 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQ- C7 NRRGSSSEQDAVPPYSFDNPNARQTSMMAMESYRREQQALLLQQQQQQQ- C8 HRRGSSSEQDAVPPYNFDNPNARQTSMMAMESYRREQQALLLQQQQQQQK :**************.************************ ******* C1 -------MLQMQQIQQKAPNGNGGATGGG-VANNLAMVAASSAATAVATA C2 Q------MLQMQQIQQKAPNGNGGATGGGGVANNLAMVAASSAATAVATA C3 QQQ----MLQMQQTQQKAPNGNGGATGGG-VANNLAMVAASSAATAVATA C4 QQQ----MLQMQQIQQKAPNG--GGSGSG-VANNLAMVAASSAATAVATA C5 QTQQQ--MLQMQQIQQKAPNG--GGSGSG-VANNLAMVAASSAATAVATA C6 ------QMLQMQQIQ-KAPNG--GGAAQG-VTNNLAIMAASSAATAVATA C7 -QQQQQQMLQMQQMQQKAPNG--GGTGSG-VANNLAMVAASSAATAVATA C8 QQQQQQQMLQMQQMQQKAAPNG-GATGSG-VANNLAIVAASSAATAVATA ****** * **. . *.:. * *:****::************ C1 TNASNASNTAPGSEGAEGGGDGDGGG-----VDDDNLSQAKGLPIQMMIT C2 TNASNASNTAPGTEGAEGGGDGDGGV-----VDDDNLSQAKGLPIQMMIT C3 TNATNASNTAPGSEGAEGGGDGDGGG-----VDDDNLSQAKGLPIQMMIT C4 TNTTNTSNTAQGSEGAEGGGGEDGGG-----VDDDNLSQAKGLPIQMMIT C5 TNASNNSNIAPGS--AEGAEGGDGAG-----VDDDNLSQAKGLPIQMMIT C6 S-TSNTSNTAQGSEGQGAEGGGEGAD-------EDNLSQAKGLPIQMMIT C7 S----SSNTAQGSEGAAEGGGGEGGG-----ADEDNLSQAKGLPIQMMIT C8 S----SSNTAPGSE-VAEGGGGDGGGGEEGVADDDNLSQAKGLPIQMMIT : ** * *: . :*. :**************** C1 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C2 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C3 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C4 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C5 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C6 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI C7 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKoooooooooo C8 PGEVAELRRQVALENLQNQRMDNLEQDVPVEFECCFCTTKGLPGCHGECI **************************************** C1 PLRANSVoooooooooooooooo----------------- C2 PLRANSV--------------------------------- C3 PLRANSVooooooo-------------------------- C4 PLRANSVooooooooooo---------------------- C5 PLRANSVooooooooooooooooooooo------------ C6 PLRANSVooooooooooooooooooooooooooooooooo C7 ooooooooooooooooooooooooooo------------- C8 PLRANSVoooooooooooooooo----------------- PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [82570] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1031 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [82570] Library Relaxation: Multi_proc [72] gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1031 type PROTEIN Struct Unchecked Input File /opt/ADOPS/388/Shab-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_