--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Mon Nov 14 15:44:13 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/226/Dlic-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -3908.33         -3926.98
2      -3908.66         -3926.57
--------------------------------------
TOTAL    -3908.48         -3926.80
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/226/Dlic-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.622056    0.003022    0.522815    0.732096    0.619135   1501.00   1501.00    1.000
r(A<->C){all}   0.060573    0.000198    0.034977    0.089029    0.059564    754.08    879.89    1.000
r(A<->G){all}   0.242889    0.001052    0.177915    0.305121    0.241912    780.03    889.41    1.000
r(A<->T){all}   0.081448    0.000534    0.040137    0.127871    0.080243    806.74    819.56    1.001
r(C<->G){all}   0.042642    0.000089    0.025917    0.062365    0.041855   1134.50   1143.27    1.000
r(C<->T){all}   0.523715    0.001672    0.441860    0.602989    0.523921    815.65    837.59    1.000
r(G<->T){all}   0.048735    0.000198    0.022935    0.077334    0.047465   1064.41   1127.16    1.000
pi(A){all}      0.253758    0.000119    0.233108    0.275055    0.253689   1140.98   1193.25    1.000
pi(C){all}      0.280527    0.000124    0.260145    0.303006    0.280336   1258.92   1279.00    1.001
pi(G){all}      0.300623    0.000133    0.278697    0.323010    0.300720   1234.00   1234.86    1.001
pi(T){all}      0.165091    0.000086    0.147856    0.183089    0.164840    895.63   1031.20    1.000
alpha{1,2}      0.103098    0.000212    0.076136    0.132587    0.102559   1299.95   1371.28    1.000
alpha{3}        3.550078    0.901658    1.961914    5.497243    3.414229   1228.19   1325.59    1.000
pinvar{all}     0.576094    0.000915    0.519303    0.636729    0.577041   1414.27   1435.33    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-3734.860307
Model 2: PositiveSelection	-3734.860308
Model 0: one-ratio	-3766.710794
Model 3: discrete	-3734.137777
Model 7: beta	-3740.226135
Model 8: beta&w>1	-3734.138167


Model 0 vs 1	63.700974000000315

Model 2 vs 1	1.99999976757681E-6

Model 8 vs 7	12.175935999999638

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PA)

            Pr(w>1)     post mean +- SE for w

   173 T      0.986*        1.545
   277 V      1.000**       1.565
   292 R      0.943         1.479
   397 T      1.000**       1.565
   437 T      0.987*        1.546
   440 P      0.994**       1.557
   442 G      0.913         1.433

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Dlic-PA)

            Pr(w>1)     post mean +- SE for w

   173 T      0.612         1.222 +- 0.672
   277 V      0.953*        1.720 +- 0.604
   292 R      0.673         1.321 +- 0.778
   397 T      0.954*        1.721 +- 0.605
   437 T      0.618         1.229 +- 0.667
   440 P      0.758         1.446 +- 0.685
   442 G      0.582         1.170 +- 0.766

>C1
MAMNSGTQTNALTSSFTMKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C2
MAMNSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C3
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C4
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C5
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGSPAGPG
GRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC
>C6
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNRETE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
RTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C7
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNRETE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
RTANGTDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C8
MALDSGTQTNALTSSFTTKKKDAATEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
RTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C9
MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRTLRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASSPVGPG
RTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
>C10
MALDSGTQTNALTSSFTTKKKDPAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNQWIKV
LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGSPAGPG
RTANGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSECoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=497 

C1              MAMNSGTQTNALTSSFTMKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C2              MAMNSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C3              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C4              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C5              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C6              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C7              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C8              MALDSGTQTNALTSSFTTKKKDAATEKENLWSAILNEVQTQGSTKLPSNK
C9              MALDSGTQTNALTSSFTTKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
C10             MALDSGTQTNALTSSFTTKKKDPAAEKENLWSAILNEVQTQGSTKLPSNK
                **::************* ****.*:*************************

C1              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C2              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C3              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C4              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C5              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C6              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C7              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C8              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C9              SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
C10             SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
                **************************************************

C1              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C2              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C3              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C4              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C5              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C6              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C7              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C8              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C9              VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
C10             VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNQWIKV
                *********************************************:****

C1              LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
C2              LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
C3              LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
C4              LGQHIESLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
C5              LGQHIESLQLEAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
C6              LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
C7              LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
C8              LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
C9              LGQHIDSLQLDAKEKEAARQRLTTTWQTYCEVGDDLDPGSPVKRTLRNNS
C10             LGQHIESLQLDAKEKEAARQRLATTWQSYCEVGDDLDPGSPVKRTMRNNS
                *****:****:***********:****:*****************:****

C1              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C2              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C3              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C4              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C5              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C6              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C7              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C8              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C9              IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
C10             IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
                **************************************************

C1              QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
C2              QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
C3              QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
C4              QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
C5              QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
C6              QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
C7              QWIRNFCLRHGTSLFYTSVKEDKNCDLLYKYLTHRIYGLPFRTPALVVEK
C8              QWIRNFCLRHGTSLFYTSVKEDKNCDQLYKYLTHRIYGLPFSTPALVVEK
C9              QWIRNFCLRHGTSLFYTSVKEDKNCDFLYKYLTHRIYGLPFHTPALVVEK
C10             QWIRNFCLRHGTSLFYTSVKEDKNCDMLYKYLTHRIYGLPFRTPALVVEK
                ************************** ************** ********

C1              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C2              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C3              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPIRKAVSNREAE
C4              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C5              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C6              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNRETE
C7              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNRETE
C8              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C9              DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
C10             DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
                *************************************** ********:*

C1              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
C2              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
C3              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
C4              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
C5              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
C6              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
C7              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
C8              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTAGQS
C9              VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
C10             VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
                **********************************************:***

C1              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGNPAGPG
C2              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGGGGSGAAGNPAGPG
C3              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGAGNPAGPG
C4              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGSGGVGNPAGPG
C5              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPAGGGPGGAGSPAGPG
C6              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
C7              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
C8              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGGAGSPAGPG
C9              SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPASGGPGAASSPVGPG
C10             SPKKIDPKLTPATPGTEGVLANFFNSLLHKKSGSPASGGSGGAGSPAGPG
                ***************:*******************. **.*....*.***

C1              -RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C2              -RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C3              -RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C4              -RTANG-TDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C5              GRTANGGTDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC--
C6              -RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C7              -RTANG-TDAMMTPEKMAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C8              -RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C9              -RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSECoo
C10             -RTANG-TDAMMTPEKLAVRTDAAAELDRLSRSVKKEIDLSQSECoo
                 ***** ***:*****:**********************:*****  




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  495 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  495 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/226/Dlic-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0