--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 18 11:17:13 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/27/Bsg-PH/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -2170.24         -2183.51
2      -2170.33         -2182.76
--------------------------------------
TOTAL    -2170.28         -2183.20
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.297134    0.000664    0.246131    0.344963    0.296047   1501.00   1501.00    1.000
r(A<->C){all}   0.120280    0.000678    0.069799    0.169424    0.118734   1123.61   1237.80    1.000
r(A<->G){all}   0.238246    0.001178    0.175442    0.306952    0.236394   1063.47   1072.98    1.000
r(A<->T){all}   0.135752    0.000750    0.080535    0.188275    0.134571    985.48   1048.81    1.000
r(C<->G){all}   0.118711    0.000700    0.070955    0.170881    0.116780   1069.80   1095.18    1.000
r(C<->T){all}   0.310982    0.001596    0.236315    0.390550    0.308904    940.34   1087.23    1.000
r(G<->T){all}   0.076030    0.000442    0.034950    0.115326    0.074267    861.13   1068.32    1.000
pi(A){all}      0.279615    0.000219    0.251428    0.308440    0.279645   1156.13   1208.53    1.000
pi(C){all}      0.232717    0.000184    0.206326    0.259287    0.232425   1462.19   1481.59    1.000
pi(G){all}      0.248135    0.000194    0.221326    0.275670    0.248117   1192.66   1243.97    1.001
pi(T){all}      0.239533    0.000200    0.212595    0.267144    0.239139   1116.14   1194.10    1.000
alpha{1,2}      0.615680    0.101155    0.193902    1.264095    0.541247   1378.74   1381.58    1.000
alpha{3}        1.192556    0.339636    0.327455    2.366348    1.074654   1354.67   1396.36    1.000
pinvar{all}     0.137139    0.009702    0.000087    0.324822    0.119344   1243.89   1279.06    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-2058.257957
Model 2: PositiveSelection	-2049.661589
Model 0: one-ratio	-2091.170808
Model 3: discrete	-2049.661589
Model 7: beta	-2058.259997
Model 8: beta&w>1	-2049.661589


Model 0 vs 1	65.82570200000009

Model 2 vs 1	17.192735999999968

Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PH)

            Pr(w>1)     post mean +- SE for w

     6 L      1.000**       2.171
     7 A      1.000**       2.171
     8 S      1.000**       2.171
     9 A      1.000**       2.171
    10 L      1.000**       2.171
    11 S      1.000**       2.171
    12 F      1.000**       2.171
    13 L      1.000**       2.171
    20 Y      1.000**       2.171
    34 A      1.000**       2.171
    35 E      1.000**       2.171
    44 R      1.000**       2.171
    45 S      1.000**       2.171
    55 G      1.000**       2.171
    57 P      1.000**       2.171
    58 G      1.000**       2.171
    59 V      1.000**       2.171
    63 K      1.000**       2.171
    66 G      1.000**       2.171
    68 A      1.000**       2.171
    71 D      1.000**       2.171
    73 P      1.000**       2.171
    76 R      1.000**       2.171
    81 L      1.000**       2.171
    83 A      1.000**       2.171
    84 D      1.000**       2.171
    95 T      1.000**       2.171
    96 N      1.000**       2.171
   100 K      1.000**       2.171
   104 E      1.000**       2.171
   105 F      1.000**       2.171
   106 D      1.000**       2.171
   107 G      1.000**       2.171
   108 V      1.000**       2.171
   109 S      1.000**       2.171
   110 K      1.000**       2.171
   111 E      1.000**       2.171
   113 E      1.000**       2.171
   119 V      1.000**       2.171
   139 S      1.000**       2.171
   144 K      1.000**       2.171
   146 E      1.000**       2.171
   148 T      1.000**       2.171
   152 A      1.000**       2.171
   159 A      1.000**       2.171
   163 F      1.000**       2.171
   164 I      1.000**       2.171
   165 L      1.000**       2.171
   167 P      1.000**       2.171
   168 N      1.000**       2.171
   169 G      1.000**       2.171
   178 D      1.000**       2.171
   183 D      1.000**       2.171
   187 E      1.000**       2.171
   191 I      1.000**       2.171
   193 R      1.000**       2.171
   197 N      1.000**       2.171
   198 V      1.000**       2.171
   199 Y      1.000**       2.171
   200 G      1.000**       2.171
   201 G      1.000**       2.171
   203 T      1.000**       2.171
   205 T      1.000**       2.171
   206 P      1.000**       2.171
   208 S      1.000**       2.171
   210 V      1.000**       2.171
   213 V      1.000**       2.171
   217 G      1.000**       2.171

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PH)

            Pr(w>1)     post mean +- SE for w

     6 L      0.593         1.868 +- 1.097
     7 A      0.805         2.401 +- 0.837
     8 S      0.927         2.669 +- 0.696
     9 A      0.799         2.388 +- 0.840
    10 L      0.566         1.802 +- 1.105
    11 S      0.920         2.657 +- 0.721
    13 L      0.806         2.403 +- 0.835
    20 Y      0.575         1.824 +- 1.103
    34 A      0.766         2.315 +- 0.865
    35 E      0.748         2.275 +- 0.874
    44 R      0.551         1.764 +- 1.108
    45 S      0.971*        2.763 +- 0.627
    55 G      0.801         2.393 +- 0.843
    57 P      0.612         1.915 +- 1.091
    66 G      0.761         2.304 +- 0.863
    68 A      0.804         2.398 +- 0.837
    71 D      0.770         2.325 +- 0.862
    73 P      0.600         1.885 +- 1.095
    76 R      0.828         2.454 +- 0.822
    81 L      0.722         2.186 +- 1.018
    83 A      0.944         2.707 +- 0.674
    95 T      0.844         2.490 +- 0.807
    96 N      0.943         2.703 +- 0.672
   100 K      0.981*        2.783 +- 0.603
   104 E      0.779         2.344 +- 0.855
   105 F      0.786         2.360 +- 0.852
   106 D      0.867         2.534 +- 0.764
   107 G      0.591         1.864 +- 1.098
   108 V      0.749         2.278 +- 0.872
   109 S      0.548         1.758 +- 1.109
   110 K      0.644         1.999 +- 1.048
   111 E      0.933         2.683 +- 0.689
   113 E      0.806         2.402 +- 0.836
   144 K      0.972*        2.765 +- 0.622
   146 E      0.524         1.699 +- 1.113
   148 T      0.856         2.514 +- 0.795
   159 A      0.926         2.666 +- 0.700
   163 F      0.793         2.374 +- 0.844
   165 L      0.515         1.676 +- 1.114
   167 P      0.654         2.017 +- 1.072
   169 G      0.808         2.409 +- 0.834
   183 D      0.895         2.597 +- 0.738
   193 R      0.802         2.380 +- 0.925
   198 V      0.887         2.580 +- 0.747
   199 Y      0.808         2.407 +- 0.834
   200 G      0.527         1.706 +- 1.112
   201 G      0.922         2.658 +- 0.705
   203 T      0.893         2.593 +- 0.737
   205 T      0.809         2.410 +- 0.834
   206 P      0.598         1.879 +- 1.096
   208 S      0.764         2.310 +- 0.861
   210 V      0.970*        2.761 +- 0.626
   213 V      0.510         1.662 +- 1.122


Model 8 vs 7	17.19681600000058

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PH)

            Pr(w>1)     post mean +- SE for w

     6 L      1.000**       2.171
     7 A      1.000**       2.171
     8 S      1.000**       2.171
     9 A      1.000**       2.171
    10 L      1.000**       2.171
    11 S      1.000**       2.171
    12 F      1.000**       2.171
    13 L      1.000**       2.171
    20 Y      1.000**       2.171
    34 A      1.000**       2.171
    35 E      1.000**       2.171
    44 R      1.000**       2.171
    45 S      1.000**       2.171
    55 G      1.000**       2.171
    57 P      1.000**       2.171
    58 G      1.000**       2.171
    59 V      1.000**       2.171
    63 K      1.000**       2.171
    66 G      1.000**       2.171
    68 A      1.000**       2.171
    71 D      1.000**       2.171
    73 P      1.000**       2.171
    76 R      1.000**       2.171
    81 L      1.000**       2.171
    83 A      1.000**       2.171
    84 D      1.000**       2.171
    95 T      1.000**       2.171
    96 N      1.000**       2.171
   100 K      1.000**       2.171
   104 E      1.000**       2.171
   105 F      1.000**       2.171
   106 D      1.000**       2.171
   107 G      1.000**       2.171
   108 V      1.000**       2.171
   109 S      1.000**       2.171
   110 K      1.000**       2.171
   111 E      1.000**       2.171
   113 E      1.000**       2.171
   119 V      1.000**       2.171
   139 S      1.000**       2.171
   144 K      1.000**       2.171
   146 E      1.000**       2.171
   148 T      1.000**       2.171
   152 A      1.000**       2.171
   159 A      1.000**       2.171
   163 F      1.000**       2.171
   164 I      1.000**       2.171
   165 L      1.000**       2.171
   167 P      1.000**       2.171
   168 N      1.000**       2.171
   169 G      1.000**       2.171
   178 D      1.000**       2.171
   183 D      1.000**       2.171
   187 E      1.000**       2.171
   191 I      1.000**       2.171
   193 R      1.000**       2.171
   197 N      1.000**       2.171
   198 V      1.000**       2.171
   199 Y      1.000**       2.171
   200 G      1.000**       2.171
   201 G      1.000**       2.171
   203 T      1.000**       2.171
   205 T      1.000**       2.171
   206 P      1.000**       2.171
   208 S      1.000**       2.171
   210 V      1.000**       2.171
   213 V      1.000**       2.171
   217 G      1.000**       2.171

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Bsg-PH)

            Pr(w>1)     post mean +- SE for w

     6 L      0.667         1.858 +- 1.109
     7 A      0.906         2.447 +- 0.691
     8 S      0.980*        2.615 +- 0.469
     9 A      0.903         2.439 +- 0.698
    10 L      0.638         1.789 +- 1.128
    11 S      0.969*        2.592 +- 0.516
    12 F      0.524         1.510 +- 1.165
    13 L      0.908         2.450 +- 0.687
    20 Y      0.648         1.812 +- 1.122
    34 A      0.878         2.381 +- 0.751
    35 E      0.865         2.350 +- 0.775
    44 R      0.622         1.749 +- 1.136
    45 S      0.993**       2.643 +- 0.419
    55 G      0.902         2.437 +- 0.702
    57 P      0.686         1.906 +- 1.094
    58 G      0.509         1.473 +- 1.166
    59 V      0.564         1.607 +- 1.160
    63 K      0.534         1.534 +- 1.164
    66 G      0.877         2.379 +- 0.750
    68 A      0.906         2.446 +- 0.692
    71 D      0.881         2.389 +- 0.745
    73 P      0.674         1.876 +- 1.104
    76 R      0.920         2.479 +- 0.661
    81 L      0.797         2.178 +- 0.965
    83 A      0.985*        2.626 +- 0.451
    95 T      0.930         2.502 +- 0.635
    96 N      0.985*        2.627 +- 0.448
   100 K      0.996**       2.650 +- 0.404
   104 E      0.889         2.406 +- 0.729
   105 F      0.893         2.415 +- 0.722
   106 D      0.957*        2.563 +- 0.541
   107 G      0.665         1.854 +- 1.110
   108 V      0.866         2.354 +- 0.772
   109 S      0.619         1.742 +- 1.138
   110 K      0.730         2.014 +- 1.040
   111 E      0.981*        2.619 +- 0.463
   113 E      0.907         2.449 +- 0.688
   119 V      0.547         1.566 +- 1.163
   144 K      0.994**       2.646 +- 0.412
   146 E      0.593         1.678 +- 1.149
   148 T      0.937         2.518 +- 0.615
   152 A      0.555         1.584 +- 1.162
   159 A      0.979*        2.613 +- 0.472
   163 F      0.899         2.430 +- 0.706
   165 L      0.583         1.653 +- 1.153
   167 P      0.728         2.009 +- 1.056
   169 G      0.909         2.453 +- 0.685
   183 D      0.967*        2.588 +- 0.510
   187 E      0.556         1.587 +- 1.160
   193 R      0.873         2.363 +- 0.819
   198 V      0.964*        2.581 +- 0.520
   199 Y      0.909         2.453 +- 0.685
   200 G      0.596         1.686 +- 1.148
   201 G      0.977*        2.610 +- 0.477
   203 T      0.967*        2.588 +- 0.509
   205 T      0.909         2.454 +- 0.684
   206 P      0.672         1.870 +- 1.105
   208 S      0.879         2.383 +- 0.747
   210 V      0.994**       2.645 +- 0.415
   213 V      0.574         1.632 +- 1.159

>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGNTTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGNTTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPDNGVPNAILTLDNVTLDDRGEYKCTGKNAAN
EYAKNTTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEKRRN
KSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGNNTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVKDTPGVLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDDGL
YSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLSWT
FGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAAND
YGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSSVLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDDG
DYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLIW
TFGNVTLTNSTDRFVLKPENNVPNAILTLDNVTLQDRGEYKCIGRNAAND
YGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEKRR
NKSELEESDTDPQEQ
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=268 

C1              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
C2              MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
C3              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
C4              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
C5              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
C6              MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
C7              MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
                *****  . :   ****** *************  ********: *****

C1              CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
C2              CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
C3              CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
C4              CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
C5              CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
C6              CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
C7              CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
                **** .*.. :***:**.* **:*.** ****:*  **********..**

C1              GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
C2              GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
C3              GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
C4              GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
C5              GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
C6              GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
C7              GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
                * ***. .  :: * *****:*******************:**** *:* 

C1              WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
C2              WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
C3              WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
C4              WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
C5              WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
C6              WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
C7              WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
                ***.****** *** ::*.  :.********:****:***:*** *:***

C1              NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C2              NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C3              NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C4              NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
C5              DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C6              NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
C7              NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
                : .. *  .*: * * **:***.***************************

C1              RRNKSELEESDTDPQEQ-
C2              RRNKSELEESDTDPQEQ-
C3              RRNKSELEESDTDPQEQ-
C4              RRNKSELEESDTDPQEQo
C5              RRNKSELEESDTDPQEQ-
C6              RRNKSELEESDTDPQEQ-
C7              RRNKSELEESDTDPQEQ-
                ***************** 




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  265 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  265 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11760]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [11760]--->[11602]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/27/Bsg-PH/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.400 Mb, Max= 30.799 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-

FORMAT of file /tmp/tmp6418182139339182766aln Not Supported[FATAL:T-COFFEE]
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGN--TTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGN--TTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGN--TTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPD-NGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKN--TTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQo
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGN--NTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVK-DTPG-VLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSS-VLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKP-ENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ-
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:268 S:99 BS:268
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES 
BOT	    0    1	 93.21 C1	 C2	 93.21
TOP	    1    0	 93.21 C2	 C1	 93.21
BOT	    0    2	 97.36 C1	 C3	 97.36
TOP	    2    0	 97.36 C3	 C1	 97.36
BOT	    0    3	 88.64 C1	 C4	 88.64
TOP	    3    0	 88.64 C4	 C1	 88.64
BOT	    0    4	 96.60 C1	 C5	 96.60
TOP	    4    0	 96.60 C5	 C1	 96.60
BOT	    0    5	 85.93 C1	 C6	 85.93
TOP	    5    0	 85.93 C6	 C1	 85.93
BOT	    0    6	 86.69 C1	 C7	 86.69
TOP	    6    0	 86.69 C7	 C1	 86.69
BOT	    1    2	 94.72 C2	 C3	 94.72
TOP	    2    1	 94.72 C3	 C2	 94.72
BOT	    1    3	 84.47 C2	 C4	 84.47
TOP	    3    1	 84.47 C4	 C2	 84.47
BOT	    1    4	 91.70 C2	 C5	 91.70
TOP	    4    1	 91.70 C5	 C2	 91.70
BOT	    1    5	 81.75 C2	 C6	 81.75
TOP	    5    1	 81.75 C6	 C2	 81.75
BOT	    1    6	 84.03 C2	 C7	 84.03
TOP	    6    1	 84.03 C7	 C2	 84.03
BOT	    2    3	 87.50 C3	 C4	 87.50
TOP	    3    2	 87.50 C4	 C3	 87.50
BOT	    2    4	 94.72 C3	 C5	 94.72
TOP	    4    2	 94.72 C5	 C3	 94.72
BOT	    2    5	 85.55 C3	 C6	 85.55
TOP	    5    2	 85.55 C6	 C3	 85.55
BOT	    2    6	 87.07 C3	 C7	 87.07
TOP	    6    2	 87.07 C7	 C3	 87.07
BOT	    3    4	 88.64 C4	 C5	 88.64
TOP	    4    3	 88.64 C5	 C4	 88.64
BOT	    3    5	 82.82 C4	 C6	 82.82
TOP	    5    3	 82.82 C6	 C4	 82.82
BOT	    3    6	 82.44 C4	 C7	 82.44
TOP	    6    3	 82.44 C7	 C4	 82.44
BOT	    4    5	 85.55 C5	 C6	 85.55
TOP	    5    4	 85.55 C6	 C5	 85.55
BOT	    4    6	 87.07 C5	 C7	 87.07
TOP	    6    4	 87.07 C7	 C5	 87.07
BOT	    5    6	 87.88 C6	 C7	 87.88
TOP	    6    5	 87.88 C7	 C6	 87.88
AVG	 0	 C1	  *	 91.40
AVG	 1	 C2	  *	 88.31
AVG	 2	 C3	  *	 91.15
AVG	 3	 C4	  *	 85.75
AVG	 4	 C5	  *	 90.71
AVG	 5	 C6	  *	 84.91
AVG	 6	 C7	  *	 85.86
TOT	 TOT	  *	 88.30
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C2              ATGGAGGCAAAATTCTGGCTAGCGCTCTTTCATTCCTCCTCGATATTTTT
C3              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C4              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C5              ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C6              ATGGAGGCGAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
C7              ATGGAGGCAAAATTCTTGGCTGGCGCTCTTTCATTCCTCTCGATATTTTT
                ********.******* *  :.      ** .:* *  ************

