--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Sat Nov 26 00:18:42 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/340/para-PQ/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -12232.79 -12244.54
2 -12232.91 -12243.96
--------------------------------------
TOTAL -12232.85 -12244.29
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/340/para-PQ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.218343 0.000233 0.189046 0.249183 0.217796 1286.74 1314.80 1.000
r(A<->C){all} 0.070906 0.000160 0.046220 0.094535 0.070159 1061.13 1087.53 1.000
r(A<->G){all} 0.248006 0.000587 0.202005 0.296799 0.247009 686.43 879.18 1.001
r(A<->T){all} 0.077002 0.000262 0.046227 0.108599 0.075913 592.86 775.22 1.000
r(C<->G){all} 0.082729 0.000141 0.059900 0.105966 0.082307 957.95 987.83 1.000
r(C<->T){all} 0.461834 0.000866 0.403782 0.518807 0.461556 737.60 908.26 1.001
r(G<->T){all} 0.059523 0.000145 0.035777 0.082322 0.059040 986.85 1054.84 1.000
pi(A){all} 0.254476 0.000029 0.243823 0.264482 0.254333 965.72 1019.16 1.000
pi(C){all} 0.240947 0.000029 0.230995 0.251630 0.240892 1004.98 1034.10 1.000
pi(G){all} 0.266479 0.000030 0.256128 0.277016 0.266468 675.07 804.89 1.000
pi(T){all} 0.238098 0.000029 0.228083 0.248836 0.238095 819.31 1037.63 1.000
alpha{1,2} 0.075453 0.000850 0.008537 0.118883 0.082007 1025.23 1103.36 1.000
alpha{3} 4.577110 1.207617 2.652216 6.844345 4.445158 1300.73 1400.86 1.000
pinvar{all} 0.781085 0.000203 0.754391 0.809380 0.781194 964.53 1083.08 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -11542.18255
Model 2: PositiveSelection -11533.377875
Model 0: one-ratio -11655.814139
Model 3: discrete -11533.359362
Model 7: beta -11561.442181
Model 8: beta&w>1 -11533.726181
Model 0 vs 1 227.26317800000106
Model 2 vs 1 17.609349999998813
Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_para-PQ)
Pr(w>1) post mean +- SE for w
1951 E 0.785 3.329
1962 H 0.976* 3.896
1971 G 0.795 3.360
1977 E 0.905 3.687
1978 A 0.907 3.691
1979 T 0.621 2.843
1983 P 0.678 3.012
1987 S 0.886 3.630
2021 A 0.621 2.843
2023 A 0.912 3.706
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_para-PQ)
Pr(w>1) post mean +- SE for w
326 S 0.561 1.643 +- 0.870
838 M 0.702 1.898 +- 0.805
1951 E 0.846 2.107 +- 0.766
1960 T 0.643 1.792 +- 0.872
1962 H 0.929 2.205 +- 0.713
1965 G 0.558 1.638 +- 0.870
1971 G 0.825 2.086 +- 0.780
1972 D 0.524 1.575 +- 0.869
1974 A 0.604 1.722 +- 0.874
1976 D 0.564 1.648 +- 0.872
1977 E 0.883 2.156 +- 0.745
1978 A 0.884 2.157 +- 0.745
1979 T 0.758 1.985 +- 0.824
1980 D 0.650 1.805 +- 0.877
1981 D 0.697 1.886 +- 0.836
1983 P 0.783 2.022 +- 0.810
1984 A 0.644 1.794 +- 0.875
1985 G 0.655 1.814 +- 0.871
1987 S 0.876 2.147 +- 0.750
1993 E 0.590 1.697 +- 0.873
2007 G 0.664 1.829 +- 0.869
2019 A 0.629 1.768 +- 0.877
2020 A 0.628 1.766 +- 0.877
2021 A 0.780 2.020 +- 0.796
2023 A 0.885 2.159 +- 0.744
Model 8 vs 7 55.4320000000007
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_para-PQ)
Pr(w>1) post mean +- SE for w
112 V 0.606 1.560
135 M 0.621 1.597
324 R 0.588 1.517
326 S 0.954* 2.408
775 F 0.545 1.413
838 M 0.997** 2.513
1951 E 1.000** 2.520
1954 G 0.797 2.026
1960 T 0.974* 2.458
1962 H 1.000** 2.520
1965 G 0.953* 2.405
1966 G 0.508 1.322
1971 G 0.999** 2.519
1972 D 0.939 2.372
1974 A 0.966* 2.437
1975 P 0.567 1.466
1976 D 0.954* 2.409
1977 E 1.000** 2.520
1978 A 1.000** 2.520
1979 T 0.994** 2.505
1980 D 0.975* 2.458
1981 D 0.989* 2.494
1983 P 0.996** 2.511
1984 A 0.974* 2.457
1985 G 0.977* 2.464
1987 S 1.000** 2.520
1988 V 0.568 1.469
1991 T 0.612 1.576
1992 A 0.648 1.663
1993 E 0.962* 2.428
2007 G 0.979* 2.468
2014 A 0.642 1.648
2015 A 0.616 1.585
2019 A 0.971* 2.450
2020 A 0.971* 2.449
2021 A 0.999** 2.517
2023 A 1.000** 2.520
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_para-PQ)
Pr(w>1) post mean +- SE for w
326 S 0.689 1.180 +- 0.543
838 M 0.861 1.389 +- 0.369
1951 E 0.946 1.475 +- 0.251
1960 T 0.745 1.247 +- 0.507
1962 H 0.983* 1.508 +- 0.181
1965 G 0.686 1.177 +- 0.544
1971 G 0.918 1.446 +- 0.300
1972 D 0.657 1.141 +- 0.560
1974 A 0.718 1.215 +- 0.526
1976 D 0.689 1.181 +- 0.543
1977 E 0.962* 1.489 +- 0.223
1978 A 0.962* 1.490 +- 0.223
1979 T 0.851 1.371 +- 0.402
1980 D 0.742 1.243 +- 0.511
1981 D 0.819 1.337 +- 0.434
1983 P 0.874 1.397 +- 0.372
1984 A 0.742 1.243 +- 0.510
1985 G 0.753 1.256 +- 0.501
1987 S 0.957* 1.485 +- 0.233
1993 E 0.709 1.204 +- 0.531
2007 G 0.760 1.265 +- 0.495
2019 A 0.732 1.231 +- 0.517
2020 A 0.730 1.230 +- 0.518
2021 A 0.898 1.427 +- 0.327
2023 A 0.963* 1.490 +- 0.222
>C1
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
EGGGSFEPDTDHGDGGDPDAGDPAPDEATDGDAPAGGDGSVNGTAEGAAD
ADESNVNSPGEDAAAAAAAAAAAAAAGTTTAGSPGAGSAGRQTAVLVESD
GFVTKNGHKVVIHSRSPSITSRTADVooooooooooooooo
>C2
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWAYHNHNKSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASETYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
EGGGSFEPDTDQGDGGDPDAGDPAPDEQTDGDAPAGGDGSVNGTAEGAAD
ADESNVNSPGEDAAAASAAAAAAAAGTTTAGSPGAGSTGRQTAVLVESDG
FVTKNGHKVVIHSRSPSITSRTADVoooooooooooooooo
>C3
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDFEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
AGGGSFEPDTDGDGDGDCDPDAVDPAPDEQADGGEAPAGGALDGSVNGTG
NGTGTGEGAADADESNVNSPGEDAAAAAVAAAAAATTAGSPGAGSAGRQT
AVLVESDGFVTKNGHKVVIHSRSPSITSRTADVoooooooo
>C4
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
EGGGGSFEPDTDQGDGGDPDAADPAPGDETADGEAPAGGDGSVNGTGGNG
EGAADADESNVNSPGEDAAAAAAAAAAGTTAGTTAGSPGAGSAGRQTAVL
VESDGFVTKNGHKVVIHSRSPSITSRTADVooooooooooo
>C5
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
SGGDGGGSFEPDPEQGDHQGGGGNGGEPEAGAPAPGDAADGEAPTDGEAN
GNGTGDGAAGADESNVNSPIEDAVAAAAAAAVATAAGAVTTTTTAAGSPG
AGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
>C6
MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
PLEDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
