--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Mon Nov 14 16:02:09 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/226/Dlic-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3282.82 -3299.80
2 -3282.44 -3299.51
--------------------------------------
TOTAL -3282.61 -3299.67
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.736009 0.004936 0.597864 0.870293 0.733820 1318.46 1329.54 1.002
r(A<->C){all} 0.066031 0.000258 0.036407 0.096824 0.064921 858.88 979.40 1.000
r(A<->G){all} 0.239683 0.001136 0.174565 0.302448 0.237963 896.17 942.27 1.000
r(A<->T){all} 0.085465 0.000655 0.038143 0.134148 0.083772 957.50 960.37 1.000
r(C<->G){all} 0.032593 0.000076 0.016725 0.050303 0.032103 915.83 1005.75 1.000
r(C<->T){all} 0.525620 0.001901 0.442768 0.611951 0.525623 806.75 812.05 1.000
r(G<->T){all} 0.050607 0.000223 0.023325 0.080740 0.049263 948.11 1001.41 1.000
pi(A){all} 0.234624 0.000136 0.212803 0.256817 0.234289 1214.32 1267.49 1.000
pi(C){all} 0.292247 0.000155 0.269068 0.317248 0.291906 1045.26 1115.00 1.000
pi(G){all} 0.308302 0.000162 0.285841 0.333921 0.307814 1125.85 1217.08 1.000
pi(T){all} 0.164827 0.000104 0.145256 0.184468 0.164595 879.21 1024.00 1.000
alpha{1,2} 0.092519 0.000202 0.064408 0.119345 0.092260 1112.52 1306.76 1.000
alpha{3} 3.437729 0.868128 1.806443 5.259176 3.321660 1501.00 1501.00 1.000
pinvar{all} 0.527751 0.001181 0.460790 0.594094 0.528888 1274.74 1387.87 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -3120.39684
Model 2: PositiveSelection -3120.39684
Model 0: one-ratio -3153.9601
Model 3: discrete -3120.152674
Model 7: beta -3124.989396
Model 8: beta&w>1 -3120.152875
Model 0 vs 1 67.1265199999998
Model 2 vs 1 0.0
Model 8 vs 7 9.673041999999441
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PB)
Pr(w>1) post mean +- SE for w
78 T 0.980* 1.290
182 V 1.000** 1.316
197 R 0.937 1.236
302 T 1.000** 1.316
342 T 0.981* 1.292
345 P 0.991** 1.304
347 G 0.930 1.227
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PB)
Pr(w>1) post mean +- SE for w
182 V 0.927 1.731 +- 0.682
197 R 0.594 1.213 +- 0.800
302 T 0.956* 1.771 +- 0.680
345 P 0.662 1.320 +- 0.712
347 G 0.568 1.168 +- 0.794
>C1
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C2
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C3
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C4
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN
PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C5
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS
PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
>C6
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C7
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C8
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C9
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT
LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS
PVGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C10
MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA
LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS
PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSECoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=402
C1 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C2 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C3 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C4 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C5 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C6 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C7 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C8 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C9 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
C10 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN
**************************************************
C1 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C2 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C3 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C4 HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT
C5 HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C6 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C7 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C8 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
C9 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT
C10 QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT
:*********:****:***********:****:*****************
C1 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C2 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C3 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C4 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C5 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C6 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C7 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C8 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C9 LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
C10 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH
:*************************************************
C1 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C2 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C3 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C4 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA
C5 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C6 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C7 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA
C8 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA
C9 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA
C10 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA
******************************* ************** ***
C1 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C2 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C3 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS
C4 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C5 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C6 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C7 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C8 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C9 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
C10 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS
******************************************** *****
C1 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C2 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C3 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C4 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C5 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C6 NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C7 NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C8 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C9 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
C10 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG
***:**********************************************
C1 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN
C2 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN
C3 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN
C4 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN
C5 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS
C6 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C7 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C8 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS
C9 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS
C10 TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS
*:******************:*******************. **.*....
C1 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C2 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C3 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C4 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C5 PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C6 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C7 PAGPG-RTANG-TDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSEC
C8 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C9 PVGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
C10 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSEC
*.*** ***** ***:*****:**********************:*****
C1 oo
C2 oo
C3 oo
C4 oo
C5 --
C6 oo
C7 oo
C8 oo
C9 oo
C10 oo
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.pro 