C1              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C2              AGCAATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
C3              AGCGATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
C4              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C5              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
C6              AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
C7              AGCGATTAATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
                ***.***:******************** ********************.

C1              CCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C2              CCATGCATCAAATGAAATTTTACGACATCAGATCGCCACTCGTTCTCAGC
C3              CCAAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C4              TCGAACATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C5              TCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
C6              TCGAGCATCAAATGAAATTTTACGACATCAGACACCCGCTGGTTCTCAGC
C7              TCGAGCATCAAATGAAATTTTACGACATCAAAACGCCGCTGGTTCTCAGC
                 *.:.*************************.* . **.** *********

C1              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C2              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C3              TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
C4              TGCAACGTGAAAGACAGTACGCCGGGCGGCCTGCTCATATGGAGAAAGAA
C5              TGCAACGTGAAAGACGGTACGCCAGGCGGCGTGCTCATATGGAAAAAGAA
C6              TGCAACGTGAAA---GACACGCCGGGC---GTGCTTATATGGAAAAAGAA
C7              TGCAACGTGAAAGAAGATACGTCGAGC---GTTCTTATATGGAAAAAGAA
                ************   .. *** *..**    * ** *******.******

C1              CGGCACCGCTGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAA
C2              CGGCACCGCTGTGACGGAGGTACCTTCTCTAATAGGTCGCTTTAAGTTAA
C3              CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
C4              CGGCACCGTTGTGACGGAAGTAGCTTCTCTAAGAGGTCGCTTTAAGTTAA
C5              CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
C6              CAACACCGATGTGACGCAGGTGCCTTCGCTGAAAGGTCGCTTTAAGCTAA
C7              CGGCACCGCTGTGACGGAGGTGCCTTCGCTAAAGGGTCGCTTTAAGATAA
                *..***** ******* * **. **** ** * .************ ***

C1              TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C2              TCCCAGACGAGAATAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C3              TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
C4              TCCCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGACCGACGAT
C5              TCGCAGACGAGAACAAGTTTATCATCGATAAGACGGATACGAACGACGAT
C6              TCGAAGCCGAGAACAAGTTCATCATCGACAAGACGGACGCATCCGACGAT
C7              TCGCAGCCGAGAATAAGTTCATCATCGACAAGACGGATGTAAGCGATGAT
                ** .**.****** ***** ******** ******** . .: *** ***

C1              GGCAAATACAGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAAT
C2              GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
C3              GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
C4              GGCGAATACAGTTGCGAGTACAGTGGAGAGACCAAGAAAATCGAAGTAAT
C5              GGCAAATACAGTTGCGAGTTCGACGGAGTGTCCAAGGAAATCGAAGTGAT
C6              GGTCTTTACAGTTGCTCGATCAACGAAGAGTCCCGGAATATCACAGTGAT
C7              GGCGATTACAGTTGCGAGATCGACGGAGAGTCCAAGATAATCAAAGTGAT
                **  ::********* .*:: .. *..*:*:**..*.::***..***.**

C1              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C2              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C3              TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C4              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C5              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C6              TGCCCGCGTTATTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
C7              TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGAG
                **********.*****.*******************************:*

C1              AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACA
C2              AAAAGATGTCGGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACA
C3              AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACA
C4              AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACA
C5              AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACA
C6              AGAAGATGTCGGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCA
C7              AGAAGATGTCGGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATA
                *.************** ****  ***** **:***..:**  *****: *

C1              TGGACCTTTGCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCT
C2              TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
C3              TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
C4              TGGACCTTTGGCAATGTAACGCTGACAAACGACACAGATCGCGTCATCGT
C5              TGGACCTTTGCCAATGTAACGCTGACAAACGGCACAGATCGCTTCATCCT
C6              TGGACCTTTGGCAATGTAACGCTGACAAACTCCACAGATCGTTACATCCT
C7              TGGACTTTTGGCAATGTAACGCTGACAAACTCAACGGATCGCTTCGTCCT
                ***** **** ******************   .**.*****  :*.*  *

C1              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATG
C2              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
C3              CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
C4              CAAACCAGAT---AATGGTGTTCCTAACGCCATTCTGACACTGGACAATG
C5              CAAACCAGACGATAATGGTGTTCCCAACGCCATTCTGACACTGGATAATG
C6              CAAGGCGGACGAGGACAATGTCCCCAACGCCATTCTGACATTGGACAATG
C7              CAAACCA---GAAAACAATGTCCCCAACGCCATTCTGACACTGGACAATG
                ***. *.      .* ..*** ** *************** **** ****

C1              TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C2              TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C3              TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C4              TGACATTGGACGACAGAGGCGAATACAAATGCACTGGAAAAAATGCGGCC
C5              TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
C6              TGACATTGGACGACAGAGGCGACTACAAATGCATTGGACGCAATGCGGCC
C7              TGACATTGCAAGACAGAGGCGAGTACAAATGCATTGGACGCAATGCGGCC
                ******** *.*********** ********** ****...*********

C1              AATGTCTACGGTGGGAAC------ACCACCACTCCTGCCAGCGACGTCAC
C2              AATGTCCACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACTTCAC
C3              AATGTCTACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACGTCAC
C4              AATGAATACGCTAAGAAC------ACCACTACTCTTGCCACCGACGCCAC
C5              GATGCCTTCGGTGGGAAC------AACACCACTCCTGCCAGCGACTTCAC
C6              AATGACTACGGTGTGAATGGCACCAACACCGCCCCTGCCATCGACGTCAC
C7              AATGACTATGGTGTGAACGGCACCAGCACTGCTCCTGCCAGCGACTTCAC
                .*** . : * *. ***       * *** .* * ***** ****  ***

C1              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C2              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C3              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C4              AACTCTTCGTGTTAAGAGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C5              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C6              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
C7              AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
                **** * *********.*********************************

C1              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C2              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C3              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C4              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C5              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
C6              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTACGAGAAG
C7              TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTATGAGAAG
                **************************************** ** ******

C1              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C2              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C3              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C4              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C5              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C6              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
C7              CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCTCAAGAACA
                ***************************************** ********

C1              G---
C2              G---
C3              G---
C4              G---
C5              G---
C6              G---
C7              G---
                *   



>C1
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
CCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGATGTACCTTCTCTCAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTTGACGGCGTGTCCAAGGAAATCGAAGTAAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAAACCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAATGCCACAGATCGCTTCATTCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGATAATG
TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCTACGGTGGGAAC------ACCACCACTCCTGCCAGCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C2
ATGGAGGCAAAATTCTGGCTAGCGCTCTTTCATTCCTCCTCGATATTTTT
AGCAATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
CCATGCATCAAATGAAATTTTACGACATCAGATCGCCACTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAATAGGTCGCTTTAAGTTAA
TCCCAGACGAGAATAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGTGTTGTGGGTACCAAACCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCCACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C3
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGTTGGTGCCAAACTATGATAATG
CCAAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCGGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGAGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTACGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AAAAGATGTCGGTGACCTGCAGCGTTGTGGGTACCAATCCAGAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGCCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCTAACGCCATTCTGACACTGGAAAATG
TGACATTGGAAGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
AATGTCTACGGTGGGAAC------ACCACCGCTCCTGCCAGCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C4
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
TCGAACATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACAGTACGCCGGGCGGCCTGCTCATATGGAGAAAGAA
CGGCACCGTTGTGACGGAAGTAGCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCCCAGACGAGAACAAGTTCATCATCGATAAGACGGATACGACCGACGAT
GGCGAATACAGTTGCGAGTACAGTGGAGAGACCAAGAAAATCGAAGTAAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCACAGTTGACA
TGGACCTTTGGCAATGTAACGCTGACAAACGACACAGATCGCGTCATCGT
CAAACCAGAT---AATGGTGTTCCTAACGCCATTCTGACACTGGACAATG
TGACATTGGACGACAGAGGCGAATACAAATGCACTGGAAAAAATGCGGCC
AATGAATACGCTAAGAAC------ACCACTACTCTTGCCACCGACGCCAC
AACTCTTCGTGTTAAGAGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C5
ATGGAGGCAAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATG
TCGAGCATCAAATGAAATTTTACGACATCAGATCGCCGCTCGTTCTCAGC
TGCAACGTGAAAGACGGTACGCCAGGCGGCGTGCTCATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTACCTTCTCTAAGAGGTCGCTTTAAGTTAA
TCGCAGACGAGAACAAGTTTATCATCGATAAGACGGATACGAACGACGAT
GGCAAATACAGTTGCGAGTTCGACGGAGTGTCCAAGGAAATCGAAGTGAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTGGGAACCAAACCTCAGTTGACA
TGGACCTTTGCCAATGTAACGCTGACAAACGGCACAGATCGCTTCATCCT
CAAACCAGACGATAATGGTGTTCCCAACGCCATTCTGACACTGGATAATG
TGACATTGGACGACAGAGGCGAATACAAATGCATTGGACGAAATGCGGCC
GATGCCTTCGGTGGGAAC------AACACCACTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATTTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C6
ATGGAGGCGAAATTCTTGGCTAGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTTATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
TCGAGCATCAAATGAAATTTTACGACATCAGACACCCGCTGGTTCTCAGC
TGCAACGTGAAA---GACACGCCGGGC---GTGCTTATATGGAAAAAGAA
CAACACCGATGTGACGCAGGTGCCTTCGCTGAAAGGTCGCTTTAAGCTAA
TCGAAGCCGAGAACAAGTTCATCATCGACAAGACGGACGCATCCGACGAT
GGTCTTTACAGTTGCTCGATCAACGAAGAGTCCCGGAATATCACAGTGAT
TGCCCGCGTTATTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGTG
AGAAGATGTCGGTGACCTGCAGCGTTGTTGGTACCGATCCCCAGTTGTCA
TGGACCTTTGGCAATGTAACGCTGACAAACTCCACAGATCGTTACATCCT
CAAGGCGGACGAGGACAATGTCCCCAACGCCATTCTGACATTGGACAATG
TGACATTGGACGACAGAGGCGACTACAAATGCATTGGACGCAATGCGGCC
AATGACTACGGTGTGAATGGCACCAACACCGCCCCTGCCATCGACGTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTACGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCCCAAGAACA
G---
>C7
ATGGAGGCAAAATTCTTGGCTGGCGCTCTTTCATTCCTCTCGATATTTTT
AGCGATTAATGCTCAATCACTTGATAAGCTGGTGCCAAACTATGATAATA
TCGAGCATCAAATGAAATTTTACGACATCAAAACGCCGCTGGTTCTCAGC
TGCAACGTGAAAGAAGATACGTCGAGC---GTTCTTATATGGAAAAAGAA
CGGCACCGCTGTGACGGAGGTGCCTTCGCTAAAGGGTCGCTTTAAGATAA
TCGCAGCCGAGAATAAGTTCATCATCGACAAGACGGATGTAAGCGATGAT
GGCGATTACAGTTGCGAGATCGACGGAGAGTCCAAGATAATCAAAGTGAT
TGCCCGCGTTGTTGTAAGAGTGCCTTCAAATACAGCCGTTGTGGAGGGAG
AGAAGATGTCGGTGACTTGCACCGTTGTGGGTACCGCACCACAGTTGATA
TGGACTTTTGGCAATGTAACGCTGACAAACTCAACGGATCGCTTCGTCCT
CAAACCA---GAAAACAATGTCCCCAACGCCATTCTGACACTGGACAATG
TGACATTGCAAGACAGAGGCGAGTACAAATGCATTGGACGCAATGCGGCC
AATGACTATGGTGTGAACGGCACCAGCACTGCTCCTGCCAGCGACTTCAC
AACTGTGCGTGTTAAGGGCAAATTTGCCGCCTTGTGGCCTTTCCTGGGCA
TCTGTGCTGAGGTGCTGATTCTGTGCATCATCATTCTCATCTATGAGAAG
CGACGCAACAAGAGCGAACTGGAGGAGAGTGATACTGATCCTCAAGAACA
G---
>C1
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTDVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
NVYGGNooTTTPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C2
MEAKFWLALFHSSSIFLAIYAQSLDKLVPNYDNAMHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLIGRFKLIPDENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVHGGNooTTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C3
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNAKHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGESKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTNPELT
WTFANVTLTNATDRFILKPDDNGVPNAILTLENVTLEDRGEYKCIGRNAA
NVYGGNooTTAPASDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C4
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDSTPGGLLIWRKNGTVVTEVASLRGRFKLIPDENKFIIDKTDTTDD
GEYSCEYSGETKKIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFGNVTLTNDTDRVIVKPDoNGVPNAILTLDNVTLDDRGEYKCTGKNAA
NEYAKNooTTTLATDATTLRVKSKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C5
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNVEHQMKFYDIRSPLVLS
CNVKDGTPGGVLIWKKNGTAVTEVPSLRGRFKLIADENKFIIDKTDTNDD
GKYSCEFDGVSKEIEVIARVVVRVPSNTAVVEGEKMSVTCSVVGTKPQLT
WTFANVTLTNGTDRFILKPDDNGVPNAILTLDNVTLDDRGEYKCIGRNAA
DAFGGNooNTTPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C6
MEAKFLASALSFLSIFLAIYAQSLDKLVPNYDNIEHQMKFYDIRHPLVLS
CNVKoDTPGoVLIWKKNNTDVTQVPSLKGRFKLIEAENKFIIDKTDASDD
GLYSCSINEESRNITVIARVIVRVPSNTAVVEGEKMSVTCSVVGTDPQLS
WTFGNVTLTNSTDRYILKADEDNVPNAILTLDNVTLDDRGDYKCIGRNAA
NDYGVNGTNTAPAIDVTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ
>C7
MEAKFLAGALSFLSIFLAINAQSLDKLVPNYDNIEHQMKFYDIKTPLVLS
CNVKEDTSSoVLIWKKNGTAVTEVPSLKGRFKIIAAENKFIIDKTDVSDD
GDYSCEIDGESKIIKVIARVVVRVPSNTAVVEGEKMSVTCTVVGTAPQLI
WTFGNVTLTNSTDRFVLKPoENNVPNAILTLDNVTLQDRGEYKCIGRNAA
NDYGVNGTSTAPASDFTTVRVKGKFAALWPFLGICAEVLILCIIILIYEK
RRNKSELEESDTDPQEQ


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 7 taxa and 804 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Taxon 6 -> C6
      Taxon 7 -> C7
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1479467318
      Setting output file names to "/opt/ADOPS/27/Bsg-PH/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 1198977085
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 8645811969
      Seed = 1942543022
      Swapseed = 1479467318
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 50 unique site patterns
      Division 2 has 48 unique site patterns
      Division 3 has 56 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -2721.204680 -- -24.557203
         Chain 2 -- -2712.778973 -- -24.557203
         Chain 3 -- -2719.642580 -- -24.557203
         Chain 4 -- -2712.782896 -- -24.557203

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -2702.795657 -- -24.557203
         Chain 2 -- -2713.379331 -- -24.557203
         Chain 3 -- -2733.849346 -- -24.557203
         Chain 4 -- -2715.609833 -- -24.557203


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-2721.205] (-2712.779) (-2719.643) (-2712.783) * [-2702.796] (-2713.379) (-2733.849) (-2715.610) 
        500 -- (-2182.707) [-2190.344] (-2190.262) (-2198.518) * [-2186.091] (-2194.796) (-2188.758) (-2193.867) -- 0:00:00
       1000 -- (-2171.926) [-2181.752] (-2176.121) (-2186.107) * [-2184.910] (-2188.475) (-2181.308) (-2185.137) -- 0:00:00
       1500 -- [-2173.709] (-2185.987) (-2176.852) (-2178.053) * (-2174.797) [-2180.062] (-2178.376) (-2178.212) -- 0:00:00
       2000 -- [-2168.576] (-2181.786) (-2174.233) (-2184.224) * (-2169.900) (-2178.796) [-2179.980] (-2171.696) -- 0:00:00
       2500 -- (-2173.843) [-2173.893] (-2173.274) (-2186.801) * [-2178.329] (-2180.014) (-2173.265) (-2170.785) -- 0:00:00
       3000 -- (-2177.527) (-2173.037) (-2170.759) [-2178.445] * (-2174.205) (-2181.098) [-2175.228] (-2172.480) -- 0:05:32
       3500 -- (-2180.337) [-2167.863] (-2172.599) (-2176.393) * (-2174.104) (-2176.635) [-2183.673] (-2175.591) -- 0:04:44
       4000 -- (-2175.136) (-2175.598) [-2172.002] (-2174.813) * [-2175.588] (-2176.906) (-2179.594) (-2171.779) -- 0:04:09
       4500 -- [-2178.010] (-2189.788) (-2170.297) (-2176.350) * [-2173.009] (-2178.794) (-2172.588) (-2168.663) -- 0:03:41
       5000 -- (-2181.168) (-2170.393) [-2166.871] (-2172.107) * (-2172.635) (-2178.054) [-2174.308] (-2177.842) -- 0:03:19

      Average standard deviation of split frequencies: 0.026189

       5500 -- (-2181.309) (-2169.000) [-2174.077] (-2174.367) * (-2175.554) [-2175.051] (-2173.968) (-2182.135) -- 0:03:00
       6000 -- (-2172.046) (-2176.403) (-2171.210) [-2177.502] * (-2179.283) (-2178.656) (-2171.594) [-2181.076] -- 0:05:31
       6500 -- [-2167.836] (-2172.637) (-2176.325) (-2172.192) * (-2172.045) (-2180.278) (-2173.035) [-2176.221] -- 0:05:05
       7000 -- (-2170.458) (-2177.956) (-2174.987) [-2169.671] * [-2167.347] (-2172.233) (-2182.309) (-2174.559) -- 0:04:43
       7500 -- (-2176.479) [-2175.575] (-2171.818) (-2168.630) * (-2173.888) [-2173.540] (-2179.003) (-2175.601) -- 0:04:24
       8000 -- [-2169.163] (-2173.829) (-2170.533) (-2170.950) * (-2180.792) [-2172.144] (-2177.339) (-2177.688) -- 0:04:08
       8500 -- (-2168.053) (-2179.289) [-2175.225] (-2174.536) * [-2174.432] (-2169.875) (-2173.738) (-2173.777) -- 0:03:53
       9000 -- (-2172.195) (-2170.250) [-2170.880] (-2173.467) * (-2170.597) [-2174.124] (-2171.933) (-2183.065) -- 0:03:40
       9500 -- [-2174.627] (-2186.648) (-2176.219) (-2176.779) * (-2172.414) (-2180.837) [-2169.385] (-2177.593) -- 0:05:12
      10000 -- (-2174.576) (-2170.889) [-2172.751] (-2169.720) * (-2175.144) (-2176.895) (-2178.227) [-2174.815] -- 0:04:57

      Average standard deviation of split frequencies: 0.008839

      10500 -- (-2170.911) (-2177.715) (-2180.133) [-2172.929] * (-2174.587) (-2177.684) (-2172.449) [-2176.382] -- 0:04:42
      11000 -- (-2168.055) (-2176.139) [-2169.476] (-2171.499) * (-2169.290) [-2175.752] (-2168.979) (-2182.567) -- 0:04:29
      11500 -- (-2175.144) [-2179.400] (-2175.504) (-2175.800) * (-2176.367) [-2170.201] (-2180.522) (-2181.096) -- 0:04:17
      12000 -- [-2172.042] (-2181.109) (-2172.979) (-2175.124) * (-2174.386) [-2170.693] (-2175.914) (-2175.946) -- 0:04:07
      12500 -- [-2176.079] (-2168.363) (-2191.329) (-2174.636) * (-2171.842) (-2170.151) [-2167.383] (-2185.818) -- 0:05:16
      13000 -- (-2172.248) (-2177.990) [-2175.953] (-2172.072) * (-2173.807) (-2171.557) [-2171.727] (-2177.938) -- 0:05:03
      13500 -- (-2176.636) [-2171.644] (-2171.246) (-2172.563) * (-2173.328) (-2174.908) [-2169.394] (-2169.749) -- 0:04:52
      14000 -- (-2171.983) (-2176.874) [-2172.101] (-2172.210) * (-2171.701) [-2178.311] (-2175.495) (-2172.511) -- 0:04:41
      14500 -- (-2175.403) [-2176.918] (-2178.296) (-2168.584) * (-2171.408) (-2173.732) (-2175.065) [-2175.789] -- 0:04:31
      15000 -- (-2179.330) (-2175.981) (-2172.492) [-2171.721] * (-2172.154) (-2175.811) (-2177.618) [-2174.978] -- 0:04:22

      Average standard deviation of split frequencies: 0.011785

      15500 -- [-2174.110] (-2174.061) (-2179.975) (-2179.191) * (-2178.099) (-2173.551) [-2168.629] (-2167.356) -- 0:05:17
      16000 -- (-2172.801) (-2172.478) [-2177.642] (-2171.847) * [-2172.896] (-2173.199) (-2172.513) (-2177.058) -- 0:05:07
      16500 -- (-2170.890) (-2179.915) [-2171.863] (-2177.543) * [-2175.978] (-2174.431) (-2170.369) (-2175.265) -- 0:04:58
      17000 -- (-2172.599) (-2172.018) (-2174.007) [-2175.856] * (-2184.062) (-2174.679) (-2183.613) [-2169.988] -- 0:04:49
      17500 -- [-2171.956] (-2185.116) (-2171.147) (-2175.327) * [-2179.594] (-2170.794) (-2172.148) (-2176.876) -- 0:04:40
      18000 -- (-2176.380) (-2178.041) (-2173.500) [-2165.981] * [-2174.741] (-2175.641) (-2176.263) (-2178.923) -- 0:04:32
      18500 -- (-2173.234) (-2167.426) (-2181.544) [-2170.961] * (-2176.989) (-2170.430) [-2170.548] (-2179.767) -- 0:04:25
      19000 -- [-2174.793] (-2171.684) (-2184.839) (-2172.418) * (-2180.602) (-2174.231) [-2174.132] (-2176.645) -- 0:05:09
      19500 -- (-2179.094) [-2172.960] (-2180.012) (-2172.823) * (-2183.263) (-2175.723) [-2173.847] (-2178.096) -- 0:05:01
      20000 -- (-2176.516) [-2168.168] (-2178.129) (-2179.616) * (-2173.343) [-2174.845] (-2174.872) (-2182.671) -- 0:04:54

      Average standard deviation of split frequencies: 0.007603

      20500 -- (-2173.553) (-2169.742) (-2173.706) [-2177.837] * (-2173.974) (-2173.030) [-2176.466] (-2176.330) -- 0:04:46
      21000 -- (-2170.989) (-2171.503) [-2173.912] (-2176.078) * [-2175.059] (-2171.701) (-2176.949) (-2179.575) -- 0:04:39
      21500 -- (-2177.983) [-2174.579] (-2172.889) (-2178.609) * (-2171.253) (-2175.033) [-2172.155] (-2174.098) -- 0:04:33
      22000 -- [-2177.794] (-2170.041) (-2175.867) (-2177.245) * (-2177.710) [-2185.704] (-2172.537) (-2176.744) -- 0:05:11
      22500 -- [-2167.074] (-2172.032) (-2177.383) (-2176.290) * (-2178.547) [-2171.014] (-2180.580) (-2171.210) -- 0:05:04
      23000 -- [-2176.129] (-2173.191) (-2173.587) (-2174.895) * (-2172.888) (-2173.246) [-2174.227] (-2173.752) -- 0:04:57
      23500 -- (-2174.803) [-2171.939] (-2170.580) (-2173.922) * (-2173.603) (-2170.881) [-2177.267] (-2186.980) -- 0:04:50
      24000 -- [-2167.779] (-2178.474) (-2172.367) (-2182.270) * [-2173.942] (-2173.114) (-2182.246) (-2175.625) -- 0:04:44
      24500 -- [-2176.083] (-2175.996) (-2176.990) (-2189.329) * (-2175.205) (-2178.090) [-2172.718] (-2178.153) -- 0:04:38
      25000 -- (-2173.442) (-2176.178) [-2178.249] (-2175.172) * [-2168.122] (-2179.070) (-2182.967) (-2168.229) -- 0:04:33

      Average standard deviation of split frequencies: 0.006044

      25500 -- (-2172.238) [-2171.648] (-2177.757) (-2184.172) * (-2171.890) [-2170.691] (-2174.112) (-2175.324) -- 0:05:05
      26000 -- (-2171.287) (-2176.911) [-2181.765] (-2178.373) * (-2174.296) (-2170.133) (-2176.087) [-2173.314] -- 0:04:59
      26500 -- [-2170.173] (-2172.422) (-2172.542) (-2176.081) * (-2172.953) (-2178.851) [-2172.095] (-2172.847) -- 0:04:53
      27000 -- (-2177.450) [-2176.027] (-2182.807) (-2178.919) * (-2172.148) (-2183.117) [-2169.693] (-2170.308) -- 0:04:48
      27500 -- (-2174.465) (-2186.555) [-2172.573] (-2181.388) * [-2174.403] (-2172.155) (-2176.643) (-2180.333) -- 0:04:42
      28000 -- (-2173.077) (-2185.502) [-2174.832] (-2175.674) * [-2170.802] (-2188.276) (-2174.671) (-2176.415) -- 0:04:37
      28500 -- [-2174.213] (-2185.649) (-2176.751) (-2178.205) * (-2170.911) (-2187.629) (-2172.349) [-2172.942] -- 0:05:06
      29000 -- [-2177.006] (-2179.934) (-2174.691) (-2179.452) * (-2172.222) (-2183.285) (-2174.645) [-2168.705] -- 0:05:01
      29500 -- (-2180.682) (-2181.982) [-2173.942] (-2180.799) * (-2179.424) (-2175.728) (-2175.375) [-2177.922] -- 0:04:56
      30000 -- (-2177.355) (-2175.189) (-2173.151) [-2179.345] * (-2173.911) (-2176.773) (-2173.409) [-2171.806] -- 0:04:51

      Average standard deviation of split frequencies: 0.003074

      30500 -- (-2171.688) [-2175.674] (-2170.384) (-2179.808) * (-2173.628) (-2179.307) (-2177.584) [-2174.812] -- 0:04:46
      31000 -- [-2171.023] (-2174.388) (-2174.674) (-2171.738) * [-2173.172] (-2177.245) (-2175.050) (-2172.078) -- 0:04:41
      31500 -- (-2179.350) (-2175.419) (-2173.829) [-2172.326] * [-2175.667] (-2176.118) (-2180.901) (-2173.936) -- 0:05:07
      32000 -- [-2169.929] (-2187.572) (-2177.098) (-2169.960) * (-2175.328) (-2173.039) (-2174.189) [-2176.802] -- 0:05:02
      32500 -- (-2177.399) (-2175.244) (-2176.634) [-2176.369] * (-2177.086) [-2174.625] (-2179.028) (-2176.575) -- 0:04:57
      33000 -- (-2180.520) [-2181.868] (-2179.965) (-2170.017) * (-2183.383) (-2185.694) [-2180.969] (-2170.024) -- 0:04:53
      33500 -- (-2172.591) (-2176.700) [-2170.361] (-2171.101) * (-2176.261) (-2173.603) (-2180.265) [-2168.558] -- 0:04:48
      34000 -- (-2171.109) [-2176.406] (-2176.640) (-2175.612) * (-2176.738) (-2172.866) (-2180.333) [-2178.779] -- 0:04:44
      34500 -- (-2178.007) [-2173.057] (-2168.524) (-2170.814) * (-2175.358) [-2181.501] (-2187.183) (-2181.673) -- 0:04:39
      35000 -- (-2175.452) (-2179.837) [-2173.821] (-2177.330) * (-2172.619) (-2178.903) [-2181.103] (-2172.216) -- 0:05:03

      Average standard deviation of split frequencies: 0.002619