--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Thu Nov 17 02:56:34 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/251/fru-PE/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -9768.33 -9781.96
2 -9768.25 -9783.42
--------------------------------------
TOTAL -9768.29 -9782.93
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/251/fru-PE/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.942282 0.002418 0.843067 1.033239 0.939442 1353.56 1425.08 1.000
r(A<->C){all} 0.080061 0.000106 0.059524 0.099483 0.079656 1058.39 1111.64 1.002
r(A<->G){all} 0.194775 0.000281 0.161093 0.225988 0.194174 766.42 832.65 1.000
r(A<->T){all} 0.125639 0.000304 0.095012 0.162158 0.125162 1024.08 1071.26 1.000
r(C<->G){all} 0.046085 0.000043 0.033311 0.059172 0.045795 1106.45 1144.13 1.000
r(C<->T){all} 0.447369 0.000577 0.399118 0.491816 0.447882 823.32 868.03 1.000
r(G<->T){all} 0.106070 0.000156 0.083932 0.131857 0.105738 1025.32 1150.07 1.000
pi(A){all} 0.222377 0.000054 0.207923 0.236606 0.222440 1018.45 1138.91 1.000
pi(C){all} 0.316540 0.000060 0.301195 0.330788 0.316410 1100.31 1132.37 1.000
pi(G){all} 0.296616 0.000060 0.281411 0.311747 0.296643 1282.16 1302.54 1.000
pi(T){all} 0.164467 0.000035 0.153372 0.176370 0.164331 1037.67 1111.22 1.000
alpha{1,2} 0.145677 0.000149 0.121154 0.168774 0.144986 1205.81 1290.03 1.000
alpha{3} 3.885065 0.832919 2.378970 5.856960 3.799287 1330.44 1341.66 1.000
pinvar{all} 0.404687 0.000694 0.354975 0.456684 0.405658 1107.99 1185.69 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -8454.346516
Model 2: PositiveSelection -8454.34669
Model 0: one-ratio -8600.867317
Model 3: discrete -8449.859714
Model 7: beta -8455.801999
Model 8: beta&w>1 -8451.568541
Model 0 vs 1 293.04160200000115
Model 2 vs 1 3.480000013951212E-4
Model 8 vs 7 8.466915999997582
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PE)
Pr(w>1) post mean +- SE for w
753 A 0.990* 3.106
765 H 0.927 2.947
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_fru-PE)
Pr(w>1) post mean +- SE for w
178 S 0.670 1.143 +- 0.529
258 E 0.510 0.997 +- 0.536
584 A 0.502 0.990 +- 0.535
616 N 0.908 1.422 +- 0.251
617 H 0.689 1.194 +- 0.473
623 I 0.733 1.252 +- 0.423
639 E 0.913 1.426 +- 0.246
647 A 0.514 0.957 +- 0.586
674 G 0.875 1.388 +- 0.303
733 N 0.840 1.355 +- 0.342
734 N 0.525 1.012 +- 0.535
739 A 0.506 0.990 +- 0.540
752 H 0.632 1.147 +- 0.478
753 A 0.990** 1.493 +- 0.077
754 N 0.907 1.421 +- 0.254
763 A 0.784 1.293 +- 0.409
764 T 0.562 1.015 +- 0.575
765 H 0.983* 1.487 +- 0.101
777 S 0.740 1.258 +- 0.422
781 A 0.799 1.308 +- 0.396
782 G 0.586 1.044 +- 0.567
784 V 0.524 0.969 +- 0.584
786 V 0.530 0.975 +- 0.584
788 I 0.828 1.338 +- 0.368
790 G 0.625 1.091 +- 0.551
797 T 0.923 1.433 +- 0.238
>C1
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN
NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVIEEV
VVDHVREMEAGNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASGS
GSDIYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDCP
AEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSATHPSH
SQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPSS
SSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCN
KIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFS
HYVHMooooooooooooo
>C2
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGGN
NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDRHPDRELDRNHREHDDDPGVMEEV
IVDHGREMEAGNNEHDPEEMKEAAYHATPPKYRRAVVYAPPHPDEEAASA
SGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHMMSHYSPHHPHHRSLIDC
PAEAAYSPPVANNQAYLASNGAVQQLDLSTYHGHANHQLHQHPPSTPHPS
HSQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATSAVSPQPS
SSSTGSTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS
CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF
FSHYVHMooooooooooo
>C3
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNSSSNNNNSSNRERNNSGERERERERERERERDRDRELSTTPVE
QLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTS
ESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDA
QQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEH
NDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPDRELDRIHREHDDDPGVIE
EVVVDRGREMDAGDEQEPEEMKEATYHATPPKYRRAVVYAPPHPDEEAAS
GSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLID
CPAEAAYSPPVVSNQTYLASNGAVQQLDLSSYHSHGHANHQHHQHPPPAP
HPSHSQGSPHYPPASVAGAGSVSVSIAGSASGSAISAPASVATSAVSPQP
SSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVS
CNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRF
FSHYVHMooooooooooo
>C4
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDRDRELSTT
PVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGG
STSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQEL
MDAQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHALQAADARDE
HNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPERELDRNHREHDDDPGVI
EEVVVEHGRRMDAGDEQDPEEMKEVAYHATPPKYRRAVVYAPPHPDEEAA
SGSGSGSDVYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRS
LIDCPAEAAYSPPVASNQAYLASNGAVQQLDLSSYHGHASHQHHQHPPSA
PHPPSHSQSSPHYPPASGAGVGVGAGSGSVSVAIAGSASGSAISAPASVA
TSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL
PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK
HADIKDRFFSHYVHMooo
>C5
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGMG
GAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDRDRELSTTP
VDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELM
DAQQQQQHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREEH
NDTKQLQLDQTDNIDGRVKCFNSKHDRHPDREQDRNHREHDDPRGVVDEV
VVDRDRDRDMDAEEDQEPEEMEEAPYHAAPPKYRRAVVYAPPHPDEEAAS
GSASGSDIYVDGGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRA
LMDCPAEAAYSPPVASNQAYLGSNGSVQQLDLSSYHGHGSHHHHHPHHPP
LAMATAPPPSHSQSSPHYPAASGSATGSGSAAGSVSVSISGSASGSATSA
PASVATSAVSPQPSSSSTGSTSTSLAAAAAAAANRRDHNIDYSTLFVQLS
GTLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHC
KIKHADIKDRFFSHYVHM
>C6
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERERERDRDRELSTTP
VEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGS
TSESEDAGGRHDSPLSMTTSVHLGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVALPPDYLPSSALKMHAEDMSTLLTQHALQAADARDEHN
DAKQLQLDQTDNIDGRVKCFISKHDRSHPDGIRELDRERERDREREREHD
DQGGIIDEVVVDHDRDMDAEEDLESAEDIKEAAYHAAPPKYRRAVVYAPP
HPDEEAASALGSEIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHH
PHHHRSLMDCPAEAAYSPPVASNQAYMSSNGAVQQLDLSSYHGHGSHHHH
HPSPLPMAPAPPPSLSQSSPHYPTASGSGSVSVSISGSGSGSAISAPASV
SATSAVSPQPSSSSTGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSG
TLPTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCK
IKHADIKDRFFSHYVHMo
>C7
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNNSSSNNNNNNRERNNSRERERERERERERERDRDRELSTTPV
EQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGST
SESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMD
AQQQQQHREHHVGLPPDYLPSSALKMHAEDMSTLLSQHAMQAADAREEHN
DTKQLQLDQTDNIDGRVKCFNIKHDRHPDREQDRNLKHDSGVGEVLVVDR
DRDMDAEEEPEPEDIEEAAAYHHATPPKYRRAVVYAPPHPDEEVASASGS
EIYVDSGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSMMECPAE
AAYSPPVVASSPAYLTSNGAVQQLDLSSYHGTHHHHHHHHPAPLPLAPAP
PSSHPQSSPHYPTASVSVSGSGSGSGSVSISGSVSAASAPPSVATSAISP
QPSSSSSGSTGSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYR
CVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIK
DRFFSHYVHMoooooooo
>C8
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH
GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA
HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
YAGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAA
AAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVAAAVAA
AANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGN
NNNNNNNNNNNSSSNNNNNNRERNNSRERERERERERDRDRELSTTPVEQ
LSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSE
SEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQSLSIKQELMDAQ
QQQQHREHHVGLPPDYLPSAALKLHAEDMSTLLTQHALQAADARDEHNDA
KQLQLDQTDNIDGRVKCFNSKHEPHPDREQDRNREPDHGVIEEVVVDRDR
DMDVEEDHEPADIEESAYHGTPPKYRRAVVYAPPHPDEEAASRSGSEIYV
DGGYNCEYKCKELNMRAIRCSRQQHLLSHYPPHHPHHRSLMDCPAEAAYS
PPVANSQAYLTSNGAVQQLDLASYHGHGPHHNHHHPPPLPPAPAPPSHSQ
SSPHYPAASGLGLGSGSGSGSVSISGSGSAISAPASVANSAISPQPSSSS
SGSTSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
VHMooooooooooooooo
>C9
MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
GHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPRYNTDQG
AMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILS
ACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLP
MFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSNYTGGLG
GSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAAAAAAAA
AAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVAAAVAAA
ANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNSSSTGNN
NNNNNNNNSSSNNNNRERNNSRERERERERERERDRDRELSTTPVDQLSS
SKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSSPVPKTGGSTSESED
AGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQSLSIKQELMDAQHQQ
QHREHHVALPPDYLPSAALKMHAEDMSTLLTQHALQAADAREDHNDSKQL
QLDQTDNIDGRVKCFNSKHDRHPDREQDRVHREHDEQGQVVDEVVVDRDR
DRDMDAEEDHEPEDIEEAAMPYHNAPPKYRRAVVYAPPHPDEEAASGSGS
DIYVDGGYNCEYKCKELNMRAIRCSRQQHLMSHYPPHHPHHRSLMDCPAE
AAYSPPVVNSQQAYLGSNGSQLDLSSYHGGHHHHQHHHHHPHPPPLPAPP
PPSHSQSSPHYPTASGSSGSVAVSITGSGSGSGSAAGSAISAPASVATSS
VSPQPSSSSTGSTTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTL
PTLYRCVSCNKIVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIK
HADIKDRFFSHYVHMooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=1018
C1 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C2 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C3 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHMHSHAHAHGH
C4 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHLHSHAHAHGH
C5 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
C6 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHGHAHGH
C7 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHAHGH
C8 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHSHGHMHSHAHTHGH
C9 MMATSQDYFGNPYALFRGPPTTLRPRESPLGVGHPHGHGHIHSHAHAHGH
************************************.***:***.*:***
C1 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C2 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C3 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPSSPR
C4 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C5 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR
C6 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPQASPR
C7 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C8 GHGHGHGHAHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPPASPR
C9 GH------AHSHYAALDLQTPHKRNIETDVRAPPPPLPPPPLPLPAASPR
** ************************************* :***
C1 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C2 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C3 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C4 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C5 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C6 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C7 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
C8 YNTDQGAMDQQFCLRWNNHPSNLTGVLTSLLQREALCDVTLACEGETVKA
C9 YNTDQGAMDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKA
********************:*****************************
C1 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C2 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C3 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C4 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C5 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV
C6 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C7 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYAEMRSLLDFMYKGEVNV
C8 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
C9 HQTILSACSPYFETIFLQNQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNV
*********************************:****************
C1 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C2 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C3 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C4 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C5 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C6 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C7 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C8 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
C9 GQSSLPMFLKTAESLQVRGLTDNNNLNYRSDCDKLRDSAASSPTGRGPSN
**************************************************
C1 YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C2 YTGGLGGAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C3 YTGGLGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C4 YTGGLGGAGGVADAMRDSRDTLRSRCERDLRDELTQRSSSSMSERSSAAA
C5 YTGGMGGAGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C6 YTGGLGGSGGVADAMRDSRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
C7 YTGGLGGAGGVADAMRESRESLRSRCERDLRDELTQRSSSSMSERSSAAA
C8 YAG---GAGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERS--SA
C9 YTGGLGGSGGVADAMRESRDSLRSRCERDLRDELTQRSSSSMSERSSAAA
*:* *:********:**::************************* :*
C1 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C2 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C3 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C4 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C5 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C6 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C7 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
C8 AAAAAAAAVAAAGGNVNAAAVALGLTTPSGGERSPSVGSASAAAAAAAVA
C9 AAAAAAAAVAAAGGNVNAAAVALGLTTPTGGERSPSVGSASAAAAAAAVA
****************************:*********************
C1 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C2 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C3 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C4 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C5 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C6 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C7 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C8 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
C9 AAVAAAANRSASADGCSDRGSERGTLERTDSRDDLLQLDYSNKDNNNSNS
**************************************************
C1 SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR
C2 SSTGGNNNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERER--DR
C3 SSTG---NNNNNNNNNSSSNNNNSS-NRERNNSGERERERERERERERDR
C4 SSTG-NNNNNNNNNNSSSNNNNNSSSNRERNNSGERERERERERERERDR
C5 SSTG--NNNNNNNNNNNNNSSSNNNNNRERHNSRERERERERERERERDR
C6 SSTGNNNNNSSNNNNNNNSSSNNNNNNRERNNSRERERERERER--ERDR
C7 SSTGNNNNN--NNNNNN-SSSNNNNNNRERNNSRERERERERERERERDR
C8 SSTGNNNNN--NNNNNNNSSSNNNNNNRERNNSRERERERERE----RDR
C9 SSTG--NNNNNNNNNN----SSSNNNNRERNNSRERERERERERER--DR
**** ** ****. ..... ****:** ********* **
C1 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C2 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C3 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C4 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C5 DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C6 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C7 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C8 DRELSTTPVEQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
C9 DRELSTTPVDQLSSSKRRRKNSSSNCDNSLSSSHQDRHYPQDSQANFKSS
*********:****************************************
C1 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C2 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C3 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C4 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C5 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS
C6 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGG-NVGAASALSGLSQS
C7 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C8 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLSQS
C9 PVPKTGGSTSESEDAGGRHDSPLSMTTSVHLGGGGGNVGAASALSGLGQS
*********************************** ***********.**
C1 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C2 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C3 LSIKQELMDAQQQQQQQHREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C4 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKLHAEDMSTLLTQHA
C5 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA
C6 LSIKQELMDAQQQQQ--HREHHVALPPDYLPSSALKMHAEDMSTLLTQHA
C7 LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSSALKMHAEDMSTLLSQHA
C8 LSIKQELMDAQQQQQ--HREHHVGLPPDYLPSAALKLHAEDMSTLLTQHA
C9 LSIKQELMDAQHQQQ--HREHHVALPPDYLPSAALKMHAEDMSTLLTQHA
***********:*** ******.********:***:*********:***
C1 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------
C2 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHD--RHPD--------
C3 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHLRHPD--------
C4 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNIKHDHPRHPE--------
C5 LQAADAREEHNDTKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------
C6 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFISKHDR-SHPDGIRELDRE
C7 MQAADAREEHNDTKQLQLDQTDNIDGRVKCFNIKHDR--HPD--------
C8 LQAADARDEHNDAKQLQLDQTDNIDGRVKCFNSKHEP--HPD--------
C9 LQAADAREDHNDSKQLQLDQTDNIDGRVKCFNSKHDR--HPD--------
:******::***:****************** **: **:
C1 RELDRN-HREHDDDPGVIEEVVVDHVRE--MEAG-NEHDPEEMKEAA--Y
C2 RELDRN-HREHDDDPGVMEEVIVDHGRE--MEAGNNEHDPEEMKEAA--Y
