--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Mon Nov 14 16:02:09 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/226/Dlic-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -3282.82 -3299.80 2 -3282.44 -3299.51 -------------------------------------- TOTAL -3282.61 -3299.67 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/226/Dlic-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.736009 0.004936 0.597864 0.870293 0.733820 1318.46 1329.54 1.002 r(A<->C){all} 0.066031 0.000258 0.036407 0.096824 0.064921 858.88 979.40 1.000 r(A<->G){all} 0.239683 0.001136 0.174565 0.302448 0.237963 896.17 942.27 1.000 r(A<->T){all} 0.085465 0.000655 0.038143 0.134148 0.083772 957.50 960.37 1.000 r(C<->G){all} 0.032593 0.000076 0.016725 0.050303 0.032103 915.83 1005.75 1.000 r(C<->T){all} 0.525620 0.001901 0.442768 0.611951 0.525623 806.75 812.05 1.000 r(G<->T){all} 0.050607 0.000223 0.023325 0.080740 0.049263 948.11 1001.41 1.000 pi(A){all} 0.234624 0.000136 0.212803 0.256817 0.234289 1214.32 1267.49 1.000 pi(C){all} 0.292247 0.000155 0.269068 0.317248 0.291906 1045.26 1115.00 1.000 pi(G){all} 0.308302 0.000162 0.285841 0.333921 0.307814 1125.85 1217.08 1.000 pi(T){all} 0.164827 0.000104 0.145256 0.184468 0.164595 879.21 1024.00 1.000 alpha{1,2} 0.092519 0.000202 0.064408 0.119345 0.092260 1112.52 1306.76 1.000 alpha{3} 3.437729 0.868128 1.806443 5.259176 3.321660 1501.00 1501.00 1.000 pinvar{all} 0.527751 0.001181 0.460790 0.594094 0.528888 1274.74 1387.87 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -3120.39684 Model 2: PositiveSelection -3120.39684 Model 0: one-ratio -3153.9601 Model 3: discrete -3120.152674 Model 7: beta -3124.989396 Model 8: beta&w>1 -3120.152875 Model 0 vs 1 67.1265199999998 Model 2 vs 1 0.0 Model 8 vs 7 9.673041999999441 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Dlic-PB) Pr(w>1) post mean +- SE for w 78 T 0.980* 1.290 182 V 1.000** 1.316 197 R 0.937 1.236 302 T 1.000** 1.316 342 T 0.981* 1.292 345 P 0.991** 1.304 347 G 0.930 1.227 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Dlic-PB) Pr(w>1) post mean +- SE for w 182 V 0.927 1.731 +- 0.682 197 R 0.594 1.213 +- 0.800 302 T 0.956* 1.771 +- 0.680 345 P 0.662 1.320 +- 0.712 347 G 0.568 1.168 +- 0.794
>C1 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C2 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C3 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C4 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN PAGPGRTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C5 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC >C6 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C7 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS PAGPGRTANGTDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C8 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C9 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS PVGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo >C10 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS PAGPGRTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSECoo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=402 C1 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C2 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C3 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C4 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C5 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C6 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C7 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C8 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C9 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN C10 MTRLGVWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLN ************************************************** C1 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT C2 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT C3 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT C4 HWIKVLGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRT C5 HWIKVLGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT C6 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT C7 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT C8 HWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT C9 HWIKVLGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRT C10 QWIKVLGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRT :*********:****:***********:****:***************** C1 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C2 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C3 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C4 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C5 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C6 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C7 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C8 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C9 LRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH C10 MRNNSIDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEH :************************************************* C1 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA C2 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA C3 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA C4 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPA C5 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA C6 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA C7 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPA C8 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPA C9 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPA C10 FDFIQQWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPA ******************************* ************** *** C1 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C2 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C3 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVS C4 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C5 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C6 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C7 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C8 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C9 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS C10 LVVEKDAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVS ******************************************** ***** C1 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C2 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C3 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C4 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C5 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C6 NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C7 NRETEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C8 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C9 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG C10 NREAEVQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPG ***:********************************************** C1 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGN C2 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGN C3 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGN C4 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGN C5 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGS C6 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS C7 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS C8 TAGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGS C9 TTGQSSPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASS C10 TTGQSSPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGS *:******************:*******************. **.*.... C1 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C2 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C3 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C4 PAGPG-RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C5 PAGPGGRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C6 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C7 PAGPG-RTANG-TDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSEC C8 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C9 PVGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC C10 PAGPG-RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSEC *.*** ***** ***:*****:**********************:***** C1 oo C2 oo C3 oo C4 oo C5 -- C6 oo C7 oo C8 oo C9 oo C10 oo PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 400 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 400 type PROTEIN Struct Unchecked Input File /opt/ADOPS/226/Dlic-PB/batch/allfiles/tcoffee/input.fasta.pro