--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Dec 10 02:26:02 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/325/nkd-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -5089.79 -5103.18 2 -5089.35 -5103.67 -------------------------------------- TOTAL -5089.55 -5103.45 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/325/nkd-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.503200 0.001553 0.431010 0.583212 0.501100 1167.67 1233.12 1.000 r(A<->C){all} 0.065476 0.000133 0.043309 0.087562 0.065288 816.34 898.26 1.000 r(A<->G){all} 0.164292 0.000422 0.126686 0.205815 0.163483 1106.93 1135.67 1.000 r(A<->T){all} 0.106425 0.000525 0.063222 0.150321 0.105321 815.21 827.44 1.000 r(C<->G){all} 0.095433 0.000198 0.068631 0.122182 0.094530 927.54 1012.63 1.000 r(C<->T){all} 0.445223 0.001216 0.384464 0.519995 0.445305 447.59 791.94 1.000 r(G<->T){all} 0.123150 0.000604 0.075428 0.171322 0.121948 867.66 899.76 1.000 pi(A){all} 0.260297 0.000094 0.240630 0.278652 0.260241 1086.42 1149.67 1.000 pi(C){all} 0.348951 0.000112 0.329190 0.370499 0.349037 1171.18 1206.23 1.000 pi(G){all} 0.268056 0.000094 0.249036 0.286584 0.268029 1030.56 1154.48 1.000 pi(T){all} 0.122696 0.000048 0.110340 0.137209 0.122628 869.94 989.37 1.000 alpha{1,2} 0.252702 0.005575 0.113975 0.393663 0.245623 617.37 688.95 1.000 alpha{3} 1.472105 0.421492 0.438438 2.731180 1.346534 825.22 901.75 1.000 pinvar{all} 0.327987 0.009761 0.126665 0.508803 0.340840 649.98 660.99 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -4097.859599 Model 2: PositiveSelection -4096.555314 Model 0: one-ratio -4170.697307 Model 3: discrete -4095.980489 Model 7: beta -4099.331377 Model 8: beta&w>1 -4096.071671 Model 0 vs 1 145.67541600000004 Model 2 vs 1 2.608570000000327 Model 8 vs 7 6.519412000001466 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_nkd-PB) Pr(w>1) post mean +- SE for w 84 S 0.913 1.886 92 S 0.630 1.486 99 G 0.709 1.598 100 H 0.647 1.512 101 T 0.674 1.548 153 T 0.820 1.759 319 A 0.580 1.414 320 A 0.943 1.928 335 Q 0.797 1.723 336 S 0.897 1.863 338 S 0.938 1.922 339 A 0.625 1.478 340 R 0.677 1.554 487 H 0.782 1.703 488 S 0.838 1.781 489 S 0.701 1.588 490 H 0.678 1.555 491 S 0.949 1.937 508 S 0.868 1.822 510 V 0.648 1.498 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_nkd-PB) Pr(w>1) post mean +- SE for w 84 S 0.910 2.131 +- 0.625 92 S 0.637 1.664 +- 0.838 99 G 0.720 1.812 +- 0.808 100 H 0.653 1.692 +- 0.831 101 T 0.687 1.754 +- 0.824 102 A 0.514 1.419 +- 0.899 153 T 0.815 1.976 +- 0.727 319 A 0.586 1.574 +- 0.845 320 A 0.931 2.163 +- 0.591 335 Q 0.800 1.949 +- 0.749 336 S 0.902 2.120 +- 0.641 338 S 0.927 2.155 +- 0.598 339 A 0.646 1.682 +- 0.843 340 R 0.684 1.748 +- 0.822 487 H 0.790 1.932 +- 0.759 488 S 0.850 2.036 +- 0.706 489 S 0.715 1.803 +- 0.811 490 H 0.695 1.769 +- 0.823 491 S 0.943 2.181 +- 0.577 508 S 0.877 2.081 +- 0.674 510 V 0.684 1.738 +- 0.867
>C1 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQSHHQTNHHSSGRSHPG HTAHPQDVSSGGSHSKHLRISSTSNGKHGKYSNMQQQLPQDEDVVDAAAT MQQQQHTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTFY DLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEGK SKSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGASAL TTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAHAPAADQPSGSGTK ATGKSHHHQSQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENMLNLKCCK PEVDQVDCPSHRQHHQSHPNHQMRQQDIYMKQATQRVKMLRRARKQKKTP SQCESHTATGSTTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQST HGGAHHPQHSSSSAGHRGQRSAAPPHSSHSSQPPQPPRASPTAHTYLPSA VGHoooooooooooooooooooooo >C2 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQSHHQTNHHSSARSHPG HAVHPQDVSTGGSHSKHLRISSTSNGKHGKYSNMQQQLPQDEDVVDAAAT MQQQQQDTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTF YDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEG KSKSQPVVPVPVAVGYSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGATA LTTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAHAPAADQPSGSGT KASEKSHHHQAQSARYHQKNNSRAEQCCTEQNTADNGHNTYENMLNLKCC KPEVDQVDCPSHRQHHQSHQNHQMRQQDIYMKQATQRVKMLRRARKQKKT PSQCESHTATGSTTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQS THGGGHHPQHSSGSAGHRGQRSAAPPHSSHSSQPPQPPRASPTAHTYLPS AVGHooooooooooooooooooooo >C3 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQSHHQTNHHSSGRSHPG HAVHPQDVSSGGSHSKHLRISSTSNGKHGKYSNMQQQLPQDEDVVDAAAT MQQQQQHTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTF YDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEG KSKSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGATA LTTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAHAPAADQPSGSGT KATGKSHHHQAQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENMLNLKCC KPEVDQVDCPSHRQHHQSHQNHQMRQQDIYMKQATQRVKMLRRARKQKKT PSQCESHTATGSTTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQS THGGGHHPQHSSGSAGHRGQRSAAPPHSSHSSQPPQPPRASPTAHTYLPS AVGHooooooooooooooooooooo >C4 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASGGGSKQQSHHQTNHHTSGRNHPG HPGHPQDVSSGGSHSKHLRISSTSNGKHGKYSSMQQQLPQDEDAVDAAAT MQQQHTGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTFYD LDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEGKS KSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGGGVGSGGATVLT TSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAHTHTHSHTPAADQPSG SGTKGTGKSHHHQAQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENMLNL KCCKPEVDQVDCPSHRQHHQSHQNHQMRQQDIYMKQATQRVKMLRRARKQ KKTPSQCESHTATGSTTTTTTTATPTLQYELENTHVNYQPQSGRPAVAAQ LQSTHGGSHHPQHSSGSASHRGQRSAAAPHSTQSSQPSQPPQPPRASPTA HTYLPPAAGHooooooooooooooo >C5 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASGGGSKQQSQHQTSHHSSGRSHPG QPGHPQDVSSGGSHSKHLRISSTSNGKHGKYSNMQQHLPQDEDVVDAAAT MQQQHSGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQFSFTFYD LDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTVSPEGKS KSQPVVPVPVAAGFSSSHASKLKKLPTGLAAMSKPLAGAGVGSGGATALT TSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAHTHTHTHTHTPAAADQ PSGSGTKATGKSHHHQAQSARYHQKNNSRAEQCCTEQNTPDNGHNTYENM LNLKCCKPEVDQVDCPSHRQHHQSHQNHQMRQQDIYMKQATQRVKMLRRA RKQKKTPSQCESHTATGSTTTTTTTATPTLQYGLENTHVNYQPQSGRPAV AAQLQSTHGGPHHPQHSSSSASHRGQRSAAPPHSTQPSQPPQPPRASPTA HTYLPPAVGHooooooooooooooo >C6 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASSGATKQQSHQHHQSHSQTHPHHH HHASGRSHAAHPGHPQDASSGGSHSKHLRINSTSNGKHGKYSNMQQHLPQ DEDVVDAAASVQQHAGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQP LQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVR LTVSPEGKSKAQPVVPLPVPVPVATGFGSSHASKLKKLPSGLGGAVGSGG ATALTTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKDMATTATDQPSGSGA RSGGKGHHHQAQATRYHQKNSSRAEQYCAELNAPDNGHNTYENMLNLKCC KPEGDQADCPSHRQHHQLRQQDIYMKQATQRVKMLRRARKQKKTPSQCES HTATGSTTTTTTTATPTLQYGLENTHANCQPQSGRPAIAAQLQSTYGGHH HQHSSGHRGQRSAAATAQPQCPPQCQYQSQCQPPQPPRTSPTAHTHLPSA AGHoooooooooooooooooooooo >C7 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASSGATKQSHQHHQSQSNPHHHHSS GRSHPSQPGHPQDVSSGGSHSKHLRISSTSNGKHGKYSNTQQHLPQDEDV VDAAAAVQQQHAGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQPLQF SFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINVRLTV SPEGKSKSQPVVPLPVPVPVAAGFGSSHASKLKKLPTGLAGGVGSGGTTS AGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDLATADQATGSGAKSGAKGH HHQAQATRYHQKNSSRAEQCCAEQNTPDNGHNTYENMLNLKCCKPEGDQA DCPSHLLHHQHHQNHQNHQLRQQDIYMKQATQRVKMLRRARKQKKTPSQC ESHTATGSTTTTTTTTATPTLQYGLENTHVNCQPQSGRPAIAAQLQSTYG GHHHHQHSSGHRGQRSAAPSQCQSQSQCQPPQPPRASPTAHTHLPPAAGH ooooooooooooooooooooooooo >C8 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNVSSGVSKQQQSHHQHHQTNPHHHHS SGRSHPSHSGNPQDVSSSASHSKHLRISSTSNGKHGKYSNMQQQHLPQDE DVVDAAASMQQQPQHSGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKSSQ PLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTINV RLTVSPEGKSKSQPVVAVPVPAGFSSSHASKLKKLPTGLAAMSKPLAAGG VGSGGATALTTSAGNRRQHRYRPRKLIKSDDEDDDSNSEKEKDAAPTSEQ ASGSGAKAGGKSHHQARYHHNQSQNQKNNSRAEQCCTDQNTPDNGHNTYE NMLNLKCCKPESDQVDCPSHRQHHQLRQQDIYMKQATQRVKMLRRARKQK KTPSQCESHTATGSTTTTTTTATPTLQYGLENPHVNCQPQSGRPAVAAQL QSTYGGYHHHQHSSGTSSHRGQRSAAAAAASQPSQPPQPPRASPTAHTHL PSAAGHooooooooooooooooooo >C9 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL LVSERDNNIQLRSPVVNIITTPPGNASSGAGKQQAHLHHPTNPHHHHAAG RSHPSQPGHPQDVISGGSHSKHLRISSTNNGNGNGKHGKYSNMQHNVHLP QDEDVVDAAASMQQQQHGGHAHSRHLHHHKEERIRLEEFTCDVSVEGGKS SQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPHCGSKTI NVRLTVSPEGKSKAQPVVPVPVAAGFGSSHASKLKKLPTGLAAMSKPLAG AAPNAAGAGGGGSGGATALTTSAGNRRQHRYRPRKLIKSDDEDDDSNSEK EKDPSAPSLEQPSGSGARKSHHQSRYSHGQKISSRAEQCCSEQHTPDNNA HNTYENMLNLKCCKPESDQVDCPSHRQHQQQQHHLQHHQNHQMRQQDIYM KQATQRVKMLRRARKQKKTPSQCESHTATGSTTTTTTTTATPTLQYGLEN PHVNCQPQSGRPAVAAQLQSAHGGHHLHSSGTATAGHRGQRSTAAAAAAA AVAPQPQPPRASPTTHTHLPPAAGH CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=9, Len=634 C1 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C2 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C3 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C4 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C5 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C6 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C7 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C8 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL C9 MAGNIVKWWKHKILGGYKQFSVQECTTDSEELMYHQVRASSSCSAPPDLL ************************************************** C1 LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQ----SHHQTN------ C2 LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQ----SHHQTN------ C3 LVSERDNNIQLRSPVVNIITTPPGNASGAGSKQQ----SHHQTN------ C4 LVSERDNNIQLRSPVVNIITTPPGNASGGGSKQQ----SHHQTN------ C5 LVSERDNNIQLRSPVVNIITTPPGNASGGGSKQQ----SQHQTS------ C6 LVSERDNNIQLRSPVVNIITTPPGNASSGATKQQSHQHHQSHSQTHPHHH C7 LVSERDNNIQLRSPVVNIITTPPGNASSGATK-QSHQHHQSQSNP---HH C8 LVSERDNNIQLRSPVVNIITTPPGNVSSGVSKQQQSHHQHHQTNP---HH C9 LVSERDNNIQLRSPVVNIITTPPGNASSGAGKQQ--AHLHHPTNP---HH *************************.*.. * * : :. C1 HHSSGRSHPGHTAHPQDVSSGGSHSKHLRISSTSNG----KHGKYSNMQQ C2 HHSSARSHPGHAVHPQDVSTGGSHSKHLRISSTSNG----KHGKYSNMQQ C3 HHSSGRSHPGHAVHPQDVSSGGSHSKHLRISSTSNG----KHGKYSNMQQ C4 HHTSGRNHPGHPGHPQDVSSGGSHSKHLRISSTSNG----KHGKYSSMQQ C5 HHSSGRSHPGQPGHPQDVSSGGSHSKHLRISSTSNG----KHGKYSNMQQ C6 HHASGRSHAAHPGHPQDASSGGSHSKHLRINSTSNG----KHGKYSNMQQ C7 HHSSGRSHPSQPGHPQDVSSGGSHSKHLRISSTSNG----KHGKYSNTQQ C8 HHSSGRSHPSHSGNPQDVSSSASHSKHLRISSTSNG----KHGKYSNMQQ C9 HHAAGRSHPSQPGHPQDVISGGSHSKHLRISSTNNGNGNGKHGKYSNMQH **::.*.*..:. :***. :..********.**.** ******. *: C1 --QLPQDEDVVDAAATMQQQQ-HTGHAHSRHLHHHKEERIRLEEFTCDVS C2 --QLPQDEDVVDAAATMQQQQQDTGHAHSRHLHHHKEERIRLEEFTCDVS C3 --QLPQDEDVVDAAATMQQQQQHTGHAHSRHLHHHKEERIRLEEFTCDVS C4 --QLPQDEDAVDAAATMQQQH--TGHAHSRHLHHHKEERIRLEEFTCDVS C5 --HLPQDEDVVDAAATMQQQH--SGHAHSRHLHHHKEERIRLEEFTCDVS C6 --HLPQDEDVVDAAASVQQ---HAGHAHSRHLHHHKEERIRLEEFTCDVS C7 --HLPQDEDVVDAAAAVQQQ--HAGHAHSRHLHHHKEERIRLEEFTCDVS C8 -QHLPQDEDVVDAAASMQQQPQHSGHAHSRHLHHHKEERIRLEEFTCDVS C9 NVHLPQDEDVVDAAASMQQQ-QHGGHAHSRHLHHHKEERIRLEEFTCDVS :******.