--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Mon Nov 21 14:01:31 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/295/Lmpt-PD/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4085.78 -4104.75
2 -4083.72 -4104.21
--------------------------------------
TOTAL -4084.29 -4104.51
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/295/Lmpt-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.448789 0.001731 0.370907 0.533737 0.447020 1487.59 1494.29 1.000
r(A<->C){all} 0.111599 0.000378 0.075354 0.150087 0.110073 1041.92 1088.90 1.000
r(A<->G){all} 0.186995 0.000825 0.133595 0.243679 0.185115 911.29 987.12 1.000
r(A<->T){all} 0.039585 0.000328 0.006085 0.073277 0.037778 864.19 993.96 1.000
r(C<->G){all} 0.058191 0.000148 0.036832 0.083405 0.057200 1150.69 1240.10 1.000
r(C<->T){all} 0.523852 0.001580 0.448754 0.604681 0.523878 786.89 825.51 1.000
r(G<->T){all} 0.079778 0.000349 0.046020 0.116855 0.078625 892.77 976.89 1.001
pi(A){all} 0.217296 0.000094 0.200016 0.237671 0.217284 1348.28 1370.55 1.000
pi(C){all} 0.302246 0.000120 0.279816 0.322466 0.302097 1086.32 1256.29 1.000
pi(G){all} 0.287621 0.000119 0.268890 0.310383 0.287552 1126.00 1230.11 1.000
pi(T){all} 0.192837 0.000090 0.173377 0.210915 0.192639 1078.86 1165.71 1.000
alpha{1,2} 0.114476 0.000258 0.084695 0.145506 0.113453 1296.09 1342.36 1.000
alpha{3} 3.790409 1.034821 2.055741 5.829935 3.671790 1383.78 1442.39 1.000
pinvar{all} 0.630142 0.000789 0.575408 0.684509 0.630567 1106.49 1281.04 1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -3754.462937
Model 2: PositiveSelection -3754.462937
Model 0: one-ratio -3775.37644
Model 3: discrete -3753.700804
Model 7: beta -3760.588294
Model 8: beta&w>1 -3753.707805
Model 0 vs 1 41.82700600000044
Model 2 vs 1 0.0
Model 8 vs 7 13.76097800000025
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Lmpt-PD)
Pr(w>1) post mean +- SE for w
108 V 0.959* 1.831
125 M 1.000** 1.906
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Lmpt-PD)
Pr(w>1) post mean +- SE for w
108 V 0.671 1.454 +- 0.881
125 M 0.953* 2.054 +- 1.069
>C1
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C2
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C3
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C4
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGARASTRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C5
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGARASSRINRYFEQLPDEVVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C6
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFERKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDDVVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPQCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C7
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFERKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGLRASSRINRYFEQLPDEAVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPFDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNLLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C8
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGVRASSRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C9
MVKMLDLDRHALCPLWAALASSDVPWTGMDYACLNVLSTYCKVFDKEEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGARASSRINRYFEQLPEEAVPRLGSEGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
ELLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
>C10
MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDKKEIY
DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
FTWVPPGARASSRINRYFEQLPEEAVPRLGSDGACSRERQISYQLPKQDL
SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIV
AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
DCAKQKLM
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=558
C1 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C2 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C3 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C4 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C5 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C6 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFERKEIY
C7 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFERKEIY
C8 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDRKEIY
C9 MVKMLDLDRHALCPLWAALASSDVPWTGMDYACLNVLSTYCKVFDKEEIY
C10 MVKMLDLDRHAECPLWAALASSDVPWTGMDYACLNVLSIYCKVFDKKEIY
*********** ************************** *****:::***
C1 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C2 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C3 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C4 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C5 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C6 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C7 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C8 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C9 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
C10 DLIVRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDLG
**************************************************
C1 FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
C2 FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
C3 FTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQDL
C4 FTWVPPGARASTRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQDL
C5 FTWVPPGARASSRINRYFEQLPDEVVPRLGSEGACSRERQISYQLPKQDL
C6 FTWVPPGVRASSRINRYFEQLPDDVVPRLGSEGACSRERQISYQLPKQDL
C7 FTWVPPGLRASSRINRYFEQLPDEAVPRLGSEGACSRERQISYQLPKQDL
C8 FTWVPPGVRASSRINRYFEQLPDELVPRLGSEGACSRERQISYQLPKQDL
C9 FTWVPPGARASSRINRYFEQLPEEAVPRLGSEGACSRERQISYQLPKQDL
C10 FTWVPPGARASSRINRYFEQLPEEAVPRLGSDGACSRERQISYQLPKQDL
******* ***:**********:: ******:******************
C1 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C2 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C3 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C4 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C5 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C6 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C7 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPFDEHCAHCDNEIA
C8 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C9 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIA
C10 SLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEIV
*************************************:***********.
C1 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C2 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C3 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C4 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C5 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C6 AGELVVAAPKFVESVMWHPQCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C7 AGELVVAAPKFVESVMWHPKCFTCSTCNLLLVDLTYCVHDDKVYCERHYA
C8 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C9 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
C10 AGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHYA
*******************:******** *********************
C1 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C2 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C3 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C4 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C5 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C6 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C7 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C8 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C9 ELLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
C10 EMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIRD
*:************************************************
C1 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C2 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C3 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C4 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C5 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C6 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C7 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C8 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C9 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
C10 DHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCHL
**************************************************
C1 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C2 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C3 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C4 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C5 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C6 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C7 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C8 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C9 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
C10 SLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQWH
**************************************************
C1 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C2 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C3 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C4 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C5 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C6 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C7 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C8 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C9 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
C10 ENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGG
**************************************************
C1 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C2 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C3 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C4 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C5 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C6 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C7 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C8 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C9 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
C10 VTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTA
**************************************************
C1 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C2 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C3 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C4 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C5 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C6 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C7 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C8 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C9 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
C10 CVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCP
**************************************************
C1 DCAKQKLM
C2 DCAKQKLM
C3 DCAKQKLM
C4 DCAKQKLM
C5 DCAKQKLM
C6 DCAKQKLM
C7 DCAKQKLM
C8 DCAKQKLM
C9 DCAKQKLM
C10 DCAKQKLM
********
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
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-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
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-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
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-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
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-lalign_n_top D [0] 10
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-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
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-proxy S [0] unset
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-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 558 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 558 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/295/Lmpt-PD/batch/allfiles/tcoffee/input.fasta. 