--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 18 11:25:41 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/27/Bsg-PI/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -2170.37         -2182.12
2      -2170.31         -2182.62
--------------------------------------
TOTAL    -2170.34         -2182.40
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.296725    0.000675    0.245401    0.344745    0.295780   1344.42   1422.71    1.000
r(A<->C){all}   0.120200    0.000650    0.070784    0.168646    0.119392    909.09    987.91    1.000
r(A<->G){all}   0.239513    0.001193    0.175024    0.307715    0.238396    923.33    927.48    1.000
r(A<->T){all}   0.135747    0.000721    0.084164    0.188177    0.134125   1025.45   1038.76    1.001
r(C<->G){all}   0.117920    0.000676    0.071020    0.172710    0.115986   1160.32   1180.84    1.000
r(C<->T){all}   0.309875    0.001541    0.234620    0.387386    0.309105    923.16    940.72    1.000
r(G<->T){all}   0.076746    0.000445    0.039363    0.120003    0.075351   1191.63   1224.99    1.001
pi(A){all}      0.278964    0.000226    0.250224    0.308742    0.278930   1311.63   1345.58    1.000
pi(C){all}      0.232562    0.000190    0.206309    0.259725    0.232253   1174.23   1238.77    1.000
pi(G){all}      0.248120    0.000211    0.218584    0.274629    0.247951   1136.20   1147.11    1.000
pi(T){all}      0.240354    0.000204    0.213288    0.268990    0.240204   1352.34   1353.81    1.000
alpha{1,2}      0.622238    0.104769    0.166565    1.267592    0.544318   1483.16   1488.64    1.000
alpha{3}        1.225757    0.381416    0.367951    2.461108    1.109182   1501.00   1501.00    1.000
pinvar{all}     0.142587    0.010385    0.000038    0.337315    0.125752   1273.30   1327.26    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-2058.257957
Model 2: PositiveSelection	-2049.661589
Model 0: one-ratio	-2091.170808
Model 3: discrete	-2049.661589
Model 7: beta	-2058.259997
Model 8: beta&w>1	-2049.661589


Model 0 vs 1	65.82570200000009

Model 2 vs 1	17.192735999999968

Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PI)

            Pr(w>1)     post mean +- SE for w

     6 L      1.000**       2.171
     7 A      1.000**       2.171
     8 S      1.000**       2.171
     9 A      1.000**       2.171
    10 L      1.000**       2.171
    11 S      1.000**       2.171
    12 F      1.000**       2.171
    13 L      1.000**       2.171
    20 Y      1.000**       2.171
    34 A      1.000**       2.171
    35 E      1.000**       2.171
    44 R      1.000**       2.171
    45 S      1.000**       2.171
    55 G      1.000**       2.171
    57 P      1.000**       2.171
    58 G      1.000**       2.171
    59 V      1.000**       2.171
    63 K      1.000**       2.171
    66 G      1.000**       2.171
    68 A      1.000**       2.171
    71 D      1.000**       2.171
    73 P      1.000**       2.171
    76 R      1.000**       2.171
    81 L      1.000**       2.171
    83 A      1.000**       2.171
    84 D      1.000**       2.171
    95 T      1.000**       2.171
    96 N      1.000**       2.171
   100 K      1.000**       2.171
   104 E      1.000**       2.171
   105 F      1.000**       2.171
   106 D      1.000**       2.171
   107 G      1.000**       2.171
   108 V      1.000**       2.171
   109 S      1.000**       2.171
   110 K      1.000**       2.171
   111 E      1.000**       2.171
   113 E      1.000**       2.171
   119 V      1.000**       2.171
   139 S      1.000**       2.171
   144 K      1.000**       2.171
   146 E      1.000**       2.171
   148 T      1.000**       2.171
   152 A      1.000**       2.171
   159 A      1.000**       2.171
   163 F      1.000**       2.171
   164 I      1.000**       2.171
   165 L      1.000**       2.171
   167 P      1.000**       2.171
   168 N      1.000**       2.171
   169 G      1.000**       2.171
   178 D      1.000**       2.171
   183 D      1.000**       2.171
   187 E      1.000**       2.171
   191 I      1.000**       2.171
   193 R      1.000**       2.171
   197 N      1.000**       2.171
   198 V      1.000**       2.171
   199 Y      1.000**       2.171
   200 G      1.000**       2.171
   201 G      1.000**       2.171
   203 T      1.000**       2.171
   205 T      1.000**       2.171
   206 P      1.000**       2.171
   208 S      1.000**       2.171
   210 V      1.000**       2.171
   213 V      1.000**       2.171
   217 G      1.000**       2.171

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PI)

            Pr(w>1)     post mean +- SE for w

     6 L      0.593         1.868 +- 1.097
     7 A      0.805         2.401 +- 0.837
     8 S      0.927         2.669 +- 0.696
     9 A      0.799         2.388 +- 0.840
    10 L      0.566         1.802 +- 1.105
    11 S      0.920         2.657 +- 0.721
    13 L      0.806         2.403 +- 0.835
    20 Y      0.575         1.824 +- 1.103
    34 A      0.766         2.315 +- 0.865
    35 E      0.748         2.275 +- 0.874
    44 R      0.551         1.764 +- 1.108
    45 S      0.971*        2.763 +- 0.627
    55 G      0.801         2.393 +- 0.843
    57 P      0.612         1.915 +- 1.091
    66 G      0.761         2.304 +- 0.863
    68 A      0.804         2.398 +- 0.837
    71 D      0.770         2.325 +- 0.862
    73 P      0.600         1.885 +- 1.095
    76 R      0.828         2.454 +- 0.822
    81 L      0.722         2.186 +- 1.018
    83 A      0.944         2.707 +- 0.674
    95 T      0.844         2.490 +- 0.807
    96 N      0.943         2.703 +- 0.672
   100 K      0.981*        2.783 +- 0.603
   104 E      0.779         2.344 +- 0.855
   105 F      0.786         2.360 +- 0.852
   106 D      0.867         2.534 +- 0.764
   107 G      0.591         1.864 +- 1.098
   108 V      0.749         2.278 +- 0.872
   109 S      0.548         1.758 +- 1.109
   110 K      0.644         1.999 +- 1.048
   111 E      0.933         2.683 +- 0.689
   113 E      0.806         2.402 +- 0.836
   144 K      0.972*        2.765 +- 0.622
   146 E      0.524         1.699 +- 1.113
   148 T      0.856         2.514 +- 0.795
   159 A      0.926         2.666 +- 0.700
   163 F      0.793         2.374 +- 0.844
   165 L      0.515         1.676 +- 1.114
   167 P      0.654         2.017 +- 1.072
   169 G      0.808         2.409 +- 0.834
   183 D      0.895         2.597 +- 0.738
   193 R      0.802         2.380 +- 0.925
   198 V      0.887         2.580 +- 0.747
   199 Y      0.808         2.407 +- 0.834
   200 G      0.527         1.706 +- 1.112
   201 G      0.922         2.658 +- 0.705
   203 T      0.893         2.593 +- 0.737
   205 T      0.809         2.410 +- 0.834
   206 P      0.598         1.879 +- 1.096
   208 S      0.764         2.310 +- 0.861
   210 V      0.970*        2.761 +- 0.626
   213 V      0.510         1.662 +- 1.122


Model 8 vs 7	17.19681600000058

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PI)

            Pr(w>1)     post mean +- SE for w

     6 L      1.000**       2.171
     7 A      1.000**       2.171
     8 S      1.000**       2.171
     9 A      1.000**       2.171
    10 L      1.000**       2.171
    11 S      1.000**       2.171
    12 F      1.000**       2.171
    13 L      1.000**       2.171
    20 Y      1.000**       2.171
    34 A      1.000**       2.171
    35 E      1.000**       2.171
    44 R      1.000**       2.171
    45 S      1.000**       2.171
    55 G      1.000**       2.171
    57 P      1.000**       2.171
    58 G      1.000**       2.171
    59 V      1.000**       2.171
    63 K      1.000**       2.171
    66 G      1.000**       2.171
    68 A      1.000**       2.171
    71 D      1.000**       2.171
    73 P      1.000**       2.171
    76 R      1.000**       2.171
    81 L      1.000**       2.171
    83 A      1.000**       2.171
    84 D      1.000**       2.171
    95 T      1.000**       2.171
    96 N      1.000**       2.171
   100 K      1.000**       2.171
   104 E      1.000**       2.171
   105 F      1.000**       2.171
   106 D      1.000**       2.171
   107 G      1.000**       2.171
   108 V      1.000**       2.171
   109 S      1.000**       2.171
   110 K      1.000**       2.171
   111 E      1.000**       2.171
   113 E      1.000**       2.171
   119 V      1.000**       2.171
   139 S      1.000**       2.171
   144 K      1.000**       2.171
   146 E      1.000**       2.171
   148 T      1.000**       2.171
   152 A      1.000**       2.171
   159 A      1.000**       2.171
   163 F      1.000**       2.171
   164 I      1.000**       2.171
   165 L      1.000**       2.171
   167 P      1.000**       2.171
   168 N      1.000**       2.171
   169 G      1.000**       2.171
   178 D      1.000**       2.171
   183 D      1.000**       2.171
   187 E      1.000**       2.171
   191 I      1.000**       2.171
   193 R      1.000**       2.171
   197 N      1.000**       2.171
   198 V      1.000**       2.171
   199 Y      1.000**       2.171
   200 G      1.000**       2.171
   201 G      1.000**       2.171
   203 T      1.000**       2.171
   205 T      1.000**       2.171
   206 P      1.000**       2.171
   208 S      1.000**       2.171
   210 V      1.000**       2.171
   213 V      1.000**       2.171
   217 G      1.000**       2.171

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PI)

            Pr(w>1)     post mean +- SE for w

     6 L      0.667         1.858 +- 1.109
     7 A      0.906         2.447 +- 0.691
     8 S      0.980*        2.615 +- 0.469
     9 A      0.903         2.439 +- 0.698
    10 L      0.638         1.789 +- 1.128
    11 S      0.969*        2.592 +- 0.516
    12 F      0.524         1.510 +- 1.165
    13 L      0.908         2.450 +- 0.687
    20 Y      0.648         1.812 +- 1.122
    34 A      0.878         2.381 +- 0.751
    35 E      0.865         2.350 +- 0.775
    44 R      0.622         1.749 +- 1.136
    45 S      0.993**       2.643 +- 0.419
    55 G      0.902         2.437 +- 0.702
    57 P      0.686         1.906 +- 1.094
    58 G      0.509         1.473 +- 1.166
    59 V      0.564         1.607 +- 1.160
    63 K      0.534         1.534 +- 1.164
    66 G      0.877         2.379 +- 0.750
    68 A      0.906         2.446 +- 0.692
    71 D      0.881         2.389 +- 0.745
    73 P      0.674         1.876 +- 1.104
    76 R      0.920         2.479 +- 0.661
    81 L      0.797         2.178 +- 0.965
    83 A      0.985*        2.626 +- 0.451
    95 T      0.930         2.502 +- 0.635
    96 N      0.985*        2.627 +- 0.448
   100 K      0.996**       2.650 +- 0.404
   104 E      0.889         2.406 +- 0.729
   105 F      0.893         2.415 +- 0.722
   106 D      0.957*        2.563 +- 0.541
   107 G      0.665         1.854 +- 1.110
   108 V      0.866         2.354 +- 0.772
   109 S      0.619         1.742 +- 1.138
   110 K      0.730         2.014 +- 1.040
   111 E      0.981*        2.619 +- 0.463
   113 E      0.907         2.449 +- 0.688
   119 V      0.547         1.566 +- 1.163
   144 K      0.994**       2.646 +- 0.412
   146 E      0.593         1.678 +- 1.149
   148 T      0.937         2.518 +- 0.615
   152 A      0.555         1.584 +- 1.162
   159 A      0.979*        2.613 +- 0.472
   163 F      0.899         2.430 +- 0.706
   165 L      0.583         1.653 +- 1.153
   167 P      0.728         2.009 +- 1.056
   169 G      0.909         2.453 +- 0.685
   183 D      0.967*        2.588 +- 0.510
   187 E      0.556         1.587 +- 1.160
   193 R      0.873         2.363 +- 0.819
   198 V      0.964*        2.581 +- 0.520
   199 Y      0.909         2.453 +- 0.685
   200 G      0.596         1.686 +- 1.148
   201 G      0.977*        2.610 +- 0.477
   203 T      0.967*        2.588 +- 0.509
   205 T      0.909         2.454 +- 0.684
   206 P      0.672         1.870 +- 1.105
   208 S      0.879         2.383 +- 0.747
   210 V      0.994**       2.645 +- 0.415
   213 V      0.574         1.632 +- 1.159

>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGNTTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGNTTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPDNGVPNAILTLDNVTLDDRGEYKCTGKNAAN
EYAKNTTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEKRRN
KSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGNNTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVKDTPGVLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDDGL
YSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLSWT
FGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAAND
YGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSSVLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDDG
DYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLIW
TFGNVTLTNSTDRFVLKPENNVPNAILTLDNVTLQDRGEYKCIGRNAAND
YGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=268 

C1              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
C2              MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
C3              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
C4              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
C5              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
C6              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
C7              MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
                *****  . :   ****** *************  ********: *****

C1              CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
C2              CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
C3              CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
C4              CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
C5              CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
C6              CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
C7              CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
                **** .*.. :***:**.* **:*.** ****:*  **********..**

C1              GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
C2              GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
C3              GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
C4              GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
C5              GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
C6              GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
C7              GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
                * ***. .  :: * *****:*******************:**** *:* 

C1              WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
C2              WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
C3              WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
C4              WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
C5              WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
C6              WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
C7              WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
                ***.****** *** ::*.  :.********:****:***:*** *:***

C1              NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C2              NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C3              NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C4              NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
C5              DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C6              NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C7              NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
                : .. *  .*: * * **:***.***************************

C1              RRNKSELEESDTDPQEQ-
C2              RRNKSELEESDTDPQEQ-
C3              RRNKSELEESDTDPQEQ-
C4              RRNKSELEESDTDPQEQo
C5              RRNKSELEESDTDPQEQ-
C6              RRNKSELEESDTDPQEQ-
C7              RRNKSELEESDTDPQEQ-
                ***************** 




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [11760]--->[11602]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/27/Bsg-PI/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.400 Mb, Max= 30.799 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-

FORMAT of file /tmp/tmp5396945050589792575aln Not Supported[FATAL:T-COFFEE]
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:268 S:99 BS:268
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES 
BOT	    0    1	 93.21 C1	 C2	 93.21
TOP	    1    0	 93.21 C2	 C1	 93.21
BOT	    0    2	 97.36 C1	 C3	 97.36
TOP	    2    0	 97.36 C3	 C1	 97.36
BOT	    0    3	 88.64 C1	 C4	 88.64
TOP	    3    0	 88.64 C4	 C1	 88.64
BOT	    0    4	 96.60 C1	 C5	 96.60
TOP	    4    0	 96.60 C5	 C1	 96.60
BOT	    0    5	 85.93 C1	 C6	 85.93
TOP	    5    0	 85.93 C6	 C1	 85.93
BOT	    0    6	 86.69 C1	 C7	 86.69
TOP	    6    0	 86.69 C7	 C1	 86.69
BOT	    1    2	 94.72 C2	 C3	 94.72
TOP	    2    1	 94.72 C3	 C2	 94.72
BOT	    1    3	 84.47 C2	 C4	 84.47
TOP	    3    1	 84.47 C4	 C2	 84.47
BOT	    1    4	 91.70 C2	 C5	 91.70
TOP	    4    1	 91.70 C5	 C2	 91.70
BOT	    1    5	 81.75 C2	 C6	 81.75
TOP	    5    1	 81.75 C6	 C2	 81.75
BOT	    1    6	 84.03 C2	 C7	 84.03
TOP	    6    1	 84.03 C7	 C2	 84.03
BOT	    2    3	 87.50 C3	 C4	 87.50
TOP	    3    2	 87.50 C4	 C3	 87.50
BOT	    2    4	 94.72 C3	 C5	 94.72
TOP	    4    2	 94.72 C5	 C3	 94.72
BOT	    2    5	 85.55 C3	 C6	 85.55
TOP	    5    2	 85.55 C6	 C3	 85.55
BOT	    2    6	 87.07 C3	 C7	 87.07
TOP	    6    2	 87.07 C7	 C3	 87.07
BOT	    3    4	 88.64 C4	 C5	 88.64
TOP	    4    3	 88.64 C5	 C4	 88.64
BOT	    3    5	 82.82 C4	 C6	 82.82
TOP	    5    3	 82.82 C6	 C4	 82.82
BOT	    3    6	 82.44 C4	 C7	 82.44
TOP	    6    3	 82.44 C7	 C4	 82.44
BOT	    4    5	 85.55 C5	 C6	 85.55
TOP	    5    4	 85.55 C6	 C5	 85.55
BOT	    4    6	 87.07 C5	 C7	 87.07
TOP	    6    4	 87.07 C7	 C5	 87.07
BOT	    5    6	 87.88 C6	 C7	 87.88
TOP	    6    5	 87.88 C7	 C6	 87.88
AVG	 0	 C1	  *	 91.40
AVG	 1	 C2	  *	 88.31
AVG	 2	 C3	  *	 91.15
AVG	 3	 C4	  *	 85.75
AVG	 4	 C5	  *	 90.71
AVG	 5	 C6	  *	 84.91
AVG	 6	 C7	  *	 85.86
TOT	 TOT	  *	 88.30
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C2              ATGGAGGCAAAATTCTGGCTAGCGCTCTTTCATTCCTCCTCGATATTTTT
C3              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C4              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C5              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C6              ATGGAGGCGAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C7              ATGGAGGCAAAATTCTTGGCTGGCGCTCTTTCATTCCTCTCGATATTTTT
                ********.******* *  :.      ** .:* *  ************

C1              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C2              AGCAATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
C3              AGCGATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
C4              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C5              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C6              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
C7              AGCGATTAATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
                ***.***:******************** ********************.

C1              CCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C2              CCATGCATCAAATGAAATTTTACGACATCAGATCGCCACTCGTTCTCAGC
C3              CCAAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C4              TCGAACATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C5              TCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C6              TCGAGCATCAAATGAAATTTTACGACATCAGACACCCGCTGGTTCTCAGC
C7              TCGAGCATCAAATGAAATTTTACGACATCAAAACGCCGCTGGTTCTCAGC
                 *.:.*************************.* . **.** *********

C1              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C2              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C3              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C4              TGCAACGTGAAAGACAGTACGCCGGGCGGCCTGCTCATATGGAGAAAGAA
C5              TGCAACGTGAAAGACGGTACGCCAGGCGGCGTGCTCATATGGAAAAAGAA
C6              TGCAACGTGAAA---GACACGCCGGGC---GTGCTTATATGGAAAAAGAA
C7              TGCAACGTGAAAGAAGATACGTCGAGC---GTTCTTATATGGAAAAAGAA
                ************   .. *** *..**    * ** *******.******

C1              CGGCACCGCTGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAA
C2              CGGCACCGCTGTGACGGAGGTACCTTCTCTAATAGGTCGCTTTAAGTTAA
C3              CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
C4              CGGCACCGTTGTGACGGAAGTAGCTTCTCTAAGAGGTCGCTTTAAGTTAA
C5              CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
C6              CAACACCGATGTGACGCAGGTGCCTTCGCTGAAAGGTCGCTTTAAGCTAA
C7              CGGCACCGCTGTGACGGAGGTGCCTTCGCTAAAGGGTCGCTTTAAGATAA
                *..***** ******* * **. **** ** * .************ ***

C1              TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C2              TCCCAGACGAGAATAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C3              TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C4              TCCCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGACCGACGAT
C5              TCGCAGACGAGAACAAGTTTATCATCGATAAGACGGATACGAACGACGAT
C6              TCGAAGCCGAGAACAAGTTCATCATCGACAAGACGGACGCATCCGACGAT
C7              TCGCAGCCGAGAATAAGTTCATCATCGACAAGACGGATGTAAGCGATGAT
                ** .**.****** ***** ******** ******** . .: *** ***

C1              GGCAAATACAGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAAT
C2              GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
C3              GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
C4              GGCGAATACAGTTGCGAGTACAGTGGAGAGACCAAGAAAATCGAAGTAAT
C5              GGCAAATACAGTTGCGAGTTCGACGGAGTGTCCAAGGAAATCGAAGTGAT
C6              GGTCTTTACAGTTGCTCGATCAACGAAGAGTCCCGGAATATCACAGTGAT
C7              GGCGATTACAGTTGCGAGATCGACGGAGAGTCCAAGATAATCAAAGTGAT
                **  ::********* .*:: .. *..*:*:**..*.::***..***.**

