--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Mon Nov 21 16:20:57 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/295/Lmpt-PM/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -4141.86         -4160.01
2      -4141.80         -4156.01
--------------------------------------
TOTAL    -4141.83         -4159.34
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/295/Lmpt-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.500223    0.002145    0.412972    0.592323    0.498228   1501.00   1501.00    1.000
r(A<->C){all}   0.092858    0.000340    0.058891    0.129441    0.091540   1043.51   1131.64    1.000
r(A<->G){all}   0.204133    0.000942    0.146319    0.264355    0.202371    977.58   1054.71    1.000
r(A<->T){all}   0.046953    0.000350    0.012285    0.082013    0.045330    794.99    925.75    1.000
r(C<->G){all}   0.051348    0.000128    0.030017    0.073213    0.050797   1209.14   1225.92    1.000
r(C<->T){all}   0.535350    0.001550    0.456512    0.611452    0.535366    963.67   1029.16    1.000
r(G<->T){all}   0.069358    0.000267    0.038329    0.102471    0.068246    877.16    977.47    1.000
pi(A){all}      0.219367    0.000100    0.198708    0.238150    0.219650   1053.47   1116.33    1.000
pi(C){all}      0.298150    0.000115    0.276813    0.318337    0.298014    961.44   1104.24    1.000
pi(G){all}      0.290965    0.000112    0.271250    0.312069    0.290894    883.04   1138.81    1.000
pi(T){all}      0.191518    0.000083    0.173908    0.209926    0.191369    997.05   1021.21    1.000
alpha{1,2}      0.107475    0.000212    0.081435    0.137617    0.106815   1501.00   1501.00    1.000
alpha{3}        3.729828    0.953840    2.141716    5.842506    3.608277   1404.89   1433.09    1.000
pinvar{all}     0.627889    0.000725    0.577561    0.680453    0.628289   1078.02   1172.85    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-3834.881355
Model 2: PositiveSelection	-3834.881359
Model 0: one-ratio	-3863.560487
Model 3: discrete	-3832.951588
Model 7: beta	-3845.475824
Model 8: beta&w>1	-3833.04792


Model 0 vs 1	57.35826400000042

Model 2 vs 1	7.999999979801942E-6

Model 8 vs 7	24.855808000000252

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Lmpt-PM)

            Pr(w>1)     post mean +- SE for w

    13 T      0.986*        2.193
   109 V      1.000**       2.224
   126 M      1.000**       2.224

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Lmpt-PM)

            Pr(w>1)     post mean +- SE for w

    13 T      0.771         1.819 +- 1.099
   109 V      0.862         1.936 +- 0.925
   126 M      0.952*        2.126 +- 0.923

>C1
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C2
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C3
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C4
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGARASTRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C5
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGARASSRINRYFEQLPDEVVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C6
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDDVVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPQCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C7
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGLRASSRINRYFEQLPDEAVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPFDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNLLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C8
MTPSPTKELMSDTPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C9
MTPSPTKELMSAGPTISRRPREEFAEKGAIIREIEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGARASSRINRYFEQLPEEAVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AELLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
>C10
MTPSPTKELMSAGPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGARASSRINRYFEQLPEEAVPRLGSDGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
VAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=559 

C1              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C2              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C3              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C4              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C5              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C6              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C7              MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C8              MTPSPTKELMSDTPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
C9              MTPSPTKELMSAGPTISRRPREEFAEKGAIIREIEDGVRCEQCKSDCPGF
C10             MTPSPTKELMSAGPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
                ***********  ********************:****************

C1              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C2              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C3              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C4              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C5              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C6              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C7              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C8              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C9              AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
C10             AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
                **************************************************

C1              GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
C2              GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
C3              GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
C4              GFTWVPPGARASTRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQD
C5              GFTWVPPGARASSRINRYFEQLPDEVVPRLGSEGACSRERQISYQLPKQD
C6              GFTWVPPGVRASSRINRYFEQLPDDVVPRLGSEGACSRERQISYQLPKQD
C7              GFTWVPPGLRASSRINRYFEQLPDEAVPRLGSEGACSRERQISYQLPKQD
C8              GFTWVPPGVRASSRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQD
C9              GFTWVPPGARASSRINRYFEQLPEEAVPRLGSEGACSRERQISYQLPKQD
C10             GFTWVPPGARASSRINRYFEQLPEEAVPRLGSDGACSRERQISYQLPKQD
                ******** ***:**********:: ******:*****************

C1              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C2              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C3              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C4              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C5              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C6              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C7              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPFDEHCAHCDNEI
C8              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C9              LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
C10             LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
                **************************************:***********

C1              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C2              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C3              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C4              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C5              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C6              AAGELVVAAPKFVESVMWHPQCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C7              AAGELVVAAPKFVESVMWHPKCFTCSTCNLLLVDLTYCVHDDKVYCERHY
C8              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C9              AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
C10             VAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
                .*******************:******** ********************

C1              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C2              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C3              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C4              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C5              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C6              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C7              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C8              AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C9              AELLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
C10             AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
                **:***********************************************

C1              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C2              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C3              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C4              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C5              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C6              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C7              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C8              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C9              DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
C10             DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
                **************************************************

C1              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C2              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C3              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C4              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C5              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C6              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C7              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C8              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C9              LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
C10             LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
                **************************************************

C1              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C2              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C3              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C4              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C5              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C6              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C7              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C8              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C9              HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
C10             HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
                **************************************************

C1              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C2              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C3              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C4              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C5              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C6              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C7              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C8              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C9              GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
C10             GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
                **************************************************

C1              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C2              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C3              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C4              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C5              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C6              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C7              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C8              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C9              ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
C10             ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
                **************************************************

C1              PDCAKQKLM
C2              PDCAKQKLM
C3              PDCAKQKLM
C4              PDCAKQKLM
C5              PDCAKQKLM
C6              PDCAKQKLM
C7              PDCAKQKLM
C8              PDCAKQKLM
C9              PDCAKQKLM
C10             PDCAKQKLM
                *********




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  559 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  559 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/295/Lmpt-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clus