--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Tue Nov 22 14:01:46 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/305/MFS10-PA/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -6584.40 -6598.46 2 -6584.21 -6599.94 -------------------------------------- TOTAL -6584.30 -6599.45 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/305/MFS10-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 1.224990 0.006457 1.068769 1.384664 1.220471 1431.89 1466.44 1.000 r(A<->C){all} 0.105925 0.000191 0.080130 0.132326 0.105604 1040.29 1173.93 1.000 r(A<->G){all} 0.242967 0.000503 0.197289 0.285457 0.242676 763.34 772.09 1.000 r(A<->T){all} 0.108631 0.000330 0.074858 0.146068 0.108070 924.80 931.96 1.000 r(C<->G){all} 0.083421 0.000112 0.063979 0.104613 0.082931 719.81 837.18 1.000 r(C<->T){all} 0.402698 0.000726 0.350323 0.457509 0.402740 554.22 816.29 1.000 r(G<->T){all} 0.056358 0.000117 0.035877 0.078330 0.055933 1062.29 1130.16 1.002 pi(A){all} 0.198767 0.000082 0.180395 0.216013 0.198901 1006.12 1012.30 1.000 pi(C){all} 0.308989 0.000101 0.289940 0.328862 0.308986 929.03 1068.41 1.000 pi(G){all} 0.291956 0.000101 0.271558 0.311320 0.291841 1189.34 1263.36 1.001 pi(T){all} 0.200288 0.000079 0.183913 0.217865 0.200102 1019.32 1035.21 1.000 alpha{1,2} 0.150711 0.000169 0.125941 0.176654 0.149880 1307.64 1404.32 1.000 alpha{3} 3.887641 0.857525 2.253907 5.698344 3.760210 1045.66 1049.04 1.000 pinvar{all} 0.351246 0.001044 0.285476 0.412218 0.352520 1325.13 1375.83 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -5860.349799 Model 2: PositiveSelection -5860.349962 Model 0: one-ratio -5964.484685 Model 3: discrete -5843.619141 Model 7: beta -5847.753856 Model 8: beta&w>1 -5844.011633 Model 0 vs 1 208.26977200000147 Model 2 vs 1 3.260000012232922E-4 Model 8 vs 7 7.484446000000389 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_MFS10-PA) Pr(w>1) post mean +- SE for w 296 E 0.994** 3.530 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_MFS10-PA) Pr(w>1) post mean +- SE for w 120 H 0.539 1.034 +- 0.534 296 E 0.990* 1.505 +- 0.147 314 A 0.765 1.298 +- 0.397 321 G 0.586 1.099 +- 0.508 324 E 0.676 1.199 +- 0.465 326 S 0.874 1.401 +- 0.313 337 S 0.573 1.034 +- 0.581 543 T 0.789 1.306 +- 0.421
>C1 MPPHKWTDESRDASCYYDPSTSSNSSASAERSDDEADDEREAFCSGERPL IRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESER EYIERSLQVQRLINQDLAEAEEEEGQDEVSLRAPPEEPIPWSSLLTSVPL WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTPP TRNSRSQRAooooooooooooo >C2 MPPHKWTDESRDASCYYEPSSSSNSSASADRSDDEADDEREAFCSGERPL IRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLINPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESER EYIERSLQVQRLINQDLAEPEEEEGEDEVSLRAPPEAPIPWSSLLTSVPL WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV GIACSALADWMLARRYISLLSSYKLWNTVASVVPSLGLIGIIYVGCDWVW VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTPP TRNSRSQRAooooooooooooo >C3 MPPHKWTDESRDASCYYEPSTSSNSSDSADRSDDEADDEREAFCSGERPL IRSSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNASVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISVTER EYIERSLHVQRLINPDLAEPEEEEEGQDDVNLRRPSEEPIPWSSLLTSVP LWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTAWF VGIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWV WVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLA PYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKTP PTRSSRSQRAoooooooooooo >C4 MPPHKWTDESRDASCYYEPSSSSNSSASAERSDDEADDEREAFCSGERPL IRTSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPVPHHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAQWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISASER EYIERCLQVQRLINQDLAEPEEEEAQDGVNLRTPSEEPIPWTSLLTSVPL WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTAWFV GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFLAP YVIGLIINHRETLTQWHLVFWLAAGLNIAGNFVYLIFASAEEQSWSKTPH TRNSRSQRAooooooooooooo >C5 MPPHKWTDESRDASCYYEPSASSNSSAASADRSDDEADDEREAFCSGERP LIRSGGAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPRPEPPHNGSDPSPQREGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDRPSDHPRISLSER EYIERSLHAQRLISQADLAEPEEDEDQDEVNLRRLPPAEEEPIPWTSLLS SVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLT SWFVGIACSALADWMLARRYISQLNSYKLWNTVASVVPSLGLIGIIYVGC DWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICG FLAPYVIGLIINHRETLTQWHVVFWLAAGLNIAGNFIYLIFASAEEQSWS KAPooooooooooooooooooo >C6 MPPHKWTDESRDASCYYEPSSSSNSSATADRSDDEADDEREAFCSGERPL IRSSAAGEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQREGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDRPSDHPRIATSER EYIERSLLAQRLINQELGDPEEEEEGEGEGEDGVGVRRRPSDDPIPWTSL LTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPY LTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYV GCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANI CGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQS WSKAPPTRISPSLRAooooooo >C7 MPPHKWTDESRDASCYYEPSSSSNSSATADRSDDEADDEREAFCSGERPL IRSSAAGEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPSDHPRISTSER EYIERSLLAQRLINQELVGPEEEEGQDQDEVGVRRPTDEPIPWSSLLTSV PLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSW FVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDW VWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFL APYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKA PPTRISRSLRAooooooooooo >C8 MPPHKWTDDSRDATCYYEPSSSSNSSASVERSDDEADDEREAFCSGERPL IRSSGAAEEHHGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISNSER EYIERSLQAQLLINQELIEPEEDEGQDQDEVNLRGRTDDPIPWSSLLTSV PLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSW FVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDW VWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFL APYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFASAEEQSWSKA PPTSISRSLRAooooooooooo >C9 MPPHKWTDESRDASCYYQDAAASRFRRPSSSSNSSASVDRSEDEADDERE AFCSGERPLIRSSDAAEVNEGCGPKTRHIFGFMGFLGFAVVYAMRVNLSV AIVAMVNQTAIPHSNSSVIDTDTCPLPAPNHNGSDPNPQKEGEFVWDEAT QGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLAA HWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGSN IGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSD HPRISTSEREYIERCLLAQRLISQEIAEPEEEEDEEEKDEVNLRRPQEEP IPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNAL LNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVASVVPSLGL IGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGIT NSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGNFIYLIFA SAEEQSWSKRPPTTRISRSLRA >C10 MPPHKWTDESRDASCYYEPSSSSNSSASVERSDDEADDEREAFCSGERPL IRSSGAAEVNDGCGPKTRHIFGFMGFLGFAVVYAMRVNLSVAIVAMVNQT AIPHSNSSVIDADTCPLPEPNHNGSNPNPQREGEFVWDEATQGLVLGSFF YGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLLTPLAAHWDLPLLVL VRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGSNIGTVISMPL AGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPSDHPRISASER EYIERCLRLVNQDRLVAEEQDQDEEQDGVNLRGPQEKPIPWSSLLTSVPL WAILLTQCGQGWAFYTQLTELPTYMSNILHFDIQSNALLNAVPYLTSWFV GIACSALADWMLARRYISLLNSYKLWNTVASVVPSLGLIGIIYVGCDWVW VTFMLAGVGSFGGAVYAGNQMNHIALSPRYAGTMYGITNSAANICGFMAP YVIGLIINHRETLTQWHLVFWLAAGLNIGGNFIYLIFASAEEQSWSKTPA PTTTRISRASLRAooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=10, Len=595 C1 MPPHKWTDESRDASCYYD---------PSTSSNS-SASAERSDDEADDER C2 MPPHKWTDESRDASCYYE---------PSSSSNS-SASADRSDDEADDER C3 MPPHKWTDESRDASCYYE---------PSTSSNS-SDSADRSDDEADDER C4 MPPHKWTDESRDASCYYE---------PSSSSNS-SASAERSDDEADDER C5 MPPHKWTDESRDASCYYE---------PSASSNSSAASADRSDDEADDER C6 MPPHKWTDESRDASCYYE---------PSSSSNS-SATADRSDDEADDER C7 MPPHKWTDESRDASCYYE---------PSSSSNS-SATADRSDDEADDER C8 MPPHKWTDDSRDATCYYE---------PSSSSNS-SASVERSDDEADDER C9 MPPHKWTDESRDASCYYQDAAASRFRRPSSSSNS-SASVDRSEDEADDER C10 MPPHKWTDESRDASCYYE---------PSSSSNS-SASVERSDDEADDER ********:****:***: **:**** : :.:**:******* C1 EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS C2 EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS C3 EAFCSGERPLIRSSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS C4 EAFCSGERPLIRTSGAAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS C5 EAFCSGERPLIR-SGGAEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS C6 EAFCSGERPLIRSSAAGEENHGCGPKTRHIFGLMGFLGFAVVYAMRVNLS C7 EAFCSGERPLIRSSAAGEENHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS C8 EAFCSGERPLIRSSGAAEEHHGCGPKTRHIFGFMGFLGFAVVYAMRVNLS C9 EAFCSGERPLIRSSDAAEVNEGCGPKTRHIFGFMGFLGFAVVYAMRVNLS C10 EAFCSGERPLIRSSGAAEVNDGCGPKTRHIFGFMGFLGFAVVYAMRVNLS ************ * ..* :.***********:***************** C1 VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA C2 VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA C3 VAIVAMVNQTAIPHSNASVIDTDTCPLPAPHHNGSDPNPQKEGEFVWDEA C4 VAIVAMVNQTAIPHSNSSVIDTDTCPLPVPHHNGSDPNPQKEGEFVWDEA C5 VAIVAMVNQTAIPHSNSSVIDTDTCPRPEPPHNGSDPSPQREGEFVWDEA C6 VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQREGEFVWDEA C7 VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEA C8 VAIVAMVNQTAIPHSNSSVIDTDTCPLPEPNHNGSDPNPQKEGEFVWDEA C9 VAIVAMVNQTAIPHSNSSVIDTDTCPLPAPNHNGSDPNPQKEGEFVWDEA C10 VAIVAMVNQTAIPHSNSSVIDADTCPLPEPNHNGSNPNPQREGEFVWDEA ****************:****:**** * * ****:*.**:********* C1 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTLITPLA C2 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLINPLA C3 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA C4 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA C5 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA C6 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA C7 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA C8 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAIFTLITPLA C9 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLITPLA C10 TQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLVTAIFTLLTPLA **************************************:**:***:.*** C1 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C2 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C3 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C4 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAQWIPPLERNKFAAIVYAGS C5 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C6 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C7 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C8 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGS C9 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGS C10 AHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAVVYAGS *******************************:************:***** C1 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C2 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C3 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C4 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C5 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDRPS C6 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDRPS C7 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPS C8 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C9 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPS C10 NIGTVISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFVAWMYLVYDKPS **************************************:********:** C1 DHPRISESEREYIERSLQVQRLINQ-DLAEAEEEE-----GQDEVSLRAP C2 DHPRISESEREYIERSLQVQRLINQ-DLAEPEEEE-----GEDEVSLRAP C3 DHPRISVTEREYIERSLHVQRLINP-DLAEPEEEEE----GQDDVNLRRP C4 DHPRISASEREYIERCLQVQRLINQ-DLAEPEEEE-----AQDGVNLRTP C5 DHPRISLSEREYIERSLHAQRLISQADLAEPEEDE-----DQDEVNLRRL C6 DHPRIATSEREYIERSLLAQRLINQ-ELGDPEEEEEGEGEGEDGVGVRRR C7 DHPRISTSEREYIERSLLAQRLINQ-ELVGPEEEE---GQDQDEVGVRR- C8 DHPRISNSEREYIERSLQAQLLINQ-ELIEPEEDE---GQDQDEVNLRGR C9 DHPRISTSEREYIERCLLAQRLISQ-EIAEPEEEED--EEEKDEVNLRRP C10 DHPRISASEREYIERCL---RLVNQ-DRLVAEEQDQ--DEEQDGVNLRGP *****: :*******.* *:. : .**:: :* *.:* C1 P---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C2 P---EAPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C3 S---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C4 S---EEPIPWTSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C5 PPAEEEPIPWTSLLSSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C6 PS--DDPIPWTSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C7 PT--DEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C8 T---DDPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C9 Q---EEPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF C10 Q---EKPIPWSSLLTSVPLWAILLTQCGQGWAFYTQLTELPTYMSNILHF : ****:***:*********************************** C1 DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLNSYKLWNTVAS C2 DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLSSYKLWNTVAS C3 DIQSNALLNAVPYLTAWFVGIACSALADWMLARRYISLLNSYKLWNTVAS C4 DIQSNALLNAVPYLTAWFVGIACSALADWMLARRYISLLNSYKLWNTVAS C5 DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISQLNSYKLWNTVAS C6 DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS C7 DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS C8 DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS C9 DIQSNALLNAVPYLTSWFVGIACSALADWMLAKRYISLLNSYKLWNTVAS C10 DIQSNALLNAVPYLTSWFVGIACSALADWMLARRYISLLNSYKLWNTVAS ***************:****************:**** *.********** C1 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C2 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C3 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C4 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C5 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C6 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C7 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C8 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C9 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA C10 VVPSLGLIGIIYVGCDWVWVTFMLAGVGSFGGAVYAGNQMNHIALSPRYA ************************************************** C1 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C2 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C3 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C4 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C5 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHVVFWLAAGLNIAGN C6 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C7 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C8 GTMYGITNSAANICGFLAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C9 GTMYGITNSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIAGN C10 GTMYGITNSAANICGFMAPYVIGLIINHRETLTQWHLVFWLAAGLNIGGN ****************:*******************:**********.** C1 FIYLIFASAEEQSWSKTPP---TRNSR-SQRAooooooooooooo C2 FIYLIFASAEEQSWSKTPP---TRNSR-SQRAooooooooooooo C3 FIYLIFASAEEQSWSKTPP---TRSSR-SQRAoooooooooooo- C4 FVYLIFASAEEQSWSKTPH---TRNSR-SQRAooooooooooooo C5 FIYLIFASAEEQSWSKAPo---ooooo-ooooooooooooo---- C6 FIYLIFASAEEQSWSKAPP---TRISP-SLRAooooooo------ C7 FIYLIFASAEEQSWSKAPP---TRISR-SLRAooooooooooo-- C8 FIYLIFASAEEQSWSKAPP---TSISR-SLRAooooooooooo-- C9 FIYLIFASAEEQSWSKRPP--TTRISR-SLRA------------- C10 FIYLIFASAEEQSWSKTPAPTTTRISRASLRAooooooooo---- *:************** * PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 572 type PROTEIN Struct Unchecked Input File /opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 572 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/305/MFS10-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/305/MFS10