--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Thu Nov 17 02:56:34 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/251/fru-PE/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -9768.33 -9781.96 2 -9768.25 -9783.42 -------------------------------------- TOTAL -9768.29 -9782.93 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.942282 0.002418 0.843067 1.033239 0.939442 1353.56 1425.08 1.000 r(A<->C){all} 0.080061 0.000106 0.059524 0.099483 0.079656 1058.39 1111.64 1.002 r(A<->G){all} 0.194775 0.000281 0.161093 0.225988 0.194174 766.42 832.65 1.000 r(A<->T){all} 0.125639 0.000304 0.095012 0.162158 0.125162 1024.08 1071.26 1.000 r(C<->G){all} 0.046085 0.000043 0.033311 0.059172 0.045795 1106.45 1144.13 1.000 r(C<->T){all} 0.447369 0.000577 0.399118 0.491816 0.447882 823.32 868.03 1.000 r(G<->T){all} 0.106070 0.000156 0.083932 0.131857 0.105738 1025.32 1150.07 1.000 pi(A){all} 0.222377 0.000054 0.207923 0.236606 0.222440 1018.45 1138.91 1.000 pi(C){all} 0.316540 0.000060 0.301195 0.330788 0.316410 1100.31 1132.37 1.000 pi(G){all} 0.296616 0.000060 0.281411 0.311747 0.296643 1282.16 1302.54 1.000 pi(T){all} 0.164467 0.000035 0.153372 0.176370 0.164331 1037.67 1111.22 1.000 alpha{1,2} 0.145677 0.000149 0.121154 0.168774 0.144986 1205.81 1290.03 1.000 alpha{3} 3.885065 0.832919 2.378970 5.856960 3.799287 1330.44 1341.66 1.000 pinvar{all} 0.404687 0.000694 0.354975 0.456684 0.405658 1107.99 1185.69 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -8454.346516 Model 2: PositiveSelection -8454.34669 Model 0: one-ratio -8600.867317 Model 3: discrete -8449.859714 Model 7: beta -8455.801999 Model 8: beta&w>1 -8451.568541 Model 0 vs 1 293.04160200000115 Model 2 vs 1 3.480000013951212E-4 Model 8 vs 7 8.466915999997582 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_fru-PE) Pr(w>1) post mean +- SE for w 753 A 0.990* 3.106 765 H 0.927 2.947 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_fru-PE) Pr(w>1) post mean +- SE for w 178 S 0.670 1.143 +- 0.529 258 E 0.510 0.997 +- 0.536 584 A 0.502 0.990 +- 0.535 616 N 0.908 1.422 +- 0.251 617 H 0.689 1.194 +- 0.473 623 I 0.733 1.252 +- 0.423 639 E 0.913 1.426 +- 0.246 647 A 0.514 0.957 +- 0.586 674 G 0.875 1.388 +- 0.303 733 N 0.840 1.355 +- 0.342 734 N 0.525 1.012 +- 0.535 739 A 0.506 0.990 +- 0.540 752 H 0.632 1.147 +- 0.478 753 A 0.990** 1.493 +- 0.077 754 N 0.907 1.421 +- 0.254 763 A 0.784 1.293 +- 0.409 764 T 0.562 1.015 +- 0.575 765 H 0.983* 1.487 +- 0.101 777 S 0.740 1.258 +- 0.422 781 A 0.799 1.308 +- 0.396 782 G 0.586 1.044 +- 0.567 784 V 0.524 0.969 +- 0.584 786 V 0.530 0.975 +- 0.584 788 I 0.828 1.338 +- 0.368 790 G 0.625 1.091 +- 0.551 797 T 0.923 1.433 +- 0.238
>C1 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVIEEV VVDHVREMEAGNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASGS GSDIYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCP AEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSATHPSH SQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPSS SSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCN KIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFS HYVHMooooooooooooo >C2 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVMEEV IVDHGREMEAGNNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASA SGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDC PAEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSTPHPS HSQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPS SSSTGSTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF FSHYVHMooooooooooo >C3 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNNNNNSSSNNNNSSNRERNNSGERERERERERERERDRDRELSTTPVE QLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTS ESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDA QQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH NDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPDRELDRIHREHDDDPGVIE EVVVDRGREMDAGDEQEPEEMKEATYHATPPKYRRAVVYAPPHPDEEAAS GSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLID CPAEAAYSPPVVSNQTYLASNGAVQQLDLSSYHSHGHANHQHHQHPPPAP HPSHSQGSPHYPPASVAGAGSVSVSIAGSASGSAISAPASVATSAVSPQP SSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF FSHYVHMooooooooooo >C4 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDRDRELSTT PVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGG STSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQEL MDAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDE HNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPERELDRNHREHDDDPGVI EEVVVEHGRRMDAGDEQDPEEMKEVAYHATPPKYRRAVVYAPPHPDEEAA SGSGSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRS LIDCPAEAAYSPPVASNQAYLASNGAVQQLDLSSYHGHASHQHHQHPPSA PHPPSHSQSSPHYPPASGAGVGVGAGSGSVSVAIAGSASGSAISAPASVA TSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK HADIKDRFFSHYVHMooo >C5 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGMG GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDRDRELSTTP VDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELM DAQQQQQHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREEH NDTKQLQLDQTDNIDGRVKCFNSKHDRHPDREQDRNHREHDDPRGVVDEV VVDRDRDRDMDAEEDQEPEEMEEAPYHAAPPKYRRAVVYAPPHPDEEAAS GSASGSDIYVDGGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRA LMDCPAEAAYSPPVASNQAYLGSNGSVQQLDLSSYHGHGSHHHHHPHHPP LAMATAPPPSHSQSSPHYPAASGSATGSGSAAGSVSVSISGSASGSATSA PASVATSAVSPQPSSSSTGSTSTSLAAAAAAAANRRDHNIDYSTLFVQLS GTLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHC KIKHADIKDRFFSHYVHM >C6 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERERERDRDRELSTTP VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS TSESEDAGGRHDSPLSMTTSVHLGGGGNVGAASALSGLSQSLSIKQELMD AQQQQQHREHHVALPPDYLPSSALKMHAEDMSTLLTQHALQAADARDEHN DAKQLQLDQTDNIDGRVKCFISKHDRSHPDGIRELDRERERDREREREHD DQGGIIDEVVVDHDRDMDAEEDLESAEDIKEAAYHAAPPKYRRAVVYAPP HPDEEAASALGSEIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHH PHHHRSLMDCPAEAAYSPPVASNQAYMSSNGAVQQLDLSSYHGHGSHHHH HPSPLPMAPAPPPSLSQSSPHYPTASGSGSVSVSISGSGSGSAISAPASV SATSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSG TLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCK IKHADIKDRFFSHYVHMo >C7 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNNNNNNNSSSNNNNNNRERNNSRERERERERERERERDRDRELSTTPV EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMD AQQQQQHREHHVGLPPDYLPSSALKMHAEDMSTLLSQHAMQAADAREEHN DTKQLQLDQTDNIDGRVKCFNIKHDRHPDREQDRNLKHDSGVGEVLVVDR DRDMDAEEEPEPEDIEEAAAYHHATPPKYRRAVVYAPPHPDEEVASASGS EIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSMMECPAE AAYSPPVVASSPAYLTSNGAVQQLDLSSYHGTHHHHHHHHPAPLPLAPAP PSSHPQSSPHYPTASVSVSGSGSGSGSVSISGSVSAASAPPSVATSAISP QPSSSSSGSTGSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYR CVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIK DRFFSHYVHMoooooooo >C8 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN YAGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAA AAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVAAAVAA AANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGN NNNNNNNNNNNSSSNNNNNNRERNNSRERERERERERDRDRELSTTPVEQ LSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSE SEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDAQ QQQQHREHHVGLPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHNDA KQLQLDQTDNIDGRVKCFNSKHEPHPDREQDRNREPDHGVIEEVVVDRDR DMDVEEDHEPADIEESAYHGTPPKYRRAVVYAPPHPDEEAASRSGSEIYV DGGYNCEYKCKELNMRAIRCSRQQHLLSHYPPHHPHHRSLMDCPAEAAYS PPVANSQAYLTSNGAVQQLDLASYHGHGPHHNHHHPPPLPPAPAPPSHSQ SSPHYPAASGLGLGSGSGSGSVSISGSGSAISAPASVANSAISPQPSSSS SGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY VHMooooooooooooooo >C9 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG GSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN NNNNNNNNSSSNNNNRERNNSRERERERERERERDRDRELSTTPVDQLSS SKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSESED AGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELMDAQHQQ QHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREDHNDSKQL QLDQTDNIDGRVKCFNSKHDRHPDREQDRVHREHDEQGQVVDEVVVDRDR DRDMDAEEDHEPEDIEEAAMPYHNAPPKYRRAVVYAPPHPDEEAASGSGS DIYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLMDCPAE AAYSPPVVNSQQAYLGSNGSQLDLSSYHGGHHHHQHHHHHPHPPPLPAPP PPSHSQSSPHYPTASGSSGSVAVSITGSGSGSGSAAGSAISAPASVATSS VSPQPSSSSTGSTTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK HADIKDRFFSHYVHMooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=1018 C1 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH C2 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH C3 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH C4 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH C5 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH C6 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH C7 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH C8 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH C9 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH ************************************.***:***.*:*** C1 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR C2 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR C3 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPR C4 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR C5 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR C6 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPR C7 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR C8 GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR C9 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR ** ************************************* :*** C1 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C2 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C3 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C4 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C5 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C6 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C7 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA C8 YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA C9 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA ********************:***************************** C1 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C2 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C3 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C4 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C5 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV C6 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C7 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV C8 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV C9 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV *********************************:**************** C1 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C2 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C3 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C4 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C5 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C6 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C7 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C8 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN C9 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN ************************************************** C1 YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA C2 YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA C3 YTGGLGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA C4 YTGGLGGAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAA C5 YTGGMGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA C6 YTGGLGGSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA C7 YTGGLGGAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAA C8 YAG---GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERS--SA C9 YTGGLGGSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA *:* *:********:**::************************* :* C1 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C2 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C3 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C4 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C5 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C6 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C7 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA C8 AAAAAAAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVA C9 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA ****************************:********************* C1 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C2 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C3 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C4 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C5 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C6 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C7 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C8 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS C9 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS ************************************************** C1 SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR C2 SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR C3 SSTG---NNNNNNNNNSSSNNNNSS-NRERNNSGERERERERERERERDR C4 SSTG-NNNNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDR C5 SSTG--NNNNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDR C6 SSTGNNNNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERER--ERDR C7 SSTGNNNNN--NNNNNN-SSSNNNNNNRERNNSRERERERERERERERDR C8 SSTGNNNNN--NNNNNNNSSSNNNNNNRERNNSRERERERERE----RDR C9 SSTG--NNNNNNNNNN----SSSNNNNRERNNSRERERERERERER--DR **** ** ****. ..... ****:** ********* ** C1 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C2 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C3 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C4 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C5 DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C6 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C7 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C8 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS C9 DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS *********:**************************************** C1 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C2 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C3 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C4 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C5 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS C6 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGG-NVGAASALSGLSQS C7 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C8 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS C9 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS *********************************** ***********.** C1 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA C2 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA C3 LSIKQELMDAQQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHA C4 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA C5 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA C6 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSSALKMHAEDMSTLLTQHA C7 LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSSALKMHAEDMSTLLSQHA C8 LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSAALKLHAEDMSTLLTQHA C9 LSIKQELMDAQHQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA ***********:*** ******.********:***:*********:*** C1 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD-------- C2 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD-------- C3 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPD-------- C4 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPE-------- C5 LQAADAREEHNDTKQLQLDQTDNIDGRVKCFNSKHDR--HPD-------- C6 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFISKHDR-SHPDGIRELDRE C7 MQAADAREEHNDTKQLQLDQTDNIDGRVKCFNIKHDR--HPD-------- C8 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNSKHEP--HPD-------- C9 LQAADAREDHNDSKQLQLDQTDNIDGRVKCFNSKHDR--HPD-------- :******::***:****************** **: **: C1 RELDRN-HREHDDDPGVIEEVVVDHVRE--MEAG-NEHDPEEMKEAA--Y C2 RELDRN-HREHDDDPGVMEEVIVDHGRE--MEAGNNEHDPEEMKEAA--Y C3 RELDRI-HREHDDDPGVIEEVVVDRGRE--MDAG-DEQEPEEMKEAT--Y C4 RELDRN-HREHDDDPGVIEEVVVEHGRR--MDAG-DEQDPEEMKEVA--Y C5 REQDRN-HREHDDPRGVVDEVVVDRDRDRDMDAE-EDQEPEEMEEAP--Y C6 RERDREREREHDDQGGIIDEVVVDHDRD--MDAEEDLESAEDIKEAA--Y C7 REQDRNLKHDS----GVGEVLVVDRDRD--MDAEEEPE-PEDIEEAAAYH C8 REQDRNREPDH----GVIEEVVVDRDRD--MDVEEDHE-PADIEESA--Y C9 REQDRV-HREHDEQGQVVDEVVVDRDRDRDMDAE-EDHEPEDIEEAAMPY ** ** . : : : ::*:: * *:. : . . :::* . : C1 HATPPKYRRAVVYAPPHPDEEAASGSGS--DIYVDGG-YNCEYKCKELNM C2 HATPPKYRRAVVYAPPHPDEEAASASGS--DVYVDGG-YNCEYKCKELNM C3 HATPPKYRRAVVYAPPHPDEEAASGSGS--DVYVDGG-YNCEYKCKELNM C4 HATPPKYRRAVVYAPPHPDEEAASGSGSGSDVYVDGG-YNCEYKCKELNM C5 HAAPPKYRRAVVYAPPHPDEEAASGSASGSDIYVDGGGYNCEYKCKELNM C6 HAAPPKYRRAVVYAPPHPDEEAASALGS--EIYVDSG-YNCEYKCKELNM C7 HATPPKYRRAVVYAPPHPDEEVASASGS--EIYVDSG-YNCEYKCKELNM C8 HGTPPKYRRAVVYAPPHPDEEAASRSGS--EIYVDGG-YNCEYKCKELNM C9 HNAPPKYRRAVVYAPPHPDEEAASG--SGSDIYVDGG-YNCEYKCKELNM * :******************.** * ::***.* ************ C1 RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN C2 RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN C3 RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVVSN-QTYLASN C4 RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVASN-QAYLASN C5 RAIRCSRQQHLMSHYPPHHP-HHRALMDCPAEAAYSPPVASN-QAYLGSN C6 RAIRCSRQQHLMSHYPPHHPHHHRSLMDCPAEAAYSPP-VASNQAYMSSN C7 RAIRCSRQQHLMSHYPPHHP-HHRSMMECPAEAAYSPPVVASSPAYLTSN C8 RAIRCSRQQHLLSHYPPHHP-HHRSLMDCPAEAAYSPP-VANSQAYLTSN C9 RAIRCSRQQHLMSHYPPHHP-HHRSLMDCPAEAAYSPPVVNSQQAYLGSN **********::***.**** ***::::********** . . :*: ** C1 GAVQQLDLSTYH----GHANHQLHQHPPSATHP-----SHSQSSPHYPSA C2 GAVQQLDLSTYH----GHANHQLHQHPPSTPHP-----SHSQSSPHYPSA C3 GAVQQLDLSSYHS--HGHANHQHHQHPPPAPHP-----SHSQGSPHYPPA C4 GAVQQLDLSSYH----GHASHQHHQHPPSAPHPP----SHSQSSPHYPPA C5 GSVQQLDLSSYHG---HGSHHHHHPHHPPLAMATAPPPSHSQSSPHYPAA C6 GAVQQLDLSSYHG----HGSHH-HHHPSPLPMAPAPPPSLSQSSPHYPTA C7 GAVQQLDLSSYHG----THHHHHHHHPAPLPLAPAPPSSHPQSSPHYPTA C8 GAVQQLDLASYHG----HGPHHNHHHPPPLPPAPAPP-SHSQSSPHYPAA C9 G--SQLDLSSYHGGHHHHQHHHHHPHPPPLPAP--PPPSHSQSSPHYPTA * .****::** *: * * .. . . * .*.*****.* C1 SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS C2 SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS C3 SVA------GAGSVSVSIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS C4 SGAGVGVGAGSGSVSVAIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS C5 SGSATGSGSAAGSVSVSISGSASGSATSAPASV-ATSAVSPQPSSSSTGS C6 S--------GSGSVSVSISGSGSGSAISAPASVSATSAVSPQPSSSSTGS C7 SVS----VSGSGSGSGSVSISGSVSAASAPPSV-ATSAISPQPSSSSSGS C8 SGL----GLGSGSGSGSVSISGSGSAISAPASV-ANSAISPQPSSSSSGS C9 SGSS-GSVAVSITGSGSGSGSAAGSAISAPASV-ATSSVSPQPSSSSTGS * : : * : : *.: ** ***.** *.*::********:** C1 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C2 TSSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C3 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C4 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C5 TSTS-----LAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C6 T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C7 TGSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C8 T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI C9 TTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI * : :**************************************** C1 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C2 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C3 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C4 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C5 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C6 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C7 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C8 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY C9 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY ************************************************** C1 VHMooooooooooooo-- C2 VHMooooooooooo---- C3 VHMooooooooooo---- C4 VHMooo------------ C5 VHM--------------- C6 VHMo-------------- C7 VHMoooooooo------- C8 VHMooooooooooooooo C9 VHMooo------------ *** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump