--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 11 17:34:05 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/ABCB7-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -7700.69 -7717.39
2 -7701.05 -7715.28
--------------------------------------
TOTAL -7700.85 -7716.81
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/ABCB7-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.502802 0.007182 1.347444 1.673827 1.501075 1246.15 1287.36 1.000
r(A<->C){all} 0.079835 0.000131 0.057750 0.102748 0.079573 1025.50 1059.76 1.001
r(A<->G){all} 0.237089 0.000402 0.198626 0.278028 0.236658 879.07 908.80 1.000
r(A<->T){all} 0.141402 0.000402 0.103107 0.182204 0.140770 864.27 919.89 1.001
r(C<->G){all} 0.027551 0.000026 0.017572 0.037257 0.027258 1184.22 1192.77 1.000
r(C<->T){all} 0.449736 0.000645 0.400285 0.501709 0.449674 774.37 784.15 1.000
r(G<->T){all} 0.064387 0.000107 0.046541 0.086654 0.063722 907.08 1004.62 1.000
pi(A){all} 0.211035 0.000067 0.196003 0.227622 0.211164 913.29 1015.25 1.000
pi(C){all} 0.302316 0.000082 0.283989 0.319251 0.302278 1048.26 1101.02 1.000
pi(G){all} 0.295581 0.000091 0.277268 0.314605 0.295482 825.35 1015.20 1.000
pi(T){all} 0.191068 0.000054 0.176700 0.205377 0.191015 872.45 1026.79 1.000
alpha{1,2} 0.116948 0.000056 0.102995 0.131543 0.116638 1338.16 1346.73 1.000
alpha{3} 4.403286 0.879923 2.744822 6.235712 4.296762 1340.02 1420.51 1.000
pinvar{all} 0.334329 0.000618 0.287191 0.386216 0.334738 1329.26 1415.13 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -7190.261099
Model 2: PositiveSelection -7190.261101
Model 0: one-ratio -7254.638532
Model 3: discrete -7179.130026
Model 7: beta -7182.975817
Model 8: beta&w>1 -7179.758185
Model 0 vs 1 128.7548659999993
Model 2 vs 1 3.99999953515362E-6
Model 8 vs 7 6.435263999999734
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ABCB7-PB)
Pr(w>1) post mean +- SE for w
31 T 0.639 1.160 +- 0.483
469 S 0.666 1.188 +- 0.472
515 A 0.597 1.112 +- 0.507
660 R 0.582 1.054 +- 0.566
694 I 0.832 1.366 +- 0.345
699 A 0.868 1.394 +- 0.340
>C1
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEV
AAKKTRGVAo
>C2
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEV
EAKKTRGVAo
>C3
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEDV
EAKKTRGVAo
>C4
MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGNDGGSRLGKLDAPEVT
SKDMLRAMMAYIWPKEDPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSRGNKEEA
AAKETRGVAo
>C5
MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SQDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVEKAARMADLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEE
TPAKESRGVA
>C6
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSRETKEEA
PTKKSRGVAo
>C7
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMMRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSREINEEG
PTKKSRGVAo
>C8
MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
TMTTLNMDTAPDAILSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
SKSHAEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
DADEILVLENGHVGERGTHSELLRQNGLYARLWETQTQQFDPTREIKEEA
EAKKSRGAAo
>C9
MAGLIYLTKQCSIHLPAHLGRAKCYTLAKGSHVQARVLFSSLAKVDDQGK
NDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGGSDGGPGLGKLDAPEVTSK
DMLRAMMAYIWPKEDPVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVDTM
TTLNMDTAPDAVLSAATAMMLGYGIARASASGFNELRNAVFAKVAHHSIR
KIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVP
TIFELALVSSILGIKCGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVYMN
QAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSS
LALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIP
LGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIE
FRNVSFEYEPGKPIFKDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFE
PNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTK
SHAEVENAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAI
LKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDA
DEILVLENGRVGEQGTHSELLRKNGLYARLWETQTHQFDPSRDSKEEATA
KASRGVAooo
>C10
MAGLLHLTKKCSIHLPAHLGRAKCYTFVKGTHVQARVLYSSLVKAEDQGN
SDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVTSK
DMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTM
TTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIR
KIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVP
TIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMN
QAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYETASLKTSSS
LALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIP
LGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIE
FRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFE
PNSGKVLVGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTK
SHAEVENAARMADLHESIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAI
LKNTPILIFDEATSSLDSITEHNILQALTRATTGRTSICIAHRLSTVKDA
DEILVLENGRVGERGTHPELLRQNGLYARLWETQTQQFDPSRESKDEAAA
KKARGVAooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=713
C1 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C2 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C3 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C4 MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
C5 MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
C6 MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
C7 MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
C8 MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
C9 MAGLIYLTKQCSIHLPAHLGRAKCYTLAKG--SHVQARVLFSSLAKVDDQ
C10 MAGLLHLTKKCSIHLPAHLGRAKCYTFVKG--THVQARVLYSSLVKAEDQ
****::***:******.********::.* **:****:***.*.:*:
C1 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C2 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C3 NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C4 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGNDGGSRLGKLDAPEVT
C5 SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C6 GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGGSDGGSGLGKLDAPEVT
C7 GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C8 GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
C9 GKNDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGGSDGGPGLGKLDAPEVT
C10 GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGGSDGGSGLGKLDAPEVT
...*.*:**:*****************:*.****.***. **********
C1 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C2 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C3 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C4 SKDMLRAMMAYIWPKEDPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C5 SQDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C6 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C7 SKDMMRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C8 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
C9 SKDMLRAMMAYIWPKEDPVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVD
C10 SKDMLRAMMAYIWPKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVD
*:**:*************:*****.*************************
C1 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C2 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C3 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C4 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C5 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C6 TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C7 TMTTLNMDTAPDAVLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C8 TMTTLNMDTAPDAILSTATALMLGYGIARASAAGFNELRNAVFAKVAHHS
C9 TMTTLNMDTAPDAVLSAATAMMLGYGIARASASGFNELRNAVFAKVAHHS
C10 TMTTLNMDTAPDAVLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHS
*************:**:***:***********:*****************
C1 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C2 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C3 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C4 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C5 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C6 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C7 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C8 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C9 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
C10 IRKIASNVFLHLHNLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNI
**************************************************
C1 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C2 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C3 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C4 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C5 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C6 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVF
C7 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C8 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
C9 VPTIFELALVSSILGIKCGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVY
C10 VPTIFELALVSSILGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVY
***************:******************.**************:
C1 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C2 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C3 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C4 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C5 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C6 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C7 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C8 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C9 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTS
C10 MNQAENEAGNKAVDSLINYETVKYFNNEKYEAGCYNEVLKKYETASLKTS
*******************************************:******
C1 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C2 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C3 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C4 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C5 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C6 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C7 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C8 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C9 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
C10 SSLALLNFGQNAIFSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLS
**************************************************
C1 IPLGFLGSVYREVRQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C2 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C3 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C4 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSS
C5 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C6 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C7 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C8 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSS
C9 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSS
C10 IPLGFLGSVYREVRQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSS
********************:********** ****:*********:***
C1 IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C2 IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C3 IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C4 IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C5 IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C6 IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRF
C7 IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C8 IEFRNVSFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C9 IEFRNVSFEYEPGKPIFKDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
C10 IEFRNVNFEYEPGKPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRF
******.**********:*****************************:**
C1 FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C2 FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C3 FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C4 FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C5 FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C6 FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C7 FEPNSGKVLIGGQDISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C8 FEPNSGKVLIGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C9 FEPNSGKVLIGGQDISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
C10 FEPNSGKVLVGGQDISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNL
*********:****** *********************************
C1 SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C2 SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C3 SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C4 SKSHAEVQNAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C5 SKSHEEVEKAARMADLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIAR
C6 SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C7 SKSHEEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C8 SKSHAEVENAARMADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
C9 TKSHAEVENAARMADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIAR
C10 TKSHAEVENAARMADLHESIMSWPAQYSTQVGERGLKLSGGEKQRVAIAR
:*** **::********:******.**:**********************
C1 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C2 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C3 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C4 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C5 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C6 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C7 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C8 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C9 AILKNTPILIFDEATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVK
C10 AILKNTPILIFDEATSSLDSITEHNILQALTRATTGRTSICIAHRLSTVK
**********************************:***************
C1 DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C2 DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C3 DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSREINED-
C4 DADEILVLENGRVGERGTHSELLRQNGLYARLWETQTQQFDPSRGNKEE-
C5 DADEILVLENGQLGERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEE
C6 DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSRETKEE-
C7 DADEILVLENGQLGERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-
C8 DADEILVLENGHVGERGTHSELLRQNGLYARLWETQTQQFDPTREIKEE-
C9 DADEILVLENGRVGEQGTHSELLRKNGLYARLWETQTHQFDPSRDSKEE-
C10 DADEILVLENGRVGERGTHPELLRQNGLYARLWETQTQQFDPSRESKDE-
***********::**:*** ***::************:****:* :::
C1 VAAKKTRGVAo--
C2 VEAKKTRGVAo--
C3 VEAKKTRGVAo--
C4 AAAKETRGVAo--
C5 TPAKESRGVA---
C6 APTKKSRGVAo--
C7 GPTKKSRGVAo--
C8 AEAKKSRGAAo--
C9 ATAKASRGVAooo
C10 AAAKKARGVAooo
:* :**.*
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 710 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 710 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 710 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 710 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 710 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7- 