KALEVILKGIDVFCVWDCCWVWLKIQEWVSLIVFDPFVELFITLCIVVNT
MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLCAMSPKYYFQEGW
NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
EGGGSFEPDPDQGGGGDGGDPDAAEPQLDEPTDAEGPEGDGSGVNGTGTG
DGAADADENNVNSPGEDAAAAAAAAAGTTTGTAAGSPGAGSAGRQTAVLV
ESDGFVTKNGHKVVIHSRSPSITSRTADVoooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=2116
C1 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
C2 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
C3 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
C4 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
C5 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
C6 MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERKRAEGEV
**************************************************
C1 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
C2 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
C3 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
C4 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
C5 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
C6 PQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELAST
**************************************************
C1 PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYIL
C2 PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
C3 PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
C4 PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
C5 PLEDIDPYYSNVLTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
C6 PLEDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYIL
*******:***:**********************:***************
C1 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
C2 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
C3 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
C4 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
C5 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
C6 VHPLFSLFIITTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMAR
**************************************************
C1 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
C2 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
C3 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
C4 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
C5 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
C6 GFILCPFTYLRDAWNWLDFVVIALAYVTMGIDLGNLAALRTFRVLRALKT
**************************************************
C1 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
C2 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
C3 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
C4 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
C5 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
C6 VAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQK
**************************************************
C1 CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
C2 CIKKFPLDGSWGNLTDENWAYHNHNKSNWYSEDEGISFPLCGNISGAGQC
C3 CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
C4 CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
C5 CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
C6 CIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISGAGQC
******************* ***:*.************************
C1 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
C2 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
C3 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
C4 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
C5 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
C6 DDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRA
**************************************************
C1 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
C2 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
C3 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
C4 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
C5 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
C6 AGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
**************************************************
C1 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
C2 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
C3 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
C4 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
C5 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
C6 REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCIS
**************************************************
C1 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
C2 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
C3 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
C4 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
C5 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
C6 YELFVGGEKGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSH
**************************************************
C1 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
C2 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
C3 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
C4 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
C5 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
C6 KYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
**************************************************
C1 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
C2 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
C3 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
C4 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
C5 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
C6 AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESK
**************************************************
C1 LRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDN
C2 LRNRNTRNQSVGATNGGTTCLDTNHKLDHRDYEIGLECTDEAGKIKHHDN
C3 LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDFEIGLECTDEAGKIKHHDN
C4 LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
C5 LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
C6 LRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDN
***************************:***:******************
C1 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
C2 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
C3 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
C4 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
C5 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
C6 PFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKD
**************************************************
C1 KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
C2 KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
C3 KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
C4 KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
C5 KALEVILKGIDVFCVWDCCWVWLKFQEWVSLIVFDPFVELFITLCIVVNT
C6 KALEVILKGIDVFCVWDCCWVWLKIQEWVSLIVFDPFVELFITLCIVVNT
************************:*************************
C1 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
C2 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
C3 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
C4 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
C5 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLMAMSPKYYFQEGW
C6 MFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLCAMSPKYYFQEGW
************************************* ************
C1 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
C2 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
C3 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
C4 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
C5 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
C6 NIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISI
**************************************************
C1 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
C2 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
C3 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
C4 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
C5 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
C6 MGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWN
**************************************************
C1 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
C2 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
C3 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
C4 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
C5 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
C6 FTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVL
**************************************************
C1 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
C2 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
C3 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
C4 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
C5 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
C6 NLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCF
**************************************************
C1 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
C2 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
C3 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
C4 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
C5 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
C6 KLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEQTQLEVAI
**************************************************
C1 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
C2 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
C3 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
C4 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
C5 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
C6 GDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESH
**************************************************
C1 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
C2 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
C3 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
C4 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
C5 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
C6 KGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDI
**************************************************
C1 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
C2 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
C3 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
C4 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
C5 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
C6 LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET
**************************************************
C1 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
C2 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
C3 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
C4 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
C5 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
C6 AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL
**************************************************
C1 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
C2 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
C3 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
C4 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
C5 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
C6 ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALR
**************************************************
C1 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
C2 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
C3 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
C4 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
C5 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
C6 PLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGK
**************************************************
C1 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
C2 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
C3 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
C4 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
C5 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
C6 YFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQV
**************************************************
C1 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
C2 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
C3 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
C4 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
C5 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
C6 ATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLF
**************************************************
C1 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
C2 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
C3 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
C4 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
C5 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
C6 IGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPR
**************************************************
C1 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
C2 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASETYNAVLDYLN
C3 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
C4 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
C5 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
C6 WRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN
***************************************:**********
C1 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
C2 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
C3 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
C4 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
C5 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
C6 AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEK
**************************************************
C1 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
C2 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
C3 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
C4 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
C5 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
C6 YFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLL
**************************************************
C1 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
C2 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
C3 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
C4 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
C5 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
C6 FLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD
**************************************************
C1 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
C2 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
C3 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
C4 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
C5 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
C6 GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY
**************************************************
C1 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
C2 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
C3 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
C4 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
C5 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
C6 IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEF
**************************************************
C1 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
C2 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
C3 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
C4 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
C5 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
C6 LDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN
**************************************************
C1 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
C2 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
C3 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
C4 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
C5 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
C6 PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARG
**************************************************
C1 EGGG---SFEPDTD------HGDG-GDPDAGDPAP-DEATDGDAPAGG--
C2 EGGG---SFEPDTD------QGDG-GDPDAGDPAP-DEQTDGDAPAGG--
C3 AGGG---SFEPDTDG-----DGDGDCDPDAVDPAPDEQADGGEAPAGGAL
C4 EGGGG--SFEPDTD------QGDG-GDPDAADPAPGDETADGEAPAGG--
C5 SGGDGGGSFEPDPEQGDHQGGGGNGGEPEAGAPAPGDAADG-EAPTDG--
C6 EGGG---SFEPDPDQGG---GGDG-GDPDAAEPQLDEPTDAEGPEGDG--
**. *****.: *.. :*:* * : . .*
C1 DGSVNGT------AEGAADADESNVNSPGEDAAAAAAAAAAA-----AAA
C2 DGSVNGT------AEGAADADESNVNSPGEDAAAASAAAAAA-----AAG
C3 DGSVNGTGNGTGTGEGAADADESNVNSPGEDAAAAAVAAAAA-----ATT
C4 DGSVNGTG---GNGEGAADADESNVNSPGEDAAAAAAAAAAG-----TTA
C5 --EANGNG----TGDGAAGADESNVNSPIEDAVAAAAAAAVATAAGAVTT
C6 -SGVNGTG----TGDGAADADENNVNSPGEDAAAAAAAAAGT-----TTG
.**. .:***.***.***** ***.**:.*** .:
C1 GTTTAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
C2 -TTTAGSPGAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
C3 ----AGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
C4 -GTTAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
C5 TTTAAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
C6 --TAAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV
********:*************************************
C1 ooooooooooooooo-
C2 oooooooooooooooo
C3 oooooooo--------
C4 ooooooooooo-----
C5 ----------------
C6 oooooooooooo----
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
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-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 2091 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 2091 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/340/para-PQ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D 