--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Nov 12 03:03:24 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/2/Abl-PH/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -14030.46 -14045.45 2 -14030.35 -14052.16 -------------------------------------- TOTAL -14030.41 -14051.47 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/2/Abl-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.866109 0.001343 0.799140 0.938471 0.865012 1501.00 1501.00 1.000 r(A<->C){all} 0.082519 0.000072 0.065911 0.098710 0.082396 960.07 970.73 1.000 r(A<->G){all} 0.247343 0.000257 0.217282 0.279879 0.247340 774.02 834.48 1.000 r(A<->T){all} 0.167944 0.000293 0.135921 0.203682 0.167428 853.68 911.29 1.002 r(C<->G){all} 0.034157 0.000018 0.025832 0.042249 0.034123 1249.08 1291.70 1.000 r(C<->T){all} 0.377302 0.000364 0.341535 0.416863 0.377052 768.65 916.72 1.000 r(G<->T){all} 0.090735 0.000103 0.071918 0.110587 0.090290 755.60 929.33 1.000 pi(A){all} 0.218501 0.000034 0.206736 0.229292 0.218534 721.37 800.15 1.000 pi(C){all} 0.322814 0.000042 0.309895 0.334795 0.322719 719.95 938.70 1.000 pi(G){all} 0.298373 0.000041 0.285442 0.310422 0.298502 1125.87 1152.91 1.000 pi(T){all} 0.160312 0.000023 0.151152 0.169878 0.160328 1112.03 1164.83 1.000 alpha{1,2} 0.117323 0.000059 0.102551 0.132233 0.117053 1306.95 1329.25 1.000 alpha{3} 6.673444 1.719893 4.478275 9.464101 6.518695 1047.55 1242.06 1.000 pinvar{all} 0.366624 0.000455 0.323033 0.405618 0.366871 1310.94 1365.96 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -12791.345322 Model 2: PositiveSelection -12791.345323 Model 0: one-ratio -12912.29851 Model 3: discrete -12782.246805 Model 7: beta -12784.814636 Model 8: beta&w>1 -12782.44103 Model 0 vs 1 241.90637600000264 Model 2 vs 1 2.0000006770715117E-6 Model 8 vs 7 4.747211999998399
>C1 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSGGLG LQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQA GGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLE KHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYH YRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQN KPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVK TLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHG NLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLV GDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSD VWAFGVLLWEIATYGMSPYPAIDLTDVYHKLDKGYRMERPPGCPPEVYDL MRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSA PSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGGQALTP NAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQA PAPPKRTSLLSSSRDSTYREEDPANARCNFIDDLSTNGLARDINSLTQRY DSETDPAADPDTDATGDSLEQSLSQVIAAPVTNKMQHSLHSGGGGGGIGP RSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQLHSQAPGPGPPSTQPHHG NNGVVTSAHPITVGALDVMNVKQVVNRYGTLPKGARIGAYLDSLEDSSEA APALPATAPSLPPANGHATPPAARLNPKASPIPPQQMIRSNSSGGVTMQN NAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSASGVASGVQPAL ANLEFPPPPLDLPPPPEEFEGGPPPPPPAPESAVQAIQQHLHAQLPNNGN ISNGNGTNNNDSSHNDVSNIAPSVEEASSRFGVSLRKREPSTDSCSSLGS PPEDLKEKLITEIKAAGKDTAPASHLANGSGIAVVDPVSLLVTELAESMN LPKPPPQQQQKLTNGNSTGSGFKAQLKKVEPKKMSAPMPKAEPANTIIDF KAHLRRVDKEKEPATPAPAPATVAVANNANCNTTGTLNRKEDGSKKFSQA MQKTEIKIDVTNSNVEADAGAAGEGDLGKRRSTDDEEQSHTEGLGSGGQG SADMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLTEPASSASSTQI SRESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGA MPPHSKFQFRELVTRVEAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISN ALNRoooooooooooooooooooo >C2 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSGGLG LQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQA GGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLE KHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYH YRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQN KPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVK TLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHG NLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLV GDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSD VWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDL MRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSA PSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLSGGQSLTP NAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQA PAPPKRTSLLSSSRDSTYREEDPANARCNFIDDLSTNGLARDINSLTQRY DSETDPAGDPDTDATGDSLEQSLSQVIAAPATNKMQHSLHSGGGGGGIGP RSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQHHPQAPGPGPPSTQPHHG NNGVLTSAHPITVGALEVMNVKQVVNRYGTLPKGARIGAYLDSLEDSTEA APPLPATAPSLPPANGHATPPSARLNPKASPIPPQQMIRSNSSGGVTMQN NAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSASGLASGVQPAL ANLEFPPPPLDLPPPPEEFEGGPPPPPPAPESAVQAIQQHLHAQLPNNGN ISNGNGSNNNDSSHNDVSNIAPSVEEASSRFGVSLRKREPSTDSCSSLGS PPEDLKEKLITEIKAAGKESAPASHLANGSGIAVVDPVSLLVTELAESMN LPKSPPQQQQKLTNGNGTGSGFKAQLKKVEPKKMSAPMPKAEPASTIIDF KAHLRRVDKEKEPAAPAPAPVAVANNANCNTTGTLNRKEDSSKKFSQAMQ KTEIKIDVTNSNVEADAGATGEGDLGKRRSTDDEEQSHTEGLGSGGQGAA DMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLTEPASSASSTQISR ESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAMP PHSKFQFRELVTRVEAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISNAL NRoooooooooooooooooooooo >C3 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVNSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGSGSGLSQRSGGHKDARCNPT VGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSGGLGL QGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQAG GENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLEK HSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY RISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQNK PTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVKT LKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHGN LLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLVG DNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSDV WAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDLM RQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSAP STSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGGQSLTPN AHHNDSHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQAP APPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGLARDINSLTQRYD SETDPAADPDTDATGDSLEQSLSQVIAAPATNKMQHSLHSGGGGGGIGPR SSQQHSSFKRPTGTPVMGNRGLETRQSKRSQHHPLAPGPGPPATQPHHGN NGVVASAHPITVGALEVMNVKQVVNRYGTLPKVARIGAYLDSLEDSTEAA PALPATAPALPPANGHATPPAARINPKASPIPPQQMIRSNSSGGVTMQNN AAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRNATGAASGVQPALA NLEFPPPPLDLPPPPEEFEGGPPPPPPAPESAVQAIQQHLHAQLPNNGNI SNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLGSP PEDLKEKLITEIKAAGKDSAPASQLANGSGIAVVDPVSLLVTELAESMNL PKPPPQQQKLTNGNGTGSGFKAQLKKVEPKKMSAPIAKAEPANTIIDFKA HLRRVDKEKEPAAPAPAPVAVTNNANCNTTGTLNRKEDSSKKFSQAMQKT EIKIDVTNSNVEADAGAAGEGDLGKRRSTDDEEQSHSDGLGSGGQGAADM TQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLAEPASSASSTQISRDS ILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAMPPH SKFQFRELVTRVEAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISNALNR oooooooooooooooooooooooo >C4 MGAQQGKDRGGHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSSGLG LQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQA GGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLE KHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYH YRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQN KPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVK TLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHG NLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLV GDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSD VWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDL MRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSA PSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGGQSLTP NAHHTDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQA PAPPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGFARDINSLTQRY DSETDPAADPDTDATGDSLEQSLSQVIAAPATNKMQHSLHSGGGGGIGPR SSQQHSSFKRPTGTPVMGNRGLETRQSKRSQHHPLAPGPGPPATQPHHGN NGVVTSAHPITVGALEVMNVKQVVNRYGTLPKGARIGAYLDSLEDSSEAA PALPATAPSLPPANGHATPPAARINPKASPIPPQQMIRSNSSGGVTMQNN AAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSATGVASGVQPALA NLEFPPPPLDLPPPPEEFEGGPPPPPPAPESAVQAIQQHLHAQLPNNGNI SNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLGSP PEDLKEKLITEIKASGKDSAPTSHLANGSGIAVVDPVSQLFTELEESMKL PKPPPQQQKLTNGNGTGSGFKAQLKKVEPKKMCAPMAKAEPANTIIDFKA HLRRVDKEKEPAAPAPAPVPAAAPVAVTNNANCNTTGTLNRKEDSSKKFS QVMQKTEIKIDVTNSNVEADAGAAGEGDLGKRRSTDDEEQSHSDGLGSGG QGAADMTQSLYEQKPQIQQKPVVPHKPTKLTIYATPIAKLAEPASSTQIS RESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAM PPHSKFQFRELVTRVEAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISNA LNRooooooooooooooooooooo >C5 MGAQQGKDRGAHSGGGGSAAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVVSGGGSGGGGGGSGSGLSQRSGGHKDPRCNP SVGLNIFTEHNEALLQSRPLPHIPAGSAAASLLADAAEMQQHQQDSGGLG LQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQA GGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLE KHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYH YRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQN KPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVK TLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHG NLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLV GDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSD VWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDL MRQCWQWDAADRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSST APSTSGVASGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGGQSLT PNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQ APAPPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGLARDINSLTQR YDSETDPTADPDTDATGDSLEHSLSHVIAAPATNKMQQSLHGGGGGIGPR SSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQHPQAPAPAPPPNQLHHGN NGVVTGAQPITVGALEVMNVKRVVNRYGTLPKVTRIGAYLDSLEDNSDAT TAPPAPAPAPPPANGHATPPSARMNPKASPIPPQQMIRSNSSGGVTMQNN AAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSGSGVAAGVQPALA NLEFPPPPLDLPPPPEEFEGAPPPPPPAPESAVQAIQQHLHAQVPNNGNI SNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLGSP PEDLKEKLITEIKAAGKENAPASHVANGSGIAVVDPGSLLVTELAESMNL PKPPPPQQQQQKLTNGNGSGSGFKAQLKKVEPKKMSPPMAKAETASTIID FKAHLRRVDKEKEPPAPAAAPVASQTVTNNANCNTTGTLNRKEDGSRKFA QAMQKTEIKIDVTNSNVEAETAAAGEGDLGKRRSTDDEEQSQSQPEGLGG QVAADMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLAEPASSGSAS STQISRESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFA ENGAMPPHSKFQFRELVTRVEAQSRHLRTAGSKNVQDNERLVAEVGQSLR QISNALNRoooooooooooooooo >C6 MGAQQGKDRGAHSGGGSSVAPVSCIGLSSSPVASVSPHCISSSSGASSAP LGGGSTLRGSRIKNSSSGVVSGGGSGGGGGGSGSGGLSQRSGGHKDSRSN PTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSGGL GLQGATLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQ AGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSL EKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVY HYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQ NKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYNNTVAV KTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSH GNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCL VGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKS DVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYD LMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSS APSTSGVATGGGATSATAASGCASSSSATASLSLTPQMVKKGLPGGQSLT PNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNKQGKQ APAPPKRTSLLSSSRDSTYREEDPATARNNFIDDLTTNGLSRDINSLTQR YDSETDPTADPDTDATGDSLEQNLSHVIAAPANNKMQHSLHSGGGIGPRS SQQHSSFKRPTGTPVMGNRGLETRQSKRSQQHPQAPAPAPPPTPPHHGNG AVTTAHPITVGALEVMNVKRVVNRYGTLPKVARIGAYLDSLEDSSEALPA LPATVPAPPPANGHGTPPAARINPKASPIPPQQMIRSNSSGGVTMQNNAA ASVNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSGSGVGSGAQPALANL EFPPPPLDLPPPPEEFEGIPPPPPPAPESAVQAIQQHLHAQLPNNGNISN GNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLGSPPE DLKEKLITEIKAAGKESAPAPLLANGSGIAAVDPVSLLVTELAESMNLPK PSPPQQKLTNGNSSGSGFKAQLKKVEQKKMSPPMAKAEPANNIIDFKAHL RRVDKEKEPATPAPVAQPVTNNANCNTTGTLNRKEDSSKKFAQAVQKTEI KIDVTNSNVENAETGAAGEGDLGKRRSTDDEEPSHPDGLEQGAPDMTQSL YEQKPQIQQKPAVPHKPTKLTIYATPIAKLAEPASSGSASSTQISRESIL ELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAMPPHSK FQFRELVTRVDAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISNALNRoo oooooooooooooooooooooooo >C7 MGAQQGKDRGAHSGGGSGAPVSCIGLSSSSSPVASVSPHCISSSSGGSSA PLGGGSTIRGSRIKSSSGGVASGVNAGGSGSGLSQRSGGHKDAARCNPVG LNIFTEHNDALLQSRPLPLIPAGSTAASLLADAELQQHQQDSGGLGLQGS SLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQAGGEN QLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLEKHSW YHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRIS EDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQNKPTV FPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVKTLKE DTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHGNLLD FLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLVGDNK LVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSDVWAF GVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDLMRQC WQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSAPSTS GVATGGGATTTTAASGCPSSSSATASLSLTPQMVKKGLPGGQSLAPNAHH NDPHQQPASTPMSETGSSSTKLSTFSSQGKGNVQMRRTTNKQGKQAPAPP KRTSLLSSSRDSTYREEDPANARGNFIDDLSTNGLARDINSLTQRYDSET DPTADPDTDATGDSLEQSLSQVIAAPAANKMQHSLHGGGGGIAPRSSQQH SSFKRPTGTPVMGNRGLETRQSKRSQQHPQTTAPAPPPTQPHHGNNGVVT SAHPITVGALEVMNVKRVVNRYGTLPKVARIGAYLDSLEDSSEAAPALPA AAPTPPPANGHATPPGVRINPKTSPIAPQQMIRSNSSGGVTMQNNAAASL NKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRSGSGVGSGAQPALANLEFP PPPLDLPPPPEEFEGAPPPPPPAPESAVQAIQQHLHAQLPNNGNISNGNG TNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLGSPPEDLK EKLITEIKAAGKDSAPTSHLANGSGIAAVDPVSQLVTELAESMNLPKQTT QQQKLTNGNGSGSGSGFKAQLKKVEPKKMSPPMAKAEPTSSIIDFKAHLR RVDKEKESATPAPVSGAAPQLVTINANTGTLNRKEDSSKKFAQAMQKTEI KIDVTNSNVEAEAGAAGDGDLGKRRSTDDEEQSHQEGPGSGSGSQGATDM TQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLAEPASSTQISRESILE LVGLLEGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAMPPHSKF QFRELVTRVDAQSQHLRSASSKNVQDNERLVAEVGQSLRQISNALNRooo oooooooooooooooooooooooo >C8 MGAQQGKDRGAHSGGGSVAPVSCIGLSSSSSPVASVSPHCISSSSGTSSA PLGGGSTLRGSRIKSSSVGVASGVNAVGSGSGLSQRSGGHKDAARCNPTV GLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDSGGLGLQ GSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALYDFQAGG ENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPLNSLEKH SWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR ISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPAPKQNKP TVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNTVAVKTL KEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEFMSHGNL LDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAARNCLVGD NKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFSTKSDVW AFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPEVYDLMR QCWQWDAADRPTFKSIHHALEHMFQESSITEAVEKQLNANATSASSSAPS TSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGGQSLTPNA HHNDPHQQPASTPMSETGSSSTKLSTFSSQGKGNVQMRRTTNKQGKQAPA PPKRTSLLSSSRDSTYREEDPANARGNFIDDLTTNGLARDINSLTQRYDS ETDPAADPDTDATGDSLEQSLSQVIAAPATNKMQHSLHGGGGGGGGIAPR SSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQHPQTSAPPPPATQAHHGN NGVVASAHPITVGALEVMNVKRVVNRYGTLPKVARIGAYLDSLEDSGEAT TAPPPATAPAPPPANGHATPPGARINPKTSPIAPQQMIRSNSSGGVTMQN NAAASLNKLQRHRTTTEGTMMTFSSFRAGNSSSSPKRSGCGVGPVGAQPA LANLEFPPPPLDLPPPPEEFEGAPPPPPPAPESAVQAIQQHLHAQLPNNG NVSNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKREPSTDSCSSLG SPPEDLKEKLITEIKAAGKESAPASHLANGSGIAAVDPVSLLVTELAESM NLPKQPQSQPTLPQQQQQKLTNGNGSGTGSGSGFKAQLKKVEPKKMSPPM AKAEPASSIIDFKAHLRRVDKEKEPSVPAPAPAAPQLVTNNANTGTLNRK EDSSRKFAQAMQKTEIKIDVTNSNVEADTGAAGEGDLGKRRSTDDEEQSH QEGPGSGSGSGSGLGGQGPADMTQSLYEQKPQIQQKPAVPHKPTKLTIYA TPIAKLAEPASSGSASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQ LSDKLNILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSQHLRSAGSKN VQDNERLVAEVGQSLRQISNALNR CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1565 C1 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C2 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C3 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVNS C4 MGAQQGKDRGGHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C5 MGAQQGKDRGAHSGGGGSAAPVSCIGLSSS--PVASVSPHCISSSSGVSS C6 MGAQQGKDRGAHSGGGSSVAPVSCIGLSSS--PVASVSPHCISSSSGASS C7 MGAQQGKDRGAHSGGG-SGAPVSCIGLSSSSSPVASVSPHCISSSSGGSS C8 MGAQQGKDRGAHSGGG-SVAPVSCIGLSSSSSPVASVSPHCISSSSGTSS **********.***** * *********** *************** .* C1 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C2 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C3 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGG-SGSG-LSQRSGGHKDA- C4 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C5 APLGGGSTLRGSRIKSSSSGVVSGGGSGGGGGGSGSG-LSQRSGGHKDP- C6 APLGGGSTLRGSRIKNSSSGVVSGGGSGGGGGGSGSGGLSQRSGGHKDS- C7 APLGGGSTIRGSRIKSSSGGVASGVNAG----GSGSG-LSQRSGGHKDAA C8 APLGGGSTLRGSRIKSSSVGVASGVNAV----GSGSG-LSQRSGGHKDAA ********:******.** **.** .: **** **********. C1 RCNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS C2 RCNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS C3 RCNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS C4 RCNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS C5 RCNPSVGLNIFTEHNEALLQSRPLPHIPAGSAAASLLADAAEMQQHQQDS C6 RSNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS C7 RCNP-VGLNIFTEHNDALLQSRPLPLIPAGSTAASLLAD-AELQQHQQDS C8 RCNPTVGLNIFTEHNEALLQSRPLPHIPAGSTAASLLADAAELQQHQQDS *.** **********:********* *****:******* **:******* C1 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C2 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C3 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C4 SGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C5 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C6 GGLGLQGATLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C7 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY C8 GGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEEDDPQLFVALY .******::***************************************** C1 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C2 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C3 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C4 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C5 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C6 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C7 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL C8 DFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVGWVPSNYVTPL ************************************************** C1 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C2 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C3 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C4 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C5 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C6 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C7 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG C8 NSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG ************************************************** C1 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C2 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C3 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C4 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C5 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C6 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C7 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA C8 RVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGHGLITPLLYPA ************************************************** C1 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C2 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C3 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C4 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C5 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C6 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYNNT C7 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT C8 PKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVYEAVWKRYGNT ***********************************************.** C1 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C2 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C3 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C4 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C5 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C6 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C7 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF C8 VAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTREPPFYIITEF ************************************************** C1 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C2 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C3 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C4 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C5 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C6 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C7 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR C8 MSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESRNYIHRDLAAR ************************************************** C1 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C2 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C3 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C4 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C5 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C6 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C7 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS C8 NCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTAPEGLAYNKFS ************************************************** C1 TKSDVWAFGVLLWEIATYGMSPYPAIDLTDVYHKLDKGYRMERPPGCPPE C2 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C3 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C4 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C5 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C6 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C7 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE C8 TKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYRMERPPGCPPE ************************.**********:************** C1 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C2 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C3 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C4 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C5 VYDLMRQCWQWDAADRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C6 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C7 VYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA C8 VYDLMRQCWQWDAADRPTFKSIHHALEHMFQESSITEAVEKQLNANATSA *************:************************************ C1 SSS-APSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGG C2 SSS-APSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLSGG C3 SSS-APSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGG C4 SSS-APSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGG C5 SSSTAPSTSGVASGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGG C6 SSS-APSTSGVATGGGATSATAASGCASSSSATASLSLTPQMVKKGLPGG C7 SSS-APSTSGVATGGGATTTTAASGCPSSSSATASLSLTPQMVKKGLPGG C8 SSS-APSTSGVATGGGATTTTAASGCASSSSATASLSLTPQMVKKGLPGG *** ********:*****::******.********************.** C1 QALTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C2 QSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C3 QSLTPNAHHNDSHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C4 QSLTPNAHHTDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C5 QSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C6 QSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQGKGNVQMRRTTNK C7 QSLAPNAHHNDPHQQPASTPMSETGSSSTKLSTFSSQGKGNVQMRRTTNK C8 QSLTPNAHHNDPHQQPASTPMSETGSSSTKLSTFSSQGKGNVQMRRTTNK *:*:*****.*.*** **********:*********************** C1 QGKQAPAPPKRTSLLSSSRDSTYREEDPANARCNFIDDLSTNGLARDINS C2 QGKQAPAPPKRTSLLSSSRDSTYREEDPANARCNFIDDLSTNGLARDINS C3 QGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGLARDINS C4 QGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGFARDINS C5 QGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFIDDLSTNGLARDINS C6 QGKQAPAPPKRTSLLSSSRDSTYREEDPATARNNFIDDLTTNGLSRDINS C7 QGKQAPAPPKRTSLLSSSRDSTYREEDPANARGNFIDDLSTNGLARDINS C8 QGKQAPAPPKRTSLLSSSRDSTYREEDPANARGNFIDDLTTNGLARDINS *****************************.** ******:***::***** C1 LTQRYDSETDPAADPDTDATGDSLEQSLSQVIAAPVTNKMQHSLHSGGGG C2 LTQRYDSETDPAGDPDTDATGDSLEQSLSQVIAAP