--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Thu Nov 17 02:56:34 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/251/fru-PE/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -9768.33         -9781.96
2      -9768.25         -9783.42
--------------------------------------
TOTAL    -9768.29         -9782.93
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.942282    0.002418    0.843067    1.033239    0.939442   1353.56   1425.08    1.000
r(A<->C){all}   0.080061    0.000106    0.059524    0.099483    0.079656   1058.39   1111.64    1.002
r(A<->G){all}   0.194775    0.000281    0.161093    0.225988    0.194174    766.42    832.65    1.000
r(A<->T){all}   0.125639    0.000304    0.095012    0.162158    0.125162   1024.08   1071.26    1.000
r(C<->G){all}   0.046085    0.000043    0.033311    0.059172    0.045795   1106.45   1144.13    1.000
r(C<->T){all}   0.447369    0.000577    0.399118    0.491816    0.447882    823.32    868.03    1.000
r(G<->T){all}   0.106070    0.000156    0.083932    0.131857    0.105738   1025.32   1150.07    1.000
pi(A){all}      0.222377    0.000054    0.207923    0.236606    0.222440   1018.45   1138.91    1.000
pi(C){all}      0.316540    0.000060    0.301195    0.330788    0.316410   1100.31   1132.37    1.000
pi(G){all}      0.296616    0.000060    0.281411    0.311747    0.296643   1282.16   1302.54    1.000
pi(T){all}      0.164467    0.000035    0.153372    0.176370    0.164331   1037.67   1111.22    1.000
alpha{1,2}      0.145677    0.000149    0.121154    0.168774    0.144986   1205.81   1290.03    1.000
alpha{3}        3.885065    0.832919    2.378970    5.856960    3.799287   1330.44   1341.66    1.000
pinvar{all}     0.404687    0.000694    0.354975    0.456684    0.405658   1107.99   1185.69    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-8454.346516
Model 2: PositiveSelection	-8454.34669
Model 0: one-ratio	-8600.867317
Model 3: discrete	-8449.859714
Model 7: beta	-8455.801999
Model 8: beta&w>1	-8451.568541


Model 0 vs 1	293.04160200000115

Model 2 vs 1	3.480000013951212E-4

Model 8 vs 7	8.466915999997582

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PE)

            Pr(w>1)     post mean +- SE for w

   753 A      0.990*        3.106
   765 H      0.927         2.947

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PE)

            Pr(w>1)     post mean +- SE for w

   178 S      0.670         1.143 +- 0.529
   258 E      0.510         0.997 +- 0.536
   584 A      0.502         0.990 +- 0.535
   616 N      0.908         1.422 +- 0.251
   617 H      0.689         1.194 +- 0.473
   623 I      0.733         1.252 +- 0.423
   639 E      0.913         1.426 +- 0.246
   647 A      0.514         0.957 +- 0.586
   674 G      0.875         1.388 +- 0.303
   733 N      0.840         1.355 +- 0.342
   734 N      0.525         1.012 +- 0.535
   739 A      0.506         0.990 +- 0.540
   752 H      0.632         1.147 +- 0.478
   753 A      0.990**       1.493 +- 0.077
   754 N      0.907         1.421 +- 0.254
   763 A      0.784         1.293 +- 0.409
   764 T      0.562         1.015 +- 0.575
   765 H      0.983*        1.487 +- 0.101
   777 S      0.740         1.258 +- 0.422
   781 A      0.799         1.308 +- 0.396
   782 G      0.586         1.044 +- 0.567
   784 V      0.524         0.969 +- 0.584
   786 V      0.530         0.975 +- 0.584
   788 I      0.828         1.338 +- 0.368
   790 G      0.625         1.091 +- 0.551
   797 T      0.923         1.433 +- 0.238

