--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Nov 11 20:44:54 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/2/Abi-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -3954.03 -3973.85 2 -3954.46 -3969.37 -------------------------------------- TOTAL -3954.22 -3973.17 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/2/Abi-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.955801 0.005628 0.806104 1.096672 0.952944 1346.63 1423.81 1.000 r(A<->C){all} 0.053246 0.000160 0.028072 0.077301 0.052261 991.61 1086.98 1.000 r(A<->G){all} 0.314062 0.001114 0.252099 0.382486 0.313350 966.27 979.07 1.000 r(A<->T){all} 0.164666 0.000968 0.101885 0.223920 0.163497 754.61 788.03 1.001 r(C<->G){all} 0.031333 0.000047 0.017945 0.044875 0.030848 1308.94 1312.33 1.000 r(C<->T){all} 0.388136 0.001200 0.315711 0.453314 0.388557 832.61 901.04 1.000 r(G<->T){all} 0.048557 0.000202 0.021802 0.076304 0.047874 753.42 791.49 1.000 pi(A){all} 0.221282 0.000103 0.200286 0.240421 0.221427 915.25 1102.50 1.000 pi(C){all} 0.328104 0.000140 0.306656 0.352922 0.328093 1087.32 1163.55 1.000 pi(G){all} 0.285548 0.000127 0.263448 0.307530 0.285548 1170.54 1237.75 1.000 pi(T){all} 0.165066 0.000082 0.147548 0.182796 0.165071 1293.68 1306.87 1.000 alpha{1,2} 0.066136 0.000073 0.049662 0.081723 0.066030 838.57 1159.69 1.000 alpha{3} 4.614202 1.165110 2.701510 6.804171 4.493416 1501.00 1501.00 1.000 pinvar{all} 0.470024 0.000846 0.414413 0.528212 0.469691 1115.26 1308.13 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -3691.898917 Model 2: PositiveSelection -3691.898918 Model 0: one-ratio -3703.327638 Model 3: discrete -3691.134512 Model 7: beta -3694.530284 Model 8: beta&w>1 -3691.912942 Model 0 vs 1 22.857442000000447 Model 2 vs 1 1.99999976757681E-6 Model 8 vs 7 5.234684000000016
>C1 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C2 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C3 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C4 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C5 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C6 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C7 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C8 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPNAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C9 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV >C10 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD GWWEGVMDGVTGLFPGNYVEPCV CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=473 C1 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C2 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C3 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C4 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C5 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C6 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C7 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C8 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C9 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY C10 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY ****:********************************************* C1 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C2 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C3 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C4 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C5 RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C6 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C7 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C8 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C9 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES C10 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES **:***.******************************************* C1 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C2 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C3 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C4 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C5 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C6 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C7 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C8 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C9 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR C10 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR ************************************************** C1 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C2 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C3 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C4 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C5 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C6 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C7 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C8 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C9 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK C10 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK ******************.******************************* C1 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C2 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C3 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C4 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C5 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C6 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C7 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C8 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C9 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP C10 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP ************************************************** C1 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C2 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C3 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C4 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C5 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C6 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C7 NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C8 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C9 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV C10 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV ****************:********************************* C1 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C2 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C3 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C4 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C5 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C6 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C7 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C8 NLPNAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C9 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT C10 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT ***.********************************************** C1 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C2 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C3 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C4 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C5 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C6 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C7 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C8 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C9 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP C10 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP ************************************************** C1 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C2 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C3 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C4 IVPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C5 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C6 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C7 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C8 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C9 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD C10 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD ***:********************************************** C1 GWWEGVMDGVTGLFPGNYVEPCV C2 GWWEGVMDGVTGLFPGNYVEPCV C3 GWWEGVMDGVTGLFPGNYVEPCV C4 GWWEGVMDGVTGLFPGNYVEPCV C5 GWWEGVMDGVTGLFPGNYVEPCV C6 GWWEGVMDGVTGLFPGNYVEPCV C7 GWWEGVMDGVTGLFPGNYVEPCV C8 GWWEGVMDGVTGLFPGNYVEPCV C9 GWWEGVMDGVTGLFPGNYVEPCV C10 GWWEGVMDGVTGLFPGNYVEPCV *********************** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: s S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/2/Abi-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw