--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 11 17:04:09 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/2/ABCB7-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -7973.10 -7986.89
2 -7973.05 -7988.71
--------------------------------------
TOTAL -7973.08 -7988.16
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/2/ABCB7-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.409626 0.006486 1.251543 1.561081 1.408305 1272.09 1330.19 1.000
r(A<->C){all} 0.077086 0.000124 0.056399 0.099712 0.076838 1012.87 1109.67 1.000
r(A<->G){all} 0.227190 0.000383 0.188361 0.263023 0.226774 847.46 1024.54 1.000
r(A<->T){all} 0.137132 0.000362 0.098660 0.173385 0.136753 822.52 900.44 1.000
r(C<->G){all} 0.028982 0.000027 0.018645 0.038956 0.028720 1095.63 1143.76 1.001
r(C<->T){all} 0.461812 0.000658 0.411074 0.512743 0.461533 920.34 1002.94 1.000
r(G<->T){all} 0.067798 0.000110 0.047511 0.088103 0.067304 969.95 1044.32 1.000
pi(A){all} 0.220383 0.000070 0.203899 0.236401 0.220303 1097.16 1121.65 1.000
pi(C){all} 0.300917 0.000078 0.283410 0.317892 0.300846 1088.05 1103.46 1.000
pi(G){all} 0.289890 0.000084 0.272413 0.307317 0.289698 1170.42 1196.01 1.000
pi(T){all} 0.188810 0.000053 0.173914 0.201926 0.188720 983.15 1123.81 1.000
alpha{1,2} 0.121273 0.000061 0.106808 0.136932 0.120674 1308.02 1396.03 1.000
alpha{3} 4.293818 0.851835 2.642309 6.069091 4.181074 1388.79 1444.89 1.000
pinvar{all} 0.357515 0.000648 0.306166 0.406049 0.357983 1156.18 1202.27 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -7461.223666
Model 2: PositiveSelection -7461.223666
Model 0: one-ratio -7529.150783
Model 3: discrete -7452.626183
Model 7: beta -7456.63158
Model 8: beta&w>1 -7453.226744
Model 0 vs 1 135.85423400000036
Model 2 vs 1 0.0
Model 8 vs 7 6.809672000001228
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ABCB7-PA)
Pr(w>1) post mean +- SE for w
31 T 0.686 1.207 +- 0.455
97 P 0.710 1.218 +- 0.468
502 S 0.721 1.241 +- 0.439
548 A 0.657 1.173 +- 0.476
693 R 0.591 1.060 +- 0.559
727 I 0.885 1.408 +- 0.281
732 A 0.861 1.379 +- 0.329
>C1
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAAKTTTLQRQRP
YRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPKE
DPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLS
AATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLD
LAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGV
KCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVDSL
INYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSS
ALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQA
LLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVSFEYEPGKPI
FRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDIS
AVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARMADL
HDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATS
SLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGER
GTHSELLRQNGLYARLWETQTQQFDPSREINEEVAAKKTRGVAooo
>C2
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAAKTTTLQRQRP
YRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPKE
DPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLS
AATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLD
LAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGV
KCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVDSL
INYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSS
ALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQA
LLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVNFEYEPGKPI
FRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDIS
AVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARMADL
HDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATS
SLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGER
GTHSELLRQNGLYARLWETQTQQFDPSREINEEVEAKKTRGVAooo
>C3
MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAAKTTTLQRQRP
YRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPKE
DPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLS
AATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLD
LAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGV
KCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVDSL
INYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSS
ALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQA
LLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVNFEYEPGKPI
FRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDIS
AVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARMADL
HDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATS
SLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGER
GTHSELLRQNGLYARLWETQTQQFDPSREINEDVEAKKTRGVAooo
>C4
MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAAKTTTLQRQRL
YRPQQQQSRLCHVHIGGGNDGGSRLGKLDAPEVTSKDMLRAMMAYIWPKE
DPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLS
AATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLD
LAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGV
KCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVDSL
INYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSS
ALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQA
LLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVSFEYEPGKPI
FRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDIS
TVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARMADL
HDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATS
SLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGER
GTHSELLRQNGLYARLWETQTQQFDPSRGNKEEAAAKETRGVAooo
>C5
MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAATTTTLQRQRQ
RLYRPQQQQSRQCHVHLGGGSDGGSGLGKLDAPEVTSQDMLRAMMAYIWP
KEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAV
LSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHN
LDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSIL
GVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAVD
SLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIF
SSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVR
QALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVNFEYEPGK
PIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQD
ISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVEKAARMA
DLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEA
TSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQLG
ERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEETPAKESRGVA
>C6
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGAPAAAAAKTTTLQRQRR
LYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPK
EDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVL
STATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNL
DLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILG
VKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAVDS
LINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFS
SALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQ
ALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVSFEYEPGKP
IFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRFFEPNSGKVLIGGQDI
STVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVENAARMAD
LHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEAT
SSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQLGE
RGTHSELLRQNGLYARLWETQTQQFDPSRETKEEAPTKKSRGVAoo
>C7
MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAAKTTTLQRQRR
LYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMMRAMMAYIWPK
EDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVL
STATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNL
DLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILG
VKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAVDS
LINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFS
SALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQ
ALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVNFEYEPGKP
IFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDI
STVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVENAARMAD
LHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEAT
SSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQLGE
RGTHSELLRQNGLYARLWETQTQQFDPSREINEEGPTKKSRGVAoo
>C8
MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAASAKTTTLQRQRPY
RPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPKED
PLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAILST
ATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLDL
AFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGVK
CGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAVDSLI
NYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSSA
LSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQAL
LDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVSFEYEPGKPIF
RDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDISA
VDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVENAARMADLH
DSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATSS
LDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGHVGERG
THSELLRQNGLYARLWETQTQQFDPTREIKEEAEAKKSRGAAoooo
>C9
MAGLIYLTKQCSIHLPAHLGRAKCYTLAKGSHVQARVLFSSLAKVDDQGK
NDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGAPATAAAAKTTKLQRQRPY
RPQQQQSRQCHVHIGGGSDGGPGLGKLDAPEVTSKDMLRAMMAYIWPKED
PVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLSA
ATAMMLGYGIARASASGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLDL
AFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGIK
CGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVYMNQAENEAGNKAVDSLI
NYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAIFSSA
LSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQAL
LDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIEFRNVSFEYEPGKPIF
KDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQDISG
VDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTKSHAEVENAARMADLH
DSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATSS
LDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRVGEQG
THSELLRKNGLYARLWETQTHQFDPSRDSKEEATAKASRGVAoooo
>C10
MAGLLHLTKKCSIHLPAHLGRAKCYTFVKGTHVQARVLYSSLVKAEDQGN
SDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAPAAAAKTTKLQRQRLYRP
QQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIWPKEDPL
VRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDAVLSAAT
ALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLHNLDLAF
HLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSILGVKCG
LAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAVDSLINY
ETVKYFNNEKYEAGCYNEVLKKYETASLKTSSSLALLNFGQNAIFSSALS
LIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREVRQALLD
MQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIEFRNVNFEYEPGKPIFRD
LSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLVGGQDISAVD
LESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTKSHAEVENAARMADLHES
IMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDEATSSLD
SITEHNILQALTRATTGRTSICIAHRLSTVKDADEILVLENGRVGERGTH
PELLRQNGLYARLWETQTQQFDPSRESKDEAAAKKARGVAoooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=753
C1 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C2 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C3 MAGLLHLTKQCSIHLPAHLGRAKCYTLAKGPGTHVQARVLYSSLTKVDDK
C4 MAGLLHLTKQCSIHLPAHLGRAKCYSLAKGPVTHVQARVLYSSLTKVDDQ
C5 MAGLLHLTKQCSIHLPGHLGRAKCYTLAKGTGVHVQARVLYSSLAKVDDQ
C6 MAGLLHLTKQCSIHLPAHLGRAKCYTFAKGTGTHVHARVLYSSLAKVNDQ
C7 MAGLLHLTKQCSIHLPAHLGRAKCYTFAKRTGTHVQARVLYSSLAKVDDQ
C8 MAGLLHLTKQCSIHLPAHLGRAKCYTFVKGTGKHVQARVLYSSLAKVDDQ
C9 MAGLIYLTKQCSIHLPAHLGRAKCYTLAKG--SHVQARVLFSSLAKVDDQ
C10 MAGLLHLTKKCSIHLPAHLGRAKCYTFVKG--THVQARVLYSSLVKAEDQ
****::***:******.********::.* **:****:***.*.:*:
C1 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAAKTTTLQRQR
C2 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAAKTTTLQRQR
C3 NSNDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAAKTTTLQRQR
C4 NSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAAKTTTLQRQR
C5 SSSDAKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAATTTTLQRQR
C6 GSSDVKHKKITPFTPTPGSKLLGGVFGKKGKGGAPA-AAAAKTTTLQRQR
C7 GSSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAPA-AAAAKTTTLQRQR
C8 GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAP--AASAKTTTLQRQR
C9 GKNDVKRKKVTPFTPTPGSKLLGGVFGNKAKGGAPATAAAAKTTKLQRQR
C10 GNSDVKRKKITPFTPTPGSKLLGGVFGKKAKGGAP--AAAAKTTKLQRQR
...*.*:**:*****************:*.***** **:*.**.*****
C1 --PYRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
C2 --PYRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
C3 --PYRPQQQQSRLCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
C4 --LYRPQQQQSRLCHVHIGGGNDGGSRLGKLDAPEVTSKDMLRAMMAYIW
C5 QRLYRPQQQQSRQCHVHLGGGSDGGSGLGKLDAPEVTSQDMLRAMMAYIW
C6 -RLYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
C7 -RLYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMMRAMMAYIW
C8 --PYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
C9 --PYRPQQQQSRQCHVHIGGGSDGGPGLGKLDAPEVTSKDMLRAMMAYIW
C10 --LYRPQQQQSRQCHVHIGGGSDGGSGLGKLDAPEVTSKDMLRAMMAYIW
********* ****:***.***. ***********:**:********
C1 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C2 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C3 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C4 PKEDPMVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C5 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C6 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C7 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C8 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C9 PKEDPVVRKRVAISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
C10 PKEDPLVRKRVGISLGLLAGSKLLTVCVPFLFKGAVDTMTTLNMDTAPDA
*****:*****.**************************************
C1 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C2 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C3 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C4 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C5 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C6 VLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C7 VLSTATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C8 ILSTATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C9 VLSAATAMMLGYGIARASASGFNELRNAVFAKVAHHSIRKIASNVFLHLH
C10 VLSAATALMLGYGIARASAAGFNELRNAVFAKVAHHSIRKIASNVFLHLH
:**:***:***********:******************************
C1 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C2 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C3 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C4 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C5 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C6 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C7 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C8 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C9 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
C10 NLDLAFHLNKQTGALSKTIDRGSRGINFVLSAMVFNIVPTIFELALVSSI
**************************************************
C1 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAV
C2 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAV
C3 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAV
C4 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAV
C5 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAV
C6 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVFMNQAENEAGNKAV
C7 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAV
C8 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAV
C9 LGIKCGLAFAGVSMGCVGIYAVYTLSVTQWRTQFRVYMNQAENEAGNKAV
C10 LGVKCGLAFAGVSMGCVGIYAAYTLSVTQWRTQFRVYMNQAENEAGNKAV
**:******************.**************:*************
C1 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C2 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C3 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C4 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C5 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C6 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C7 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C8 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C9 DSLINYETVKYFNNEKYEAGCYNEVLKKYEAASLKTSSSLALLNFGQNAI
C10 DSLINYETVKYFNNEKYEAGCYNEVLKKYETASLKTSSSLALLNFGQNAI
******************************:*******************
C1 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C2 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C3 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C4 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C5 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C6 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C7 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C8 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C9 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
C10 FSSALSLIMVLAAKEIAQGNMTVGDLVMVNALLFQLSIPLGFLGSVYREV
**************************************************
C1 RQALLDMRAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVSFEYEPG
C2 RQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVNFEYEPG
C3 RQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVNFEYEPG
C4 RQALLDMQAMFTLMNVDSSIQTAANAQPLFVDTTNSSIEFRNVSFEYEPG
C5 RQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVNFEYEPG
C6 RQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVSFEYEPG
C7 RQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVNFEYEPG
C8 RQALLDMQAMFTLMNVDSRIQTAANAQPLFVDTTNSSIEFRNVSFEYEPG
C9 RQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIEFRNVSFEYEPG
C10 RQALLDMQAMFTLMNVDSSIQTASNAQPLFVDTSNSSIEFRNVNFEYEPG
*******:********** ****:*********:*********.******
C1 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C2 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C3 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C4 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C5 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C6 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLYRFFEPNSGKVLIGGQ
C7 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C8 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C9 KPIFKDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLIGGQ
C10 KPIFRDLSFTIPAGKNVAIVGGSGSGKSSMVRLLFRFFEPNSGKVLVGGQ
****:*****************************:***********:***
C1 DISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARM
C2 DISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARM
C3 DISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARM
C4 DISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVQNAARM
C5 DISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVEKAARM
C6 DISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVENAARM
C7 DISTVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHEEVENAARM
C8 DISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLSKSHAEVENAARM
C9 DISGVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTKSHAEVENAARM
C10 DISAVDLESLRKVIAVVPQDSVLFHNTIEHNIHYGNLTKSHAEVENAARM
*** *********************************:*** **::****
C1 ADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C2 ADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C3 ADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C4 ADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C5 ADLHDSIMSWPAQYATQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C6 ADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C7 ADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C8 ADLHDSIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C9 ADLHDSIMSWPGQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
C10 ADLHESIMSWPAQYSTQVGERGLKLSGGEKQRVAIARAILKNTPILIFDE
****:******.**:***********************************
C1 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRV
C2 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRV
C3 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRV
C4 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRV
C5 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQL
C6 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQL
C7 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGQL
C8 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGHV
C9 ATSSLDSITEHNILQALTRATSGRTSICIAHRLSTVKDADEILVLENGRV
C10 ATSSLDSITEHNILQALTRATTGRTSICIAHRLSTVKDADEILVLENGRV
*********************:**************************::
C1 GERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-VAAKKTRGVAooo
C2 GERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-VEAKKTRGVAooo
C3 GERGTHSELLRQNGLYARLWETQTQQFDPSREINED-VEAKKTRGVAooo
C4 GERGTHSELLRQNGLYARLWETQTQQFDPSRGNKEE-AAAKETRGVAooo
C5 GERGTHLELLKQNGLYARLWETQTQQFDPSREAKEEETPAKESRGVA---
C6 GERGTHSELLRQNGLYARLWETQTQQFDPSRETKEE-APTKKSRGVAoo-
C7 GERGTHSELLRQNGLYARLWETQTQQFDPSREINEE-GPTKKSRGVAoo-
C8 GERGTHSELLRQNGLYARLWETQTQQFDPTREIKEE-AEAKKSRGAAooo
C9 GEQGTHSELLRKNGLYARLWETQTHQFDPSRDSKEE-ATAKASRGVAooo
C10 GERGTHPELLRQNGLYARLWETQTQQFDPSRESKDE-AAAKKARGVAooo
**:*** ***::************:****:* ::: :* :**.*
C1 ---
C2 ---
C3 ---
C4 ---
C5 ---
C6 ---
C7 ---
C8 o--
C9 o--
C10 ooo
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 746 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/2/ABCB7-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 746 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILE 