--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Thu Nov 17 05:00:00 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/251/fru-PM/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -8895.01 -8908.98
2 -8895.03 -8907.79
--------------------------------------
TOTAL -8895.02 -8908.55
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/251/fru-PM/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.958683 0.002813 0.858756 1.071213 0.957581 1346.64 1423.82 1.000
r(A<->C){all} 0.085514 0.000122 0.063775 0.106662 0.085176 1089.81 1103.65 1.000
r(A<->G){all} 0.208931 0.000334 0.174187 0.244250 0.208600 864.36 947.81 1.000
r(A<->T){all} 0.128906 0.000328 0.093931 0.164595 0.128651 870.40 917.33 1.000
r(C<->G){all} 0.044863 0.000045 0.032183 0.058024 0.044775 839.27 1039.41 1.000
r(C<->T){all} 0.418392 0.000565 0.372041 0.464278 0.418020 638.44 857.90 1.001
r(G<->T){all} 0.113393 0.000198 0.086398 0.141152 0.113065 791.52 889.06 1.000
pi(A){all} 0.225711 0.000056 0.210310 0.239374 0.225626 947.93 1184.30 1.000
pi(C){all} 0.308954 0.000069 0.292927 0.325277 0.308928 1171.92 1286.61 1.001
pi(G){all} 0.298300 0.000068 0.281738 0.313929 0.298223 1207.82 1253.36 1.000
pi(T){all} 0.167035 0.000041 0.154538 0.179261 0.167021 778.10 925.33 1.001
alpha{1,2} 0.156162 0.000186 0.130413 0.183189 0.155616 1314.18 1340.23 1.000
alpha{3} 3.957193 0.892502 2.182457 5.614750 3.855627 1353.73 1359.02 1.000
pinvar{all} 0.403060 0.000744 0.349652 0.456724 0.403616 1193.46 1236.11 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -7683.391064
Model 2: PositiveSelection -7683.39107
Model 0: one-ratio -7811.898245
Model 3: discrete -7674.754016
Model 7: beta -7678.6179
Model 8: beta&w>1 -7674.741771
Model 0 vs 1 257.0143619999999
Model 2 vs 1 1.199999860546086E-5
Model 8 vs 7 7.752258000000438
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PM)
Pr(w>1) post mean +- SE for w
655 A 0.987* 3.502
667 H 0.889 3.214
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PM)
Pr(w>1) post mean +- SE for w
77 S 0.661 1.133 +- 0.533
516 N 0.888 1.404 +- 0.277
517 H 0.668 1.172 +- 0.483
523 I 0.684 1.204 +- 0.450
539 E 0.901 1.415 +- 0.262
573 G 0.857 1.372 +- 0.323
634 N 0.814 1.330 +- 0.366
654 H 0.582 1.096 +- 0.494
655 A 0.989* 1.492 +- 0.081
665 A 0.767 1.276 +- 0.421
666 T 0.543 0.992 +- 0.579
667 H 0.982* 1.486 +- 0.105
679 S 0.709 1.227 +- 0.440
683 A 0.793 1.301 +- 0.402
684 G 0.554 1.006 +- 0.576
688 V 0.500 0.939 +- 0.589
690 I 0.813 1.322 +- 0.382
692 G 0.601 1.063 +- 0.560
699 T 0.915 1.426 +- 0.249
>C1
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
AGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGNN
NNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTPV
EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHN
DAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVIEEVV
VDHVREMEAGNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASGSG
SDIYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCPA
EAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSATHPSHS
QSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPSSS
STGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNK
IVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSH
YVHMooooooooooooo
>C2
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
AGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGNN
NNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTPV
EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHN
DAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVMEEVI
VDHGREMEAGNNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASAS
GSDVYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCP
AEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSTPHPSH
SQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPSS
SSTGSTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSC
NKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFF
SHYVHMooooooooooo
>C3
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
AGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNNNNNSSSNNNNSSNRERNNSGERERERERERERERDRDRELSTTPVEQ
LSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSE
SEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDAQ
QQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHN
DAKQLQLDQTDNIDGRVKCFNIKHDHLRHPDRELDRIHREHDDDPGVIEE
VVVDRGREMDAGDEQEPEEMKEATYHATPPKYRRAVVYAPPHPDEEAASG
SGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLIDC
PAEAAYSPPVVSNQTYLASNGAVQQLDLSSYHSHGHANHQHHQHPPPAPH
PSHSQGSPHYPPASVAGAGSVSVSIAGSASGSAISAPASVATSAVSPQPS
SSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSC
NKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFF
SHYVHMooooooooooo
>C4
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
AGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPERELDRNHREHDDDPGVIE
EVVVEHGRRMDAGDEQDPEEMKEVAYHATPPKYRRAVVYAPPHPDEEAAS
GSGSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSL
IDCPAEAAYSPPVASNQAYLASNGAVQQLDLSSYHGHASHQHHQHPPSAP
HPPSHSQSSPHYPPASGAGVGVGAGSGSVSVAIAGSASGSAISAPASVAT
SAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLP
TLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKH
ADIKDRFFSHYVHMooo
>C5
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGMGG
AGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDRDRELSTTPV
DQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELMD
AQQQQQHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREEHN
DTKQLQLDQTDNIDGRVKCFNSKHDRHPDREQDRNHREHDDPRGVVDEVV
VDRDRDRDMDAEEDQEPEEMEEAPYHAAPPKYRRAVVYAPPHPDEEAASG
SASGSDIYVDGGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRAL
MDCPAEAAYSPPVASNQAYLGSNGSVQQLDLSSYHGHGSHHHHHPHHPPL
AMATAPPPSHSQSSPHYPAASGSATGSGSAAGSVSVSISGSASGSATSAP
ASVATSAVSPQPSSSSTGSTSTSLAAAAAAAANRRDHNIDYSTLFVQLSG
TLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCK
IKHADIKDRFFSHYVHM
>C6
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
SGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNSSNNNNNNNSSSNNNNNNRERNNSRERERERERERERDRDRELSTTPV
EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGNVGAASALSGLSQSLSIKQELMDA
QQQQQHREHHVALPPDYLPSSALKMHAEDMSTLLTQHALQAADARDEHND
AKQLQLDQTDNIDGRVKCFISKHDRSHPDGIRELDRERERDREREREHDD
QGGIIDEVVVDHDRDMDAEEDLESAEDIKEAAYHAAPPKYRRAVVYAPPH
PDEEAASALGSEIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHP
HHHRSLMDCPAEAAYSPPVASNQAYMSSNGAVQQLDLSSYHGHGSHHHHH
PSPLPMAPAPPPSLSQSSPHYPTASGSGSVSVSISGSGSGSAISAPASVS
ATSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGT
LPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKI
KHADIKDRFFSHYVHMo
>C7
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
AGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNNNNNNNSSSNNNNNNRERNNSRERERERERERERERDRDRELSTTPVE
QLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTS
ESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDA
QQQQQHREHHVGLPPDYLPSSALKMHAEDMSTLLSQHAMQAADAREEHND
TKQLQLDQTDNIDGRVKCFNIKHDRHPDREQDRNLKHDSGVGEVLVVDRD
RDMDAEEEPEPEDIEEAAAYHHATPPKYRRAVVYAPPHPDEEVASASGSE
IYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSMMECPAEA
AYSPPVVASSPAYLTSNGAVQQLDLSSYHGTHHHHHHHHPAPLPLAPAPP
SSHPQSSPHYPTASVSVSGSGSGSGSVSISGSVSAASAPPSVATSAISPQ
PSSSSSGSTGSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRC
VSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKD
RFFSHYVHMoooooooo
>C8
MDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYAGGAGG
VADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAVAAA
GGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVAAAVAAAANRSAS
ADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNNNNNNN
NNNNSSSNNNNNNRERNNSRERERERERERDRDRELSTTPVEQLSSSKRR
RKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSESEDAGGR
HDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDAQQQQQHRE
HHVGLPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHNDAKQLQLDQ
TDNIDGRVKCFNSKHEPHPDREQDRNREPDHGVIEEVVVDRDRDMDVEED
HEPADIEESAYHGTPPKYRRAVVYAPPHPDEEAASRSGSEIYVDGGYNCE
YKCKELNMRAIRCSRQQHLLSHYPPHHPHHRSLMDCPAEAAYSPPVANSQ
AYLTSNGAVQQLDLASYHGHGPHHNHHHPPPLPPAPAPPSHSQSSPHYPA
ASGLGLGSGSGSGSVSISGSGSAISAPASVANSAISPQPSSSSSGSTSSA
AAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRWHH
ANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoooo
ooooooooooooooooo
>C9
MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
SGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
NNNNNNNSSSNNNNRERNNSRERERERERERERDRDRELSTTPVDQLSSS
KRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSESEDA
GGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELMDAQHQQQ
HREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREDHNDSKQLQ
LDQTDNIDGRVKCFNSKHDRHPDREQDRVHREHDEQGQVVDEVVVDRDRD
RDMDAEEDHEPEDIEEAAMPYHNAPPKYRRAVVYAPPHPDEEAASGSGSD
IYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLMDCPAEA
AYSPPVVNSQQAYLGSNGSQLDLSSYHGGHHHHQHHHHHPHPPPLPAPPP
PSHSQSSPHYPTASGSSGSVAVSITGSGSGSGSAAGSAISAPASVATSSV
SPQPSSSSTGSTTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLP
TLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKH
ADIKDRFFSHYVHMooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=919
C1 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C2 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C3 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C4 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C5 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C6 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C7 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C8 MDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
C9 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSA
*************:************************************
C1 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C2 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C3 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C4 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C5 CSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLPM
C6 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C7 CSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLPM
C8 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
C9 CSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPM
**************************:***********************
C1 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C2 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C3 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C4 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C5 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGMGG
C6 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C7 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
C8 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYAG---G
C9 FLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLGG
********************************************:* *
C1 AGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C2 AGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C3 AGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C4 AGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C5 AGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C6 SGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C7 AGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
C8 AGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERS--SAAAAAAAA
C9 SGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAAA
:********:**::************************* :********
C1 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C2 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C3 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C4 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C5 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C6 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C7 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
C8 AVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVAAAVAAAA
C9 AVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAAA
*********************:****************************
C1 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGNN
C2 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGNN
C3 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTG-NN
C4 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTG-NN
C5 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
C6 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
C7 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
C8 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
C9 NRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNNN
*********************************************** **
C1 NNNNNNNNN--SSSNNNNSSSNRERNNSGERERERERERER--DRDRELS
C2 NNNNNNNNN--SSSNNNNSSSNRERNNSGERERERERERER--DRDRELS
C3 NNNNNNNSS--SNNNN---SSNRERNNSGERERERERERERERDRDRELS
C4 NNNNNNNNS--SSNNNNNSSSNRERNNSGERERERERERERERDRDRELS
C5 NNNNNNNNNNSSSNNN----NNRERHNSRERERERERERERERDRDRELS
C6 NNSSNNNNNNNSSSNNN--NNNRERNNSRERERERERERE--RDRDRELS
C7 NN--NNNNNN-SSSNNN--NNNRERNNSRERERERERERERERDRDRELS
C8 NN--NNNNNNNSSSNNN--NNNRERNNSRERERERERE----RDRDRELS
C9 NNNNNNN----SSSNN----NNRERNNSRERERERERERER--DRDRELS
** *** *..** .****:** ********* *******
C1 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C2 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C3 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C4 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C5 TTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C6 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C7 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C8 TTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
C9 TTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKT
****:*********************************************
C1 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C2 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C3 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C4 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C5 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQ
C6 GGSTSESEDAGGRHDSPLSMTTSVHLGGGG-NVGAASALSGLSQSLSIKQ
C7 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C8 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQ
C9 GGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQ
****************************** ***********.*******
C1 ELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAAD
C2 ELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAAD
C3 ELMDAQQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAAD
C4 ELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAAD
C5 ELMDAQQQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAAD
C6 ELMDAQQQQQ--HREHHVALPPDYLPSSALKMHAEDMSTLLTQHALQAAD
C7 ELMDAQQQQQ--HREHHVGLPPDYLPSSALKMHAEDMSTLLSQHAMQAAD
C8 ELMDAQQQQQ--HREHHVGLPPDYLPSAALKLHAEDMSTLLTQHALQAAD
C9 ELMDAQHQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAAD
******:*** ******.********:***:*********:***:****
C1 ARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------RELDR
C2 ARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------RELDR
C3 ARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPD--------RELDR
C4 ARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPE--------RELDR
C5 AREEHNDTKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------REQDR
C6 ARDEHNDAKQLQLDQTDNIDGRVKCFISKHDR-SHPDGIRELDRERERDR
C7 AREEHNDTKQLQLDQTDNIDGRVKCFNIKHDR--HPD--------REQDR
C8 ARDEHNDAKQLQLDQTDNIDGRVKCFNSKHEP--HPD--------REQDR
C9 AREDHNDSKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------REQDR
**::***:****************** **: **: ** **
C1 N-HREHDDDPGVIEEVVVDHVRE--MEAG-NEHDPEEMKEAA--YHATPP
C2 N-HREHDDDPGVMEEVIVDHGRE--MEAGNNEHDPEEMKEAA--YHATPP
C3 I-HREHDDDPGVIEEVVVDRGRE--MDAG-DEQEPEEMKEAT--YHATPP
C4 N-HREHDDDPGVIEEVVVEHGRR--MDAG-DEQDPEEMKEVA--YHATPP
C5 N-HREHDDPRGVVDEVVVDRDRDRDMDAE-EDQEPEEMEEA--PYHAAPP
C6 EREREHDDQGGIIDEVVVDHDRD--MDAEEDLESAEDIKEAA--YHAAPP
C7 NLKHDS----GVGEVLVVDRDRD--MDAEEEPE-PEDIEEAAAYHHATPP
C8 NREPDH----GVIEEVVVDRDRD--MDVEEDHE-PADIEESA--YHGTPP
C9 V-HREHDEQGQVVDEVVVDRDRDRDMDAE-EDHEPEDIEEAAMPYHNAPP
. : : : ::*:: * *:. : . . :::* :* :**
C1 KYRRAVVYAPPHPDEEAASGSGS--DIYVDGG-YNCEYKCKELNMRAIRC
C2 KYRRAVVYAPPHPDEEAASASGS--DVYVDGG-YNCEYKCKELNMRAIRC
C3 KYRRAVVYAPPHPDEEAASGSGS--DVYVDGG-YNCEYKCKELNMRAIRC
C4 KYRRAVVYAPPHPDEEAASGSGSGSDVYVDGG-YNCEYKCKELNMRAIRC
C5 KYRRAVVYAPPHPDEEAASGSASGSDIYVDGGGYNCEYKCKELNMRAIRC
C6 KYRRAVVYAPPHPDEEAASALGS--EIYVDSG-YNCEYKCKELNMRAIRC
C7 KYRRAVVYAPPHPDEEVASASGS--EIYVDSG-YNCEYKCKELNMRAIRC
C8 KYRRAVVYAPPHPDEEAASRSGS--EIYVDGG-YNCEYKCKELNMRAIRC
C9 KYRRAVVYAPPHPDEEAASGSGS--DIYVDGG-YNCEYKCKELNMRAIRC
****************.** .* ::***.* *****************
C1 SRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASNGAVQQ
C2 SRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASNGAVQQ
C3 SRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVVSN-QTYLASNGAVQQ
C4 SRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVASN-QAYLASNGAVQQ
C5 SRQQHLMSHYPPHHP-HHRALMDCPAEAAYSPPVASN-QAYLGSNGSVQQ
C6 SRQQHLMSHYPPHHPHHHRSLMDCPAEAAYSPP-VASNQAYMSSNGAVQQ
C7 SRQQHLMSHYPPHHP-HHRSMMECPAEAAYSPPVVASSPAYLTSNGAVQQ
C8 SRQQHLLSHYPPHHP-HHRSLMDCPAEAAYSPP-VANSQAYLTSNGAVQQ
C9 SRQQHLMSHYPPHHP-HHRSLMDCPAEAAYSPPVVNSQQAYLGSNG--SQ
*****::***.**** ***::::********** . . :*: *** .*
C1 LDLSTYH----GHANHQLHQHPPSATHP-----SHSQSSPHYPSASGAG-
C2 LDLSTYH----GHANHQLHQHPPSTPHP-----SHSQSSPHYPSASGAG-
C3 LDLSSYHS--HGHANHQHHQHPPPAPHP-----SHSQGSPHYPPAS--V-
C4 LDLSSYH----GHASHQHHQHPPSAPHPP----SHSQSSPHYPPASGAGV
C5 LDLSSYHG---HGSHHHHHPHHPPLAMATAPPPSHSQSSPHYPAASGSAT
C6 LDLSSYH----GHG-SHHHHHPSPLPMAPAPPPSLSQSSPHYPTAS----
C7 LDLSSYH----GTHHHHHHHHPAPLPLAPAPPSSHPQSSPHYPTASVSV-
C8 LDLASYH----GHGPHHNHHHPPPLPPAPAPP-SHSQSSPHYPAASGLG-
C9 LDLSSYHGGHHHHQHHHHHPHPPPLPAP--PPPSHSQSSPHYPTASGSS-
***::** : * * .. . . * .*.*****.**
C1 ---AGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGSTSS--
C2 ---AGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGSTSSS-
C3 ---AGAGSVSVSIAGSASGSAISAPASV-ATSAVSPQPSSSSTGSTSS--
C4 GVGAGSGSVSVAIAGSASGSAISAPASV-ATSAVSPQPSSSSTGSTSS--
C5 GSGSAAGSVSVSISGSASGSATSAPASV-ATSAVSPQPSSSSTGSTSTS-
C6 ----GSGSVSVSISGSGSGSAISAPASVSATSAVSPQPSSSSTGST-SS-
C7 ---SGSGSGSGSVSISGSVSAASAPPSV-ATSAISPQPSSSSSGSTGSS-
C8 ---LGSGSGSGSVSISGSGSAISAPASV-ANSAISPQPSSSSSGST-SS-
C9 GSVAVSITGSGSGSGSAAGSAISAPASV-ATSSVSPQPSSSSTGSTTTSS
: : * : : *.: ** ***.** *.*::********:*** :
C1 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C2 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C3 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C4 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C5 ----LAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C6 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C7 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C8 -AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
C9 SAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKIVSNRW
:*********************************************
C1 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C2 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C3 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C4 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C5 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHM--
C6 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMo-
C7 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C8 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
C9 HHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHYVHMoo
************************************************
C1 ooooooooooo--------
C2 ooooooooo----------
C3 ooooooooo----------
C4 o------------------
C5 -------------------
C6 -------------------
C7 oooooo-------------
C8 ooooooooooooooooooo
C9 o------------------
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 867 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 867 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PM/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0] 