C1              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C2              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C3              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C4              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C5              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C6              TGCCCGCGTTATTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C7              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGAG
                **********.*****.*******************************:*

C1              AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACA
C2              AAAAGATGTCGGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACA
C3              AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACA
C4              AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACA
C5              AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACA
C6              AGAAGATGTCGGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCA
C7              AGAAGATGTCGGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATA
                *.************** ****  ***** **:***..:**  *****: *

C1              TGGACCTTTGCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCT
C2              TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
C3              TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
C4              TGGACCTTTGGCAATGTAACGCTGACAAACGACACAGATCGCGTCATCGT
C5              TGGACCTTTGCCAATGTAACGCTGACAAACGGCACAGATCGCTTCATCCT
C6              TGGACCTTTGGCAATGTAACGCTGACAAACTCCACAGATCGTTACATCCT
C7              TGGACTTTTGGCAATGTAACGCTGACAAACTCAACGGATCGCTTCGTCCT
                ***** **** ******************   .**.*****  :*.*  *

C1              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATG
C2              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
C3              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
C4              CAAACCAGAT---AATGGTGTTCCTAACGCCATTCTGACACTGGACAATG
C5              CAAACCAGACGATAATGGTGTTCCCAACGCCATTCTGACACTGGATAATG
C6              CAAGGCGGACGAGGACAATGTCCCCAACGCCATTCTGACATTGGACAATG
C7              CAAACCA---GAAAACAATGTCCCCAACGCCATTCTGACACTGGACAATG
                ***. *.      .* ..*** ** *************** **** ****

C1              TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C2              TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C3              TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C4              TGACATTGGACGACAGAGGCGAATACAAATGCACTGGAAAAAATGCGGCC
C5              TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C6              TGACATTGGACGACAGAGGCGACTACAAATGCATTGGACGCAATGCGGCC
C7              TGACATTGCAAGACAGAGGCGAGTACAAATGCATTGGACGCAATGCGGCC
                ******** *.*********** ********** ****...*********

C1              AATGTCTACGGTGGGAAC------ACCACCACTCCTGCCAGCGACGTCAC
C2              AATGTCCACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACTTCAC
C3              AATGTCTACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACGTCAC
C4              AATGAATACGCTAAGAAC------ACCACTACTCTTGCCACCGACGCCAC
C5              GATGCCTTCGGTGGGAAC------AACACCACTCCTGCCAGCGACTTCAC
C6              AATGACTACGGTGTGAATGGCACCAACACCGCCCCTGCCATCGACGTCAC
C7              AATGACTATGGTGTGAACGGCACCAGCACTGCTCCTGCCAGCGACTTCAC
                .*** . : * *. ***       * *** .* * ***** ****  ***

C1              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C2              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C3              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C4              AACTCTTCGTGTTAAGAGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C5              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C6              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C7              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
                **** * *********.*********************************

C1              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C2              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C3              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C4              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C5              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C6              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTACGAGAAG
C7              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTATGAGAAG
                **************************************** ** ******

C1              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C2              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C3              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C4              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C5              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C6              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C7              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCTCAAGAACA
                ***************************************** ********

C1              G---
C2              G---
C3              G---
C4              G---
C5              G---
C6              G---
C7              G---
                *   



>C1
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
CCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATG
TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCTACGGTGGGAAC------ACCACCACTCCTGCCAGCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C2
ATGGAGGCAAAATTCTGGCTAGCGCTCTTTCATTCCTCCTCGATATTTTT
AGCAATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
CCATGCATCAAATGAAATTTTACGACATCAGATCGCCACTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAATAGGTCGCTTTAAGTTAA
TCCCAGACGAGAATAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCCACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C3
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
CCAAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCTACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C4
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
TCGAACATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACAGTACGCCGGGCGGCCTGCTCATATGGAGAAAGAA
CGGCACCGTTGTGACGGAAGTAGCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCCCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGACCGACGAT
GGCGAATACAGTTGCGAGTACAGTGGAGAGACCAAGAAAATCGAAGTAAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACA
TGGACCTTTGGCAATGTAACGCTGACAAACGACACAGATCGCGTCATCGT
CAAACCAGAT---AATGGTGTTCCTAACGCCATTCTGACACTGGACAATG
TGACATTGGACGACAGAGGCGAATACAAATGCACTGGAAAAAATGCGGCC
AATGAATACGCTAAGAAC------ACCACTACTCTTGCCACCGACGCCAC
AACTCTTCGTGTTAAGAGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C5
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
TCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCAGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTTATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGTGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGGCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCCAACGCCATTCTGACACTGGATAATG
TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
GATGCCTTCGGTGGGAAC------AACACCACTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C6
ATGGAGGCGAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
TCGAGCATCAAATGAAATTTTACGACATCAGACACCCGCTGGTTCTCAGC
TGCAACGTGAAA---GACACGCCGGGC---GTGCTTATATGGAAAAAGAA
CAACACCGATGTGACGCAGGTGCCTTCGCTGAAAGGTCGCTTTAAGCTAA
TCGAAGCCGAGAACAAGTTCATCATCGACAAGACGGACGCATCCGACGAT
GGTCTTTACAGTTGCTCGATCAACGAAGAGTCCCGGAATATCACAGTGAT
TGCCCGCGTTATTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCA
TGGACCTTTGGCAATGTAACGCTGACAAACTCCACAGATCGTTACATCCT
CAAGGCGGACGAGGACAATGTCCCCAACGCCATTCTGACATTGGACAATG
TGACATTGGACGACAGAGGCGACTACAAATGCATTGGACGCAATGCGGCC
AATGACTACGGTGTGAATGGCACCAACACCGCCCCTGCCATCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTACGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C7
ATGGAGGCAAAATTCTTGGCTGGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTAATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
TCGAGCATCAAATGAAATTTTACGACATCAAAACGCCGCTGGTTCTCAGC
TGCAACGTGAAAGAAGATACGTCGAGC---GTTCTTATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTGCCTTCGCTAAAGGGTCGCTTTAAGATAA
TCGCAGCCGAGAATAAGTTCATCATCGACAAGACGGATGTAAGCGATGAT
GGCGATTACAGTTGCGAGATCGACGGAGAGTCCAAGATAATCAAAGTGAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGAG
AGAAGATGTCGGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATA
TGGACTTTTGGCAATGTAACGCTGACAAACTCAACGGATCGCTTCGTCCT
CAAACCA---GAAAACAATGTCCCCAACGCCATTCTGACACTGGACAATG
TGACATTGCAAGACAGAGGCGAGTACAAATGCATTGGACGCAATGCGGCC
AATGACTATGGTGTGAACGGCACCAGCACTGCTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCTCAAGAACA
G---
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNooTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGNooTTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGNooTTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPDoNGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKNooTTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGNooNTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVKoDTPGoVLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSSoVLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKPoENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 7 taxa and 804 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Taxon 6 -> C6
      Taxon 7 -> C7
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1479467836
      Setting output file names to "/opt/ADOPS/27/Bsg-PI/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 809390388
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 8781855650
      Seed = 383033687
      Swapseed = 1479467836
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 50 unique site patterns
      Division 2 has 48 unique site patterns
      Division 3 has 56 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -2681.062997 -- -24.557203
         Chain 2 -- -2709.228202 -- -24.557203
         Chain 3 -- -2610.687687 -- -24.557203
         Chain 4 -- -2709.459878 -- -24.557203

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -2710.098709 -- -24.557203
         Chain 2 -- -2715.676906 -- -24.557203
         Chain 3 -- -2733.034151 -- -24.557203
         Chain 4 -- -2731.775893 -- -24.557203


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-2681.063] (-2709.228) (-2610.688) (-2709.460) * [-2710.099] (-2715.677) (-2733.034) (-2731.776) 
        500 -- [-2185.020] (-2195.796) (-2188.380) (-2184.074) * (-2186.458) [-2186.864] (-2191.697) (-2192.223) -- 0:33:19
       1000 -- (-2183.177) [-2184.393] (-2179.839) (-2178.155) * (-2182.841) (-2179.663) (-2180.695) [-2182.177] -- 0:16:39
       1500 -- (-2180.272) (-2188.923) (-2180.140) [-2176.564] * (-2173.379) (-2172.495) [-2178.194] (-2177.997) -- 0:11:05
       2000 -- (-2171.859) (-2177.863) (-2175.391) [-2173.641] * [-2175.540] (-2176.542) (-2180.952) (-2171.260) -- 0:08:19
       2500 -- (-2168.277) (-2184.380) [-2177.019] (-2184.096) * (-2175.401) (-2181.509) (-2180.808) [-2169.065] -- 0:06:39
       3000 -- (-2180.349) (-2178.353) [-2172.164] (-2175.093) * (-2175.613) [-2175.464] (-2180.246) (-2173.367) -- 0:11:04
       3500 -- (-2170.670) (-2173.804) (-2170.322) [-2177.355] * [-2172.007] (-2174.850) (-2182.844) (-2177.180) -- 0:09:29
       4000 -- (-2174.331) [-2172.354] (-2181.800) (-2177.955) * (-2179.118) [-2169.245] (-2189.391) (-2181.392) -- 0:08:18
       4500 -- (-2179.990) (-2173.120) (-2182.165) [-2169.493] * (-2175.963) (-2175.968) (-2176.749) [-2180.116] -- 0:07:22
       5000 -- (-2176.624) [-2173.546] (-2180.569) (-2168.952) * [-2171.940] (-2167.702) (-2170.652) (-2180.414) -- 0:06:38

      Average standard deviation of split frequencies: 0.078567

       5500 -- (-2174.385) [-2174.404] (-2175.162) (-2175.071) * (-2186.122) (-2175.985) (-2177.439) [-2172.932] -- 0:06:01
       6000 -- (-2178.225) (-2172.807) (-2175.335) [-2172.670] * [-2172.209] (-2173.259) (-2178.542) (-2181.600) -- 0:05:31
       6500 -- (-2171.426) (-2171.186) (-2178.714) [-2174.650] * (-2175.244) [-2172.245] (-2176.392) (-2180.390) -- 0:07:38
       7000 -- (-2179.151) (-2173.688) [-2176.717] (-2171.879) * (-2173.550) [-2172.513] (-2175.135) (-2175.148) -- 0:07:05
       7500 -- [-2172.296] (-2173.432) (-2175.808) (-2177.230) * (-2173.460) (-2188.062) [-2174.909] (-2172.220) -- 0:06:37
       8000 -- (-2171.286) [-2171.971] (-2177.361) (-2177.187) * (-2175.131) [-2170.262] (-2185.060) (-2171.390) -- 0:06:12
       8500 -- (-2172.667) [-2170.944] (-2180.023) (-2169.236) * [-2170.523] (-2174.085) (-2175.889) (-2176.618) -- 0:05:49
       9000 -- (-2169.874) (-2171.090) [-2170.042] (-2172.543) * (-2173.860) (-2174.441) (-2174.248) [-2174.192] -- 0:05:30
       9500 -- [-2175.638] (-2172.800) (-2173.899) (-2176.520) * (-2178.742) [-2167.498] (-2181.334) (-2178.689) -- 0:06:57
      10000 -- (-2176.752) (-2171.280) [-2171.519] (-2183.698) * (-2170.759) [-2169.077] (-2175.515) (-2176.547) -- 0:06:36

      Average standard deviation of split frequencies: 0.044194

      10500 -- [-2172.587] (-2174.009) (-2175.063) (-2174.508) * [-2170.004] (-2174.777) (-2178.480) (-2171.120) -- 0:06:16
      11000 -- (-2171.420) [-2170.667] (-2173.048) (-2169.700) * [-2175.612] (-2173.761) (-2172.952) (-2171.186) -- 0:05:59
      11500 -- [-2176.367] (-2172.289) (-2173.694) (-2171.735) * (-2179.716) (-2174.473) (-2171.125) [-2172.401] -- 0:05:43
      12000 -- (-2174.981) (-2171.675) (-2173.796) [-2172.905] * (-2173.759) (-2168.520) [-2170.457] (-2178.166) -- 0:05:29
      12500 -- (-2171.275) (-2169.988) (-2171.335) [-2172.548] * (-2174.447) [-2170.422] (-2171.654) (-2174.570) -- 0:06:35
      13000 -- (-2175.696) (-2171.590) (-2175.648) [-2170.672] * (-2169.910) [-2171.234] (-2171.740) (-2175.176) -- 0:06:19
      13500 -- (-2176.677) [-2171.870] (-2175.658) (-2176.709) * (-2182.920) (-2172.348) (-2173.237) [-2172.391] -- 0:06:05
      14000 -- (-2175.968) (-2178.165) [-2171.660] (-2177.739) * (-2171.250) (-2175.774) (-2167.773) [-2169.637] -- 0:05:52
      14500 -- (-2177.130) (-2172.587) (-2173.850) [-2170.025] * (-2171.219) [-2173.188] (-2172.307) (-2168.060) -- 0:05:39
      15000 -- [-2180.887] (-2174.418) (-2176.675) (-2178.464) * (-2177.859) (-2172.695) (-2173.358) [-2169.739] -- 0:05:28

      Average standard deviation of split frequencies: 0.017678

      15500 -- (-2170.655) [-2169.610] (-2174.956) (-2173.876) * (-2171.134) (-2172.944) [-2176.883] (-2175.079) -- 0:05:17
      16000 -- (-2176.444) (-2173.515) (-2172.074) [-2182.797] * (-2171.935) (-2173.040) [-2175.250] (-2174.220) -- 0:06:09
      16500 -- [-2168.562] (-2174.388) (-2173.604) (-2181.512) * (-2174.289) (-2177.439) (-2174.760) [-2171.779] -- 0:05:57
      17000 -- (-2176.319) (-2172.583) (-2174.181) [-2182.748] * [-2170.662] (-2175.100) (-2177.642) (-2172.679) -- 0:05:46
      17500 -- (-2174.981) [-2173.266] (-2174.981) (-2177.418) * (-2178.771) [-2171.989] (-2172.423) (-2171.586) -- 0:05:36
      18000 -- (-2171.322) (-2178.001) [-2172.937] (-2175.492) * (-2179.048) (-2171.790) [-2175.426] (-2173.717) -- 0:05:27
      18500 -- (-2174.085) [-2170.905] (-2178.856) (-2175.878) * (-2174.050) [-2168.814] (-2176.184) (-2175.166) -- 0:05:18
      19000 -- (-2173.649) (-2173.045) [-2178.954] (-2181.443) * (-2181.472) [-2173.713] (-2168.470) (-2172.188) -- 0:06:01
      19500 -- (-2179.294) (-2175.287) (-2178.863) [-2169.907] * (-2176.313) (-2172.842) [-2169.641] (-2183.288) -- 0:05:51
      20000 -- (-2169.017) (-2168.090) (-2180.243) [-2172.598] * (-2180.070) [-2172.260] (-2175.113) (-2170.990) -- 0:05:43

      Average standard deviation of split frequencies: 0.009124

      20500 -- (-2173.951) [-2174.872] (-2180.835) (-2172.263) * [-2175.849] (-2180.707) (-2169.831) (-2170.735) -- 0:05:34
      21000 -- (-2171.492) (-2174.461) [-2172.082] (-2176.174) * (-2175.641) [-2169.113] (-2177.101) (-2173.922) -- 0:05:26
      21500 -- (-2176.402) [-2169.629] (-2168.797) (-2169.094) * (-2176.095) [-2172.414] (-2176.054) (-2172.753) -- 0:05:18
      22000 -- [-2174.082] (-2168.601) (-2179.129) (-2173.003) * (-2176.452) [-2181.767] (-2175.342) (-2174.990) -- 0:05:55
      22500 -- (-2188.282) (-2174.161) [-2180.594] (-2169.680) * (-2183.293) [-2170.475] (-2174.699) (-2169.044) -- 0:05:47
      23000 -- (-2180.830) [-2176.707] (-2176.032) (-2179.718) * (-2176.291) (-2170.552) (-2181.690) [-2171.758] -- 0:05:39
      23500 -- (-2177.647) (-2171.629) (-2174.782) [-2169.345] * (-2169.106) (-2176.220) (-2178.289) [-2168.918] -- 0:05:32
      24000 -- (-2175.757) (-2171.712) [-2171.270] (-2182.538) * (-2177.535) (-2171.536) [-2171.358] (-2178.173) -- 0:05:25
      24500 -- (-2182.702) [-2171.352] (-2178.451) (-2170.347) * (-2179.519) (-2177.539) [-2169.657] (-2172.152) -- 0:05:18
      25000 -- (-2187.068) (-2173.675) [-2174.417] (-2178.476) * (-2174.216) (-2173.221) [-2173.145] (-2171.004) -- 0:05:12

      Average standard deviation of split frequencies: 0.024175

      25500 -- (-2175.433) (-2169.627) [-2171.564] (-2174.985) * (-2171.593) (-2170.677) [-2169.844] (-2172.519) -- 0:05:43
      26000 -- (-2184.540) [-2175.307] (-2172.578) (-2173.750) * [-2173.848] (-2172.359) (-2168.339) (-2172.853) -- 0:05:37
      26500 -- (-2180.773) (-2172.672) (-2170.006) [-2174.044] * (-2175.624) [-2170.163] (-2175.659) (-2179.526) -- 0:05:30
      27000 -- [-2172.877] (-2178.253) (-2172.717) (-2172.042) * (-2179.416) [-2176.455] (-2180.157) (-2174.528) -- 0:05:24
      27500 -- (-2180.122) [-2171.925] (-2169.601) (-2173.957) * (-2174.937) (-2175.817) (-2179.725) [-2174.340] -- 0:05:18
      28000 -- (-2183.379) (-2172.968) [-2170.701] (-2173.243) * (-2178.675) (-2183.456) (-2175.077) [-2169.310] -- 0:05:12
      28500 -- (-2184.646) (-2174.322) (-2177.467) [-2171.692] * (-2170.328) (-2178.826) [-2174.876] (-2178.352) -- 0:05:40
      29000 -- (-2182.479) [-2176.981] (-2169.416) (-2168.393) * [-2169.540] (-2172.999) (-2182.146) (-2171.673) -- 0:05:34
      29500 -- (-2176.843) [-2174.059] (-2172.286) (-2170.540) * [-2169.303] (-2175.361) (-2179.781) (-2169.188) -- 0:05:28
      30000 -- (-2180.200) [-2172.612] (-2176.290) (-2178.025) * (-2177.105) (-2170.170) (-2180.319) [-2171.218] -- 0:05:23

      Average standard deviation of split frequencies: 0.020496

      30500 -- (-2174.269) (-2174.114) [-2169.476] (-2176.312) * (-2172.589) (-2172.293) [-2177.522] (-2168.738) -- 0:05:17
      31000 -- (-2180.363) [-2167.815] (-2175.428) (-2173.227) * (-2178.906) (-2182.177) (-2171.373) [-2179.178] -- 0:05:12
      31500 -- [-2171.000] (-2183.762) (-2172.640) (-2176.872) * (-2171.889) [-2175.289] (-2177.460) (-2170.720) -- 0:05:38
      32000 -- (-2171.879) [-2174.763] (-2178.128) (-2178.645) * (-2171.252) (-2174.441) (-2173.830) [-2169.450] -- 0:05:32
      32500 -- [-2178.270] (-2171.603) (-2174.153) (-2172.365) * (-2180.973) [-2174.574] (-2171.314) (-2182.517) -- 0:05:27
      33000 -- (-2174.875) (-2177.902) [-2173.579] (-2176.198) * (-2171.185) (-2171.516) [-2180.616] (-2176.892) -- 0:05:22
      33500 -- (-2170.122) (-2177.132) (-2176.841) [-2169.056] * (-2170.641) (-2174.609) [-2174.253] (-2184.128) -- 0:05:17
      34000 -- (-2177.709) (-2177.366) (-2173.836) [-2170.379] * (-2170.541) (-2175.706) [-2168.722] (-2177.310) -- 0:05:12
      34500 -- [-2172.700] (-2174.223) (-2185.467) (-2171.159) * (-2177.565) [-2169.676] (-2172.530) (-2172.528) -- 0:05:07
      35000 -- [-2172.433] (-2176.972) (-2180.569) (-2173.787) * [-2174.069] (-2170.569) (-2173.827) (-2181.506) -- 0:05:30

      Average standard deviation of split frequencies: 0.021824