--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 11 20:19:38 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/Abi-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3954.35 -3974.77
2 -3954.54 -3971.86
--------------------------------------
TOTAL -3954.44 -3974.13
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/Abi-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.953528 0.005704 0.807614 1.099075 0.950284 1443.06 1455.01 1.001
r(A<->C){all} 0.053906 0.000162 0.027524 0.077171 0.053192 1138.17 1162.19 1.000
r(A<->G){all} 0.314501 0.001099 0.249703 0.379210 0.312805 919.43 974.48 1.001
r(A<->T){all} 0.164969 0.000932 0.108757 0.224665 0.162886 804.56 904.95 1.000
r(C<->G){all} 0.031159 0.000048 0.019118 0.045443 0.030533 1185.76 1270.89 1.000
r(C<->T){all} 0.386091 0.001163 0.322261 0.454340 0.385102 864.44 944.35 1.000
r(G<->T){all} 0.049375 0.000211 0.020603 0.076355 0.048608 912.34 953.58 1.000
pi(A){all} 0.220783 0.000112 0.200952 0.241977 0.220667 930.08 1026.32 1.000
pi(C){all} 0.328447 0.000135 0.306140 0.350834 0.328276 892.11 1076.80 1.001
pi(G){all} 0.285481 0.000132 0.262476 0.306722 0.285684 1255.69 1370.08 1.000
pi(T){all} 0.165289 0.000081 0.147479 0.182365 0.165007 1044.50 1175.55 1.001
alpha{1,2} 0.066306 0.000065 0.050729 0.082129 0.066261 1141.59 1300.53 1.000
alpha{3} 4.633312 1.208690 2.568076 6.634260 4.503091 1259.56 1380.28 1.001
pinvar{all} 0.470342 0.000878 0.409975 0.528390 0.471152 1470.77 1485.88 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -3691.898917
Model 2: PositiveSelection -3691.898918
Model 0: one-ratio -3703.327638
Model 3: discrete -3691.134512
Model 7: beta -3694.530284
Model 8: beta&w>1 -3691.912942
Model 0 vs 1 22.857442000000447
Model 2 vs 1 1.99999976757681E-6
Model 8 vs 7 5.234684000000016
>C1
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C2
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C3
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C4
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C5
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C6
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C7
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C8
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPNAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C9
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
>C10
MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=473
C1 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C2 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C3 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C4 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C5 MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C6 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C7 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C8 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C9 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
C10 MLTEAPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
****:*********************************************
C1 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C2 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C3 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C4 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C5 RAENKKVALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C6 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C7 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C8 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C9 RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
C10 RAENKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
**:***.*******************************************
C1 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C2 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C3 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C4 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C5 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C6 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C7 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C8 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C9 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
C10 QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
**************************************************
C1 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C2 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C3 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C4 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C5 KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C6 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C7 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C8 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C9 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
C10 KPIDYSMLDEIGHGINSASHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
******************.*******************************
C1 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C2 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C3 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C4 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C5 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C6 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C7 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C8 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C9 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
C10 PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
**************************************************
C1 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C2 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C3 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C4 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C5 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C6 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C7 NYPIGHPKRMSTASSTITTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C8 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C9 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
C10 NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
****************:*********************************
C1 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C2 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C3 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C4 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C5 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C6 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C7 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C8 NLPNAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C9 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
C10 NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
***.**********************************************
C1 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C2 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C3 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C4 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C5 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C6 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C7 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C8 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C9 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
C10 LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
**************************************************
C1 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C2 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C3 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C4 IVPDDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C5 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C6 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C7 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C8 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C9 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
C10 IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
***:**********************************************
C1 GWWEGVMDGVTGLFPGNYVEPCV
C2 GWWEGVMDGVTGLFPGNYVEPCV
C3 GWWEGVMDGVTGLFPGNYVEPCV
C4 GWWEGVMDGVTGLFPGNYVEPCV
C5 GWWEGVMDGVTGLFPGNYVEPCV
C6 GWWEGVMDGVTGLFPGNYVEPCV
C7 GWWEGVMDGVTGLFPGNYVEPCV
C8 GWWEGVMDGVTGLFPGNYVEPCV
C9 GWWEGVMDGVTGLFPGNYVEPCV
C10 GWWEGVMDGVTGLFPGNYVEPCV
***********************
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/Abi-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw 