--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Mon Dec 05 09:46:42 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/373/RPA2-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -2809.02 -2825.15
2 -2809.21 -2825.99
--------------------------------------
TOTAL -2809.11 -2825.65
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/373/RPA2-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.210236 0.010595 1.024679 1.420749 1.204523 1414.33 1457.67 1.000
r(A<->C){all} 0.110637 0.000407 0.072182 0.150517 0.109336 1146.84 1158.78 1.000
r(A<->G){all} 0.324980 0.001435 0.252437 0.398673 0.324466 764.44 876.09 1.000
r(A<->T){all} 0.073032 0.000427 0.034133 0.113933 0.071607 887.25 910.94 1.000
r(C<->G){all} 0.078661 0.000245 0.049255 0.109580 0.077504 1226.96 1235.74 1.000
r(C<->T){all} 0.344704 0.001333 0.277671 0.419486 0.344619 749.67 823.51 1.000
r(G<->T){all} 0.067986 0.000277 0.037146 0.100768 0.067005 1224.15 1260.00 1.001
pi(A){all} 0.234624 0.000212 0.205474 0.261198 0.233830 1009.49 1022.78 1.000
pi(C){all} 0.270069 0.000215 0.241585 0.298633 0.269992 1286.83 1291.67 1.000
pi(G){all} 0.281567 0.000219 0.254645 0.311200 0.281372 993.00 1160.08 1.000
pi(T){all} 0.213740 0.000182 0.187366 0.239303 0.213989 1044.51 1204.94 1.000
alpha{1,2} 0.129868 0.000227 0.100792 0.158588 0.128959 1425.12 1463.06 1.000
alpha{3} 3.466050 0.902013 1.786479 5.238749 3.344522 1078.06 1289.53 1.001
pinvar{all} 0.247450 0.002605 0.148051 0.350267 0.248377 1266.75 1287.19 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -2625.435695
Model 2: PositiveSelection -2625.435695
Model 0: one-ratio -2640.459092
Model 3: discrete -2616.379039
Model 7: beta -2617.179514
Model 8: beta&w>1 -2616.826104
Model 0 vs 1 30.046793999999863
Model 2 vs 1 0.0
Model 8 vs 7 0.7068199999994249
>C1
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM
>C2
MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
EGISRKQLKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM
>C3
MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM
>C4
MNDSFGDFNATQTAPSGAASSQKGEGIAPLVVKQIVDAPEGNIEMFGMQY
AMACVVAIVRNIETSSTKITYALEDHSGRIDAHYWLEEGDALKAPEVMIN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKINVSEEG
ISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
>C5
MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEALNARYRAEDYQ
SKGGAGGGAGASSGSGPIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM
>C6
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVIKQVVDAPEGNIELFGMQY
AMVCVVGIVRNVETSSTKITYTVEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEVLNARYRAEDYK
NKGGSGAVASSGSGSIADFTTSQSSAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
>C7
MNDSFGDFNATQTAPAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
AMACVVGIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
NKGGSGAVASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
>C8
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVGIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQAGQKTLMVFKLLPILDPNEVCTHLLEVLNARYRAEDYQ
SKGGSGAGASSGGGSISDFTASQSTAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
>C9
MNDSFGDFNATQTATAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
AMACVVAIVRNIETSSTKITYTLEDHSGRMDAHYWLEEGDALKAPEVMLN
NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEALNARYRAEDYQ
NKGGSSGVAPSGTGSISDFTASQSSAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNIVDFMISEGHIYSSIDADHFICTMoo
>C10
MNDSFGDFNAIQTATAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
AMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMLN
NYVKVYGTTRSQAGQKTLMVFKLLPILDPNEVCTHLLEALNARYRAEDYQ
NKGGSSAVAPSGSGSISDFTASQSSAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNIVDFMISEGHIYSSIDADHFICTMoo
>C11
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIEMFGMQY
GMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMLN
NYVKVYGTTRSQAGQKTLMVFKLLPVLDPNELCTHLLEVLNARYRAEDYQ
NKGGSGAVASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSEEG
ISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=11, Len=248
C1 MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
C2 MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
C3 MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
C4 MNDSFGDFNATQTAPSGAASSQKGEGIAPLVVKQIVDAPEGNIEMFGMQY
C5 MNDSFGDFNATQTAPAGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
C6 MNDSFGDFNATQTAPTGAASNQKGEGIVPLVIKQVVDAPEGNIELFGMQY
C7 MNDSFGDFNATQTAPAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
C8 MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
C9 MNDSFGDFNATQTATAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
C10 MNDSFGDFNAIQTATAGAASNQKGEGIVPLVIKQIVDAPEGNIELFGMQY
C11 MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIEMFGMQY
********** ***.:****.******.***:**:*********:*****
C1 AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C2 AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C3 AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C4 AMACVVAIVRNIETSSTKITYALEDHSGRIDAHYWLEEGDALKAPEVMIN
C5 AMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C6 AMVCVVGIVRNVETSSTKITYTVEDHSGRIDAHYWLEEGDALKAPEVMVN
C7 AMACVVGIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C8 AMACVVGIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
C9 AMACVVAIVRNIETSSTKITYTLEDHSGRMDAHYWLEEGDALKAPEVMLN
C10 AMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMLN
C11 GMACVVAIVRNIETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMLN
.*.***.****:*********::******:******************:*
C1 NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
C2 NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
C3 NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
C4 NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
C5 NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEALNARYRAEDYQ
C6 NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEVLNARYRAEDYK
C7 NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
C8 NYVKVYGTTRSQAGQKTLMVFKLLPILDPNEVCTHLLEVLNARYRAEDYQ
C9 NYVKVYGTTRSQGGQKTLMVFKLLPVLDPNEVCTHLLEALNARYRAEDYQ
C10 NYVKVYGTTRSQAGQKTLMVFKLLPILDPNEVCTHLLEALNARYRAEDYQ
C11 NYVKVYGTTRSQAGQKTLMVFKLLPVLDPNELCTHLLEVLNARYRAEDYQ
************.*.****:*****:*****:******.**********:
C1 SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
C2 SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
C3 SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
C4 SKGGAG--AGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKINVSE
C5 SKGGAGGGAGASSGSGPIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
C6 NKGGSG--AVASSGSGSIADFTTSQSSAIVSGLDPKQQAVFQAIKSNVSE
C7 NKGGSG--AVASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
C8 SKGGSG--AGASSGGGSISDFTASQSTAIVSGLDPKQQAVFQAIKSNVSE
C9 NKGGSS--GVAPSGTGSISDFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
C10 NKGGSS--AVAPSGSGSISDFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
C11 NKGGSG--AVASSGSGSIADFTASQSSAIVSGLDPKQQAVFQAIKSNVSE
.***:. . *.** *.*:***:***:******:*********** ****
C1 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM--
C2 EGISRKQLKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM--
C3 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM--
C4 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
C5 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM--
C6 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
C7 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
C8 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
C9 EGISRKELKAKFSHISDSELTNIVDFMISEGHIYSSIDADHFICTMoo
C10 EGISRKELKAKFSHISDSELTNIVDFMISEGHIYSSIDADHFICTMoo
C11 EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTMoo
******:****************:**********************
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
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-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 11 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C11 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 246 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 246 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/373/RPA2-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy 