--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Tue Nov 22 14:01:46 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/305/MFS10-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -6584.40         -6598.46
2      -6584.21         -6599.94
--------------------------------------
TOTAL    -6584.30         -6599.45
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         1.224990    0.006457    1.068769    1.384664    1.220471   1431.89   1466.44    1.000
r(A<->C){all}   0.105925    0.000191    0.080130    0.132326    0.105604   1040.29   1173.93    1.000
r(A<->G){all}   0.242967    0.000503    0.197289    0.285457    0.242676    763.34    772.09    1.000
r(A<->T){all}   0.108631    0.000330    0.074858    0.146068    0.108070    924.80    931.96    1.000
r(C<->G){all}   0.083421    0.000112    0.063979    0.104613    0.082931    719.81    837.18    1.000
r(C<->T){all}   0.402698    0.000726    0.350323    0.457509    0.402740    554.22    816.29    1.000
r(G<->T){all}   0.056358    0.000117    0.035877    0.078330    0.055933   1062.29   1130.16    1.002
pi(A){all}      0.198767    0.000082    0.180395    0.216013    0.198901   1006.12   1012.30    1.000
pi(C){all}      0.308989    0.000101    0.289940    0.328862    0.308986    929.03   1068.41    1.000
pi(G){all}      0.291956    0.000101    0.271558    0.311320    0.291841   1189.34   1263.36    1.001
pi(T){all}      0.200288    0.000079    0.183913    0.217865    0.200102   1019.32   1035.21    1.000
alpha{1,2}      0.150711    0.000169    0.125941    0.176654    0.149880   1307.64   1404.32    1.000
alpha{3}        3.887641    0.857525    2.253907    5.698344    3.760210   1045.66   1049.04    1.000
pinvar{all}     0.351246    0.001044    0.285476    0.412218    0.352520   1325.13   1375.83    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-5860.349799
Model 2: PositiveSelection	-5860.349962
Model 0: one-ratio	-5964.484685
Model 3: discrete	-5843.619141
Model 7: beta	-5847.753856
Model 8: beta&w>1	-5844.011633


Model 0 vs 1	208.26977200000147

Model 2 vs 1	3.260000012232922E-4

Model 8 vs 7	7.484446000000389

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_MFS10-PA)

            Pr(w>1)     post mean +- SE for w

   296 E      0.994**       3.530

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_MFS10-PA)

            Pr(w>1)     post mean +- SE for w

   120 H      0.539         1.034 +- 0.534
   296 E      0.990*        1.505 +- 0.147
   314 A      0.765         1.298 +- 0.397
   321 G      0.586         1.099 +- 0.508
   324 E      0.676         1.199 +- 0.465
   326 S      0.874         1.401 +- 0.313
   337 S      0.573         1.034 +- 0.581
   543 T      0.789         1.306 +- 0.421