C3 RELDRI-HREHDDDPGVIEEVVVDRGRE--MDAG-DEQEPEEMKEAT--Y
C4 RELDRN-HREHDDDPGVIEEVVVEHGRR--MDAG-DEQDPEEMKEVA--Y
C5 REQDRN-HREHDDPRGVVDEVVVDRDRDRDMDAE-EDQEPEEMEEAP--Y
C6 RERDREREREHDDQGGIIDEVVVDHDRD--MDAEEDLESAEDIKEAA--Y
C7 REQDRNLKHDS----GVGEVLVVDRDRD--MDAEEEPE-PEDIEEAAAYH
C8 REQDRNREPDH----GVIEEVVVDRDRD--MDVEEDHE-PADIEESA--Y
C9 REQDRV-HREHDEQGQVVDEVVVDRDRDRDMDAE-EDHEPEDIEEAAMPY
** ** . : : : ::*:: * *:. : . . :::* . :
C1 HATPPKYRRAVVYAPPHPDEEAASGSGS--DIYVDGG-YNCEYKCKELNM
C2 HATPPKYRRAVVYAPPHPDEEAASASGS--DVYVDGG-YNCEYKCKELNM
C3 HATPPKYRRAVVYAPPHPDEEAASGSGS--DVYVDGG-YNCEYKCKELNM
C4 HATPPKYRRAVVYAPPHPDEEAASGSGSGSDVYVDGG-YNCEYKCKELNM
C5 HAAPPKYRRAVVYAPPHPDEEAASGSASGSDIYVDGGGYNCEYKCKELNM
C6 HAAPPKYRRAVVYAPPHPDEEAASALGS--EIYVDSG-YNCEYKCKELNM
C7 HATPPKYRRAVVYAPPHPDEEVASASGS--EIYVDSG-YNCEYKCKELNM
C8 HGTPPKYRRAVVYAPPHPDEEAASRSGS--EIYVDGG-YNCEYKCKELNM
C9 HNAPPKYRRAVVYAPPHPDEEAASG--SGSDIYVDGG-YNCEYKCKELNM
* :******************.** * ::***.* ************
C1 RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN
C2 RAIRCSRQQHMMSHYSPHHP-HHRSLIDCPAEAAYSPPVANN-QAYLASN
C3 RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVVSN-QTYLASN
C4 RAIRCSRQQHLMSHYPPHHP-HHRSLIDCPAEAAYSPPVASN-QAYLASN
C5 RAIRCSRQQHLMSHYPPHHP-HHRALMDCPAEAAYSPPVASN-QAYLGSN
C6 RAIRCSRQQHLMSHYPPHHPHHHRSLMDCPAEAAYSPP-VASNQAYMSSN
C7 RAIRCSRQQHLMSHYPPHHP-HHRSMMECPAEAAYSPPVVASSPAYLTSN
C8 RAIRCSRQQHLLSHYPPHHP-HHRSLMDCPAEAAYSPP-VANSQAYLTSN
C9 RAIRCSRQQHLMSHYPPHHP-HHRSLMDCPAEAAYSPPVVNSQQAYLGSN
**********::***.**** ***::::********** . . :*: **
C1 GAVQQLDLSTYH----GHANHQLHQHPPSATHP-----SHSQSSPHYPSA
C2 GAVQQLDLSTYH----GHANHQLHQHPPSTPHP-----SHSQSSPHYPSA
C3 GAVQQLDLSSYHS--HGHANHQHHQHPPPAPHP-----SHSQGSPHYPPA
C4 GAVQQLDLSSYH----GHASHQHHQHPPSAPHPP----SHSQSSPHYPPA
C5 GSVQQLDLSSYHG---HGSHHHHHPHHPPLAMATAPPPSHSQSSPHYPAA
C6 GAVQQLDLSSYHG----HGSHH-HHHPSPLPMAPAPPPSLSQSSPHYPTA
C7 GAVQQLDLSSYHG----THHHHHHHHPAPLPLAPAPPSSHPQSSPHYPTA
C8 GAVQQLDLASYHG----HGPHHNHHHPPPLPPAPAPP-SHSQSSPHYPAA
C9 G--SQLDLSSYHGGHHHHQHHHHHPHPPPLPAP--PPPSHSQSSPHYPTA
* .****::** *: * * .. . . * .*.*****.*
C1 SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C2 SGA----GAGAGSVSVSIAGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C3 SVA------GAGSVSVSIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS
C4 SGAGVGVGAGSGSVSVAIAGSASGSAISAPASV-ATSAVSPQPSSSSTGS
C5 SGSATGSGSAAGSVSVSISGSASGSATSAPASV-ATSAVSPQPSSSSTGS
C6 S--------GSGSVSVSISGSGSGSAISAPASVSATSAVSPQPSSSSTGS
C7 SVS----VSGSGSGSGSVSISGSVSAASAPPSV-ATSAISPQPSSSSSGS
C8 SGL----GLGSGSGSGSVSISGSGSAISAPASV-ANSAISPQPSSSSSGS
C9 SGSS-GSVAVSITGSGSGSGSAAGSAISAPASV-ATSSVSPQPSSSSTGS
* : : * : : *.: ** ***.** *.*::********:**
C1 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C2 TSSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C3 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C4 TSS---AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C5 TSTS-----LAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C6 T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C7 TGSS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C8 T-SS--AAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
C9 TTTSSSAAAVAAAAAAAANRRDHNIDYSTLFVQLSGTLPTLYRCVSCNKI
* : :****************************************
C1 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C2 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C3 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C4 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C5 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C6 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C7 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C8 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
C9 VSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKIKHADIKDRFFSHY
**************************************************
C1 VHMooooooooooooo--
C2 VHMooooooooooo----
C3 VHMooooooooooo----
C4 VHMooo------------
C5 VHM---------------
C6 VHMo--------------
C7 VHMoooooooo-------
C8 VHMooooooooooooooo
C9 VHMooo------------
***
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
ins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 968 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 968 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/251/fru-PE/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump 