--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 11 17:34:05 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/ABCB7-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -7700.69         -7717.39
2      -7701.05         -7715.28
--------------------------------------
TOTAL    -7700.85         -7716.81
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         1.502802    0.007182    1.347444    1.673827    1.501075   1246.15   1287.36    1.000
r(A<->C){all}   0.079835    0.000131    0.057750    0.102748    0.079573   1025.50   1059.76    1.001
r(A<->G){all}   0.237089    0.000402    0.198626    0.278028    0.236658    879.07    908.80    1.000
r(A<->T){all}   0.141402    0.000402    0.103107    0.182204    0.140770    864.27    919.89    1.001
r(C<->G){all}   0.027551    0.000026    0.017572    0.037257    0.027258   1184.22   1192.77    1.000
r(C<->T){all}   0.449736    0.000645    0.400285    0.501709    0.449674    774.37    784.15    1.000
r(G<->T){all}   0.064387    0.000107    0.046541    0.086654    0.063722    907.08   1004.62    1.000
pi(A){all}      0.211035    0.000067    0.196003    0.227622    0.211164    913.29   1015.25    1.000
pi(C){all}      0.302316    0.000082    0.283989    0.319251    0.302278   1048.26   1101.02    1.000
pi(G){all}      0.295581    0.000091    0.277268    0.314605    0.295482    825.35   1015.20    1.000
pi(T){all}      0.191068    0.000054    0.176700    0.205377    0.191015    872.45   1026.79    1.000
alpha{1,2}      0.116948    0.000056    0.102995    0.131543    0.116638   1338.16   1346.73    1.000
alpha{3}        4.403286    0.879923    2.744822    6.235712    4.296762   1340.02   1420.51    1.000
pinvar{all}     0.334329    0.000618    0.287191    0.386216    0.334738   1329.26   1415.13    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-7190.261099
Model 2: PositiveSelection	-7190.261101
Model 0: one-ratio	-7254.638532
Model 3: discrete	-7179.130026
Model 7: beta	-7182.975817
Model 8: beta&w>1	-7179.758185


Model 0 vs 1	128.7548659999993

Model 2 vs 1	3.99999953515362E-6

Model 8 vs 7	6.435263999999734

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ABCB7-PB)

            Pr(w>1)     post mean +- SE for w

    31 T      0.639         1.160 +- 0.483
   469 S      0.666         1.188 +- 0.472
   515 A      0.597         1.112 +- 0.507
   660 R      0.582         1.054 +- 0.566
   694 I      0.832         1.366 +- 0.345
   699 A      0.868         1.394 +- 0.340

>C1
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEV
AAKKTRGVAo
>C2
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEV
EAKKTRGVAo
>C3
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEDV
EAKKTRGVAo
>C4
MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGNDGGSRLGKLDAPEVT
SKDMLRAMMAYIWPKEDPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSRGNKEEA
AAKETRGVAo
>C5
MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SQDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVEKAARMADLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEE
TPAKESRGVA
>C6
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSRETKEEA
PTKKSRGVAo
>C7
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMMRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEG
PTKKSRGVAo
>C8
MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAILSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGHVGERGTHSELLRQNGLYARLWETQTQQFDPTREIKEEA
EAKKSRGAAo
>C9
MAGLIYLTKQCSIHLPAHLGRAKCYTLAKGSHVQARVLFSSLAKVDDQGK
NDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGGSDGGPGLGKLDAPEVTSK
DMLRAMMAYIWPKEDPVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVDTM
TTLNMDTAPDAVLSAATAMMLGYGIARASASGFNELRNAVFAKVAHHSIR
KIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVP
TIFELALVSSILGIKCGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVYMN
QAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSS
LALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIP
LGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIE
FRNVSFEYEPGKPIFKDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFE
PNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTK
SHAEVENAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAI
LKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDA
DEILVLENGRVGEQGTHSELLRKNGLYARLWETQTHQFDPSRDSKEEATA
KASRGVAooo
>C10
MAGLLHLTKKCSIHLPAHLGRAKCYTFVKGTHVQARVLYSSLVKAEDQGN
SDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVTSK
DMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTM
TTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIR
KIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVP
TIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMN
QAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYETASLKTSSS
LALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIP
LGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIE
FRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFE
PNSGKVLVGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTK
SHAEVENAARMADLHESIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAI
LKNTPILIFDEATSSLDSITEHNILQALTRATTGRTSICIAHRLSTVKDA
DEILVLENGRVGERGTHPELLRQNGLYARLWETQTQQFDPSRESKDEAAA
KKARGVAooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=713 

C1              MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C2              MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C3              MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C4              MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
C5              MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
C6              MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
C7              MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
C8              MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
C9              MAGLIYLTKQCSIHLPAHLGRAKCYTLAKG--SHVQARVLFSSLAKVDDQ
C10             MAGLLHLTKKCSIHLPAHLGRAKCYTFVKG--THVQARVLYSSLVKAEDQ
                ****::***:******.********::.*    **:****:***.*.:*:

C1              NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C2              NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C3              NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C4              NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGNDGGSRLGKLDAPEVT
C5              SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C6              GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGGSDGGSGLGKLDAPEVT
C7              GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C8              GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C9              GKNDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGGSDGGPGLGKLDAPEVT
C10             GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
                ...*.*:**:*****************:*.****.***. **********

C1              SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C2              SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C3              SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C4              SKDMLRAMMAYIWPKEDPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C5              SQDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C6              SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C7              SKDMMRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C8              SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C9              SKDMLRAMMAYIWPKEDPVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVD
C10             SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
                *:**:*************:*****.*************************

C1              TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C2              TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C3              TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C4              TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C5              TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C6              TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C7              TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C8              TMTTLNMDTAPDAILSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C9              TMTTLNMDTAPDAVLSAATAMMLGYGIARASASGFNELRNAVFAKVAHHS
C10             TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
                *************:**:***:***********:*****************

C1              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C2              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C3              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C4              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C5              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C6              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C7              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C8              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C9              IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C10             IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
                **************************************************

C1              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C2              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C3              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C4              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C5              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C6              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C7              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C8              VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C9              VPTIFELALVSSILGIKCGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVY
C10             VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
                ***************:******************.**************:

C1              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C2              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C3              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C4              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C5              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C6              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C7              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C8              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C9              MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C10             MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYETASLKTS
                *******************************************:******

C1              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C2              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C3              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C4              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C5              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C6              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C7              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C8              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C9              SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C10             SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
                **************************************************

C1              IPLGFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C2              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C3              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C4              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C5              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C6              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C7              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C8              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C9              IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSS
C10             IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSS
                ********************:********** ****:*********:***

C1              IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C2              IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C3              IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C4              IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C5              IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C6              IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRF
C7              IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C8              IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C9              IEFRNVSFEYEPGKPIFKDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C10             IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
                ******.**********:*****************************:**

C1              FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C2              FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C3              FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C4              FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C5              FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C6              FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C7              FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C8              FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C9              FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C10             FEPNSGKVLVGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
                *********:****** *********************************

C1              SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C2              SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C3              SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C4              SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C5              SKSHEEVEKAARMADLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIAR
C6              SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C7              SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C8              SKSHAEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C9              TKSHAEVENAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C10             TKSHAEVENAARMADLHESIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
                :*** **::********:******.**:**********************

C1              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C2              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C3              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C4              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C5              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C6              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C7              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C8              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C9              AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C10             AILKNTPILIFDEATSSLDSITEHNILQALTRATTGRTSICIAHRLSTVK
                **********************************:***************

C1              DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C2              DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C3              DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINED-
C4              DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSRGNKEE-
C5              DADEILVLENGQLGERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEE
C6              DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSRETKEE-
C7              DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C8              DADEILVLENGHVGERGTHSELLRQNGLYARLWETQTQQFDPTREIKEE-
C9              DADEILVLENGRVGEQGTHSELLRKNGLYARLWETQTHQFDPSRDSKEE-
C10             DADEILVLENGRVGERGTHPELLRQNGLYARLWETQTQQFDPSRESKDE-
                ***********::**:*** ***::************:****:*  ::: 

C1              VAAKKTRGVAo--
C2              VEAKKTRGVAo--
C3              VEAKKTRGVAo--
C4              AAAKETRGVAo--
C5              TPAKESRGVA---
C6              APTKKSRGVAo--
C7              GPTKKSRGVAo--
C8              AEAKKSRGAAo--
C9              ATAKASRGVAooo
C10             AAAKKARGVAooo
                  :* :**.*   




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  710 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  710 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  710 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  710 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  710 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/2/ABCB7-