*****::** ************************** C1 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C2 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C3 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C4 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C5 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C6 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C7 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C8 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH C9 VEGGKSSQPLQFSFTFYDLDGHHGKITKDDIVGIVYTIYESIGKSVVVPH ************************************************** C1 CGSKTINVRLTVSPEGKSKSQPVV----PVPVAAGFSSSHASKLKKLPTG C2 CGSKTINVRLTVSPEGKSKSQPVV----PVPVAVGYSSSHASKLKKLPTG C3 CGSKTINVRLTVSPEGKSKSQPVV----PVPVAAGFSSSHASKLKKLPTG C4 CGSKTINVRLTVSPEGKSKSQPVV----PVPVAAGFSSSHASKLKKLPTG C5 CGSKTINVRLTVSPEGKSKSQPVV----PVPVAAGFSSSHASKLKKLPTG C6 CGSKTINVRLTVSPEGKSKAQPVVPLPVPVPVATGFGSSHASKLKKLPSG C7 CGSKTINVRLTVSPEGKSKSQPVVPLPVPVPVAAGFGSSHASKLKKLPTG C8 CGSKTINVRLTVSPEGKSKSQPVV----AVPVPAGFSSSHASKLKKLPTG C9 CGSKTINVRLTVSPEGKSKAQPVV----PVPVAAGFGSSHASKLKKLPTG *******************:**** .***..*:.***********:* C1 LAAMSKPLAG--------GGVGSGGASALTTSAGNRRQHRYRPRKLIKSD C2 LAAMSKPLAG--------GGVGSGGATALTTSAGNRRQHRYRPRKLIKSD C3 LAAMSKPLAG--------GGVGSGGATALTTSAGNRRQHRYRPRKLIKSD C4 LAAMSKPLAG--------GGVGSGGATVLTTSAGNRRQHRYRPRKLIKSD C5 LAAMSKPLAG--------AGVGSGGATALTTSAGNRRQHRYRPRKLIKSD C6 LG----------------GAVGSGGATALTTSAGNRRQHRYRPRKLIKSD C7 LA----------------GGVGSGG----TTSAGNRRQHRYRPRKLIKSD C8 LAAMSKPLAA--------GGVGSGGATALTTSAGNRRQHRYRPRKLIKSD C9 LAAMSKPLAGAAPNAAGAGGGGSGGATALTTSAGNRRQHRYRPRKLIKSD *. .. **** ********************* C1 DEDDDSNSEKEKDA-----AHAP---AADQPSGSGTKATGKSHHHQSQSA C2 DEDDDSNSEKEKDA-----AHAP---AADQPSGSGTKASEKSHHHQAQSA C3 DEDDDSNSEKEKDA-----AHAP---AADQPSGSGTKATGKSHHHQAQSA C4 DEDDDSNSEKEKDAHTHTHSHTP---AADQPSGSGTKGTGKSHHHQAQSA C5 DEDDDSNSEKEKDAHTHTHTHTHTPAAADQPSGSGTKATGKSHHHQAQSA C6 DEDDDSNSEKDMATT-----------ATDQPSGSGARSGGKGHHHQAQAT C7 DEDDDSNSEKEKDLA-----------TADQATGSGAKSGAKGHHHQAQAT C8 DEDDDSNSEKEKD-------AAP---TSEQASGSGAKAGGKSHHQARYHH C9 DEDDDSNSEKEKDP------SAP---SLEQPSGSGAR---KSHHQSRYSH **********: : :*.:***:: *.**: C1 R--YHQKNNSRAEQCCTEQNTPDN-GHNTYENMLNLKCCKPEVDQVDCPS C2 R--YHQKNNSRAEQCCTEQNTADN-GHNTYENMLNLKCCKPEVDQVDCPS C3 R--YHQKNNSRAEQCCTEQNTPDN-GHNTYENMLNLKCCKPEVDQVDCPS C4 R--YHQKNNSRAEQCCTEQNTPDN-GHNTYENMLNLKCCKPEVDQVDCPS C5 R--YHQKNNSRAEQCCTEQNTPDN-GHNTYENMLNLKCCKPEVDQVDCPS C6 R--YHQKNSSRAEQYCAELNAPDN-GHNTYENMLNLKCCKPEGDQADCPS C7 R--YHQKNSSRAEQCCAEQNTPDN-GHNTYENMLNLKCCKPEGDQADCPS C8 NQSQNQKNNSRAEQCCTDQNTPDN-GHNTYENMLNLKCCKPESDQVDCPS C9 G----QKISSRAEQCCSEQHTPDNNAHNTYENMLNLKCCKPESDQVDCPS ** .