--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Sat Nov 12 06:33:31 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/aay-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -2091.86         -2109.68
2      -2092.05         -2104.31
--------------------------------------
TOTAL    -2091.95         -2108.99
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.595119    0.005995    0.450219    0.746304    0.588543   1163.59   1262.74    1.000
r(A<->C){all}   0.124925    0.001025    0.061693    0.185846    0.123012    789.39    934.88    1.001
r(A<->G){all}   0.249220    0.001852    0.169875    0.334516    0.246963    773.03    873.93    1.000
r(A<->T){all}   0.080162    0.001108    0.020768    0.144338    0.077337    706.00    781.90    1.001
r(C<->G){all}   0.056181    0.000346    0.023007    0.094871    0.054047   1019.80   1023.56    1.000
r(C<->T){all}   0.415210    0.002813    0.312582    0.522440    0.414621    526.58    648.06    1.001
r(G<->T){all}   0.074302    0.000575    0.029641    0.121435    0.072112   1128.21   1172.40    1.000
pi(A){all}      0.246813    0.000209    0.218702    0.274661    0.246554   1062.07   1140.81    1.001
pi(C){all}      0.265360    0.000211    0.236745    0.292729    0.265356   1175.72   1252.27    1.000
pi(G){all}      0.283722    0.000227    0.254777    0.313835    0.283485   1225.27   1251.85    1.000
pi(T){all}      0.204105    0.000179    0.178155    0.230790    0.203830   1181.20   1229.08    1.000
alpha{1,2}      0.063021    0.001241    0.000142    0.118538    0.065143   1195.55   1229.54    1.000
alpha{3}        2.634940    0.708362    1.188567    4.303611    2.522565   1094.45   1297.72    1.000
pinvar{all}     0.431065    0.003322    0.320603    0.541641    0.431538   1272.84   1313.87    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-1946.043099
Model 2: PositiveSelection	-1946.043099
Model 0: one-ratio	-1962.638927
Model 3: discrete	-1945.150938
Model 7: beta	-1945.156686
Model 8: beta&w>1	-1945.156786


Model 0 vs 1	33.191655999999966

Model 2 vs 1	0.0

Model 8 vs 7	1.999999999497959E-4
>C1
MSGSVLSLARPAAATNGHNLLTKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTS
RSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQo
>C2
MSGSVLSLARPAAATNGHNLLAKQLNCNGNGTTDGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFFSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQPTS
RSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQo
>C3
MSGSVLSLARPAAATNGHNLLAKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQPTS
RSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQo
>C4
MSGSVLSLARPAAAANGHNLLAKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQQQVRDFIEERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQPTS
RSGGKAEAIALIRKENSDDALITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQo
>C5
MSGSVLSLARPAAATNGHNLLAKQLNCNGNGTTGGAAKTTVASAITPPKQ
PQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMG
GAMTFQDALKIRLNIIRPTQRQVRDFIQERPSTLSKNVKRFVSHLKAEGK
QVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQPTS
RSGGKAEAIALIRKENNEDALITMIGDGATDLEAVPPANYFIGFGGNVVR
PEVYRRAQYYVTDFEQLMGQo
>C6
MSGSVLSLARPAAAAATNGHNLLAKQLNCNGNGTAGVAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPSQQQVQDFIRERPSTLSKNVRRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKQENSGDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMo
>C7
MSGSVLSLARPAAATANGHNLLAKQLNCNGNGTSGGAAKTTVASAITPPK
QPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAM
GGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLTKNVKRFVAHLKAEG
KQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQPT
SRSGGKAEAIALIKKENNVDSLITMIGDGATDLEAVPPANYFIGFGGNVV
RPEVYRRAQYYVTDFEQLMGQ
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=273 

C1              MSGSVLSLARPAAAT--NGHNLLTKQLNCNGNGTTGGAAKTTVASAITPP
C2              MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTDGAAKTTVASAITPP
C3              MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
C4              MSGSVLSLARPAAAA--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
C5              MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
C6              MSGSVLSLARPAAAAATNGHNLLAKQLNCNGNGTAGVAAKTTVASAITPP
C7              MSGSVLSLARPAAATA-NGHNLLAKQLNCNGNGTSGGAAKTTVASAITPP
                **************:  ******:**********:. *************

C1              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C2              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C3              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C4              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C5              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C6              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
C7              KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
                **************************************************

C1              MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
C2              MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFFSHLKAE
C3              MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
C4              MGGAMTFQDALKIRLNIIRPTQQQVRDFIEERPSTLSKNVKRFVSHLKAE
C5              MGGAMTFQDALKIRLNIIRPTQRQVRDFIQERPSTLSKNVKRFVSHLKAE
C6              MGGAMTFQDALKIRLNIIRPSQQQVQDFIRERPSTLSKNVRRFVAHLKAE
C7              MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLTKNVKRFVAHLKAE
                ********************:*:**:***.******:***:**.:*****

C1              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQP
C2              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
C3              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
C4              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
C5              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
C6              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
C7              GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
                ****************************************:******.**

C1              TSRSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNV
C2              TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
C3              TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
C4              TSRSGGKAEAIALIRKENSDDALITMIGDGATDLEAVPPANYFIGFGGNV
C5              TSRSGGKAEAIALIRKENNEDALITMIGDGATDLEAVPPANYFIGFGGNV
C6              TSRSGGKAEAIALIKQENSGDSLITMIGDGATDLEAVPPANYFIGFGGNV
C7              TSRSGGKAEAIALIKKENNVDSLITMIGDGATDLEAVPPANYFIGFGGNV
                **************::**. *:****************************

C1              VRPEVYRRAQYYVTDFEQLMGQo
C2              VRPEVYRRAQYYVTDFEQLMGQo
C3              VRPEVYRRAQYYVTDFEQLMGQo
C4              VRPEVYRRAQYYVTDFEQLMGQo
C5              VRPEVYRRAQYYVTDFEQLMGQo
C6              VRPEVYRRAQYYVTDFEQLMo--
C7              VRPEVYRRAQYYVTDFEQLMGQ-
                ********************   




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 s       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  271 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  271 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11550]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [11550]--->[11536]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/2/aay-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.401 Mb, Max= 30.799 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MSGSVLSLARPAAAT--NGHNLLTKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQP
TSRSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C2
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTDGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFFSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C3
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C4
MSGSVLSLARPAAAA--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIEERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENSDDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C5
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQRQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENNEDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C6
MSGSVLSLARPAAAAATNGHNLLAKQLNCNGNGTAGVAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPSQQQVQDFIRERPSTLSKNVRRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKQENSGDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMo--
>C7
MSGSVLSLARPAAATA-NGHNLLAKQLNCNGNGTSGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLTKNVKRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKKENNVDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ-

FORMAT of file /tmp/tmp2071150447995365783aln Not Supported[FATAL:T-COFFEE]
>C1
MSGSVLSLARPAAAT--NGHNLLTKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQP
TSRSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C2
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTDGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFFSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C3
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C4
MSGSVLSLARPAAAA--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIEERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENSDDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C5
MSGSVLSLARPAAAT--NGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQRQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENNEDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQo
>C6
MSGSVLSLARPAAAAATNGHNLLAKQLNCNGNGTAGVAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPSQQQVQDFIRERPSTLSKNVRRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKQENSGDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMo--
>C7
MSGSVLSLARPAAATA-NGHNLLAKQLNCNGNGTSGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLTKNVKRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKKENNVDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ-
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:273 S:99 BS:273
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES 
BOT	    0    1	 98.15 C1	 C2	 98.15
TOP	    1    0	 98.15 C2	 C1	 98.15
BOT	    0    2	 98.89 C1	 C3	 98.89
TOP	    2    0	 98.89 C3	 C1	 98.89
BOT	    0    3	 98.15 C1	 C4	 98.15
TOP	    3    0	 98.15 C4	 C1	 98.15
BOT	    0    4	 97.79 C1	 C5	 97.79
TOP	    4    0	 97.79 C5	 C1	 97.79
BOT	    0    5	 94.80 C1	 C6	 94.80
TOP	    5    0	 94.80 C6	 C1	 94.80
BOT	    0    6	 97.04 C1	 C7	 97.04
TOP	    6    0	 97.04 C7	 C1	 97.04
BOT	    1    2	 99.26 C2	 C3	 99.26
TOP	    2    1	 99.26 C3	 C2	 99.26
BOT	    1    3	 97.05 C2	 C4	 97.05
TOP	    3    1	 97.05 C4	 C2	 97.05
BOT	    1    4	 97.42 C2	 C5	 97.42
TOP	    4    1	 97.42 C5	 C2	 97.42
BOT	    1    5	 93.68 C2	 C6	 93.68
TOP	    5    1	 93.68 C6	 C2	 93.68
BOT	    1    6	 96.67 C2	 C7	 96.67
TOP	    6    1	 96.67 C7	 C2	 96.67
BOT	    2    3	 97.79 C3	 C4	 97.79
TOP	    3    2	 97.79 C4	 C3	 97.79
BOT	    2    4	 98.15 C3	 C5	 98.15
TOP	    4    2	 98.15 C5	 C3	 98.15
BOT	    2    5	 94.42 C3	 C6	 94.42
TOP	    5    2	 94.42 C6	 C3	 94.42
BOT	    2    6	 97.41 C3	 C7	 97.41
TOP	    6    2	 97.41 C7	 C3	 97.41
BOT	    3    4	 98.15 C4	 C5	 98.15
TOP	    4    3	 98.15 C5	 C4	 98.15
BOT	    3    5	 95.17 C4	 C6	 95.17
TOP	    5    3	 95.17 C6	 C4	 95.17
BOT	    3    6	 96.30 C4	 C7	 96.30
TOP	    6    3	 96.30 C7	 C4	 96.30
BOT	    4    5	 94.05 C5	 C6	 94.05
TOP	    5    4	 94.05 C6	 C5	 94.05
BOT	    4    6	 97.04 C5	 C7	 97.04
TOP	    6    4	 97.04 C7	 C5	 97.04
BOT	    5    6	 95.56 C6	 C7	 95.56
TOP	    6    5	 95.56 C7	 C6	 95.56
AVG	 0	 C1	  *	 97.47
AVG	 1	 C2	  *	 97.04
AVG	 2	 C3	  *	 97.65
AVG	 3	 C4	  *	 97.10
AVG	 4	 C5	  *	 97.10
AVG	 5	 C6	  *	 94.61
AVG	 6	 C7	  *	 96.67
TOT	 TOT	  *	 96.81
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
C2              ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
C3              ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
C4              ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCGCA-----
C5              ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
C6              ATGAGCGGTTCCGTTTTAAGTTTGGCGCGTCCTGCAGCCGCAGCAGCCAC
C7              ATGAGCGGTTCCGTTTTGAGTTTGGCCCGTCCTGCAGCAGCCACAGCA--
                **************:**.******** ***********.**..**     

C1              -AATGGCCATAATCTGCTGACCAAACAGCTGAATTGCAATGGCAATGGCA
C2              -AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
C3              -AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
C4              -AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
C5              -AATGGCCATAATCTGCTGGCCAAACAGCTGAATTGCAATGGCAATGGCA
C6              AAATGGCCATAATCTTCTGGCCAAACAGCTAAATTGCAATGGCAATGGCA
C7              -AATGGCCATAATCTTCTGGCCAAACAGCTCAACTGCAATGGCAATGGCA
                 ************** ***.****.***** ** ****************

C1              CCACCGGTGGCGCGGCGAAAACCACTGTGGCCTCGGCCATAACACCGCCC
C2              CCACCGATGGCGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
C3              CCACCGGTGGCGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
C4              CCACCGGTGGGGCGGCCAAAACCACTGTGGCCTCGGCCATAACGCCGCCC
C5              CCACCGGTGGGGCTGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
C6              CCGCAGGCGTGGCGGCCAAAACCACAGTGGCCTCGGCCATAACACCACCC
C7              CCTCCGGAGGAGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCACCC
                ** *.*. *  ** ** ********:*****************.**.***

C1              AAGCAGCCCCAGTTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
C2              AAGCAGCCCCAGCTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
C3              AAGCAGCCCCAGCTGGCGGCCAAGGTCATCCAGCAGTCACAGATCGTCTG
C4              AAGCAGCCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
C5              AAGCAGCCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
C6              AAACAACCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTTTG
C7              AAACAGCCTCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTTTG
                **.**.** **. *************************.******** **

C1              TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
C2              TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
C3              TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
C4              TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
C5              TTTCGATGTGGATTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
C6              CTTCGATGTCGATTCAACGGTGATTTGCGAGGAGGGCATCGACGAGCTGG
C7              TTTCGATGTGGATTCCACAGTGATTTGCGAGGAGGGTATCGATGAGTTGG
                 ******** ** **.**.***************** ***** **. ***

C1              CCGAATATTGTGGCAAGGGGAGCGAGGTGGCTCGCGTTACCAAGGAGGCG
C2              CCGAATATTGTGGCAAGGGAAGTGAGGTGGCTCGCGTTACCAAGGAGGCG
C3              CCGAATATTGCGGCAAGGGGAGCGAGGTGGCTCGCGTTACCAAGGAGGCG
C4              CCGAGTATTGTGGCAAGGGTAGCGAGGTGGCGCGCGTCACCAAGGAGGCG
C5              CCGAATATTGCGGCAAGGGTAGCGAGGTGGCCCGCGTCACCAAGGAGGCG
C6              CCGAATATTGCGGCAAGGGCAGCGAGGTGGCGCGTGTCACCAAGGAGGCG
C7              CCGAGTATTGCGGCAAAGGAAGTGAAGTGGCGCGTGTCACCAAGGAGGCG
                ****.***** *****.** ** **.***** ** ** ************

C1              ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATTCGCTTGAACAT
C2              ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGCTTGAACAT
C3              ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGCTTGAACAT
C4              ATGGGCGGTGCCATGACCTTCCAGGATGCCCTTAAAATCCGCTTGAACAT
C5              ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGATTGAACAT
C6              ATGGGCGGGGCCATGACCTTCCAGGATGCCCTCAAAATCCGGCTGAACAT
C7              ATGGGCGGTGCCATGACCTTTCAGGATGCCCTTAAAATCAGATTGAACAT
                ******** *********** *********** ***** .*  *******

C1              CATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAGGAGCGACCCA
C2              CATACGACCGACACAGCAGCAAGTGAGGGATTTTATCCAGGAGCGACCCA
C3              CATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAGGAGCGACCCA
C4              CATCAGGCCTACACAGCAGCAAGTGAGGGATTTCATTGAGGAGCGACCCA
C5              CATTAGGCCCACACAGCGGCAAGTGAGGGATTTCATTCAAGAGCGACCCA
C6              CATAAGGCCCTCGCAGCAGCAAGTGCAGGATTTCATTCGCGAACGACCCA
C7              CATCCGGCCCACTCAACAGCAAGTAAGGGATTTCATCCAAGAGCGGCCCA
                *** .*.** :* **.*.******...****** **  . **.**.****

C1              GTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTTGAAGGCGGAG
C2              GTACACTGAGCAAAAACGTGAAACGTTTCTTCAGCCATTTGAAGGCGGAG
C3              GTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTTGAAGGCGGAG
C4              GTACACTGAGCAAAAACGTCAAGCGTTTCGTGAGCCACTTGAAGGCGGAG
C5              GTACACTGAGCAAAAACGTGAAGCGTTTCGTGAGCCACTTGAAGGCGGAA
C6              GTACACTGAGCAAAAACGTGCGGCGTTTCGTGGCCCACCTGAAGGCGGAG
C7              GCACACTGACCAAAAACGTCAAGCGTTTCGTTGCCCACTTGAAGGCGGAG
                * ******* ********* ...****** * . ***  **********.

C1              GGAAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
C2              GGCAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
C3              GGCAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
C4              GGCAAACAGGTTTATTTGATATCCGGCGGATTCGATTGCCTAATTGCGCC
C5              GGCAAACAGGTTTATTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
C6              GGCAAACAGGTTTATTTGATCTCCGGCGGATTCGATTGTCTCATCGCTCC
C7              GGCAAACAAGTATATTTGATCTCCGGCGGTTTCGATTGCCTCATAGCACC
                **.*****.**:** *****.********:******** **.** ** **

C1              CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
C2              CGTGGCCAATGAATTGGGTATTCCCCTGAAAAATGTCTATGCCAACAAGA
C3              CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
C4              CGTGGCCAATGAATTGGGAATTCCGCTGAAAAACGTGTATGCCAACAAGA
C5              CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
C6              GGTGGCCAATGAACTGGGCATTCCCCTGAAAAATGTCTATGCCAACAAGA
C7              AGTGGCCAACGAATTGGGTATTCCCCTGAAAAATGTTTATGCCAACAAGA
                 ******** *** **** ***** ******** ** *************

C1              TGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGATATCAACCAGCCC
C2              TGCTTTTCGATTATCTGGGCGACTATGATAGCTTTGATATCAACCAGCCC
C3              TGCTTTTCGATTATCTGGGCGACTACGATAGCTTTGATATCAACCAGCCC
C4              TGCTCTTTGATTATCTGGGCGAATACGATAGCTTTGATATCAGCCAGCCG
C5              TGCTGTTTGATTATCTAGGCGAATACGATAGCTTTGATATCAGCCAGCCC
C6              TGCTGTTCGACTATTTGGGCGAATACGATAGCTTTGACATCACACAGCCC
C7              TGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGACATCACCCAGCCC
                **** ** ** *** *.*****.** *********** **** .***** 

C1              ACTTCGCGTTCCGGCGGAAAGGCAGAGGCTATCGCCCTGATAAGGAAGGA
C2              ACTTCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
C3              ACTTCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
C4              ACATCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
C5              ACTTCTCGTTCCGGCGGCAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
C6              ACCTCGCGTTCCGGTGGAAAGGCCGAGGCCATCGCCCTGATAAAGCAGGA
C7              ACATCACGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAAGAAGGA
                ** ** ******** **.*****.***** *************.*.****

C1              GAATAGCGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
C2              GAATAACGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
C3              GAATAACGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
C4              GAATAGCGACGATGCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
C5              GAATAACGAAGACGCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
C6              GAACAGCGGGGATTCCCTCATCACAATGATCGGCGATGGAGCCACCGATC
C7              GAATAATGTCGATTCTCTGATCACCATGATCGGCGATGGAGCCACCGATC
                *** *. *  **  * ** *****.*************************

C1              TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
C2              TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
C3              TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
C4              TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
C5              TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTTGGTGGCAATGTC
C6              TGGAGGCCGTACCGCCGGCCAACTATTTCATTGGCTTTGGGGGAAATGTT
C7              TTGAGGCCGTACCGCCAGCTAACTATTTTATTGGATTTGGTGGCAATGTA
                * **************.** ***** ** **:** ** ** **.***** 

C1              GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGATTTTGA
C2              GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGACTTTGA
C3              GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGACTTTGA
C4              GTGCGGCCGGAGGTCTATCGCCGGGCGCAGTATTACGTAACGGACTTTGA
C5              GTGCGGCCGGAGGTCTATCGCCGAGCCCAGTATTACGTAACGGACTTTGA
C6              GTGCGACCGGAGGTCTATCGCCGGGCCCAGTATTACGTAACGGACTTTGA
C7              GTACGACCGGAGGTCTATCGCCGGGCCCAGTATTACGTAACGGACTTTGA
                **.**.***************** ** ***************** *****

C1              GCAGCTGATGGGGCAG---
C2              GCAGCTGATGGGGCAG---
C3              GCAGCTGATGGGGCAG---
C4              GCAGCTGATGGGGCAG---
C5              GCAGCTGATGGGGCAG---
C6              GCAGCTGATG---------
C7              GCAGCTGATGGGGCAG---
                **********         



>C1
ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
-AATGGCCATAATCTGCTGACCAAACAGCTGAATTGCAATGGCAATGGCA
CCACCGGTGGCGCGGCGAAAACCACTGTGGCCTCGGCCATAACACCGCCC
AAGCAGCCCCAGTTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
CCGAATATTGTGGCAAGGGGAGCGAGGTGGCTCGCGTTACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATTCGCTTGAACAT
CATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAGGAGCGACCCA
GTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTTGAAGGCGGAG
GGAAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
TGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGATATCAACCAGCCC
ACTTCGCGTTCCGGCGGAAAGGCAGAGGCTATCGCCCTGATAAGGAAGGA
GAATAGCGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGATTTTGA
GCAGCTGATGGGGCAG---
>C2
ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
-AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
CCACCGATGGCGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
AAGCAGCCCCAGCTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
CCGAATATTGTGGCAAGGGAAGTGAGGTGGCTCGCGTTACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGCTTGAACAT
CATACGACCGACACAGCAGCAAGTGAGGGATTTTATCCAGGAGCGACCCA
GTACACTGAGCAAAAACGTGAAACGTTTCTTCAGCCATTTGAAGGCGGAG
GGCAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
CGTGGCCAATGAATTGGGTATTCCCCTGAAAAATGTCTATGCCAACAAGA
TGCTTTTCGATTATCTGGGCGACTATGATAGCTTTGATATCAACCAGCCC
ACTTCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
GAATAACGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGACTTTGA
GCAGCTGATGGGGCAG---
>C3
ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
-AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
CCACCGGTGGCGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
AAGCAGCCCCAGCTGGCGGCCAAGGTCATCCAGCAGTCACAGATCGTCTG
TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
CCGAATATTGCGGCAAGGGGAGCGAGGTGGCTCGCGTTACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGCTTGAACAT
CATACGGCCGACACAGCAGCAAGTGAGGGATTTCATCCAGGAGCGACCCA
GTACACTGAGCAAAAACGTGAAGCGTTTCGTCAGCCATTTGAAGGCGGAG
GGCAAACAGGTTTACTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
TGCTTTTCGATTATCTGGGCGACTACGATAGCTTTGATATCAACCAGCCC
ACTTCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
GAATAACGACGATTCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
GTGCGGCCGGAGGTCTATCGCCGTGCACAGTATTACGTAACGGACTTTGA
GCAGCTGATGGGGCAG---
>C4
ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCGCA-----
-AATGGCCATAATCTGCTGGCCAAGCAGCTGAATTGCAATGGCAATGGCA
CCACCGGTGGGGCGGCCAAAACCACTGTGGCCTCGGCCATAACGCCGCCC
AAGCAGCCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
TTTCGATGTGGACTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
CCGAGTATTGTGGCAAGGGTAGCGAGGTGGCGCGCGTCACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTCCAGGATGCCCTTAAAATCCGCTTGAACAT
CATCAGGCCTACACAGCAGCAAGTGAGGGATTTCATTGAGGAGCGACCCA
GTACACTGAGCAAAAACGTCAAGCGTTTCGTGAGCCACTTGAAGGCGGAG
GGCAAACAGGTTTATTTGATATCCGGCGGATTCGATTGCCTAATTGCGCC
CGTGGCCAATGAATTGGGAATTCCGCTGAAAAACGTGTATGCCAACAAGA
TGCTCTTTGATTATCTGGGCGAATACGATAGCTTTGATATCAGCCAGCCG
ACATCGCGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
GAATAGCGACGATGCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTCGGTGGCAATGTC
GTGCGGCCGGAGGTCTATCGCCGGGCGCAGTATTACGTAACGGACTTTGA
GCAGCTGATGGGGCAG---
>C5
ATGAGCGGTTCCGTATTGAGTTTGGCGCGTCCTGCAGCAGCCACA-----
-AATGGCCATAATCTGCTGGCCAAACAGCTGAATTGCAATGGCAATGGCA
CCACCGGTGGGGCTGCCAAAACCACTGTGGCCTCGGCCATAACACCGCCC
AAGCAGCCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTCTG
TTTCGATGTGGATTCCACGGTGATTTGCGAGGAGGGCATCGACGAACTGG
CCGAATATTGCGGCAAGGGTAGCGAGGTGGCCCGCGTCACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTCCAGGATGCCCTCAAAATCCGATTGAACAT
CATTAGGCCCACACAGCGGCAAGTGAGGGATTTCATTCAAGAGCGACCCA
GTACACTGAGCAAAAACGTGAAGCGTTTCGTGAGCCACTTGAAGGCGGAA
GGCAAACAGGTTTATTTGATCTCCGGCGGATTCGATTGCCTAATTGCGCC
CGTGGCCAATGAATTGGGTATTCCCCTGAAAAACGTCTATGCCAACAAGA
TGCTGTTTGATTATCTAGGCGAATACGATAGCTTTGATATCAGCCAGCCC
ACTTCTCGTTCCGGCGGCAAGGCAGAGGCCATCGCCCTGATAAGGAAGGA
GAATAACGAAGACGCCCTAATCACCATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCAGCCAACTACTTTATAGGTTTTGGTGGCAATGTC
GTGCGGCCGGAGGTCTATCGCCGAGCCCAGTATTACGTAACGGACTTTGA
GCAGCTGATGGGGCAG---
>C6
ATGAGCGGTTCCGTTTTAAGTTTGGCGCGTCCTGCAGCCGCAGCAGCCAC
AAATGGCCATAATCTTCTGGCCAAACAGCTAAATTGCAATGGCAATGGCA
CCGCAGGCGTGGCGGCCAAAACCACAGTGGCCTCGGCCATAACACCACCC
AAACAACCCCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTTTG
CTTCGATGTCGATTCAACGGTGATTTGCGAGGAGGGCATCGACGAGCTGG
CCGAATATTGCGGCAAGGGCAGCGAGGTGGCGCGTGTCACCAAGGAGGCG
ATGGGCGGGGCCATGACCTTCCAGGATGCCCTCAAAATCCGGCTGAACAT
CATAAGGCCCTCGCAGCAGCAAGTGCAGGATTTCATTCGCGAACGACCCA
GTACACTGAGCAAAAACGTGCGGCGTTTCGTGGCCCACCTGAAGGCGGAG
GGCAAACAGGTTTATTTGATCTCCGGCGGATTCGATTGTCTCATCGCTCC
GGTGGCCAATGAACTGGGCATTCCCCTGAAAAATGTCTATGCCAACAAGA
TGCTGTTCGACTATTTGGGCGAATACGATAGCTTTGACATCACACAGCCC
ACCTCGCGTTCCGGTGGAAAGGCCGAGGCCATCGCCCTGATAAAGCAGGA
GAACAGCGGGGATTCCCTCATCACAATGATCGGCGATGGAGCCACCGATC
TGGAGGCCGTACCGCCGGCCAACTATTTCATTGGCTTTGGGGGAAATGTT
GTGCGACCGGAGGTCTATCGCCGGGCCCAGTATTACGTAACGGACTTTGA
GCAGCTGATG---------
>C7
ATGAGCGGTTCCGTTTTGAGTTTGGCCCGTCCTGCAGCAGCCACAGCA--
-AATGGCCATAATCTTCTGGCCAAACAGCTCAACTGCAATGGCAATGGCA
CCTCCGGAGGAGCGGCCAAAACCACTGTGGCCTCGGCCATAACACCACCC
AAACAGCCTCAATTGGCGGCCAAGGTCATCCAGCAGTCGCAGATCGTTTG
TTTCGATGTGGATTCCACAGTGATTTGCGAGGAGGGTATCGATGAGTTGG
CCGAGTATTGCGGCAAAGGAAGTGAAGTGGCGCGTGTCACCAAGGAGGCG
ATGGGCGGTGCCATGACCTTTCAGGATGCCCTTAAAATCAGATTGAACAT
CATCCGGCCCACTCAACAGCAAGTAAGGGATTTCATCCAAGAGCGGCCCA
GCACACTGACCAAAAACGTCAAGCGTTTCGTTGCCCACTTGAAGGCGGAG
GGCAAACAAGTATATTTGATCTCCGGCGGTTTCGATTGCCTCATAGCACC
AGTGGCCAACGAATTGGGTATTCCCCTGAAAAATGTTTATGCCAACAAGA
TGCTGTTCGATTATTTGGGCGAATACGATAGCTTTGACATCACCCAGCCC
ACATCACGTTCCGGCGGAAAGGCAGAGGCCATCGCCCTGATAAAGAAGGA
GAATAATGTCGATTCTCTGATCACCATGATCGGCGATGGAGCCACCGATC
TTGAGGCCGTACCGCCAGCTAACTATTTTATTGGATTTGGTGGCAATGTA
GTACGACCGGAGGTCTATCGCCGGGCCCAGTATTACGTAACGGACTTTGA
GCAGCTGATGGGGCAG---
>C1
MSGSVLSLARPAAATooNGHNLLTKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQP
TSRSGGKAEAIALIRKENSDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ
>C2
MSGSVLSLARPAAATooNGHNLLAKQLNCNGNGTTDGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFFSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ
>C3
MSGSVLSLARPAAATooNGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGDYDSFDINQP
TSRSGGKAEAIALIRKENNDDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ
>C4
MSGSVLSLARPAAAAooNGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIEERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENSDDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ
>C5
MSGSVLSLARPAAATooNGHNLLAKQLNCNGNGTTGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQRQVRDFIQERPSTLSKNVKRFVSHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDISQP
TSRSGGKAEAIALIRKENNEDALITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ
>C6
MSGSVLSLARPAAAAATNGHNLLAKQLNCNGNGTAGVAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPSQQQVQDFIRERPSTLSKNVRRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKQENSGDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMoo
>C7
MSGSVLSLARPAAATAoNGHNLLAKQLNCNGNGTSGGAAKTTVASAITPP
KQPQLAAKVIQQSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEA
MGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLTKNVKRFVAHLKAE
GKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDITQP
TSRSGGKAEAIALIKKENNVDSLITMIGDGATDLEAVPPANYFIGFGGNV
VRPEVYRRAQYYVTDFEQLMGQ


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 7 taxa and 819 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Taxon 6 -> C6
      Taxon 7 -> C7
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1478931922
      Setting output file names to "/opt/ADOPS/2/aay-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 1667868455
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 6841426400
      Seed = 1330005351
      Swapseed = 1478931922
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 24 unique site patterns
      Division 2 has 20 unique site patterns
      Division 3 has 82 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -2772.700399 -- -24.557203
         Chain 2 -- -2756.792276 -- -24.557203
         Chain 3 -- -2662.463994 -- -24.557203
         Chain 4 -- -2676.451304 -- -24.557203

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -2656.019266 -- -24.557203
         Chain 2 -- -2773.041081 -- -24.557203
         Chain 3 -- -2775.776150 -- -24.557203
         Chain 4 -- -2738.528634 -- -24.557203


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-2772.700] (-2756.792) (-2662.464) (-2676.451) * [-2656.019] (-2773.041) (-2775.776) (-2738.529) 
        500 -- (-2171.069) (-2171.619) [-2158.128] (-2183.259) * (-2168.128) [-2175.349] (-2176.585) (-2178.174) -- 0:33:19
       1000 -- (-2155.786) (-2155.283) [-2129.546] (-2159.551) * (-2160.806) (-2157.994) [-2158.637] (-2173.967) -- 0:16:39
       1500 -- (-2127.557) (-2135.685) [-2115.415] (-2143.849) * (-2153.445) (-2140.611) [-2120.956] (-2160.733) -- 0:11:05
       2000 -- (-2101.202) (-2105.405) [-2106.728] (-2147.547) * (-2141.502) (-2125.147) [-2102.957] (-2132.078) -- 0:08:19
       2500 -- (-2102.949) [-2093.014] (-2104.156) (-2120.724) * (-2122.139) [-2098.209] (-2097.775) (-2102.265) -- 0:06:39
       3000 -- (-2096.944) (-2094.132) (-2103.999) [-2099.143] * (-2100.389) (-2102.771) (-2095.336) [-2098.338] -- 0:05:32
       3500 -- (-2100.383) (-2097.597) [-2093.609] (-2098.883) * (-2094.917) (-2099.110) [-2095.033] (-2093.339) -- 0:04:44
       4000 -- (-2097.106) [-2099.520] (-2099.519) (-2099.091) * [-2095.199] (-2103.357) (-2099.833) (-2100.798) -- 0:08:18
       4500 -- (-2105.811) (-2099.663) [-2093.524] (-2102.876) * (-2096.953) (-2100.523) (-2100.620) [-2096.386] -- 0:07:22
       5000 -- (-2104.008) (-2100.515) (-2096.321) [-2098.013] * [-2090.295] (-2101.599) (-2093.355) (-2109.137) -- 0:06:38

      Average standard deviation of split frequencies: 0.031427

       5500 -- (-2097.035) (-2094.194) (-2095.126) [-2090.369] * [-2090.953] (-2113.597) (-2100.797) (-2094.899) -- 0:06:01
       6000 -- (-2095.595) (-2095.876) (-2104.384) [-2092.415] * (-2096.763) [-2097.957] (-2093.928) (-2100.010) -- 0:05:31
       6500 -- (-2095.103) [-2093.703] (-2098.016) (-2089.487) * (-2096.855) (-2099.030) [-2099.152] (-2096.710) -- 0:05:05
       7000 -- [-2092.286] (-2093.870) (-2094.890) (-2102.838) * (-2100.171) (-2097.162) [-2104.241] (-2096.076) -- 0:07:05
       7500 -- (-2098.163) [-2090.084] (-2094.679) (-2093.066) * (-2094.741) [-2092.418] (-2106.679) (-2098.590) -- 0:06:37
       8000 -- (-2095.253) [-2094.760] (-2097.348) (-2095.988) * (-2099.947) [-2094.720] (-2099.484) (-2096.621) -- 0:06:12
       8500 -- (-2098.009) [-2096.544] (-2104.876) (-2106.361) * (-2092.676) (-2090.691) (-2107.998) [-2098.689] -- 0:05:49
       9000 -- (-2096.767) (-2100.157) (-2096.047) [-2097.651] * [-2095.059] (-2093.737) (-2102.803) (-2099.263) -- 0:05:30
       9500 -- (-2097.702) (-2101.115) (-2097.194) [-2094.488] * (-2091.391) [-2099.147] (-2102.874) (-2093.950) -- 0:05:12
      10000 -- (-2098.926) [-2093.547] (-2099.096) (-2096.190) * (-2097.917) (-2096.589) (-2094.479) [-2092.214] -- 0:04:57

      Average standard deviation of split frequencies: 0.033146

      10500 -- (-2097.670) [-2094.844] (-2095.796) (-2107.806) * (-2096.513) (-2099.560) [-2102.529] (-2092.367) -- 0:06:16
      11000 -- (-2097.756) (-2104.877) [-2092.146] (-2104.855) * (-2101.000) (-2095.381) (-2099.849) [-2094.826] -- 0:05:59
      11500 -- (-2093.964) (-2106.041) (-2095.837) [-2094.735] * (-2103.299) (-2095.611) (-2090.864) [-2096.033] -- 0:05:43
      12000 -- (-2094.542) (-2099.026) [-2097.031] (-2093.007) * (-2096.202) [-2093.319] (-2093.711) (-2100.752) -- 0:05:29
      12500 -- (-2095.708) (-2100.352) [-2097.227] (-2096.918) * (-2094.455) [-2097.245] (-2091.875) (-2099.985) -- 0:05:16
      13000 -- [-2099.230] (-2099.746) (-2090.963) (-2095.324) * (-2101.065) [-2095.661] (-2095.820) (-2098.193) -- 0:05:03
      13500 -- (-2097.387) (-2096.482) [-2099.142] (-2097.548) * (-2093.945) (-2097.169) [-2104.664] (-2099.796) -- 0:06:05
      14000 -- [-2095.838] (-2094.455) (-2102.965) (-2092.651) * [-2095.765] (-2094.809) (-2103.958) (-2092.591) -- 0:05:52
      14500 -- [-2098.103] (-2101.345) (-2099.043) (-2099.162) * (-2093.263) (-2102.975) [-2102.549] (-2099.335) -- 0:05:39
      15000 -- (-2104.023) (-2094.721) (-2101.775) [-2092.449] * (-2100.432) (-2103.029) [-2102.292] (-2103.537) -- 0:05:28

      Average standard deviation of split frequencies: 0.014731

      15500 -- (-2100.775) [-2093.195] (-2093.953) (-2092.679) * (-2098.139) [-2091.588] (-2099.865) (-2096.267) -- 0:05:17
      16000 -- (-2107.645) [-2094.982] (-2106.489) (-2100.944) * (-2100.560) (-2097.711) [-2095.964] (-2096.374) -- 0:05:07
      16500 -- [-2095.575] (-2095.574) (-2106.771) (-2104.140) * (-2101.615) (-2096.537) [-2100.472] (-2099.306) -- 0:04:58
      17000 -- (-2097.405) (-2099.165) (-2099.792) [-2098.641] * (-2096.507) (-2098.830) (-2109.789) [-2102.347] -- 0:05:46
      17500 -- (-2097.634) [-2095.476] (-2104.708) (-2100.652) * (-2095.171) (-2096.108) [-2102.964] (-2100.616) -- 0:05:36
      18000 -- [-2093.936] (-2097.145) (-2103.792) (-2100.379) * (-2099.637) (-2094.266) [-2097.713] (-2094.625) -- 0:05:27
      18500 -- (-2088.719) (-2096.214) [-2094.990] (-2097.791) * (-2094.687) [-2092.123] (-2097.854) (-2088.602) -- 0:05:18
      19000 -- [-2095.930] (-2098.922) (-2094.756) (-2092.702) * (-2092.312) (-2093.438) (-2095.698) [-2098.328] -- 0:05:09
      19500 -- (-2101.287) (-2098.467) [-2091.006] (-2101.116) * (-2103.219) (-2093.815) [-2101.717] (-2099.584) -- 0:05:01
      20000 -- (-2100.870) (-2098.042) (-2096.790) [-2098.870] * (-2100.609) (-2096.574) [-2094.996] (-2104.523) -- 0:05:43

      Average standard deviation of split frequencies: 0.017107

      20500 -- (-2108.249) [-2092.016] (-2099.518) (-2101.275) * (-2096.453) (-2090.044) [-2089.201] (-2098.484) -- 0:05:34
      21000 -- (-2096.912) [-2100.248] (-2097.145) (-2101.130) * [-2092.618] (-2100.331) (-2102.509) (-2093.710) -- 0:05:26
      21500 -- (-2099.866) [-2094.757] (-2094.763) (-2096.479) * [-2098.015] (-2102.990) (-2093.788) (-2099.783) -- 0:05:18
      22000 -- (-2104.830) (-2094.571) [-2097.273] (-2090.790) * (-2096.059) [-2096.878] (-2096.435) (-2090.688) -- 0:05:11
      22500 -- (-2103.433) (-2095.257) [-2093.297] (-2088.710) * (-2098.329) (-2094.147) (-2102.209) [-2098.417] -- 0:05:04
      23000 -- (-2101.826) (-2093.293) (-2098.591) [-2095.717] * [-2101.180] (-2091.868) (-2102.218) (-2100.033) -- 0:04:57
      23500 -- (-2097.730) [-2096.471] (-2100.586) (-2095.153) * (-2099.120) (-2092.412) [-2093.080] (-2094.332) -- 0:05:32
      24000 -- (-2094.429) [-2098.618] (-2096.639) (-2094.374) * (-2091.875) (-2101.151) (-2092.685) [-2096.029] -- 0:05:25
      24500 -- (-2095.170) (-2091.217) (-2096.111) [-2095.316] * (-2099.396) [-2094.077] (-2091.787) (-2093.592) -- 0:05:18
      25000 -- [-2094.908] (-2093.498) (-2093.078) (-2100.925) * (-2094.820) (-2095.727) (-2100.506) [-2092.511] -- 0:05:12

      Average standard deviation of split frequencies: 0.013598

      25500 -- (-2102.415) (-2090.760) (-2097.879) [-2089.507] * (-2104.685) (-2095.758) (-2094.908) [-2098.067] -- 0:05:05
      26000 -- (-2098.041) (-2093.832) [-2088.294] (-2089.527) * [-2098.027] (-2098.186) (-2093.379) (-2095.293) -- 0:04:59
      26500 -- (-2100.800) (-2092.409) (-2090.082) [-2092.806] * (-2100.066) (-2109.616) (-2096.491) [-2100.440] -- 0:05:30
      27000 -- (-2097.598) [-2097.138] (-2099.907) (-2093.933) * (-2096.342) (-2101.231) (-2098.843) [-2097.458] -- 0:05:24
      27500 -- (-2091.965) (-2102.629) [-2091.157] (-2097.259) * [-2094.240] (-2100.466) (-2103.796) (-2095.787) -- 0:05:18
      28000 -- (-2095.989) (-2093.817) [-2095.111] (-2099.416) * (-2102.524) (-2094.343) (-2098.355) [-2093.186] -- 0:05:12
      28500 -- (-2104.124) (-2100.615) (-2105.755) [-2093.961] * (-2098.128) (-2092.474) (-2102.872) [-2091.589] -- 0:05:06
      29000 -- (-2096.652) (-2093.974) (-2096.316) [-2095.153] * (-2099.092) [-2089.872] (-2097.772) (-2092.944) -- 0:05:01
      29500 -- (-2096.479) [-2091.710] (-2104.364) (-2098.464) * (-2093.527) (-2100.362) (-2094.739) [-2092.257] -- 0:04:56
      30000 -- [-2101.891] (-2095.811) (-2100.086) (-2098.686) * (-2097.539) [-2094.429] (-2099.640) (-2097.947) -- 0:05:23

      Average standard deviation of split frequencies: 0.019215

      30500 -- (-2102.542) (-2102.026) [-2097.101] (-2097.746) * [-2094.517] (-2098.860) (-2095.801) (-2097.622) -- 0:05:17
      31000 -- [-2101.893] (-2112.907) (-2105.285) (-2094.440) * (-2102.299) (-2094.408) (-2103.566) [-2100.455] -- 0:05:12
      31500 -- (-2098.768) (-2096.482) [-2100.145] (-2095.646) * (-2104.179) (-2100.240) (-2104.223) [-2096.095] -- 0:05:07
      32000 -- (-2094.463) (-2092.489) [-2093.190] (-2100.970) * [-2100.322] (-2102.368) (-2103.136) (-2106.341) -- 0:05:02
      32500 -- [-2094.281] (-2094.224) (-2096.201) (-2095.336) * [-2092.011] (-2100.635) (-2094.346) (-2095.400) -- 0:04:57
      33000 -- (-2096.709) (-2107.092) [-2097.112] (-2094.334) * [-2092.205] (-2096.750) (-2094.932) (-2098.592) -- 0:04:53
      33500 -- (-2099.355) (-2096.819) (-2099.377) [-2095.193] * (-2097.967) (-2102.258) [-2093.542] (-2105.250) -- 0:05:17
      34000 -- (-2104.503) [-2105.344] (-2096.659) (-2096.246) * (-2097.519) [-2103.535] (-2092.829) (-2099.267) -- 0:05:12
      34500 -- (-2099.834) [-2094.418] (-2100.793) (-2094.568) * (-2100.263) (-2096.534) (-2094.321) [-2099.429] -- 0:05:07
      35000 -- (-2099.723) (-2097.464) [-2099.588] (-2094.394) * (-2100.237) (-2101.550) (-2106.770) [-2096.877] -- 0:05:03

      Average standard deviation of split frequencies: 0.026189

      35500 -- (-2110.051) [-2101.414] (-2099.787) (-2092.749) * (-2102.783) (-2096.926) (-2097.145) [-2098.243] -- 0:04:58
      36000 -- (-2103.005) [-2101.276] (-2091.738) (-2098.417) * (-2105.021) [-2098.442] (-2092.431) (-2101.858) -- 0:04:54
      36500 -- (-2109.062) [-2092.250] (-2097.107) (-2097.111) * (-2111.321) (-2092.736) (-2094.309) [-2093.041] -- 0:05:16
      37000 -- (-2099.194) [-2089.693] (-2103.795) (-2095.973) * (-2099.938) (-2105.467) (-2094.475) [-2094.408] -- 0:05:12
      37500 -- (-2101.750) (-2095.121) [-2096.056] (-2097.793) * (-2097.304) (-2104.779) [-2101.327] (-2103.244) -- 0:05:08
      38000 -- [-2101.079] (-2100.749) (-2096.785) (-2099.263) * (-2101.919) [-2093.303] (-2094.196) (-2099.396) -- 0:05:03
      38500 -- (-2096.647) (-2103.941) (-2096.229) [-2092.724] * (-2094.693) (-2092.831) [-2094.437] (-2097.419) -- 0:04:59
      39000 -- (-2090.192) (-2098.314) (-2101.433) [-2095.646] * [-2094.731] (-2093.935) (-2100.537) (-2094.409) -- 0:04:55
      39500 -- (-2094.814) (-2106.243) (-2097.329) [-2096.894] * (-2088.317) (-2095.933) (-2101.633) [-2098.744] -- 0:04:51
      40000 -- (-2094.887) [-2095.164] (-2090.200) (-2096.154) * [-2102.020] (-2098.030) (-2091.030) (-2093.237) -- 0:05:12

      Average standard deviation of split frequencies: 0.023184

      40500 -- [-2097.509] (-2101.883) (-2094.340) (-2093.542) * (-2098.523) (-2096.002) [-2095.869] (-2100.115) -- 0:05:07
      41000 -- (-2099.437) (-2098.300) (-2098.737) [-2094.922] * (-2095.146) (-2094.440) [-2094.309] (-2093.525) -- 0:05:04
      41500 -- [-2092.330] (-2095.326) (-2097.008) (-2095.046) * (-2102.797) [-2097.571] (-2095.145) (-2101.045) -- 0:05:00
      42000 -- [-2095.201] (-2097.434) (-2092.601) (-2101.952) * (-2093.867) (-2097.673) (-2096.798) [-2095.874] -- 0:04:56
      42500 -- (-2090.795) [-2098.333] (-2096.400) (-2098.444) * [-2095.145] (-2093.759) (-2092.425) (-2101.852) -- 0:04:52
      43000 -- (-2094.484) [-2096.422] (-2095.870) (-2093.551) * (-2101.901) (-2098.287) (-2094.682) [-2098.474] -- 0:04:49
      43500 -- [-2100.649] (-2095.403) (-2100.559) (-2098.006) * (-2102.446) (-2100.772) [-2092.592] (-2100.718) -- 0:05:07
      44000 -- (-2098.609) [-2092.281] (-2095.662) (-2103.319) * [-2097.141] (-2097.644) (-2099.343) (-2104.868) -- 0:05:04
      44500 -- [-2096.727] (-2097.958) (-2094.940) (-2100.304) * (-2088.184) [-2098.254] (-2096.660) (-2103.781) -- 0:05:00
      45000 -- [-2096.718] (-2095.255) (-2102.380) (-2101.206) * (-2093.519) (-2092.863) [-2097.150] (-2102.311) -- 0:04:57

      Average standard deviation of split frequencies: 0.030744

      45500 -- (-2091.206) (-2096.261) (-2098.284) [-2095.579] * (-2092.877) [-2098.101] (-2091.346) (-2102.867) -- 0:04:53
      46000 -- (-2097.318) (-2097.872) [-2093.158] (-2096.375) * [-2091.106] (-2092.088) (-2096.395) (-2104.838) -- 0:04:50
      46500 -- (-2094.423) (-2095.347) (-2091.728) [-2093.573] * (-2095.660) (-2099.195) [-2090.908] (-2103.403) -- 0:05:07
      47000 -- [-2098.670] (-2095.289) (-2098.024) (-2094.693) * (-2090.178) [-2091.673] (-2102.944) (-2112.868) -- 0:05:04
      47500 -- (-2095.133) (-2098.645) (-2103.367) [-2092.680] * (-2100.982) (-2092.226) [-2090.414] (-2107.552) -- 0:05:00
      48000 -- [-2101.153] (-2097.056) (-2098.086) (-2102.417) * (-2096.344) [-2093.647] (-2097.280) (-2098.710) -- 0:04:57
      48500 -- (-2096.103) [-2093.926] (-2092.620) (-2100.371) * (-2103.938) (-2096.173) [-2093.050] (-2104.640) -- 0:04:54
      49000 -- (-2094.375) (-2099.784) (-2094.657) [-2089.925] * (-2097.103) [-2099.302] (-2097.630) (-2103.294) -- 0:04:51
      49500 -- [-2098.620] (-2110.469) (-2102.846) (-2092.737) * (-2098.762) (-2094.924) (-2100.382) [-2101.153] -- 0:05:07
      50000 -- (-2096.671) [-2098.978] (-2106.712) (-2093.828) * (-2090.432) [-2104.882] (-2097.382) (-2096.513) -- 0:05:04

      Average standard deviation of split frequencies: 0.018608

      50500 -- (-2101.341) [-2094.715] (-2099.518) (-2100.955) * (-2097.839) [-2094.680] (-2096.565) (-2092.690) -- 0:05:00
      51000 -- [-2095.995] (-2099.809) (-2100.633) (-2098.236) * (-2094.240) (-2095.663) (-2099.630) [-2096.309] -- 0:04:57
      51500 -- (-2093.696) (-2099.103) [-2102.051] (-2100.138) * (-2093.467) (-2097.329) (-2098.398) [-2091.260] -- 0:04:54
      52000 -- (-2098.731) (-2094.820) [-2096.625] (-2094.377) * [-2095.026] (-2097.047) (-2094.495) (-2101.155) -- 0:04:51
      52500 -- (-2100.402) [-2089.385] (-2096.659) (-2096.304) * (-2097.251) (-2098.659) [-2100.043] (-2096.557) -- 0:04:48
      53000 -- [-2099.028] (-2094.268) (-2093.794) (-2104.970) * (-2104.616) [-2095.689] (-2101.387) (-2098.200) -- 0:05:03
      53500 -- [-2100.549] (-2098.434) (-2092.669) (-2098.768) * (-2095.488) (-2096.469) [-2090.571] (-2091.102) -- 0:05:00
      54000 -- [-2099.449] (-2101.468) (-2097.355) (-2095.909) * (-2101.201) (-2103.094) (-2095.914) [-2095.527] -- 0:04:57
      54500 -- (-2091.267) (-2102.149) (-2102.024) [-2089.124] * (-2093.318) (-2100.921) (-2098.912) [-2096.350] -- 0:04:54
      55000 -- [-2092.468] (-2091.377) (-2096.904) (-2101.330) * (-2095.596) (-2100.646) (-2099.997) [-2093.704] -- 0:04:52

      Average standard deviation of split frequencies: 0.018940

      55500 -- (-2094.906) (-2097.965) [-2097.344] (-2092.050) * (-2096.896) (-2111.129) (-2099.952) [-2099.369] -- 0:04:49
      56000 -- [-2089.923] (-2097.140) (-2104.418) (-2093.673) * (-2093.454) [-2097.155] (-2094.517) (-2096.786) -- 0:04:46
      56500 -- (-2090.643) [-2089.430] (-2098.023) (-2096.925) * (-2094.396) (-2102.935) [-2095.959] (-2093.683) -- 0:05:00
      57000 -- (-2094.665) (-2089.855) (-2098.045) [-2093.538] * (-2098.462) [-2095.974] (-2102.177) (-2093.519) -- 0:04:57
      57500 -- (-2087.388) (-2095.710) (-2093.157) [-2097.611] * [-2094.781] (-2096.709) (-2095.703) (-2101.532) -- 0:04:55
      58000 -- (-2107.217) (-2094.491) (-2098.297) [-2094.411] * (-2095.263) [-2094.897] (-2093.882) (-2103.378) -- 0:04:52
      58500 -- (-2100.856) (-2096.940) (-2091.658) [-2097.512] * (-2094.109) (-2099.994) (-2094.825) [-2097.859] -- 0:04:49
      59000 -- (-2100.699) (-2101.893) (-2110.225) [-2093.798] * (-2092.123) (-2094.841) [-2097.612] (-2101.230) -- 0:04:47
      59500 -- (-2100.036) (-2092.468) [-2100.144] (-2093.897) * [-2092.383] (-2097.144) (-2111.362) (-2099.605) -- 0:05:00
      60000 -- (-2103.550) (-2099.453) (-2093.847) [-2093.088] * (-2092.380) (-2099.724) (-2102.319) [-2095.294] -- 0:04:57

      Average standard deviation of split frequencies: 0.025254

      60500 -- (-2105.576) (-2092.392) (-2099.097) [-2094.230] * (-2101.091) (-2094.951) (-2096.891) [-2097.296] -- 0:04:55
      61000 -- [-2094.330] (-2102.329) (-2093.864) (-2096.953) * (-2095.124) (-2094.385) [-2096.988] (-2097.126) -- 0:04:52
      61500 -- (-2098.885) (-2097.928) (-2096.190) [-2096.762] * (-2095.980) [-2094.647] (-2104.346) (-2099.511) -- 0:04:49
      62000 -- (-2100.058) (-2094.709) (-2096.334) [-2096.084] * [-2090.411] (-2095.156) (-2098.860) (-2098.716) -- 0:04:47
      62500 -- (-2099.541) (-2099.328) (-2095.940) [-2093.920] * (-2095.968) [-2096.509] (-2103.057) (-2098.081) -- 0:04:45
      63000 -- [-2098.982] (-2098.991) (-2096.440) (-2096.302) * (-2093.606) (-2094.622) [-2097.559] (-2101.091) -- 0:04:57
      63500 -- (-2100.812) (-2103.739) (-2100.811) [-2104.688] * (-2094.887) (-2101.228) (-2104.589) [-2092.455] -- 0:04:54
      64000 -- (-2093.087) [-2091.478] (-2104.238) (-2102.693) * (-2099.573) [-2093.557] (-2105.809) (-2099.094) -- 0:04:52
      64500 -- (-2096.051) [-2095.328] (-2101.943) (-2094.224) * (-2095.527) (-2091.187) [-2092.648] (-2099.769) -- 0:04:50
      65000 -- [-2095.877] (-2093.882) (-2104.238) (-2096.739) * (-2094.040) (-2090.709) (-2098.509) [-2095.120] -- 0:04:47

      Average standard deviation of split frequencies: 0.023213

      65500 -- (-2096.113) (-2090.712) [-2094.842] (-2098.273) * (-2095.652) (-2087.335) (-2104.298) [-2091.193] -- 0:04:45
      66000 -- [-2093.480] (-2094.364) (-2095.721) (-2109.305) * (-2095.540) [-2106.966] (-2101.678) (-2093.989) -- 0:04:43
      66500 -- (-2099.333) (-2099.798) [-2095.124] (-2097.110) * (-2098.396) (-2104.515) [-2091.515] (-2095.556) -- 0:04:54
      67000 -- (-2095.833) (-2107.772) [-2094.886] (-2096.715) * (-2095.752) [-2094.255] (-2093.640) (-2099.662) -- 0:04:52
      67500 -- (-2104.595) (-2098.722) [-2096.418] (-2093.792) * [-2093.870] (-2106.697) (-2101.587) (-2095.892) -- 0:04:50
      68000 -- (-2094.839) [-2097.995] (-2098.086) (-2095.854) * [-2092.925] (-2102.365) (-2098.364) (-2098.258) -- 0:04:47
      68500 -- [-2092.205] (-2100.761) (-2096.695) (-2092.205) * (-2094.625) [-2096.938] (-2094.473) (-2095.628) -- 0:04:45
      69000 -- [-2093.819] (-2099.475) (-2097.920) (-2094.627) * (-2096.817) [-2094.955] (-2097.636) (-2101.165) -- 0:04:43
      69500 -- (-2101.301) (-2100.168) [-2095.576] (-2095.749) * (-2094.433) (-2101.760) (-2101.123) [-2093.174] -- 0:04:54
      70000 -- [-2094.994] (-2099.176) (-2095.485) (-2090.880) * [-2094.723] (-2090.420) (-2099.825) (-2105.512) -- 0:04:52

      Average standard deviation of split frequencies: 0.015009

      70500 -- [-2089.128] (-2097.926) (-2096.833) (-2095.724) * (-2091.659) [-2092.559] (-2104.102) (-2091.855) -- 0:04:50
      71000 -- (-2092.612) [-2101.314] (-2094.060) (-2096.281) * (-2096.758) (-2097.288) (-2093.425) [-2096.947] -- 0:04:47
      71500 -- (-2096.760) (-2098.564) (-2098.617) [-2093.478] * (-2098.406) (-2094.878) [-2089.258] (-2093.930) -- 0:04:45
      72000 -- (-2094.946) (-2102.057) [-2095.142] (-2096.485) * [-2097.118] (-2101.594) (-2099.700) (-2097.636) -- 0:04:43
      72500 -- (-2092.156) (-2109.273) [-2094.531] (-2098.419) * (-2098.919) (-2095.926) (-2098.130) [-2097.365] -- 0:04:41
      73000 -- [-2093.302] (-2107.437) (-2093.358) (-2098.732) * (-2092.332) (-2093.378) [-2095.131] (-2099.861) -- 0:04:52
      73500 -- (-2094.829) (-2094.288) [-2094.720] (-2103.290) * (-2091.589) (-2104.227) (-2099.462) [-2099.985] -- 0:04:49
      74000 -- (-2097.353) (-2105.699) (-2103.330) [-2091.667] * (-2099.364) (-2099.151) [-2092.814] (-2098.530) -- 0:04:47
      74500 -- (-2096.428) [-2090.145] (-2091.834) (-2095.008) * (-2117.919) (-2098.322) (-2096.216) [-2099.041] -- 0:04:45
      75000 -- (-2101.339) [-2094.474] (-2093.405) (-2104.392) * (-2109.892) (-2098.846) (-2093.909) [-2091.854] -- 0:04:43

      Average standard deviation of split frequencies: 0.015507

      75500 -- (-2096.326) (-2094.372) (-2091.783) [-2096.147] * [-2095.450] (-2101.539) (-2093.983) (-2098.961) -- 0:04:41
      76000 -- (-2094.822) [-2098.002] (-2096.128) (-2094.029) * (-2096.301) (-2100.731) [-2094.954] (-2093.137) -- 0:04:39
      76500 -- (-2093.704) (-2099.609) (-2091.207) [-2091.277] * (-2096.131) (-2103.655) [-2094.513] (-2094.001) -- 0:04:49
      77000 -- (-2100.055) (-2092.016) (-2090.993) [-2091.922] * (-2095.674) (-2104.809) [-2096.429] (-2091.290) -- 0:04:47
      77500 -- (-2096.072) [-2099.306] (-2104.506) (-2095.676) * (-2099.089) [-2093.484] (-2100.284) (-2092.235) -- 0:04:45
      78000 -- (-2098.079) (-2097.841) [-2091.580] (-2097.199) * (-2096.544) (-2095.208) (-2100.520) [-2089.909] -- 0:04:43
      78500 -- [-2094.330] (-2093.417) (-2096.706) (-2093.592) * (-2100.884) [-2094.777] (-2107.257) (-2094.634) -- 0:04:41
      79000 -- (-2096.880) (-2096.905) (-2094.288) [-2097.140] * (-2102.145) (-2101.463) [-2096.514] (-2099.450) -- 0:04:39
      79500 -- (-2093.350) (-2098.346) [-2092.431] (-2110.040) * (-2096.811) (-2094.493) (-2107.877) [-2090.725] -- 0:04:49
      80000 -- (-2102.095) (-2090.521) [-2095.666] (-2100.964) * [-2093.004] (-2097.728) (-2094.506) (-2099.414) -- 0:04:47

      Average standard deviation of split frequencies: 0.014610

      80500 -- (-2095.823) [-2091.267] (-2096.471) (-2097.135) * [-2099.436] (-2095.817) (-2103.749) (-2102.297) -- 0:04:45
      81000 -- [-2095.579] (-2094.482) (-2106.328) (-2094.874) * (-2099.664) [-2093.618] (-2094.983) (-2100.993) -- 0:04:43
      81500 -- (-2095.785) [-2092.502] (-2091.244) (-2098.830) * (-2096.999) (-2095.495) (-2104.219) [-2098.798] -- 0:04:41
      82000 -- [-2094.183] (-2094.981) (-2091.858) (-2100.994) * (-2096.574) (-2100.868) [-2094.253] (-2092.858) -- 0:04:39
      82500 -- (-2099.266) (-2102.438) [-2098.633] (-2100.345) * (-2097.707) [-2096.130] (-2092.192) (-2105.452) -- 0:04:38
      83000 -- [-2103.164] (-2091.813) (-2097.766) (-2091.601) * (-2093.644) [-2098.521] (-2097.818) (-2096.836) -- 0:04:47
      83500 -- [-2094.790] (-2105.847) (-2091.091) (-2096.697) * [-2091.548] (-2092.603) (-2096.831) (-2096.145) -- 0:04:45
      84000 -- [-2102.916] (-2107.025) (-2096.440) (-2094.970) * [-2094.339] (-2100.408) (-2091.673) (-2095.231) -- 0:04:43
      84500 -- [-2097.494] (-2105.291) (-2093.996) (-2100.111) * (-2101.769) (-2097.260) [-2095.302] (-2098.636) -- 0:04:41
      85000 -- (-2098.336) (-2096.022) (-2100.250) [-2105.752] * (-2098.406) (-2097.232) [-2090.295] (-2102.983) -- 0:04:39

      Average standard deviation of split frequencies: 0.012333

      85500 -- (-2102.328) (-2101.939) (-2099.233) [-2098.204] * [-2092.343] (-2103.791) (-2098.244) (-2095.283) -- 0:04:38
      86000 -- (-2102.792) [-2099.793] (-2110.912) (-2089.887) * (-2093.581) [-2098.754] (-2097.238) (-2094.396) -- 0:04:36
      86500 -- (-2102.998) (-2098.616) (-2091.758) [-2095.201] * (-2098.038) (-2097.908) [-2092.882] (-2095.500) -- 0:04:45
      87000 -- (-2104.730) (-2099.788) (-2098.305) [-2092.406] * [-2097.687] (-2094.371) (-2096.370) (-2096.857) -- 0:04:43
      87500 -- (-2092.601) (-2114.820) [-2088.769] (-2098.866) * [-2093.864] (-2100.189) (-2096.903) (-2095.815) -- 0:04:41
      88000 -- (-2097.445) [-2093.447] (-2096.995) (-2100.984) * (-2107.327) [-2097.117] (-2106.924) (-2090.688) -- 0:04:39
      88500 -- (-2095.838) (-2107.482) [-2094.441] (-2091.919) * (-2114.579) (-2099.765) [-2093.505] (-2098.899) -- 0:04:38
      89000 -- (-2100.069) [-2095.251] (-2093.861) (-2094.167) * [-2094.713] (-2101.841) (-2098.635) (-2106.159) -- 0:04:36
      89500 -- (-2100.293) [-2093.372] (-2094.800) (-2094.223) * (-2101.121) (-2104.207) [-2093.686] (-2096.853) -- 0:04:44
      90000 -- (-2096.296) (-2091.850) (-2094.597) [-2105.498] * (-2097.541) (-2091.276) (-2095.014) [-2093.001] -- 0:04:43

      Average standard deviation of split frequencies: 0.014298

      90500 -- (-2089.838) (-2097.368) (-2095.815) [-2095.141] * (-2097.402) (-2100.531) [-2091.989] (-2094.170) -- 0:04:41
      91000 -- (-2091.439) (-2093.927) (-2097.673) [-2095.498] * (-2100.296) (-2098.676) (-2094.497) [-2105.500] -- 0:04:39
      91500 -- (-2097.009) (-2097.955) (-2095.219) [-2093.947] * (-2103.168) (-2096.550) (-2095.234) [-2094.866] -- 0:04:38
      92000 -- [-2096.870] (-2100.340) (-2094.421) (-2092.576) * [-2095.619] (-2104.892) (-2096.519) (-2101.512) -- 0:04:36
      92500 -- (-2103.542) (-2091.980) (-2093.319) [-2099.043] * (-2102.762) [-2102.469] (-2095.035) (-2093.662) -- 0:04:34
      93000 -- (-2097.581) (-2095.065) (-2102.474) [-2098.026] * (-2097.900) [-2102.166] (-2098.445) (-2095.139) -- 0:04:42
      93500 -- (-2096.348) [-2103.768] (-2096.112) (-2095.247) * (-2101.390) [-2095.953] (-2098.154) (-2096.272) -- 0:04:41
      94000 -- [-2093.777] (-2109.721) (-2100.863) (-2102.055) * [-2097.505] (-2098.110) (-2093.151) (-2101.481) -- 0:04:39
      94500 -- [-2103.079] (-2098.397) (-2099.372) (-2098.528) * (-2095.727) (-2094.132) (-2099.459) [-2096.613] -- 0:04:37
      95000 -- (-2095.354) (-2096.429) [-2095.827] (-2100.479) * (-2094.422) (-2097.115) [-2094.932] (-2099.344) -- 0:04:36

      Average standard deviation of split frequencies: 0.015959

      95500 -- [-2100.366] (-2099.060) (-2093.659) (-2097.278) * (-2098.845) [-2096.561] (-2095.350) (-2107.168) -- 0:04:34
      96000 -- (-2100.350) (-2107.297) (-2095.765) [-2095.952] * (-2098.810) (-2094.516) [-2096.962] (-2108.966) -- 0:04:42
      96500 -- [-2108.622] (-2108.425) (-2104.216) (-2095.746) * (-2101.115) (-2096.760) [-2094.063] (-2102.013) -- 0:04:40
      97000 -- (-2091.887) (-2101.937) (-2117.408) [-2089.205] * (-2096.999) (-2100.798) [-2092.398] (-2098.690) -- 0:04:39
      97500 -- [-2097.368] (-2106.408) (-2105.443) (-2097.117) * (-2106.191) (-2104.604) (-2091.018) [-2092.334] -- 0:04:37
      98000 -- [-2102.253] (-2101.509) (-2097.258) (-2095.611) * (-2096.891) (-2101.052) (-2092.540) [-2095.074] -- 0:04:36
      98500 -- (-2095.646) (-2101.879) (-2103.102) [-2093.225] * [-2103.198] (-2106.533) (-2098.533) (-2105.449) -- 0:04:34
      99000 -- (-2100.800) [-2092.308] (-2092.180) (-2099.914) * [-2099.965] (-2101.246) (-2100.129) (-2096.411) -- 0:04:33
      99500 -- [-2102.722] (-2096.116) (-2097.953) (-2103.781) * (-2101.176) (-2106.643) (-2103.677) [-2102.066] -- 0:04:40
      100000 -- (-2096.307) (-2090.340) [-2099.853] (-2100.632) * (-2099.886) (-2093.102) (-2103.305) [-2097.504] -- 0:04:39

      Average standard deviation of split frequencies: 0.009366

      100500 -- (-2102.745) (-2098.343) (-2092.372) [-2100.690] * (-2098.637) (-2092.440) (-2102.400) [-2094.920] -- 0:04:37
      101000 -- (-2100.757) (-2099.623) (-2102.253) [-2099.621] * [-2094.938] (-2096.803) (-2116.428) (-2091.352) -- 0:04:35
      101500 -- [-2093.698] (-2094.966) (-2098.487) (-2090.980) * (-2101.280) (-2100.458) (-2101.438) [-2094.598] -- 0:04:34
      102000 -- (-2091.508) [-2093.815] (-2099.716) (-2095.217) * [-2093.495] (-2100.779) (-2097.914) (-2098.653) -- 0:04:32
      102500 -- [-2096.662] (-2098.499) (-2098.979) (-2095.425) * (-2098.074) (-2095.813) (-2104.889) [-2095.115] -- 0:04:40
      103000 -- (-2102.054) (-2098.273) [-2093.216] (-2095.076) * [-2100.658] (-2104.315) (-2091.954) (-2093.515) -- 0:04:38
      103500 -- [-2098.322] (-2091.012) (-2097.458) (-2095.062) * (-2092.629) (-2096.331) (-2097.491) [-2093.284] -- 0:04:37
      104000 -- [-2099.764] (-2097.455) (-2091.051) (-2094.721) * (-2098.848) [-2097.941] (-2104.493) (-2095.487) -- 0:04:35
      104500 -- [-2097.987] (-2099.467) (-2095.067) (-2092.052) * [-2099.640] (-2098.454) (-2098.895) (-2102.458) -- 0:04:34
      105000 -- (-2097.239) (-2100.899) (-2094.020) [-2094.888] * [-2093.358] (-2099.344) (-2096.037) (-2097.712) -- 0:04:32

      Average standard deviation of split frequencies: 0.011118

      105500 -- (-2092.544) (-2095.254) (-2095.897) [-2098.121] * (-2100.946) (-2093.846) (-2098.622) [-2092.147] -- 0:04:31
      106000 -- (-2092.623) [-2095.749] (-2092.628) (-2095.039) * (-2106.218) (-2104.023) (-2094.032) [-2101.459] -- 0:04:38
      106500 -- [-2098.780] (-2095.932) (-2099.889) (-2097.431) * [-2091.408] (-2098.932) (-2097.169) (-2100.841) -- 0:04:36
      107000 -- (-2100.752) [-2092.510] (-2093.321) (-2104.166) * (-2093.735) (-2101.834) [-2092.495] (-2095.540) -- 0:04:35
      107500 -- (-2091.160) (-2096.390) [-2094.805] (-2095.853) * (-2105.488) [-2092.869] (-2095.858) (-2107.124) -- 0:04:33
      108000 -- [-2093.433] (-2100.341) (-2094.344) (-2094.221) * (-2098.060) (-2109.568) (-2097.319) [-2098.220] -- 0:04:32
      108500 -- (-2089.739) (-2101.708) (-2091.574) [-2092.132] * (-2101.129) (-2103.819) (-2095.777) [-2100.775] -- 0:04:31
      109000 -- (-2094.576) (-2100.591) [-2097.591] (-2091.856) * (-2103.625) [-2099.835] (-2091.486) (-2093.196) -- 0:04:37
      109500 -- (-2098.692) (-2097.727) [-2098.248] (-2098.394) * (-2102.324) (-2105.932) [-2096.369] (-2101.463) -- 0:04:36
      110000 -- [-2092.998] (-2095.288) (-2100.658) (-2097.131) * (-2105.947) (-2110.003) [-2101.209] (-2103.501) -- 0:04:35

      Average standard deviation of split frequencies: 0.010649

      110500 -- (-2097.973) (-2098.023) (-2098.082) [-2094.775] * (-2100.345) (-2094.263) [-2093.599] (-2095.648) -- 0:04:33
      111000 -- (-2098.211) (-2101.191) [-2095.916] (-2103.721) * [-2092.578] (-2098.421) (-2101.870) (-2092.388) -- 0:04:32
      111500 -- (-2096.890) (-2094.825) [-2097.815] (-2097.244) * (-2094.585) [-2099.525] (-2096.655) (-2104.389) -- 0:04:30
      112000 -- (-2105.020) [-2100.867] (-2103.145) (-2097.399) * (-2099.106) (-2103.817) (-2096.248) [-2097.897] -- 0:04:29
      112500 -- (-2100.792) (-2093.215) (-2101.931) [-2106.144] * (-2098.757) (-2101.296) [-2092.320] (-2094.261) -- 0:04:36
      113000 -- (-2098.473) (-2094.582) (-2098.752) [-2091.472] * [-2099.899] (-2101.071) (-2096.533) (-2097.159) -- 0:04:34
      113500 -- [-2102.383] (-2101.078) (-2097.020) (-2097.504) * [-2098.363] (-2099.104) (-2096.842) (-2099.425) -- 0:04:33
      114000 -- (-2095.543) (-2099.377) (-2103.803) [-2108.714] * (-2093.860) (-2090.455) (-2102.204) [-2090.743] -- 0:04:32
      114500 -- (-2100.276) [-2097.970] (-2101.521) (-2096.609) * (-2103.717) (-2098.694) [-2099.145] (-2098.707) -- 0:04:30
      115000 -- [-2093.994] (-2103.676) (-2105.885) (-2103.906) * (-2097.535) [-2098.563] (-2100.016) (-2093.360) -- 0:04:29

      Average standard deviation of split frequencies: 0.009144

      115500 -- (-2091.120) [-2097.147] (-2093.595) (-2099.684) * [-2092.500] (-2092.963) (-2102.922) (-2094.284) -- 0:04:35
      116000 -- (-2091.624) (-2099.722) [-2091.733] (-2096.589) * [-2090.490] (-2095.412) (-2103.297) (-2098.230) -- 0:04:34
      116500 -- [-2094.405] (-2103.299) (-2094.463) (-2101.262) * [-2092.882] (-2092.636) (-2099.054) (-2097.622) -- 0:04:33
      117000 -- (-2091.110) (-2102.592) [-2091.519] (-2100.660) * (-2098.764) [-2094.130] (-2090.715) (-2093.634) -- 0:04:31
      117500 -- (-2096.479) (-2100.641) (-2101.028) [-2093.202] * [-2095.732] (-2091.772) (-2095.974) (-2100.421) -- 0:04:30
      118000 -- (-2098.628) (-2097.678) (-2099.446) [-2095.453] * [-2092.899] (-2101.933) (-2098.353) (-2097.013) -- 0:04:29
      118500 -- (-2098.999) (-2094.206) (-2102.648) [-2092.542] * (-2097.839) (-2098.373) [-2093.979] (-2100.262) -- 0:04:35
      119000 -- (-2095.792) [-2100.923] (-2094.715) (-2103.304) * (-2107.348) (-2105.743) [-2098.139] (-2102.630) -- 0:04:33
      119500 -- (-2092.044) (-2096.342) [-2095.801] (-2105.675) * (-2099.786) (-2100.972) (-2092.240) [-2093.357] -- 0:04:32
      120000 -- [-2089.894] (-2093.108) (-2093.952) (-2107.609) * (-2103.043) (-2097.514) [-2100.948] (-2093.198) -- 0:04:31

      Average standard deviation of split frequencies: 0.009767

      120500 -- (-2092.700) (-2097.701) (-2095.499) [-2096.384] * [-2101.917] (-2097.888) (-2095.883) (-2097.870) -- 0:04:30
      121000 -- [-2090.731] (-2095.019) (-2093.631) (-2097.399) * (-2099.331) (-2105.176) [-2099.506] (-2092.784) -- 0:04:28
      121500 -- (-2093.178) (-2098.172) [-2094.317] (-2109.647) * (-2109.501) (-2094.237) [-2094.188] (-2095.966) -- 0:04:27
      122000 -- (-2092.608) [-2094.377] (-2097.707) (-2102.170) * [-2096.878] (-2095.525) (-2092.023) (-2094.524) -- 0:04:33
      122500 -- (-2090.865) [-2091.592] (-2093.776) (-2102.124) * (-2095.104) (-2091.722) [-2101.238] (-2092.239) -- 0:04:32
      123000 -- (-2099.190) (-2104.157) (-2091.452) [-2102.032] * (-2097.868) (-2097.673) (-2098.222) [-2093.825] -- 0:04:30
      123500 -- (-2105.395) (-2099.172) [-2095.370] (-2099.424) * [-2093.254] (-2094.233) (-2093.998) (-2091.869) -- 0:04:29
      124000 -- [-2092.191] (-2092.951) (-2093.389) (-2097.984) * (-2090.780) (-2096.828) [-2093.234] (-2097.617) -- 0:04:28
      124500 -- [-2089.949] (-2093.891) (-2095.124) (-2097.447) * (-2100.853) [-2094.406] (-2093.259) (-2094.512) -- 0:04:27
      125000 -- [-2088.320] (-2096.104) (-2100.979) (-2102.451) * (-2103.029) (-2094.110) [-2091.044] (-2103.443) -- 0:04:33

      Average standard deviation of split frequencies: 0.009353

      125500 -- [-2089.887] (-2100.685) (-2104.862) (-2100.636) * (-2092.924) [-2095.646] (-2100.653) (-2097.057) -- 0:04:31
      126000 -- (-2091.588) [-2100.403] (-2105.031) (-2100.824) * (-2099.718) (-2098.048) [-2094.244] (-2097.287) -- 0:04:30
      126500 -- (-2096.728) (-2101.047) (-2106.439) [-2095.051] * (-2096.333) (-2093.113) (-2107.569) [-2097.587] -- 0:04:29
      127000 -- (-2103.372) (-2096.639) (-2093.163) [-2100.314] * [-2095.176] (-2096.569) (-2099.048) (-2093.558) -- 0:04:28
      127500 -- [-2088.758] (-2098.670) (-2103.346) (-2097.477) * (-2091.773) (-2095.070) (-2095.472) [-2093.134] -- 0:04:26
      128000 -- (-2094.220) (-2099.460) [-2090.701] (-2093.388) * (-2092.645) (-2098.471) [-2096.950] (-2096.704) -- 0:04:32
      128500 -- [-2089.949] (-2095.409) (-2099.330) (-2107.726) * (-2096.470) [-2094.515] (-2108.415) (-2092.017) -- 0:04:31
      129000 -- (-2099.486) (-2098.225) (-2095.835) [-2097.747] * [-2093.538] (-2104.125) (-2097.693) (-2101.663) -- 0:04:30
      129500 -- (-2106.423) (-2099.532) [-2097.912] (-2103.710) * (-2100.267) (-2097.813) [-2094.777] (-2100.675) -- 0:04:28
      130000 -- (-2099.209) (-2102.188) [-2095.264] (-2097.890) * [-2092.652] (-2099.398) (-2092.656) (-2101.831) -- 0:04:27

      Average standard deviation of split frequencies: 0.006313