>C1
MPPHKWTDESRDASCYYDPSTSSNSSASAERSDDEADDEREAFCSGERPL
IRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESER
EYIERSLQVQRLINQDLAEAEEEEGQDEVSLRAPPEEPIPWSSLLTSVPL
WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV
GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW
VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP
YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTPP
TRNSRSQRAooooooooooooo
>C2
MPPHKWTDESRDASCYYEPSSSSNSSASADRSDDEADDEREAFCSGERPL
IRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLINPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESER
EYIERSLQVQRLINQDLAEPEEEEGEDEVSLRAPPEAPIPWSSLLTSVPL
WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV
GIACSALADWMLARRYISLLSSYKLWNTVASVVPSLGLIGIIYVGCDWVW
VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP
YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTPP
TRNSRSQRAooooooooooooo
>C3
MPPHKWTDESRDASCYYEPSTSSNSSDSADRSDDEADDEREAFCSGERPL
IRSSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNASVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISVTER
EYIERSLHVQRLINPDLAEPEEEEEGQDDVNLRRPSEEPIPWSSLLTSVP
LWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTAWF
VGIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWV
WVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLA
PYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTP
PTRSSRSQRAoooooooooooo
>C4
MPPHKWTDESRDASCYYEPSSSSNSSASAERSDDEADDEREAFCSGERPL
IRTSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPVPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAQWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISASER
EYIERCLQVQRLINQDLAEPEEEEAQDGVNLRTPSEEPIPWTSLLTSVPL
WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTAWFV
GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW
VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP
YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFVYLIFASAEEQSWSKTPH
TRNSRSQRAooooooooooooo
>C5
MPPHKWTDESRDASCYYEPSASSNSSAASADRSDDEADDEREAFCSGERP
LIRSGGAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPRPEPPHNGSDPSPQREGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDRPSDHPRISLSER
EYIERSLHAQRLISQADLAEPEEDEDQDEVNLRRLPPAEEEPIPWTSLLS
SVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLT
SWFVGIACSALADWMLARRYISQLNSYKLWNTVASVVPSLGLIGIIYVGC
DWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICG
FLAPYVIGLIINHRETLTQWHVVFWLAAGLNIAGNFIYLIFASAEEQSWS
KAPooooooooooooooooooo
>C6
MPPHKWTDESRDASCYYEPSSSSNSSATADRSDDEADDEREAFCSGERPL
IRSSAAGEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQREGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDRPSDHPRIATSER
EYIERSLLAQRLINQELGDPEEEEEGEGEGEDGVGVRRRPSDDPIPWTSL
LTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPY
LTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYV
GCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANI
CGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQS
WSKAPPTRISPSLRAooooooo
>C7
MPPHKWTDESRDASCYYEPSSSSNSSATADRSDDEADDEREAFCSGERPL
IRSSAAGEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPSDHPRISTSER
EYIERSLLAQRLINQELVGPEEEEGQDQDEVGVRRPTDEPIPWSSLLTSV
PLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSW
FVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDW
VWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFL
APYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKA
PPTRISRSLRAooooooooooo
>C8
MPPHKWTDDSRDATCYYEPSSSSNSSASVERSDDEADDEREAFCSGERPL
IRSSGAAEEHHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISNSER
EYIERSLQAQLLINQELIEPEEDEGQDQDEVNLRGRTDDPIPWSSLLTSV
PLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSW
FVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDW
VWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFL
APYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKA
PPTSISRSLRAooooooooooo
>C9
MPPHKWTDESRDASCYYQDAAASRFRRPSSSSNSSASVDRSEDEADDERE
AFCSGERPLIRSSDAAEVNEGCGPKTRHIFGFMGFLGFAVVYAMRVNLSV
AIVAMVNQTAIPHSNSSVIDTDTCPLPAPNHNGSDPNPQKEGEFVWDEAT
QGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAA
HWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGSN
IGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSD
HPRISTSEREYIERCLLAQRLISQEIAEPEEEEDEEEKDEVNLRRPQEEP
IPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNAL
LNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGL
IGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGIT
NSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFA
SAEEQSWSKRPPTTRISRSLRA
>C10
MPPHKWTDESRDASCYYEPSSSSNSSASVERSDDEADDEREAFCSGERPL
IRSSGAAEVNDGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT
AIPHSNSSVIDADTCPLPEPNHNGSNPNPQREGEFVWDEATQGLVLGSFF
YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLLTPLAAHWDLPLLVL
VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGSNIGTVISMPL
AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPSDHPRISASER
EYIERCLRLVNQDRLVAEEQDQDEEQDGVNLRGPQEKPIPWSSLLTSVPL
WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV
GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW
VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFMAP
YVIGLIINHRETLTQWHLVFWLAAGLNIGGNFIYLIFASAEEQSWSKTPA
PTTTRISRASLRAooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=99, Nseq=10, Len=595 

C1              MPPHKWTDESRDASCYYD---------PSTSSNS-SASAERSDDEADDER
C2              MPPHKWTDESRDASCYYE---------PSSSSNS-SASADRSDDEADDER
C3              MPPHKWTDESRDASCYYE---------PSTSSNS-SDSADRSDDEADDER
C4              MPPHKWTDESRDASCYYE---------PSSSSNS-SASAERSDDEADDER
C5              MPPHKWTDESRDASCYYE---------PSASSNSSAASADRSDDEADDER
C6              MPPHKWTDESRDASCYYE---------PSSSSNS-SATADRSDDEADDER
C7              MPPHKWTDESRDASCYYE---------PSSSSNS-SATADRSDDEADDER
C8              MPPHKWTDDSRDATCYYE---------PSSSSNS-SASVERSDDEADDER
C9              MPPHKWTDESRDASCYYQDAAASRFRRPSSSSNS-SASVDRSEDEADDER
C10             MPPHKWTDESRDASCYYE---------PSSSSNS-SASVERSDDEADDER
                ********:****:***:         **:**** : :.:**:*******

C1              EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
C2              EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
C3              EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS
C4              EAFCSGERPLIRTSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS
C5              EAFCSGERPLIR-SGGAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS
C6              EAFCSGERPLIRSSAAGEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS
C7              EAFCSGERPLIRSSAAGEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
C8              EAFCSGERPLIRSSGAAEEHHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
C9              EAFCSGERPLIRSSDAAEVNEGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
C10             EAFCSGERPLIRSSGAAEVNDGCGPKTRHIFGFMGFLGFAVVYAMRVNLS
                ************ * ..* :.***********:*****************

C1              VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA
C2              VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA
C3              VAIVAMVNQTAIPHSNASVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA
C4              VAIVAMVNQTAIPHSNSSVIDTDTCPLPVPHHNGSDPNPQKEGEFVWDEA
C5              VAIVAMVNQTAIPHSNSSVIDTDTCPRPEPPHNGSDPSPQREGEFVWDEA
C6              VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQREGEFVWDEA
C7              VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEA
C8              VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEA
C9              VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPNHNGSDPNPQKEGEFVWDEA
C10             VAIVAMVNQTAIPHSNSSVIDADTCPLPEPNHNGSNPNPQREGEFVWDEA
                ****************:****:**** * * ****:*.**:*********

C1              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLA
C2              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLINPLA
C3              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA
C4              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA
C5              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA
C6              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA
C7              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA
C8              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA
C9              TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA
C10             TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLLTPLA
                **************************************:**:***:.***

C1              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C2              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C3              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C4              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAQWIPPLERNKFAAIVYAGS
C5              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C6              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C7              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C8              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS
C9              AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGS
C10             AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGS
                *******************************:************:*****

C1              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C2              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C3              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C4              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C5              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDRPS
C6              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDRPS
C7              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPS
C8              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C9              NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS
C10             NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPS
                **************************************:********:**

C1              DHPRISESEREYIERSLQVQRLINQ-DLAEAEEEE-----GQDEVSLRAP
C2              DHPRISESEREYIERSLQVQRLINQ-DLAEPEEEE-----GEDEVSLRAP
C3              DHPRISVTEREYIERSLHVQRLINP-DLAEPEEEEE----GQDDVNLRRP
C4              DHPRISASEREYIERCLQVQRLINQ-DLAEPEEEE-----AQDGVNLRTP
C5              DHPRISLSEREYIERSLHAQRLISQADLAEPEEDE-----DQDEVNLRRL
C6              DHPRIATSEREYIERSLLAQRLINQ-ELGDPEEEEEGEGEGEDGVGVRRR
C7              DHPRISTSEREYIERSLLAQRLINQ-ELVGPEEEE---GQDQDEVGVRR-
C8              DHPRISNSEREYIERSLQAQLLINQ-ELIEPEEDE---GQDQDEVNLRGR
C9              DHPRISTSEREYIERCLLAQRLISQ-EIAEPEEEED--EEEKDEVNLRRP
C10             DHPRISASEREYIERCL---RLVNQ-DRLVAEEQDQ--DEEQDGVNLRGP
                *****: :*******.*    *:.  :   .**::      :* *.:*  

C1              P---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C2              P---EAPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C3              S---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C4              S---EEPIPWTSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C5              PPAEEEPIPWTSLLSSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C6              PS--DDPIPWTSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C7              PT--DEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C8              T---DDPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C9              Q---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
C10             Q---EKPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF
                    : ****:***:***********************************

C1              DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLNSYKLWNTVAS
C2              DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLSSYKLWNTVAS
C3              DIQSNALLNAVPYLTAWFVGIACSALADWMLARRYISLLNSYKLWNTVAS
C4              DIQSNALLNAVPYLTAWFVGIACSALADWMLARRYISLLNSYKLWNTVAS
C5              DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISQLNSYKLWNTVAS
C6              DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS
C7              DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS
C8              DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS
C9              DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS
C10             DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLNSYKLWNTVAS
                ***************:****************:**** *.**********

C1              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C2              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C3              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C4              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C5              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C6              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C7              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C8              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C9              VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
C10             VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA
                **************************************************

C1              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C2              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C3              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C4              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C5              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHVVFWLAAGLNIAGN
C6              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C7              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C8              GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C9              GTMYGITNSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN
C10             GTMYGITNSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIGGN
                ****************:*******************:**********.**

C1              FIYLIFASAEEQSWSKTPP---TRNSR-SQRAooooooooooooo
C2              FIYLIFASAEEQSWSKTPP---TRNSR-SQRAooooooooooooo
C3              FIYLIFASAEEQSWSKTPP---TRSSR-SQRAoooooooooooo-
C4              FVYLIFASAEEQSWSKTPH---TRNSR-SQRAooooooooooooo
C5              FIYLIFASAEEQSWSKAPo---ooooo-ooooooooooooo----
C6              FIYLIFASAEEQSWSKAPP---TRISP-SLRAooooooo------
C7              FIYLIFASAEEQSWSKAPP---TRISR-SLRAooooooooooo--
C8              FIYLIFASAEEQSWSKAPP---TSISR-SLRAooooooooooo--
C9              FIYLIFASAEEQSWSKRPP--TTRISR-SLRA-------------
C10             FIYLIFASAEEQSWSKTPAPTTTRISRASLRAooooooooo----
                *:************** *                           




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  572 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  572 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/305/MFS10