***** *:: ::.** .**************** **.**** C1 HRQHHQS------HPNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C2 HRQHHQS------HQNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C3 HRQHHQS------HQNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C4 HRQHHQS------HQNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C5 HRQHHQS------HQNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C6 HR------------QHHQLRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C7 HLLHHQHH---QNHQNHQLRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C8 HRQH------------HQLRQQDIYMKQATQRVKMLRRARKQKKTPSQCE C9 HRQHQQQQHHLQHHQNHQMRQQDIYMKQATQRVKMLRRARKQKKTPSQCE * **:******************************* C1 SHTATGS-TTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQSTHGG C2 SHTATGS-TTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQSTHGG C3 SHTATGS-TTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQSTHGG C4 SHTATGS-TTTTTTTATPTLQYELENTHVNYQPQSGRPAVAAQLQSTHGG C5 SHTATGS-TTTTTTTATPTLQYGLENTHVNYQPQSGRPAVAAQLQSTHGG C6 SHTATGS-TTTTTTTATPTLQYGLENTHANCQPQSGRPAIAAQLQSTYGG C7 SHTATGSTTTTTTTTATPTLQYGLENTHVNCQPQSGRPAIAAQLQSTYGG C8 SHTATGS-TTTTTTTATPTLQYGLENPHVNCQPQSGRPAVAAQLQSTYGG C9 SHTATGSTTTTTTTTATPTLQYGLENPHVNCQPQSGRPAVAAQLQSAHGG ******* ************** ***.*.* ********:******::** C1 AHHPQHSSSSAGHRGQRSAAP------PHSSHS---SQPPQPPRASPTAH C2 GHHPQHSSGSAGHRGQRSAAP------PHSSHS---SQPPQPPRASPTAH C3 GHHPQHSSGSAGHRGQRSAAP------PHSSHS---SQPPQPPRASPTAH C4 SHHPQHSSGSASHRGQRSAAA------PHSTQSSQPSQPPQPPRASPTAH C5 PHHPQHSSSSASHRGQRSAAP------PHSTQ---PSQPPQPPRASPTAH C6 -HHHQHSSG---HRGQRSAAATAQPQCPPQCQYQSQCQPPQPPRTSPTAH C7 HHHHQHSSG---HRGQRSAA-------PSQCQSQSQCQPPQPPRASPTAH C8 YHHHQHSSGTSSHRGQRSAAA------AAASQP--SQP-PQPPRASPTAH C9 HHLHSSGTATAGHRGQRSTAA------AAAAAA--VAPQPQPPRASPTTH * . .:. ******:* . *****:***:* C1 TYLPSAVGHoooooooooooooooooooooo--- C2 TYLPSAVGHooooooooooooooooooooo---- C3 TYLPSAVGHooooooooooooooooooooo---- C4 TYLPPAAGHooooooooooooooo---------- C5 TYLPPAVGHooooooooooooooo---------- C6 THLPSAAGHoooooooooooooooooooooo--- C7 THLPPAAGHooooooooooooooooooooooooo C8 THLPSAAGHooooooooooooooooooo------ C9 THLPPAAGH------------------------- *:**.*.** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 575 type PROTEIN Struct Unchecked Input File /opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 575 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/325/nkd-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [61684] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -o