--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 11 21:52:27 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/Abi-PE/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3944.03 -3958.31
2 -3944.09 -3964.17
--------------------------------------
TOTAL -3944.06 -3963.48
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/Abi-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.956518 0.005686 0.819423 1.118478 0.955359 1166.52 1247.22 1.000
r(A<->C){all} 0.055010 0.000177 0.032157 0.083274 0.054064 990.73 1139.11 1.000
r(A<->G){all} 0.319255 0.001114 0.253291 0.386427 0.317820 922.07 972.54 1.000
r(A<->T){all} 0.159344 0.000994 0.102704 0.224127 0.157224 711.44 838.39 1.000
r(C<->G){all} 0.031639 0.000051 0.018316 0.045206 0.031146 1130.13 1188.37 1.000
r(C<->T){all} 0.386114 0.001197 0.321355 0.455105 0.386183 978.04 1040.97 1.002
r(G<->T){all} 0.048638 0.000208 0.021648 0.077031 0.047523 1147.36 1221.34 1.000
pi(A){all} 0.220625 0.000104 0.200419 0.240161 0.220491 1287.98 1298.64 1.001
pi(C){all} 0.328173 0.000138 0.306511 0.352275 0.328179 1071.91 1199.13 1.000
pi(G){all} 0.285506 0.000128 0.261918 0.305932 0.285623 1181.91 1245.33 1.000
pi(T){all} 0.165696 0.000081 0.148897 0.183432 0.165700 950.02 1052.61 1.000
alpha{1,2} 0.066096 0.000068 0.050733 0.081988 0.066106 1335.11 1418.05 1.000
alpha{3} 4.630906 1.193542 2.845840 6.985967 4.493865 1405.56 1453.28 1.000
pinvar{all} 0.472128 0.000914 0.416150 0.532770 0.471928 1434.81 1467.90 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -3680.675787
Model 2: PositiveSelection -3680.675787
Model 0: one-ratio -3692.099337
Model 3: discrete -3679.899025
Model 7: beta -3683.299666
Model 8: beta&w>1 -3680.691199
Model 0 vs 1 22.847099999999955
Model 2 vs 1 0.0
Model 8 vs 7 5.2169340000000375
>C1
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C2
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C3
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C4
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C5
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C6
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C7
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C8
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPNAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C9
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
>C10
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
WWEGVMDGVTGLFPGNYVEPCV
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=472
C1 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C2 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C3 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C4 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C5 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C6 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C7 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C8 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C9 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C10 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
****:*********************************************
C1 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C2 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C3 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C4 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C5 RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C6 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C7 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C8 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C9 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C10 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
**:***.*******************************************
C1 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C2 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C3 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C4 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C5 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C6 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C7 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C8 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C9 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C10 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
**************************************************
C1 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C2 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C3 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C4 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C5 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C6 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C7 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C8 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C9 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C10 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
******************.*******************************
C1 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C2 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C3 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C4 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C5 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C6 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C7 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C8 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C9 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C10 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
**************************************************
C1 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C2 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C3 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C4 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C5 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C6 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C7 NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C8 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C9 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C10 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
****************:*********************************
C1 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C2 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C3 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C4 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C5 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C6 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C7 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C8 NLPNAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C9 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
C10 NLPSAGMMQSLPPPPPTTYDDRSSMPPPPSPLTVSQHEMTEQSHIGMHTL
***.**********************************************
C1 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C2 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C3 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C4 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C5 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C6 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C7 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C8 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C9 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
C10 GRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPI
**************************************************
C1 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C2 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C3 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C4 VPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C5 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C6 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C7 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C8 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C9 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
C10 VPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDG
**:***********************************************
C1 WWEGVMDGVTGLFPGNYVEPCV
C2 WWEGVMDGVTGLFPGNYVEPCV
C3 WWEGVMDGVTGLFPGNYVEPCV
C4 WWEGVMDGVTGLFPGNYVEPCV
C5 WWEGVMDGVTGLFPGNYVEPCV
C6 WWEGVMDGVTGLFPGNYVEPCV
C7 WWEGVMDGVTGLFPGNYVEPCV
C8 WWEGVMDGVTGLFPGNYVEPCV
C9 WWEGVMDGVTGLFPGNYVEPCV
C10 WWEGVMDGVTGLFPGNYVEPCV
**********************
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 472 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 472 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 472 type PROTEIN Struct Unchecked