>C1
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN
NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVIEEV
VVDHVREMEAGNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASGS
GSDIYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCP
AEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSATHPSH
SQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPSS
SSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCN
KIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFS
HYVHMooooooooooooo
>C2
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN
NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVMEEV
IVDHGREMEAGNNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASA
SGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDC
PAEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSTPHPS
HSQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPS
SSSTGSTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS
CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF
FSHYVHMooooooooooo
>C3
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNSSSNNNNSSNRERNNSGERERERERERERERDRDRELSTTPVE
QLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTS
ESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDA
QQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPDRELDRIHREHDDDPGVIE
EVVVDRGREMDAGDEQEPEEMKEATYHATPPKYRRAVVYAPPHPDEEAAS
GSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLID
CPAEAAYSPPVVSNQTYLASNGAVQQLDLSSYHSHGHANHQHHQHPPPAP
HPSHSQGSPHYPPASVAGAGSVSVSIAGSASGSAISAPASVATSAVSPQP
SSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS
CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF
FSHYVHMooooooooooo
>C4
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDRDRELSTT
PVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGG
STSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQEL
MDAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDE
HNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPERELDRNHREHDDDPGVI
EEVVVEHGRRMDAGDEQDPEEMKEVAYHATPPKYRRAVVYAPPHPDEEAA
SGSGSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRS
LIDCPAEAAYSPPVASNQAYLASNGAVQQLDLSSYHGHASHQHHQHPPSA
PHPPSHSQSSPHYPPASGAGVGVGAGSGSVSVAIAGSASGSAISAPASVA
TSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL
PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK
HADIKDRFFSHYVHMooo
>C5
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGMG
GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDRDRELSTTP
VDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREEH
NDTKQLQLDQTDNIDGRVKCFNSKHDRHPDREQDRNHREHDDPRGVVDEV
VVDRDRDRDMDAEEDQEPEEMEEAPYHAAPPKYRRAVVYAPPHPDEEAAS
GSASGSDIYVDGGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRA
LMDCPAEAAYSPPVASNQAYLGSNGSVQQLDLSSYHGHGSHHHHHPHHPP
LAMATAPPPSHSQSSPHYPAASGSATGSGSAAGSVSVSISGSASGSATSA
PASVATSAVSPQPSSSSTGSTSTSLAAAAAAAANRRDHNIDYSTLFVQLS
GTLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHC
KIKHADIKDRFFSHYVHM
>C6
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVALPPDYLPSSALKMHAEDMSTLLTQHALQAADARDEHN
DAKQLQLDQTDNIDGRVKCFISKHDRSHPDGIRELDRERERDREREREHD
DQGGIIDEVVVDHDRDMDAEEDLESAEDIKEAAYHAAPPKYRRAVVYAPP
HPDEEAASALGSEIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHH
PHHHRSLMDCPAEAAYSPPVASNQAYMSSNGAVQQLDLSSYHGHGSHHHH
HPSPLPMAPAPPPSLSQSSPHYPTASGSGSVSVSISGSGSGSAISAPASV
SATSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSG
TLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCK
IKHADIKDRFFSHYVHMo
>C7
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNNSSSNNNNNNRERNNSRERERERERERERERDRDRELSTTPV
EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVGLPPDYLPSSALKMHAEDMSTLLSQHAMQAADAREEHN
DTKQLQLDQTDNIDGRVKCFNIKHDRHPDREQDRNLKHDSGVGEVLVVDR
DRDMDAEEEPEPEDIEEAAAYHHATPPKYRRAVVYAPPHPDEEVASASGS
EIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSMMECPAE
AAYSPPVVASSPAYLTSNGAVQQLDLSSYHGTHHHHHHHHPAPLPLAPAP
PSSHPQSSPHYPTASVSVSGSGSGSGSVSISGSVSAASAPPSVATSAISP
QPSSSSSGSTGSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYR
CVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIK
DRFFSHYVHMoooooooo
>C8
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH
GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA
HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
YAGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAA
AAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVAAAVAA
AANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGN
NNNNNNNNNNNSSSNNNNNNRERNNSRERERERERERDRDRELSTTPVEQ
LSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSE
SEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDAQ
QQQQHREHHVGLPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHNDA
KQLQLDQTDNIDGRVKCFNSKHEPHPDREQDRNREPDHGVIEEVVVDRDR
DMDVEEDHEPADIEESAYHGTPPKYRRAVVYAPPHPDEEAASRSGSEIYV
DGGYNCEYKCKELNMRAIRCSRQQHLLSHYPPHHPHHRSLMDCPAEAAYS
PPVANSQAYLTSNGAVQQLDLASYHGHGPHHNHHHPPPLPPAPAPPSHSQ
SSPHYPAASGLGLGSGSGSGSVSISGSGSAISAPASVANSAISPQPSSSS
SGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
VHMooooooooooooooo
>C9
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNSSSNNNNRERNNSRERERERERERERDRDRELSTTPVDQLSS
SKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSESED
AGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELMDAQHQQ
QHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREDHNDSKQL
QLDQTDNIDGRVKCFNSKHDRHPDREQDRVHREHDEQGQVVDEVVVDRDR
DRDMDAEEDHEPEDIEEAAMPYHNAPPKYRRAVVYAPPHPDEEAASGSGS
DIYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLMDCPAE
AAYSPPVVNSQQAYLGSNGSQLDLSSYHGGHHHHQHHHHHPHPPPLPAPP
PPSHSQSSPHYPTASGSSGSVAVSITGSGSGSGSAAGSAISAPASVATSS
VSPQPSSSSTGSTTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL
PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK
HADIKDRFFSHYVHMooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=1018 

C1              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C2              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C3              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH
C4              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C5              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
C6              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH
C7              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH
C8              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH
C9              MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
                ************************************.***:***.*:***

C1              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C2              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C3              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPR
C4              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C5              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR
C6              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPR
C7              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C8              GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C9              GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR
                **      ************************************* :***

C1              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C2              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C3              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C4              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C5              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C6              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C7              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C8              YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA
C9              YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
                ********************:*****************************

C1              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C2              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C3              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C4              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C5              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV
C6              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C7              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV
C8              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C9              HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
                *********************************:****************

C1              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C2              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C3              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C4              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C5              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C6              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C7              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C8              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C9              GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
                **************************************************

C1              YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C2              YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C3              YTGGLGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C4              YTGGLGGAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAA
C5              YTGGMGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C6              YTGGLGGSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C7              YTGGLGGAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAA
C8              YAG---GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERS--SA
C9              YTGGLGGSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
                *:*   *:********:**::*************************  :*

C1              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C2              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C3              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C4              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C5              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C6              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C7              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C8              AAAAAAAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVA
C9              AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
                ****************************:*********************

C1              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C2              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C3              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C4              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C5              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C6              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C7              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C8              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C9              AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
                **************************************************

C1              SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR
C2              SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR
C3              SSTG---NNNNNNNNNSSSNNNNSS-NRERNNSGERERERERERERERDR
C4              SSTG-NNNNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDR
C5              SSTG--NNNNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDR
C6              SSTGNNNNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERER--ERDR
C7              SSTGNNNNN--NNNNNN-SSSNNNNNNRERNNSRERERERERERERERDR
C8              SSTGNNNNN--NNNNNNNSSSNNNNNNRERNNSRERERERERE----RDR
C9              SSTG--NNNNNNNNNN----SSSNNNNRERNNSRERERERERERER--DR
                ****   **  ****.    ..... ****:** *********     **

C1              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C2              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C3              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C4              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C5              DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C6              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C7              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C8              DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C9              DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
                *********:****************************************

C1              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C2              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C3              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C4              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C5              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS
C6              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGG-NVGAASALSGLSQS
C7              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C8              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C9              PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS
                *********************************** ***********.**

C1              LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C2              LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C3              LSIKQELMDAQQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C4              LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C5              LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA
C6              LSIKQELMDAQQQQQ--HREHHVALPPDYLPSSALKMHAEDMSTLLTQHA
C7              LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSSALKMHAEDMSTLLSQHA
C8              LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSAALKLHAEDMSTLLTQHA
C9              LSIKQELMDAQHQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA
                ***********:***  ******.********:***:*********:***

C1              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------
C2              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------
C3              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPD--------
C4              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPE--------
C5              LQAADAREEHNDTKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------
C6              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFISKHDR-SHPDGIRELDRE
C7              MQAADAREEHNDTKQLQLDQTDNIDGRVKCFNIKHDR--HPD--------
C8              LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNSKHEP--HPD--------
C9              LQAADAREDHNDSKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------
                :******::***:******************  **:   **:        

C1              RELDRN-HREHDDDPGVIEEVVVDHVRE--MEAG-NEHDPEEMKEAA--Y
C2              RELDRN-HREHDDDPGVMEEVIVDHGRE--MEAGNNEHDPEEMKEAA--Y
C3              RELDRI-HREHDDDPGVIEEVVVDRGRE--MDAG-DEQEPEEMKEAT--Y
C4              RELDRN-HREHDDDPGVIEEVVVEHGRR--MDAG-DEQDPEEMKEVA--Y
C5              REQDRN-HREHDDPRGVVDEVVVDRDRDRDMDAE-EDQEPEEMEEAP--Y
C6              RERDREREREHDDQGGIIDEVVVDHDRD--MDAEEDLESAEDIKEAA--Y
C7              REQDRNLKHDS----GVGEVLVVDRDRD--MDAEEEPE-PEDIEEAAAYH
C8              REQDRNREPDH----GVIEEVVVDRDRD--MDVEEDHE-PADIEESA--Y
C9              REQDRV-HREHDEQGQVVDEVVVDRDRDRDMDAE-EDHEPEDIEEAAMPY
                ** **  . :      : : ::*:: *   *:.  : . . :::* .  :

C1              HATPPKYRRAVVYAPPHPDEEAASGSGS--DIYVDGG-YNCEYKCKELNM
C2              HATPPKYRRAVVYAPPHPDEEAASASGS--DVYVDGG-YNCEYKCKELNM
C3              HATPPKYRRAVVYAPPHPDEEAASGSGS--DVYVDGG-YNCEYKCKELNM
C4              HATPPKYRRAVVYAPPHPDEEAASGSGSGSDVYVDGG-YNCEYKCKELNM
C5              HAAPPKYRRAVVYAPPHPDEEAASGSASGSDIYVDGGGYNCEYKCKELNM
C6              HAAPPKYRRAVVYAPPHPDEEAASALGS--EIYVDSG-YNCEYKCKELNM
C7              HATPPKYRRAVVYAPPHPDEEVASASGS--EIYVDSG-YNCEYKCKELNM
C8              HGTPPKYRRAVVYAPPHPDEEAASRSGS--EIYVDGG-YNCEYKCKELNM
C9              HNAPPKYRRAVVYAPPHPDEEAASG--SGSDIYVDGG-YNCEYKCKELNM
                * :******************.**   *  ::***.* ************

C1              RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN
C2              RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN
C3              RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVVSN-QTYLASN
C4              RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVASN-QAYLASN
C5              RAIRCSRQQHLMSHYPPHHP-HHRALMDCPAEAAYSPPVASN-QAYLGSN
C6              RAIRCSRQQHLMSHYPPHHPHHHRSLMDCPAEAAYSPP-VASNQAYMSSN
C7              RAIRCSRQQHLMSHYPPHHP-HHRSMMECPAEAAYSPPVVASSPAYLTSN
C8              RAIRCSRQQHLLSHYPPHHP-HHRSLMDCPAEAAYSPP-VANSQAYLTSN
C9              RAIRCSRQQHLMSHYPPHHP-HHRSLMDCPAEAAYSPPVVNSQQAYLGSN
                **********::***.**** ***::::********** . .  :*: **

C1              GAVQQLDLSTYH----GHANHQLHQHPPSATHP-----SHSQSSPHYPSA
C2              GAVQQLDLSTYH----GHANHQLHQHPPSTPHP-----SHSQSSPHYPSA
C3              GAVQQLDLSSYHS--HGHANHQHHQHPPPAPHP-----SHSQGSPHYPPA
C4              GAVQQLDLSSYH----GHASHQHHQHPPSAPHPP----SHSQSSPHYPPA
C5              GSVQQLDLSSYHG---HGSHHHHHPHHPPLAMATAPPPSHSQSSPHYPAA
C6              GAVQQLDLSSYHG----HGSHH-HHHPSPLPMAPAPPPSLSQSSPHYPTA
C7              GAVQQLDLSSYHG----THHHHHHHHPAPLPLAPAPPSSHPQSSPHYPTA
C8              GAVQQLDLASYHG----HGPHHNHHHPPPLPPAPAPP-SHSQSSPHYPAA
C9              G--SQLDLSSYHGGHHHHQHHHHHPHPPPLPAP--PPPSHSQSSPHYPTA
                *  .****::**        *: * * .. . .     * .*.*****.*

C1              SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C2              SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C3              SVA------GAGSVSVSIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS
C4              SGAGVGVGAGSGSVSVAIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS
C5              SGSATGSGSAAGSVSVSISGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C6              S--------GSGSVSVSISGSGSGSAISAPASVSATSAVSPQPSSSSTGS
C7              SVS----VSGSGSGSGSVSISGSVSAASAPPSV-ATSAISPQPSSSSSGS
C8              SGL----GLGSGSGSGSVSISGSGSAISAPASV-ANSAISPQPSSSSSGS
C9              SGSS-GSVAVSITGSGSGSGSAAGSAISAPASV-ATSSVSPQPSSSSTGS
                *         : : * : : *.: ** ***.** *.*::********:**

C1              TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C2              TSSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C3              TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C4              TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C5              TSTS-----LAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C6              T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C7              TGSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C8              T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C9              TTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
                * :      :****************************************

C1              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C2              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C3              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C4              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C5              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C6              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C7              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C8              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C9              VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
                **************************************************

C1              VHMooooooooooooo--
C2              VHMooooooooooo----
C3              VHMooooooooooo----
C4              VHMooo------------
C5              VHM---------------
C6              VHMo--------------
C7              VHMoooooooo-------
C8              VHMooooooooooooooo
C9              VHMooo------------
                ***               




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length  968 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length  968 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump