--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Mon Nov 14 16:02:09 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/226/Dlic-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -3282.82         -3299.80
2      -3282.44         -3299.51
--------------------------------------
TOTAL    -3282.61         -3299.67
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.736009    0.004936    0.597864    0.870293    0.733820   1318.46   1329.54    1.002
r(A<->C){all}   0.066031    0.000258    0.036407    0.096824    0.064921    858.88    979.40    1.000
r(A<->G){all}   0.239683    0.001136    0.174565    0.302448    0.237963    896.17    942.27    1.000
r(A<->T){all}   0.085465    0.000655    0.038143    0.134148    0.083772    957.50    960.37    1.000
r(C<->G){all}   0.032593    0.000076    0.016725    0.050303    0.032103    915.83   1005.75    1.000
r(C<->T){all}   0.525620    0.001901    0.442768    0.611951    0.525623    806.75    812.05    1.000
r(G<->T){all}   0.050607    0.000223    0.023325    0.080740    0.049263    948.11   1001.41    1.000
pi(A){all}      0.234624    0.000136    0.212803    0.256817    0.234289   1214.32   1267.49    1.000
pi(C){all}      0.292247    0.000155    0.269068    0.317248    0.291906   1045.26   1115.00    1.000
pi(G){all}      0.308302    0.000162    0.285841    0.333921    0.307814   1125.85   1217.08    1.000
pi(T){all}      0.164827    0.000104    0.145256    0.184468    0.164595    879.21   1024.00    1.000
alpha{1,2}      0.092519    0.000202    0.064408    0.119345    0.092260   1112.52   1306.76    1.000
alpha{3}        3.437729    0.868128    1.806443    5.259176    3.321660   1501.00   1501.00    1.000
pinvar{all}     0.527751    0.001181    0.460790    0.594094    0.528888   1274.74   1387.87    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-3120.39684
Model 2: PositiveSelection	-3120.39684
Model 0: one-ratio	-3153.9601
Model 3: discrete	-3120.152674
Model 7: beta	-3124.989396
Model 8: beta&w>1	-3120.152875


Model 0 vs 1	67.1265199999998

Model 2 vs 1	0.0

Model 8 vs 7	9.673041999999441

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PB)

            Pr(w>1)     post mean +- SE for w

    78 T      0.980*        1.290
   182 V      1.000**       1.316
   197 R      0.937         1.236
   302 T      1.000**       1.316
   342 T      0.981*        1.292
   345 P      0.991**       1.304
   347 G      0.930         1.227

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PB)

            Pr(w>1)     post mean +- SE for w

   182 V      0.927         1.731 +- 0.682
   197 R      0.594         1.213 +- 0.800
   302 T      0.956*        1.771 +- 0.680
   345 P      0.662         1.320 +- 0.712
   347 G      0.568         1.168 +- 0.794

>C1
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C2
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C3
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C4
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C5
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS
PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC

>C6
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C7
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C8
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C9
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT
LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS
PVGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo

>C10
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSECoo

CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=402 

C1              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C2              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C3              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C4              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C5              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C6              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C7              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C8              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C9              MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C10             MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
                **************************************************

C1              HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C2              HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C3              HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C4              HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C5              HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C6              HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C7              HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C8              HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C9              HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT
C10             QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
                :*********:****:***********:****:*****************

C1              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C2              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C3              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C4              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C5              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C6              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C7              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C8              MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C9              LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C10             MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
                :*************************************************

C1              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C2              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C3              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C4              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C5              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C6              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C7              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C8              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA
C9              FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA
C10             FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA
                ******************************* ************** ***

C1              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C2              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C3              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS
C4              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C5              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C6              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C7              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C8              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C9              LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C10             LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
                ******************************************** *****

C1              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C2              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C3              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C4              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C5              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C6              NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C7              NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C8              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C9              NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C10             NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
                ***:**********************************************

C1              TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN
C2              TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN
C3              TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN
C4              TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN
C5              TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS
C6              TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C7              TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C8              TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C9              TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS
C10             TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS
                *:******************:*******************. **.*....

C1              PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C2              PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C3              PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C4              PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C5              PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C6              PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C7              PAGPG-RTANG-TDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSEC
C8              PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C9              PVGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C10             PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSEC
                *.*** ***** ***:*****:**********************:*****

C1              oo
C2              oo
C3              oo
C4              oo
C5              --
C6              oo
C7              oo
C8              oo
C9              oo
C10             oo
                  




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  400 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  400 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.pro