--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Nov 12 02:31:40 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/2/Abl-PG/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -14145.78 -14162.07 2 -14145.81 -14161.96 -------------------------------------- TOTAL -14145.80 -14162.02 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/2/Abl-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.850206 0.001258 0.784673 0.920775 0.848807 1220.41 1360.70 1.000 r(A<->C){all} 0.082544 0.000074 0.066486 0.099904 0.082217 889.46 961.19 1.000 r(A<->G){all} 0.245478 0.000240 0.215014 0.275517 0.244912 567.37 639.51 1.000 r(A<->T){all} 0.165948 0.000267 0.132300 0.196264 0.165722 573.63 748.53 1.000 r(C<->G){all} 0.034847 0.000019 0.026865 0.043780 0.034732 1004.72 1125.43 1.000 r(C<->T){all} 0.379158 0.000362 0.340370 0.415053 0.378976 573.66 668.20 1.000 r(G<->T){all} 0.092024 0.000102 0.072911 0.112613 0.091608 967.55 984.13 1.000 pi(A){all} 0.220232 0.000034 0.209390 0.231291 0.220213 677.17 982.02 1.000 pi(C){all} 0.322661 0.000042 0.310194 0.335938 0.322770 921.57 1094.82 1.000 pi(G){all} 0.296366 0.000040 0.284546 0.309180 0.296220 979.60 1061.19 1.000 pi(T){all} 0.160742 0.000024 0.150710 0.169818 0.160702 862.08 891.78 1.000 alpha{1,2} 0.118733 0.000057 0.104837 0.133830 0.118512 1308.81 1380.11 1.000 alpha{3} 6.583351 1.625245 4.283954 9.201803 6.458878 970.19 1233.89 1.000 pinvar{all} 0.372741 0.000455 0.332753 0.414770 0.372817 1372.46 1380.23 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -12880.732526 Model 2: PositiveSelection -12880.732526 Model 0: one-ratio -13002.697438 Model 3: discrete -12871.879053 Model 7: beta -12874.428382 Model 8: beta&w>1 -12872.07025 Model 0 vs 1 243.92982399999892 Model 2 vs 1 0.0 Model 8 vs 7 4.716263999998773
>C1 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAASL LADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAP GPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDS GNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESE SSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVP HEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQY GEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIG VCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSY LESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPI KWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPAIDLTDVYHKLD KGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSIT EAVEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASLS LTPQMVKKGLPGGQALTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQ GKGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPANARCNFID DLSTNGLARDINSLTQRYDSETDPAADPDTDATGDSLEQSLSQVIAAPVT NKMQHSLHSGGGGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQ LHSQAPGPGPPSTQPHHGNNGVVTSAHPITVGALDVMNVKQVVNRYGTLP KGARIGAYLDSLEDSSEAAPALPATAPSLPPANGHATPPAARLNPKASPI PPQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSS SSPKRSASGVASGVQPALANLEFPPPPLDLPPPPEEFEGGPPPPPPAPES AVQAIQQHLHAQLPNNGNISNGNGTNNNDSSHNDVSNIAPSVEEASSRFG VSLRKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKDTAPASHLANGSGI AVVDPVSLLVTELAESMNLPKPPPQQQQKLTNGNSTGSGFKAQLKKVEPK KMSAPMPKAEPANTIIDFKAHLRRVDKEKEPATPAPAPATVAVANNANCN TTGTLNRKEDGSKKFSQAMQKTEIKIDVTNSNVEADAGAAGEGDLGKRRS TDDEEQSHTEGLGSGGQGSADMTQSLYEQKPQIQQKPAVPHKPTKLTIYA TPIAKLTEPASSASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQLS DKLNILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSQHLRSAGSKNVQ DNERLVAEVGQSLRQISNALNRoooooooooooooooooooo >C2 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAASL LADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAP GPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDS GNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESE SSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVP HEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQY GEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIG VCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSY LESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPI KWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLE KGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSIT EAVEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASLS LTPQMVKKGLSGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSSQ GKGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPANARCNFID DLSTNGLARDINSLTQRYDSETDPAGDPDTDATGDSLEQSLSQVIAAPAT NKMQHSLHSGGGGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQ HHPQAPGPGPPSTQPHHGNNGVLTSAHPITVGALEVMNVKQVVNRYGTLP KGARIGAYLDSLEDSTEAAPPLPATAPSLPPANGHATPPSARLNPKASPI PPQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSS SSPKRSASGLASGVQPALANLEFPPPPLDLPPPPEEFEGGPPPPPPAPES AVQAIQQHLHAQLPNNGNISNGNGSNNNDSSHNDVSNIAPSVEEASSRFG VSLRKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKESAPASHLANGSGI AVVDPVSLLVTELAESMNLPKSPPQQQQKLTNGNGTGSGFKAQLKKVEPK KMSAPMPKAEPASTIIDFKAHLRRVDKEKEPAAPAPAPVAVANNANCNTT GTLNRKEDSSKKFSQAMQKTEIKIDVTNSNVEADAGATGEGDLGKRRSTD DEEQSHTEGLGSGGQGAADMTQSLYEQKPQIQQKPAVPHKPTKLTIYATP IAKLTEPASSASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQLSDK LNILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSQHLRSAGSKNVQDN ERLVAEVGQSLRQISNALNRoooooooooooooooooooooo >C3 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVNSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGSGSGLSQRSGGHKDARCNPT VGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAASLL ADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPG PEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSG NVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESES SPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPH EGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYG EVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGV CTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYL ESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIK WTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEK GYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITE AVEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASLSL TPQMVKKGLPGGQSLTPNAHHNDSHQQQASTPMSETGSTSTKLSTFSSQG KGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFIDD LSTNGLARDINSLTQRYDSETDPAADPDTDATGDSLEQSLSQVIAAPATN KMQHSLHSGGGGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQH HPLAPGPGPPATQPHHGNNGVVASAHPITVGALEVMNVKQVVNRYGTLPK VARIGAYLDSLEDSTEAAPALPATAPALPPANGHATPPAARINPKASPIP PQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSS SPKRNATGAASGVQPALANLEFPPPPLDLPPPPEEFEGGPPPPPPAPESA VQAIQQHLHAQLPNNGNISNGNGTNNNDSSHNDVSNTAPSVEEASSRFGV SLRKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKDSAPASQLANGSGIA VVDPVSLLVTELAESMNLPKPPPQQQKLTNGNGTGSGFKAQLKKVEPKKM SAPIAKAEPANTIIDFKAHLRRVDKEKEPAAPAPAPVAVTNNANCNTTGT LNRKEDSSKKFSQAMQKTEIKIDVTNSNVEADAGAAGEGDLGKRRSTDDE EQSHSDGLGSGGQGAADMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIA KLAEPASSASSTQISRDSILELVGLLEGSLKHPVNAIAGSQWLQLSDKLN ILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSQHLRSAGSKNVQDNER LVAEVGQSLRQISNALNRoooooooooooooooooooooooo >C4 MGAQQGKDRGGHSGGGGSGAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSGLSQRSGGHKDARCNP TVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAASL LADAAELQQHQQDSSGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAP GPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDS GNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESE SSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVP HEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQY GEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIG VCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSY LESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPI KWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLE KGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSIT EAVEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASLS LTPQMVKKGLPGGQSLTPNAHHTDPHQQQASTPMSETGSTSTKLSTFSSQ GKGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFID DLSTNGFARDINSLTQRYDSETDPAADPDTDATGDSLEQSLSQVIAAPAT NKMQHSLHSGGGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQH HPLAPGPGPPATQPHHGNNGVVTSAHPITVGALEVMNVKQVVNRYGTLPK GARIGAYLDSLEDSSEAAPALPATAPSLPPANGHATPPAARINPKASPIP PQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSS SPKRSATGVASGVQPALANLEFPPPPLDLPPPPEEFEGGPPPPPPAPESA VQAIQQHLHAQLPNNGNISNGNGTNNNDSSHNDVSNTAPSVEEASSRFGV SLRKREPSTDSCSSLGSPPEDLKEKLITEIKASGKDSAPTSHLANGSGIA VVDPVSQLFTELEESMKLPKPPPQQQKLTNGNGTGSGFKAQLKKVEPKKM CAPMAKAEPANTIIDFKAHLRRVDKEKEPAAPAPAPVPAAAPVAVTNNAN CNTTGTLNRKEDSSKKFSQVMQKTEIKIDVTNSNVEADAGAAGEGDLGKR RSTDDEEQSHSDGLGSGGQGAADMTQSLYEQKPQIQQKPVVPHKPTKLTI YATPIAKLAEPASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQLSD KLNILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSQHLRSAGSKNVQD NERLVAEVGQSLRQISNALNRooooooooooooooooooooo >C5 MGAQQGKDRGAHSGGGGSAAPVSCIGLSSSPVASVSPHCISSSSGVSSAP LGGGSTLRGSRIKSSSSGVVSGGGSGGGGGGSGSGLSQRSGGHKDPRCNP SVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSAAASL LADAAEMQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAP GPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDS GNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESE SSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVP HEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQY GEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIG VCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSY LESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPI KWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLE KGYRMERPPGCPPEVYDLMRQCWQWDAADRPTFKSIHHALEHMFQESSIT EAVEKQLNANATSASSSTAPSTSGVASGGGATTTTAASGCASSSSATASL SLTPQMVKKGLPGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSS QGKGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPATARCNFI DDLSTNGLARDINSLTQRYDSETDPTADPDTDATGDSLEHSLSHVIAAPA TNKMQQSLHGGGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQ HPQAPAPAPPPNQLHHGNNGVVTGAQPITVGALEVMNVKRVVNRYGTLPK VTRIGAYLDSLEDNSDATTAPPAPAPAPPPANGHATPPSARMNPKASPIP PQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSS SPKRSGSGVAAGVQPALANLEFPPPPLDLPPPPEEFEGAPPPPPPAPESA VQAIQQHLHAQVPNNGNISNGNGTNNNDSSHNDVSNTAPSVEEASSRFGV SLRKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKENAPASHVANGSGIA VVDPGSLLVTELAESMNLPKPPPPQQQQQKLTNGNGSGSGFKAQLKKVEP KKMSPPMAKAETASTIIDFKAHLRRVDKEKEPPAPAAAPVASQTVTNNAN CNTTGTLNRKEDGSRKFAQAMQKTEIKIDVTNSNVEAETAAAGEGDLGKR RSTDDEEQSQSQPEGLGGQVAADMTQSLYEQKPQIQQKPAVPHKPTKLTI YATPIAKLAEPASSGSASSTQISRESILELVGLLEGSLKHPVNAIAGSQW LQLSDKLNILHNSCVIFAENGAMPPHSKFQFRELVTRVEAQSRHLRTAGS KNVQDNERLVAEVGQSLRQISNALNRoooooooooooooooo >C6 MGAQQGKDRGAHSGGGSSVAPVSCIGLSSSPVASVSPHCISSSSGASSAP LGGGSTLRGSRIKNSSSGVVSGGGSGGGGGGSGSGGLSQRSGGHKDSRSN PTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAAS LLADAAELQQHQQDSGGLGLQGATLGGGHSSTTSVFESAHRWTSKENLLA PGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSD SGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRES ESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSV PHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQ YGEVYEAVWKRYNNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLI GVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMS YLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFP IKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKL EKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSI TEAVEKQLNANATSASSSAPSTSGVATGGGATSATAASGCASSSSATASL SLTPQMVKKGLPGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLSTFSS QGKGNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPATARNNFI DDLTTNGLSRDINSLTQRYDSETDPTADPDTDATGDSLEQNLSHVIAAPA NNKMQHSLHSGGGIGPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQH PQAPAPAPPPTPPHHGNGAVTTAHPITVGALEVMNVKRVVNRYGTLPKVA RIGAYLDSLEDSSEALPALPATVPAPPPANGHGTPPAARINPKASPIPPQ QMIRSNSSGGVTMQNNAAASVNKLQRHRTTTEGTMMTFSSFRAGGSSSSP KRSGSGVGSGAQPALANLEFPPPPLDLPPPPEEFEGIPPPPPPAPESAVQ AIQQHLHAQLPNNGNISNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSL RKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKESAPAPLLANGSGIAAV DPVSLLVTELAESMNLPKPSPPQQKLTNGNSSGSGFKAQLKKVEQKKMSP PMAKAEPANNIIDFKAHLRRVDKEKEPATPAPVAQPVTNNANCNTTGTLN RKEDSSKKFAQAVQKTEIKIDVTNSNVENAETGAAGEGDLGKRRSTDDEE PSHPDGLEQGAPDMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIAKLAE PASSGSASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNIL HNSCVIFAENGAMPPHSKFQFRELVTRVDAQSQHLRSAGSKNVQDNERLV AEVGQSLRQISNALNRoooooooooooooooooooooooooo >C7 MGAQQGKDRGAHSGGGSGAPVSCIGLSSSSSPVASVSPHCISSSSGGSSA PLGGGSTIRGSRIKSSSGGVASGVNAGGSGSGLSQRSGGHKDAARCNPVG LNIFTEHNGTKHSSFRGHPGKYHMNLDALLQSRPLPLIPAGSTAASLLAD AELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGPEE DDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGNVG WVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESSPG QRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHEGH GLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGEVY EAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVCTR EPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLESR NYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKWTA PEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKGYR MERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQESSITEAVE KQLNANATSASSSAPSTSGVATGGGATTTTAASGCPSSSSATASLSLTPQ MVKKGLPGGQSLAPNAHHNDPHQQPASTPMSETGSSSTKLSTFSSQGKGN VQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPANARGNFIDDLST NGLARDINSLTQRYDSETDPTADPDTDATGDSLEQSLSQVIAAPAANKMQ HSLHGGGGGIAPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQHPQTT APAPPPTQPHHGNNGVVTSAHPITVGALEVMNVKRVVNRYGTLPKVARIG AYLDSLEDSSEAAPALPAAAPTPPPANGHATPPGVRINPKTSPIAPQQMI RSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGGSSSSPKRS GSGVGSGAQPALANLEFPPPPLDLPPPPEEFEGAPPPPPPAPESAVQAIQ QHLHAQLPNNGNISNGNGTNNNDSSHNDVSNTAPSVEEASSRFGVSLRKR EPSTDSCSSLGSPPEDLKEKLITEIKAAGKDSAPTSHLANGSGIAAVDPV SQLVTELAESMNLPKQTTQQQKLTNGNGSGSGSGFKAQLKKVEPKKMSPP MAKAEPTSSIIDFKAHLRRVDKEKESATPAPVSGAAPQLVTINANTGTLN RKEDSSKKFAQAMQKTEIKIDVTNSNVEAEAGAAGDGDLGKRRSTDDEEQ SHQEGPGSGSGSQGATDMTQSLYEQKPQIQQKPAVPHKPTKLTIYATPIA KLAEPASSTQISRESILELVGLLEGSLKHPVNAIAGSQWLQLSDKLNILH NSCVIFAENGAMPPHSKFQFRELVTRVDAQSQHLRSASSKNVQDNERLVA EVGQSLRQISNALNRooooooooooooooooooooooooooo >C8 MGAQQGKDRGAHSGGGSVAPVSCIGLSSSSSPVASVSPHCISSSSGTSSA PLGGGSTLRGSRIKSSSVGVASGVNAVGSGSGLSQRSGGHKDAARCNPTV GLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSTAASLLA DAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKENLLAPGP EEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEAHSDSGN VGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLVRESESS PGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHHHSVPHE GHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLGGGQYGE VYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLVQLIGVC TREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIASGMSYLE SRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGAKFPIKW TAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVYHKLEKG YRMERPPGCPPEVYDLMRQCWQWDAADRPTFKSIHHALEHMFQESSITEA VEKQLNANATSASSSAPSTSGVATGGGATTTTAASGCASSSSATASLSLT PQMVKKGLPGGQSLTPNAHHNDPHQQPASTPMSETGSSSTKLSTFSSQGK GNVQMRRTTNKQGKQAPAPPKRTSLLSSSRDSTYREEDPANARGNFIDDL TTNGLARDINSLTQRYDSETDPAADPDTDATGDSLEQSLSQVIAAPATNK MQHSLHGGGGGGGGIAPRSSQQHSSFKRPTGTPVMGNRGLETRQSKRSQQ HPQTSAPPPPATQAHHGNNGVVASAHPITVGALEVMNVKRVVNRYGTLPK VARIGAYLDSLEDSGEATTAPPPATAPAPPPANGHATPPGARINPKTSPI APQQMIRSNSSGGVTMQNNAAASLNKLQRHRTTTEGTMMTFSSFRAGNSS SSPKRSGCGVGPVGAQPALANLEFPPPPLDLPPPPEEFEGAPPPPPPAPE SAVQAIQQHLHAQLPNNGNVSNGNGTNNNDSSHNDVSNTAPSVEEASSRF GVSLRKREPSTDSCSSLGSPPEDLKEKLITEIKAAGKESAPASHLANGSG IAAVDPVSLLVTELAESMNLPKQPQSQPTLPQQQQQKLTNGNGSGTGSGS GFKAQLKKVEPKKMSPPMAKAEPASSIIDFKAHLRRVDKEKEPSVPAPAP AAPQLVTNNANTGTLNRKEDSSRKFAQAMQKTEIKIDVTNSNVEADTGAA GEGDLGKRRSTDDEEQSHQEGPGSGSGSGSGLGGQGPADMTQSLYEQKPQ IQQKPAVPHKPTKLTIYATPIAKLAEPASSGSASSTQISRESILELVGLL EGSLKHPVNAIAGSQWLQLSDKLNILHNSCVIFAENGAMPPHSKFQFREL VTRVEAQSQHLRSAGSKNVQDNERLVAEVGQSLRQISNALNR CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1583 C1 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C2 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C3 MGAQQGKDRGAHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVNS C4 MGAQQGKDRGGHSGGGGSGAPVSCIGLSSS--PVASVSPHCISSSSGVSS C5 MGAQQGKDRGAHSGGGGSAAPVSCIGLSSS--PVASVSPHCISSSSGVSS C6 MGAQQGKDRGAHSGGGSSVAPVSCIGLSSS--PVASVSPHCISSSSGASS C7 MGAQQGKDRGAHSGGG-SGAPVSCIGLSSSSSPVASVSPHCISSSSGGSS C8 MGAQQGKDRGAHSGGG-SVAPVSCIGLSSSSSPVASVSPHCISSSSGTSS **********.***** * *********** *************** .* C1 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C2 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C3 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGG-SGSG-LSQRSGGHKDA- C4 APLGGGSTLRGSRIKSSSSGVASGSGSGGGGGGSGSG-LSQRSGGHKDA- C5 APLGGGSTLRGSRIKSSSSGVVSGGGSGGGGGGSGSG-LSQRSGGHKDP- C6 APLGGGSTLRGSRIKNSSSGVVSGGGSGGGGGGSGSGGLSQRSGGHKDS- C7 APLGGGSTIRGSRIKSSSGGVASGVNAG----GSGSG-LSQRSGGHKDAA C8 APLGGGSTLRGSRIKSSSVGVASGVNAV----GSGSG-LSQRSGGHKDAA ********:******.** **.** .: **** **********. C1 RCNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST C2 RCNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST C3 RCNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST C4 RCNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST C5 RCNPSVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGSA C6 RSNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST C7 RCNP-VGLNIFTEHNGTKHSSFRGHPGKYHMNLDALLQSRPLPLIPAGST C8 RCNPTVGLNIFTEHNGTKHSSFRGHPGKYHMNLEALLQSRPLPHIPAGST *.** ****************************:********* *****: C1 AASLLADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C2 AASLLADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C3 AASLLADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C4 AASLLADAAELQQHQQDSSGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C5 AASLLADAAEMQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C6 AASLLADAAELQQHQQDSGGLGLQGATLGGGHSSTTSVFESAHRWTSKEN C7 AASLLAD-AELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN C8 AASLLADAAELQQHQQDSGGLGLQGSSLGGGHSSTTSVFESAHRWTSKEN ******* **:*******.******::*********************** C1 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C2 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C3 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C4 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C5 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C6 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C7 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA C8 LLAPGPEEDDPQLFVALYDFQAGGENQLSLKKGEQVRILSYNKSGEWCEA ************************************************** C1 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C2 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C3 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C4 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C5 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C6 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C7 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV C8 HSDSGNVGWVPSNYVTPLNSLEKHSWYHGPISRNAAEYLLSSGINGSFLV ************************************************** C1 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C2 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C3 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C4 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C5 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C6 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C7 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH C8 RESESSPGQRSISLRYEGRVYHYRISEDPDGKVFVTQEAKFNTLAELVHH ************************************************** C1 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C2 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C3 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C4 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C5 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C6 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C7 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG C8 HSVPHEGHGLITPLLYPAPKQNKPTVFPLSPEPDEWEICRTDIMMKHKLG ************************************************** C1 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C2 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C3 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C4 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C5 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C6 GGQYGEVYEAVWKRYNNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C7 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV C8 GGQYGEVYEAVWKRYGNTVAVKTLKEDTMALKDFLEEAAIMKEMKHPNLV ***************.********************************** C1 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C2 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C3 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C4 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C5 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C6 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C7 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS C8 QLIGVCTREPPFYIITEFMSHGNLLDFLRSAGRETLDAVALLYMATQIAS ************************************************** C1 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C2 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C3 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C4 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C5 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C6 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C7 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA C8 GMSYLESRNYIHRDLAARNCLVGDNKLVKVADFGLARLMRDDTYTAHAGA ************************************************** C1 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPAIDLTDVY C2 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C3 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C4 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C5 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C6 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C7 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY C8 KFPIKWTAPEGLAYNKFSTKSDVWAFGVLLWEIATYGMSPYPGIDLTDVY ******************************************.******* C1 HKLDKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C2 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C3 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C4 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C5 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDAADRPTFKSIHHALEHMFQE C6 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C7 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDATDRPTFKSIHHALEHMFQE C8 HKLEKGYRMERPPGCPPEVYDLMRQCWQWDAADRPTFKSIHHALEHMFQE ***:***************************:****************** C1 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCASSSSA C2 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCASSSSA C3 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCASSSSA C4 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCASSSSA C5 SSITEAVEKQLNANATSASSSTAPSTSGVASGGGATTTTAASGCASSSSA C6 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATSATAASGCASSSSA C7 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCPSSSSA C8 SSITEAVEKQLNANATSASSS-APSTSGVATGGGATTTTAASGCASSSSA ********************* ********:*****::******.***** C1 TASLSLTPQMVKKGLPGGQALTPNAHHNDPHQQQASTPMSETGSTSTKLS C2 TASLSLTPQMVKKGLSGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLS C3 TASLSLTPQMVKKGLPGGQSLTPNAHHNDSHQQQASTPMSETGSTSTKLS C4 TASLSLTPQMVKKGLPGGQSLTPNAHHTDPHQQQASTPMSETGSTSTKLS C5 TASLSLTPQMVKKGLPGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLS C6 TASLSLTPQMVKKGLPGGQSLTPNAHHNDPHQQQASTPMSETGSTSTKLS C7 TASLSLTPQMVKKGLPGGQSLAPNAHHNDPHQQPASTPMSETGSSSTKLS C8 TASLSLTPQMVKKGLPGGQSLTPNAHHNDPHQQPASTPMSETGSSSTKLS