--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Wed Nov 16 07:38:15 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/241/ens-PG/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -9804.54 -9818.06
2 -9804.79 -9821.31
--------------------------------------
TOTAL -9804.66 -9820.65
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/241/ens-PG/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.613087 0.001159 0.548012 0.680727 0.612689 1501.00 1501.00 1.000
r(A<->C){all} 0.082828 0.000109 0.062417 0.103221 0.082417 796.53 958.82 1.000
r(A<->G){all} 0.198774 0.000286 0.166692 0.232768 0.198268 901.48 981.88 1.000
r(A<->T){all} 0.186132 0.000441 0.144762 0.227019 0.185113 875.92 940.02 1.001
r(C<->G){all} 0.045308 0.000039 0.033938 0.057623 0.044881 1116.19 1186.53 1.000
r(C<->T){all} 0.399607 0.000584 0.354251 0.448166 0.399371 922.90 930.06 1.000
r(G<->T){all} 0.087350 0.000158 0.062994 0.111869 0.086758 1037.59 1071.73 1.000
pi(A){all} 0.260758 0.000053 0.246586 0.275245 0.260813 952.00 1083.73 1.000
pi(C){all} 0.301600 0.000057 0.287099 0.316356 0.301573 1137.59 1241.60 1.000
pi(G){all} 0.305563 0.000058 0.290764 0.320499 0.305411 1064.01 1108.67 1.000
pi(T){all} 0.132078 0.000030 0.122015 0.142963 0.131985 1028.28 1153.54 1.000
alpha{1,2} 0.163723 0.000221 0.136791 0.194697 0.163062 1334.98 1357.82 1.000
alpha{3} 4.324000 1.009264 2.514916 6.249023 4.230555 1149.85 1175.00 1.000
pinvar{all} 0.483592 0.000631 0.436114 0.532034 0.484557 1132.75 1238.96 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -8902.719309
Model 2: PositiveSelection -8899.943839
Model 0: one-ratio -9024.550826
Model 3: discrete -8901.281011
Model 7: beta -8905.556267
Model 8: beta&w>1 -8901.368213
Model 0 vs 1 243.66303400000106
Model 2 vs 1 5.550940000000992
Model 8 vs 7 8.376108000000386
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ens-PG)
Pr(w>1) post mean +- SE for w
22 P 0.847 1.618
83 T 0.945 1.755
175 T 0.516 1.142
382 A 0.809 1.565
383 G 0.942 1.750
385 S 0.647 1.337
616 P 0.513 1.148
634 V 0.783 1.527
674 R 0.961* 1.776
675 Q 0.579 1.234
681 L 0.975* 1.796
685 S 0.851 1.622
709 P 0.894 1.683
711 P 0.961* 1.776
716 A 0.957* 1.772
914 T 0.593 1.261
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_ens-PG)
Pr(w>1) post mean +- SE for w
11 T 0.515 0.959 +- 0.589
22 P 0.898 1.414 +- 0.284
83 T 0.948 1.462 +- 0.200
100 F 0.562 1.017 +- 0.578
175 T 0.684 1.163 +- 0.526
382 A 0.882 1.399 +- 0.303
383 G 0.946 1.460 +- 0.204
385 S 0.801 1.313 +- 0.401
415 G 0.634 1.104 +- 0.551
616 P 0.724 1.232 +- 0.460
634 V 0.864 1.377 +- 0.338
645 E 0.705 1.213 +- 0.469
649 T 0.702 1.209 +- 0.471
654 V 0.520 0.964 +- 0.589
655 V 0.640 1.112 +- 0.549
674 R 0.957* 1.469 +- 0.188
675 Q 0.739 1.230 +- 0.484
676 E 0.647 1.149 +- 0.500
681 L 0.967* 1.478 +- 0.167
685 S 0.896 1.409 +- 0.297
691 V 0.642 1.114 +- 0.548
694 I 0.650 1.123 +- 0.544
708 V 0.700 1.207 +- 0.473
709 P 0.921 1.436 +- 0.250
711 P 0.957* 1.470 +- 0.183
716 A 0.955* 1.468 +- 0.188
836 K 0.650 1.128 +- 0.537
841 E 0.655 1.159 +- 0.495
914 T 0.772 1.284 +- 0.424
940 A 0.595 1.057 +- 0.568
948 T 0.704 1.212 +- 0.469
949 T 0.634 1.135 +- 0.504
>C1
MASLGGQHGNISTNPEVENTAKRPESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKKA
IFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPAD
YGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPHPPPT
SKQTANAHRPTNLTTTTATSTTTAGHNNFNNNNSYRKEDSVDSSPMVFRS
VYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNRLDQLAQPI
RRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSARARRAGSA
GSGSSSAAGIMSRSMTHLAGGGGQRERGKYSLGGGISTSFRPLASGAGGQ
RDSTSSRSGNATPGGHFNNSRPGSAMSTSTNMSTSGLVPRRPATAPRKPR
PASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSLI
VTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKEP
KTKDTSAMTRSMIVTSSSTSTITKPAPAPVAPTSAPVPEQNGVAKEVEKT
TADEPVPEAEVPTEAPVVVPSVSKAEKEALNTEKTEEGARQEEEQILAVE
SVPEALVTSINVEEKSDEGNEKEVPKPQEQAAPKKPSRSKENSEVRELTP
PEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLEA
ERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQREE
EEKRRREEEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERRK
RVEAIMLRTRKGGAATTPSKDANDKAAPAATAPENNSSSNSSVTGSSNNS
AEGSPSAADSTPAPTATETVQEAPNSQAMYEQSVLDKENSLINSFSTMII
DENAKNLQQVSNGKLLVDFESTNTVPAVANGNGHIENVNNKNDINLLQDV
VAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISLL
ooooooooooooooooooooo
>C2
MASLGGQHGNISTNPEVENTAKRPESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKKA
IFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPAD
YGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPHPPPT
SKQTANAHRPTNLTTTTATSTTTAGHNNFNNHNSYRKEDSVDSSPMVFRS
VYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNRLDQLAQPI
RRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSARARRAGSA
GSGSSSAAGIMSRSMTHLAGGGGQRERGKYSLGGGISTSFRPLASGAGGQ
RDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGLVPRRPATAPRKPR
PASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSLI
VTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKEP
KTKDTSAMTRSMIVTSSSTSTITKPAPAPVAPASAPVPEQNGVTKEVEKT
PVDEPVPEAEVPTEAPVAVPSVSKAEKEALNTEKTEEGARQEEEQTFVVE
SMPEALVTSVNVEEKSDEGTEKEVPKAQEQAAPKKPSRSKENSEVRELTP
PEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLEA
ERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQREE
EEKRRREEEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERRK
RVEAIMLRTRKGGAATTPSKDANDKAAPAAPAPDNNSSSNSSVTGSSNNS
AEGSPSTADSTPAPTATETVQEAPNSQAMYEQSVLDKENSLINSFSTMII
DENAKNLQQVSNGKLLVDFESTNTVPAVANGNGHIENVNNKNDINLLQDV
VAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISLL
ooooooooooooooooooooo
>C3
MASLGGQHGNISTNPEVENTAKRPESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKKA
IFEAEKERREYILKKNQERESRIEFRKRDKNSNGFAFGSSTPRLLDVPAD
YGLVSPSTFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPPT
SKQTANAHRPTNLTTTTATTSTTTAGHNNFNNHNSYRKEDSVDSSPMVFR
SVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNRLDQLAQP
IRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSARARRAGS
AGSGSSSAAGIMSRSMTHLAGGGGQRERGKYSLGGGISTSFRPLASGAGG
QRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMVPRRPATAPRKP
RPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSL
IVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKE
PKTKDTSAMTRSMIVTSSSTSTITKAAPAPAAPVSAPVPEQNGVAKEVEK
TPADEPVPEAEVPTEAPVAVPSVSKAEKEALNTEKTEEVARQEEEQTLVE
ESVPEALVTSVNVEEKSDEGTEKEVSKPQEQAVPKKPSRSKENSEVRELT
PPEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLE
AERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQRE
EEEKRRREDEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERR
KRVEAIMLRTRKGGAATTPSKDANDKAAPAAPAPENNSSSNSSVTGSSNN
SAEGSPSTVDSTPAPTAPVTVQEPPNNQAMYEQSVLDKENSLINSFSTMI
IDENAKNLQQVSNGKLLVDFEGTNAVPAVANGNGHIENVNNKNDINLLQD
VVAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISL
Loooooooooooooooooooo
>C4
MASLGGQHGNISTNPEVENTAKRPESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKKA
IFEAEKERREYILKKNQERESRIEFRKRDKNSNGFAFGSSTPRLLDVPAD
YGLVSPSTFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPPT
SKQTANAHRPTNLTTTTATSTTTAGHNNFNNHNSYRKEDSVDSSPMVFRS
VYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNRLDQLAQPI
RRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSARARRAGSA
GSGSSSAAGIMSRSMTHLAGGGGQRERGKYSLGGGISTSFRPLASGAGGQ
RDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMVPRRPATAPRKPR
PASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSLI
VTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLTKEP
KTKDTSAMTRSMIVTSSSTSTITKAAPAPAAPASAPVPEQNGVAKEVEKI
PADEPVPEAEVPTEAPVAVPSVSKAEKEALNTEKTEEVARQEEEQTFVEE
PVPEALVTSVNVEEKSDEGTEKEVPKQQEQAVPKKPSRSKENSEVRELTP
PEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLEA
ERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQREE
EEKRRREEEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERRK
RVEAIMLRTRKGGAATTPSKDANDKAAPAAPAPENNSSSNSSVTGSSNNS
AEGSPSTVDSTPAPTASETVQEPPNSQAMYEQSVLDKENSLINSFSTMII
DENAKNLQQVSNGKLLVDFEGTNTVPAVANGNGHIENVNNKNDINLLQDV
VAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTADSHENKDISLL
ooooooooooooooooooooo
>C5
MASLGVQHENISTNPEVENTPSKRAESREGSAERKDREEKLKYARDRQNE
ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
AIYEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
DYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
TSKQTANAHRPTNLTRTTATATTSTTTAGHNNNNFNNHNSYRKEDSVDSS
PMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNRLD
QLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGVGGRRQASARSR
RAGSAGSGSSSAAGIMSRSMTHLAGGGGGGGQQRERGKYSLGGGISTSFR
PLASGAGGQRESTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMVPRR
PATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRT
ANLMSTSLIVTSSSSRLSSAEKKTPSKREPPAPKAASASKALPSRTASSE
RISRLSKEPKGKDNSAMSRSMIVTSSSSTTTITKSAPAPAAAPAPEQNGV
AKEAEKTPAEVPVPTEEAPAPVAAPAVPSVSKAEKEALNSEKTEEQVARQ
EEEQQQQQQTLVVEPVPEALVTSVNVEEKSDEGTEKEVSKPQETQAPPKK
PSRSKENSEVRELTPPEGSDLMTASMMAKKITTEEEAKAALAERRRLARE
EAERQAELERQRLEAERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEE
ERLRKAIEEAQQREEEEKRKREEEEKQRVEREEAEKKAKEEAEKQRVEVA
ERLKREEKEREERRKRVEAIMLRTRKGGAATTPSKEANDKAAPAAPAPEN
NDSSNSSSVTGSSNNSAEGSPSTADSTPAPAATETVQQEPPNSKAMYEQS
VLDKENSLINSFSTMIIDENAKNLQQVSNGKLLVDFEGTNTVPAVANGNG
HIENVNNKNDINLLQDVVAPVASQLIDLSIESQDLHLNNNNSLLTSTAAT
TTLVTADSHENKDISLLoooo
>C6
MASLGVQHENISNNPEVENTSKRTESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKRA
IFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPAD
YGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPPT
SKQTANAHRPTNLTTTTATSTTTAGHNNFNNHNSYRKEDSVDSSPMVFRS
VYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNRLDQLAQPI
RRNGEHMRAILERERRERELEMLDETASLGGGGGRRGASASARARRAGSA
GSGSSSAAGIMSRSMTHLAGGGGGGGQRERGKYSLGGGISTSFRPLASGA
GGQRDTTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMVPRRPATAPR
KPRPASIAGTGMSLEEINKLKRDQKPPVKATAASPSAQTTPKRTANLMST
SLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALSSRTASSERISRVS
KEPKAKDTSAMTRSMIVTSSSTTTTITKAAPAPAAPAPVAAPALEQNGVA
KEAEKTPAEVPVPAVAAVPTEAPVAAPVSKAEKEALNSEKTEEVARQEEE
PTLVVEPVPEALITSVNVEEKSDEGTEKEAPKSQEQAVPKKPSRSKENSE
VRELTPPEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELE
RQRLEAERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEE
AQQREEEERRKREDEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKE
REERRKRVEAIMLRTRKGGAATTPSKDANDKAAPAAPAPENNSSSNSSVT
GSSNNSAEGSPSAADSTPAPAPAPVATETVQEPPNSQAMYEQSVLDKENS
LINSFSTMIIDENAKNLQQVSNGKLLVDFEGTNTVPAVANGNGHIENVNN
KNDINLLQDVVAPVASQLIDLSIESQDLHLNNNNSLLTSTAATTTLVTAD
SHENKDISLLooooooooooo
>C7
MASLGGENISNNPEVENTSKRAESREGSAERKDREEKLKYARDRQNEERH
RKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKKAIF
EAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPADYG
LVSPSAFWGQRRSTSISNVAGASLSRRSSERELTDSGAKKRASSSTDRQD
DHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPPTSS
KQTTNAHRPTNLTTTTATSTTTEGHNNFNNHNSYRKEDSVDSSPMVFRSV
YRRKTDLMPTIPSPRDGHYGSRSSLSTTPARTPGRAYSMNRLDQLAQPIR
RNGEHMRAILERERRERELEMLDETASLGGGGGRRGTTASARARRAGSAG
SGSSSAAGIMSRSMTHLAGGNGQRERGKYSLGGGISTSFRPLASGAGGQR
ESTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMVPRRPATAPRKPRP
ASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMSTSLIV
TSSSSRLSSAEKKTPSKRDPPVPKAASASKALPSRTASSERISRLNKEPK
TKDTSAMTRSMIVTSSSTTTITKAVPAQAAPALVSAPVPEQNGVAKETEK
SPAEVPVPVATVPTEVPVAVPSVSKAEKEALNSEKTEEVARQEAEETVVV
ESVPEALVTSVNVEEKSDEGTEKEAPKPQEQAVPKKPSRSKENSEVRELT
PPEGADLMTASMMAKKITTEEEAKAALAERRRLAREEAERQAELERQRLE
AERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEERLRKAIEEAQQRE
EEEKRKREDEEKQRVEREEAEKKAKEEAEKQRVEVAERLKREEKEREERR
KRVEAIMLRTRKGGAATTPSKDANDKAAPAAPAPENNSSTNSSVTGSSNN
SAEGSPSTADSTPAPAATETVQEPPNSQAMYEQSVLDKENSLINSFSTMI
IDENAKNLQQVSNGKLLVDFDGTNTVPAVANGNGHIENVNNKNDINLLQD
VVAPVATQLIDLSIESQQDLHLNNNNSLLTSTAATTTLVTADSHENKDIS
LLooooooooooooooooooo
>C8
MASLGGQHENISNNPEVENTSKRVESREGSVERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKKA
IYEAEKERREYILKKNQERESRIEVKRRDRNSIGFAFGSSTPRLLDVPAD
YGLVSPSAFWGQRRSTSISNVAGASLSRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGNEINIDGPAIPNPPPT
CKQTANAHRPTNLTTTTATTSTTTAGHNNNFNNHNSYRKEDSVDSSPMVF
RSVYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNRLDQLAQ
PIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAAANRARRAGS
AGSGSSSAAGIMSRSMTHLAGGGGGGGGQRERGKYSLGGGISTSFRPLAH
GAGGQRDSTSSRSGNATPGGHYNSSRPGSAMSTSTNMSTSGLVPRRPATA
PRKPRPASIAGTGMSLDEINKLKRDNKPPVKTTAASPSAQTTPKRTANLM
STSLIVTSSSSRLSSAEKKTPKREPPVPKAASASKALPSRTASSERISRL
SKEPKTKDTSAMTRSMIVTSSSSTTTTKQPAPVQAAPAPAPVAVSAPAPE
QNGVAKEAEKTPAEVPVPEAAVPTEAPVAVPSVTKAEKEALNSEKTEEVV
VRQEEEPTQVVEAVAEALITSVNVEEKSDEGTEKEASKPQEQAVPPKKPS
RSKENSEVRELTPPEGADLMTASMMARKITTEEEAKAALAERRRLAREEA
ERQAELERQRLEAERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEER
LRKAIEEAQQREEEERRKREDEEKQRVEREEAEKKAKEEAEKQRVEVAER
LKREEKEREERRKRVEAIMLRTRKGGAATTPSKDANDKAAPAAAAPENDS
SSNSSVTGSSNNSAEGSPSTVDSTPAPKAAETAQEPPNSQAMYEQSVLDK
ENSLINSFSTMIIDENAKNLQQVSNGKLLVDFEGTNTVPAVANGNGHIEN
VNNKNDINLLQDVVAPVATQLIDLSIESQDLHLNNNNSLLTSTAATTTLV
TADSHENKDISLLoooooooo
>C9
MASLGGQHENISNNPEVENTSKRSESREGSAERKDREEKLKYARDRQNEE
RHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRIRDTEKRHQVEERKKA
IFEAEKERREYILKKNQERESRIEVKRRDRNSIGFAFGSSTPRLLDVPAD
YGLVSPSAFWGQRRSTSISNVAGASLSRRSSERELADSGAKKRASSSTDR
QDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNTPPT
SNKQTANAHRPTNLTTTTATSTSTAGHNNFNNHNSYRKEDSCVDTSPMVF
RSVYRRKTDLMPTIPSPRDGHYGSRSSLSTTPARTPGRAYSMNRLDQLAQ
PIRRNGEHMRAILERERRERELEMLDETASLGGGGRRGTAASRARRAGSA
GSGSSTAAGIMSRSMTHLAGGGGGGGQRERGKYSLGGGISTSFRPLASGA
GGQRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGLVPRRPATAPR
KPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTPKRTANLMST
SLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTASSERISRLS
KEPKTKDNSAMTRSMIVTSSSSTTTTTKAAPAPAPAPVPAPISAPAPEQN
GVAKEVLPEKTPAEEPVPEAAPVPIEAPVAVPSVSKAEKEALNSEKTEEV
VRQVEEEQTLLVEPVPEEALIASINVEEKSDEGTEKETAKAQEQAAPKKP
SRSKENSEVRELTPPEGADLMTASMMAKKITTEEEAKAALAERRRLAREE
AERQAELERQRLEAERLAEIKAQEEEAERQRLFEEESTRLAEEQRRGEEE
RLRKAIEEAQQREEEEKRKREDEEKQRVEREEAEKKAKEEAEKQRVEVAE
RLKREEKEREERRKRVEAIMLRTRKGGAATTPSKDANDKAAPAASAPENN
SSSNSSVSGSSNNSAEGSPSTADSTPAPTATETETETVQEPPNSQAMYEQ
SVLDKENSLINSFSTMIIDENAKNLQQVSNGKLLVDFEGTNTVNTVPAVA
NGNGHIENVNNKNDINLLQDAVAPVATQLIDLSIESQDLHLNNNNSLLTS
TAATTTLVTADSHENKDISLL
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=1162
C1 MASLGGQHGNISTNPEVENT-AKRPESREGSAERKDREEKLKYARDRQNE
C2 MASLGGQHGNISTNPEVENT-AKRPESREGSAERKDREEKLKYARDRQNE
C3 MASLGGQHGNISTNPEVENT-AKRPESREGSAERKDREEKLKYARDRQNE
C4 MASLGGQHGNISTNPEVENT-AKRPESREGSAERKDREEKLKYARDRQNE
C5 MASLGVQHENISTNPEVENTPSKRAESREGSAERKDREEKLKYARDRQNE
C6 MASLGVQHENISNNPEVENT-SKRTESREGSAERKDREEKLKYARDRQNE
C7 MASLGGE--NISNNPEVENT-SKRAESREGSAERKDREEKLKYARDRQNE
C8 MASLGGQHENISNNPEVENT-SKRVESREGSVERKDREEKLKYARDRQNE
C9 MASLGGQHENISNNPEVENT-SKRSESREGSAERKDREEKLKYARDRQNE
***** : ***.******* :** ******.******************
C1 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
C2 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
C3 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
C4 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
C5 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRTRDTEKRHQVEERKK
C6 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKR
C7 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKK
C8 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRVRDTEKRHQVEERKK
C9 ERHRKIEELRAQAEAAQRYREQKEEERRRRIEEIRIRDTEKRHQVEERKK
*********************************** *************:
C1 AIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
C2 AIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
C3 AIFEAEKERREYILKKNQERESRIEFRKRDKNSNGFAFGSSTPRLLDVPA
C4 AIFEAEKERREYILKKNQERESRIEFRKRDKNSNGFAFGSSTPRLLDVPA
C5 AIYEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
C6 AIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
C7 AIFEAEKERREYILKKNQERESRIEVKKRDRNSIGFAFGSSTPRLLDVPA
C8 AIYEAEKERREYILKKNQERESRIEVKRRDRNSIGFAFGSSTPRLLDVPA
C9 AIFEAEKERREYILKKNQERESRIEVKRRDRNSIGFAFGSSTPRLLDVPA
**:**********************.::**:** ****************
C1 DYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C2 DYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C3 DYGLVSPSTFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C4 DYGLVSPSTFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C5 DYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C6 DYGLVSPSAFWGQRRSTSISNVAGASLTRRSSERELADSGAKKRASSSTD
C7 DYGLVSPSAFWGQRRSTSISNVAGASLSRRSSERELTDSGAKKRASSSTD
C8 DYGLVSPSAFWGQRRSTSISNVAGASLSRRSSERELADSGAKKRASSSTD
C9 DYGLVSPSAFWGQRRSTSISNVAGASLSRRSSERELADSGAKKRASSSTD
********:******************:********:*************
C1 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPHPPP
C2 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPHPPP
C3 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
C4 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
C5 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
C6 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
C7 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNPPP
C8 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGNEINIDGPAIPNPPP
C9 RQDDHRRKSSSMYEVFNWGYSNDEPPKRFSLSIAGSEINIDGPANPNTPP
***********************************.******** *:.**
C1 TS-KQTANAHRPTNLTTTTAT---STTTAGHNN--FNNNNSYRKEDS-VD
C2 TS-KQTANAHRPTNLTTTTAT---STTTAGHNN--FNNHNSYRKEDS-VD
C3 TS-KQTANAHRPTNLTTTTATT--STTTAGHNN--FNNHNSYRKEDS-VD
C4 TS-KQTANAHRPTNLTTTTAT---STTTAGHNN--FNNHNSYRKEDS-VD
C5 TS-KQTANAHRPTNLTRTTATATTSTTTAGHNNNNFNNHNSYRKEDS-VD
C6 TS-KQTANAHRPTNLTTTTATS---TTTAGHNN--FNNHNSYRKEDS-VD
C7 TSSKQTTNAHRPTNLTTTTAT---STTTEGHNN--FNNHNSYRKEDS-VD
C8 T-CKQTANAHRPTNLTTTTATT--STTTAGHNNN-FNNHNSYRKEDS-VD
C9 TSNKQTANAHRPTNLTTTTAT---STSTAGHNN--FNNHNSYRKEDSCVD
* ***:********* **** *:* **** ***:******** **
C1 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNR
C2 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNR
C3 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNR
C4 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSSTPARTPGRAYSMNR
C5 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNR
C6 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNR
C7 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRSSLSTTPARTPGRAYSMNR
C8 SSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRGSLSTTPARTPGRAYSMNR
C9 TSPMVFRSVYRRKTDLMPTIPSPRDGHYGSRSSLSTTPARTPGRAYSMNR
:******************************.***:**************
C1 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSA
C2 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSA
C3 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSA
C4 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAGSSA
C5 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGVGGR-RQASA
C6 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGASASA
C7 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGTTASA
C8 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGGGRRGAAAN-
C9 LDQLAQPIRRNGEHMRAILERERRERELEMLDETASLGGGG-RRGTAAS-
**************************************** * :.
C1 RARRAGSAGSGSSSAAGIMSRSMTHLAGGG---G-QRERGKYSLGGGIST
C2 RARRAGSAGSGSSSAAGIMSRSMTHLAGGG---G-QRERGKYSLGGGIST
C3 RARRAGSAGSGSSSAAGIMSRSMTHLAGGG---G-QRERGKYSLGGGIST
C4 RARRAGSAGSGSSSAAGIMSRSMTHLAGGG---G-QRERGKYSLGGGIST
C5 RSRRAGSAGSGSSSAAGIMSRSMTHLAGGGGGGGQQRERGKYSLGGGIST
C6 RARRAGSAGSGSSSAAGIMSRSMTHLAGGGGGGG-QRERGKYSLGGGIST
C7 RARRAGSAGSGSSSAAGIMSRSMTHLAGGN----GQRERGKYSLGGGIST
C8 RARRAGSAGSGSSSAAGIMSRSMTHLAGGGGGGGGQRERGKYSLGGGIST
C9 RARRAGSAGSGSSTAAGIMSRSMTHLAGGGGGGG-QRERGKYSLGGGIST
*:***********:***************. ***************
C1 SFRPLASGAGGQRDSTSSRSGNATPGGHFNNSRPGSAMSTSTNMSTSGLV
C2 SFRPLASGAGGQRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGLV
C3 SFRPLASGAGGQRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMV
C4 SFRPLASGAGGQRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMV
C5 SFRPLASGAGGQRESTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMV
C6 SFRPLASGAGGQRDTTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMV
C7 SFRPLASGAGGQRESTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGMV
C8 SFRPLAHGAGGQRDSTSSRSGNATPGGHYNSSRPGSAMSTSTNMSTSGLV
C9 SFRPLASGAGGQRDSTSSRSGNATPGGHFNSSRPGSAMSTSTNMSTSGLV
****** ******::*************:*.*****************:*
C1 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C2 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C3 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C4 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C5 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C6 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKATAASPSAQTTP
C7 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
C8 PRRPATAPRKPRPASIAGTGMSLDEINKLKRDNKPPVKTTAASPSAQTTP
C9 PRRPATAPRKPRPASIAGTGMSLEEINKLKRDQKPPVKTTAASPSAQTTP
***********************:********:*****:***********
C1 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTA
C2 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTA
C3 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTA
C4 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTA
C5 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPAPKAASASKALPSRTA
C6 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALSSRTA
C7 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKRDPPVPKAASASKALPSRTA
C8 KRTANLMSTSLIVTSSSSRLSSAEKKTP-KREPPVPKAASASKALPSRTA
C9 KRTANLMSTSLIVTSSSSRLSSAEKKTPSKREPPVPKAASASKALPSRTA
**************************** **:**.**********.****
C1 SSERISRLTKEPKTKDTSAMTRSMIVTSSS-TSTITKPAPAPVAP-----
C2 SSERISRLTKEPKTKDTSAMTRSMIVTSSS-TSTITKPAPAPVAP-----
C3 SSERISRLTKEPKTKDTSAMTRSMIVTSSS-TSTITKAAPAPAAP-----
C4 SSERISRLTKEPKTKDTSAMTRSMIVTSSS-TSTITKAAPAPAAP-----
C5 SSERISRLSKEPKGKDNSAMSRSMIVTSSSSTTTITKSAPAPAA------
C6 SSERISRVSKEPKAKDTSAMTRSMIVTSSSTTTTITKAAPAPAAPAP---
C7 SSERISRLNKEPKTKDTSAMTRSMIVTSSS-TTTITKAVPAQAAPAL---
C8 SSERISRLSKEPKTKDTSAMTRSMIVTSSSSTTTTKQPAPVQAAPAPAPV
C9 SSERISRLSKEPKTKDNSAMTRSMIVTSSSSTTTTTKAAPAP-APAPVPA
*******:.**** **.***:********* *:* .:..*. *
C1 -TSAPVPEQNGVAKEV--EKTTADEPVP--EAEVPTEAPVVVPSVSKAEK
C2 -ASAPVPEQNGVTKEV--EKTPVDEPVP--EAEVPTEAPVAVPSVSKAEK
C3 -VSAPVPEQNGVAKEV--EKTPADEPVP--EAEVPTEAPVAVPSVSKAEK
C4 -ASAPVPEQNGVAKEV--EKIPADEPVP--EAEVPTEAPVAVPSVSKAEK
C5 ---APAPEQNGVAKEA--EKTPAEVPVPTEEAPAPVAAPAVPS-VSKAEK
C6 -VAAPALEQNGVAKEA--EKTPAEVPVP-AVAAVPTEAPVAAP-VSKAEK
C7 -VSAPVPEQNGVAKET--EKSPAEVPVP--VATVPTEVPVAVPSVSKAEK
C8 AVSAPAPEQNGVAKEA--EKTPAEVPVP-EAA-VPTEAPVAVPSVTKAEK
C9 PISAPAPEQNGVAKEVLPEKTPAEEPVP-EAAPVPIEAPVAVPSVSKAEK
**. *****:**. ** ..: *** * .* .*.. . *:****
C1 EALNTEKTEEGARQEEEQ------ILAVESV-PEALVTSINVEEKSDEGN
C2 EALNTEKTEEGARQEEEQ------TFVVESM-PEALVTSVNVEEKSDEGT
C3 EALNTEKTEEVARQEEEQ------TLVEESV-PEALVTSVNVEEKSDEGT
C4 EALNTEKTEEVARQEEEQ------TFVEEPV-PEALVTSVNVEEKSDEGT
C5 EALNSEKTEEQVARQEEEQQQQQQTLVVEPV-PEALVTSVNVEEKSDEGT
C6 EALNSEKTEE-VARQEEE-----PTLVVEPV-PEALITSVNVEEKSDEGT
C7 EALNSEKTEEVARQEAEE------TVVVESV-PEALVTSVNVEEKSDEGT
C8 EALNSEKTEEVVVRQEEE-----PTQVVEAV-AEALITSVNVEEKSDEGT
C9 EALNSEKTEEVVRQVEEE-----QTLLVEPVPEEALIASINVEEKSDEGT
****:***** . : *: *.: ***::*:*********.
C1 EKEVPKPQE-QAAPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C2 EKEVPKAQE-QAAPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C3 EKEVSKPQE-QAVPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C4 EKEVPKQQE-QAVPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C5 EKEVSKPQETQAPPKKPSRSKENSEVRELTPPEGSDLMTASMMAKKITTE
C6 EKEAPKSQE-QAVPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C7 EKEAPKPQE-QAVPKKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
C8 EKEASKPQEQAVPPKKPSRSKENSEVRELTPPEGADLMTASMMARKITTE
C9 EKETAKAQEQAAP-KKPSRSKENSEVRELTPPEGADLMTASMMAKKITTE
***..* ** . ********************:*********:*****
C1 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C2 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C3 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C4 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C5 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C6 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C7 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C8 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
C9 EEAKAALAERRRLAREEAERQAELERQRLEAERLAEIKAQEEEAERQRLF
**************************************************
C1 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRRREEEEKQRVEREEA
C2 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRRREEEEKQRVEREEA
C3 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRRREDEEKQRVEREEA
C4 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRRREEEEKQRVEREEA
C5 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRKREEEEKQRVEREEA
C6 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEERRKREDEEKQRVEREEA
C7 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRKREDEEKQRVEREEA
C8 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEERRKREDEEKQRVEREEA
C9 EEESTRLAEEQRRGEEERLRKAIEEAQQREEEEKRKREDEEKQRVEREEA
*********************************:*:**:***********
C1 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C2 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C3 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C4 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C5 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C6 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C7 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C8 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
C9 EKKAKEEAEKQRVEVAERLKREEKEREERRKRVEAIMLRTRKGGAATTPS
**************************************************
C1 KDANDKAAPAATAPENNSSSNSS-VTGSSNNSAEGSPSAADSTPAPT---
C2 KDANDKAAPAAPAPDNNSSSNSS-VTGSSNNSAEGSPSTADSTPAPT---
C3 KDANDKAAPAAPAPENNSSSNSS-VTGSSNNSAEGSPSTVDSTPAPT---
C4 KDANDKAAPAAPAPENNSSSNSS-VTGSSNNSAEGSPSTVDSTPAPT---
C5 KEANDKAAPAAPAPENNDSSNSSSVTGSSNNSAEGSPSTADSTPAPAA--
C6 KDANDKAAPAAPAPENNSSSNSS-VTGSSNNSAEGSPSAADSTPAPAPAP
C7 KDANDKAAPAAPAPENNSSTNSS-VTGSSNNSAEGSPSTADSTPAPAA--
C8 KDANDKAAPAAAAPENDSSSNSS-VTGSSNNSAEGSPSTVDSTPAPKA--
C9 KDANDKAAPAASAPENNSSSNSS-VSGSSNNSAEGSPSTADSTPAPTATE
*:*********.**:*:.*:*** *:************:.******
C1 -ATETVQ-EAPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C2 -ATETVQ-EAPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C3 -APVTVQ-EPPNNQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C4 -ASETVQ-EPPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C5 --TETVQQEPPNSKAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C6 VATETVQ-EPPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C7 --TETVQ-EPPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C8 --AETAQ-EPPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
C9 TETETVQ-EPPNSQAMYEQSVLDKENSLINSFSTMIIDENAKNLQQVSNG
. *.* *.**.:************************************
C1 KLLVDFESTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C2 KLLVDFESTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C3 KLLVDFEGTN---AVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C4 KLLVDFEGTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C5 KLLVDFEGTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVASQLID
C6 KLLVDFEGTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVASQLID
C7 KLLVDFDGTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C8 KLLVDFEGTN---TVPAVANGNGHIENVNNKNDINLLQDVVAPVATQLID
C9 KLLVDFEGTNTVNTVPAVANGNGHIENVNNKNDINLLQDAVAPVATQLID
******:.** :*************************.*****:****
C1 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C2 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C3 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C4 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C5 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLoooo-----
C6 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C7 LSIESQQDLHLNNNNSLLTSTAATTTLVTADSHENKDISLLooooooooo
C8 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLLoooooooo-
C9 LSIESQ-DLHLNNNNSLLTSTAATTTLVTADSHENKDISLL---------
****** **********************************
C1 oooooooooooo
C2 oooooooooooo
C3 ooooooooooo-
C4 oooooooooooo
C5 ------------
C6 oo----------
C7 oooooooooo--
C8 ------------
C9 ------------
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/241/ens-PG/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-pro 