--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Mon Nov 14 15:23:45 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/216/Crtc-PC/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -8317.33 -8336.49
2 -8317.09 -8333.25
--------------------------------------
TOTAL -8317.21 -8335.83
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 1.039726 0.003197 0.933180 1.150670 1.038607 1473.64 1474.72 1.000
r(A<->C){all} 0.062827 0.000086 0.046185 0.081957 0.062696 911.28 1017.79 1.002
r(A<->G){all} 0.305638 0.000465 0.261799 0.345928 0.305819 890.35 964.76 1.000
r(A<->T){all} 0.137089 0.000314 0.102896 0.170957 0.136548 830.08 925.83 1.000
r(C<->G){all} 0.041803 0.000043 0.030428 0.055768 0.041555 1128.78 1149.98 1.000
r(C<->T){all} 0.377456 0.000577 0.331298 0.423177 0.376858 861.98 988.76 1.000
r(G<->T){all} 0.075186 0.000143 0.051504 0.097981 0.074462 995.44 1202.42 1.000
pi(A){all} 0.247182 0.000066 0.231400 0.262640 0.247175 949.85 1050.19 1.000
pi(C){all} 0.322332 0.000073 0.305216 0.338929 0.322234 944.44 969.77 1.000
pi(G){all} 0.275083 0.000068 0.259260 0.291533 0.274921 1113.20 1177.56 1.000
pi(T){all} 0.155403 0.000040 0.144077 0.168545 0.155206 1063.14 1102.54 1.000
alpha{1,2} 0.127778 0.000104 0.109023 0.149438 0.127319 1440.39 1470.69 1.000
alpha{3} 4.906624 1.136628 2.907462 6.897088 4.784663 1501.00 1501.00 1.000
pinvar{all} 0.354967 0.000779 0.298718 0.407152 0.355908 1371.95 1394.22 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -6969.568605
Model 2: PositiveSelection -6969.568606
Model 0: one-ratio -7061.250838
Model 3: discrete -6964.560527
Model 7: beta -6968.380219
Model 8: beta&w>1 -6964.383596
Model 0 vs 1 183.36446599999908
Model 2 vs 1 1.999998858082108E-6
Model 8 vs 7 7.993245999999999
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Crtc-PC)
Pr(w>1) post mean +- SE for w
175 A 0.973* 1.331
176 N 0.747 1.099
183 P 0.676 1.022
210 L 0.971* 1.329
232 L 0.900 1.256
293 Q 0.695 1.044
425 A 0.968* 1.326
435 Q 0.911 1.267
486 P 0.743 1.092
600 Q 0.549 0.893
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_Crtc-PC)
Pr(w>1) post mean +- SE for w
172 S 0.554 1.047 +- 0.527
175 A 0.945 1.457 +- 0.191
176 N 0.758 1.283 +- 0.397
183 P 0.775 1.284 +- 0.418
186 P 0.529 0.974 +- 0.584
210 L 0.957* 1.466 +- 0.174
232 L 0.903 1.416 +- 0.267
286 G 0.516 0.959 +- 0.587
293 Q 0.758 1.276 +- 0.411
425 A 0.949 1.460 +- 0.187
435 Q 0.909 1.422 +- 0.257
486 P 0.821 1.331 +- 0.377
500 P 0.535 1.019 +- 0.539
592 S 0.584 1.080 +- 0.519
600 Q 0.639 1.156 +- 0.474
>C1
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL
VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE
SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES
LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQQQQPGQPRSHSP
HHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQ
QLQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTA
LQNYGPQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPFSP
AGGGGGAGPGSPYQQQQHSPTGNTQQQQQQHQQPSNSPHLSFTNLATTQA
AVTTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPAS
PIRQQQQAHQQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNS
SPEQQGFANNFVALDFDDLSGGGGGGPSGGGGSNGGGLTNGYNKPEMLDF
SELSGSPEASGNNNHMRRGVSNLNNNGLSNGVVGSTHNGSTNLNGAGNNN
SSSGGGTAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQHHHHQ
QQQQQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNA
CSNSNVVMNHQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNA
DYTREIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNooo
ooooooooooooooooooo
>C2
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL
VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE
SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES
LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQPGQPRSHSPHHG
INRTMSPQAQRRKSPILQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQLQ
QHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTALQNYGPQ
QQQQQSQQQQSQQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGGA
GPGSPYQQQQHSPTGNTQQQQHQQPSNSPHLSFTNLATTQAAVTTFNPLP
TLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAH
QQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQGFAN
NFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKPEMLDFSELSGSPEA
SGNNNHMRRGVSNLNNNGLSNGVVGSTHNGSTNLNGAGNNNSSSGGGTAQ
DPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQHHHHQQQQQQHHQQ
QHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSNS
NVVMNHQQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADYT
REIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNoooooo
ooooooooooooooooooo
>C3
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKIIDGL
VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE
SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES
LWRRSSSDSALHQSALVAGFNSDVNAMGASYQQQQHQQPQQGQPRSHSPH
HGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQ
LQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTAL
QNYGPQQQQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPF
SPAGGGGGAGPGSPYQQQHSPTGNTQQQQHQQPSNSPHLSFTNLATTQAA
VSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASP
IRQQQQVQQQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSS
PEQQGFANNFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKSEMLDFS
ELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSS
SGGGTAQDPLGITTSPVPSPLGCPSSPLPIPMSAQSSPQQQHHHHQQQQQ
QHHHQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSNS
NVVMNHQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADFTR
EIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNooooooo
ooooooooooooooooooo
>C4
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL
VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE
SRGRSVGVGPMRRPSERKQDRSPYGSSNTQQTLDNGQLNPHLLGPPTAES
LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQPQPGQPRSHSPH
HGISRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQ
LQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTAL
QNYGPQQPQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPF
SPAGGGGGAGPGSPYQQQHSPTGNTQQQHQQPSNSPHLSFTNLATTQAAV
STFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPI
RQQQQAQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQG
FANNFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKSEMLDFSELSGS
PEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSNSGGGG
TAQDPLGITTSPVPSPLGCPSSPLPIPMSAQSSPQQHHHHHQQQQQHHQQ
QHHQQQQLSLSLHHSPHHSPLHSPHHGNSPLSSSSPVSHNACSNSNVVMN
HQHQQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADFPREI
FDSLDLDLGQMDVAGLQMLSDQSPIMIADPNIEDSFRRDLNooooooooo
ooooooooooooooooooo
>C5
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQNPNQKI
LESLVGGQEVSQSSPGAGNGGGSGSGSGASGGGASPDGLGGGGGSPTAYR
ESRGRSVGVGPMRRPSERKQDRSPYGSSSGTQQTLDNGQLNPHLLGPPTA
ESLWRRSSSDSALHQSALVAGFNADVNSMGGGNYQQQQQHQQQQQSGQTR
SHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQQQHQHHQL
HQQLQMQQLQQHQQQHQQQQQHQQQQTTPYNNAKFANPVFRPLQDQVNFA
NTGSLPDLTALQNYGPQQQQQQTQQPQQQLQQTLSPVMSPHNHRRDRDQS
PSPFSPAGGGAGPGSPYQQQQHSPTGNTQQQQQQQPSSSPHLSFTNLATT
QAAVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAP
ASPIRQQQQQVQQQQQQQQQQQQQQQQGHQQFDNSYNSLNTSFHNQFEIF
SLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGGNGSNGGGALTNGYNNK
QEMLDFSELSGSPEASGNNNHMRRGVSNLNNNNGLSNGVGSTHNGSTNLN
GAGNNNGSSGGGSAQDPLGITASPVPSPLGCPSSPLPIPMSAQASPQHQH
HHQQQQQQQQHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSS
PVSHNACSNSNVVMNHIQQQQQQHQPHLHQGSSQSHTPTTANIPSIIFSD
YSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRD
LNooooooooooooooooo
>C6
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQKILESL
VGGPEVSQSSPGAGNGTGGGGGGGSGSGSGASGGGASPDGLGGGGGSPTA
YRESRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPT
AESLGRRSNSDSALHHSALVAGFNADVNSMGASYQQQHQQQPGQPRSHSP
HHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQHQQMQQQHQYQLHQQLQ
MQQLQQQQHQQQQQQQQTTPYNNAKFANPVFRPLQDQVNFANTGSLPDLT
ALQNYGPQQQQQSQQQQQQQQQQQSQQQQQQLQQTLSPVMSPHNHRRDRD
QSPSPFSPAGGGGGGAGPGSPYQQQQHSPTGNTQQQQQQQQQQPSSSPHL
SFTNLATTQAAVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSA
TDLHSSAPASPIRQQQQAQQQQQQQQQQQQQQGHQQQQQFDNSYNSLNTS
FHNQFEIFSLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGSGSNGGLTN
GYNKQEMLDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGST
NLNGAGNNNSSSGGGSAQDPLGIAASPVPSPLGCPSSPLPIPISAQTSPQ
QQQHHHHHQQQQQHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHGSSPLS
SSSPVSHNACSNSNVVMNHHQQQHQHQPHLHQGSSQSHTPTTANIPSIIF
SDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFR
RDLNooooooooooooooo
>C7
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILECL
GGGQEVSQSSPGAGNGSGGGGGSGSGSGASGGGASPDGLGGGGGSPTAYR
ESRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTTE
NSWRRSSSDSALHQSALVAGFNDVNSMGGNYQQQQHQQQQSGQPRSHSPH
HGINRTLSPQAQRRKSPILQPHQLQLQQLQQQQQHMQQQHQNQLHQQLQM
QQMQQQQQQQQQHQQNTPYNNAKFANPVFRPLQDQVNFANTGSLPDLTAL
HTYGPQQQQQSQQQHTQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGG
GGGAGPGSPYQQQQHSPTGNTQQQQQQPSSSPHLSFTNLATTQAAVSTFN
PLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQ
QVQQQQQQQQQQQQQQQTHQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNS
SPEQQGFANNFVALDFDDLSGGGGVSGGGNGSNGGGLTNGYNKPDMLDFS
ELSGSPESSGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSS
SGGGSGQDPLGIAASPVPSPLGCPSSPLPIPMSAQASPQQHHHHHQQQQQ
QHHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSN
SNVVMNHHQQQQQHQHQHHQHQGSSQSHTPTTANIPSIIFSDYSSNADFS
REIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNoooooo
ooooooooooooooooooo
>C8
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPANQKILECL
GGGHEVSQSSPGSGNGTGGGGGSGSGSGASGGGASPDGLAGGGGGGSPTT
YRESRGRSVGVGPMRRPSERKQDRSPYGSSGGTQQTLDNGQLNPHLLGPP
TADSLWRRSSSDSALHQTALGAGFDTNVNMMHPNYQPQQHQQQQQQQPGQ
PRSHSPHHGINRTMSPQAQRRKSPGLQPPQLQLQQLQQQHQQMQQQHQMH
QQLQMQQLHQQQHQQQQQQQTTPYNNAKFANPVFRPLQEQANFANTGSLP
DLTALQNYTPQQQQQSQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGG
GGGAGPGSPYQQQQHSPTGNTQQQQQQQQQQQQQPSSSPHLSFTNLATTQ
ATVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPA
SPIRQQQQVQQQQQQQQQQQQQAHQQQQQFDNSYNSLNTSFHNQFEIFSL
GDSNSSPEQQGFANNFVALDFDELSGGGGGGSGGGSNGGGLTNGYNKQEM
LDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGN
NNSSSGGGSTQDPLGITASPVPSPLGCPSSPLPIPMSAQTSPQQQHHHQH
QQQQQQQHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHGNSPLSSSSPVSH
NACSNSNVVMNHHQQQQQHHHQQQHLQGSSQSHTPTTTNIPSIIFSDYSS
NADFSREIFDTLDLDLGQMDVAGLQMLSDQNSIMIADANIEDSFRRDLNo
ooooooooooooooooooo
>C9
MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPANQKILECL
GGVQEVSQSSPGSGNGTGGGGGSGSGSGASGGGASPDGLAGGGGGSPTAY
RESRGRSVGVGPMRRPSERKQDRSPYGSSSSTQQTLDNGQLNPHLLGPPT
SDNLWRRSSSDSALHQTALGAGFDTNVNSMYQQQQQQQHHQQQQQQQQQP
GQTRSHSPHHGINRTMSPQAQRRKSPALQHPQLQLQQLQQQQMQQQHQLH
QQLQMQQLQQQQHQQQQQQQQQQQQTTPYNNAKFTNPVFRPLQEQANFAN
TGSLPDLTALQNYAPQQQQQIQQQQQQQLQQTLSPVMSPHNHRRERDQSP
SPFSPAGGGGGAGPGSPYQQQQHSPTGNTQQQQQQQQPSSSPHLSFTNLA
TTQATVATFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSS
APASPIRQQQQAQQQQQQQQQQQQQAAHQQQQQFDNSYNSLNTSFHNQFE
IFSLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGSAGGGGGGGGVGSNG
GGLTNGYNKQEMLDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGST
HNGSTNLNGAGNNNSSSGGGSTQDPLGITTSPVPSPLGCPSSPLPIPMSA
QTSPQQQHNHHHHHHQHQQQQQQHHQQQHHQQQQLSLSLHHSPHHSPMHS
PHHGNSPLSSSSPVSHNACSNSNVVMNHHQQQQQQQQHHHQQQHHLQGSS
QSHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQ
NPIMIADPNIEDSFRRDLN
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=896
C1 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI
C2 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI
C3 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI
C4 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI
C5 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQNPNQKI
C6 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVN----QKI
C7 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI
C8 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPAN----QKI
C9 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPAN----QKI
**************************************:**.* ***
C1 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG
C2 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG
C3 IDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG
C4 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG
C5 LESLVGGQEVSQSSPGAGN------GGGSGSGSGASGGGASPDGLGGGGG
C6 LESLVGGPEVSQSSPGAGNGTGGGGGGGSGSGSGASGGGASPDGLGGGGG
C7 LECLGGGQEVSQSSPGAGNGSG--GGGGSGSGSGASGGGASPDGLGGGGG
C8 LECLGGGHEVSQSSPGSGNGTG--GGGGSGSGSGASGGGASPDGLAGGGG
C9 LECLGGVQEVSQSSPGSGNGTG--GGGGSGSGSGASGGGASPDGLAGGGG
:: * * ********:** ********************.****
C1 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP
C2 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP
C3 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP
C4 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSN-TQQTLDNGQLNP
C5 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSSGTQQTLDNGQLNP
C6 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP
C7 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP
C8 GGSPTTYRESRGRSVGVGPMRRPSERKQDRSPYGSSGGTQQTLDNGQLNP
C9 G-SPTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSSSTQQTLDNGQLNP
. **:******************************. ************
C1 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQQ
C2 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQ-
C3 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNAMG-ASYQQQQHQQP
C4 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQP
C5 HLLGPPTAESLWRRSSSDSALHQSALVAGFNADVNSMGGGNYQQQQQHQQ
C6 HLLGPPTAESLGRRSNSDSALHHSALVAGFNADVNSMG-ASYQQQHQ---
C7 HLLGPPTTENSWRRSSSDSALHQSALVAGFN-DVNSMG-GNYQQQQHQQ-
C8 HLLGPPTADSLWRRSSSDSALHQTALGAGFDTNVNMMHPNYQPQQHQQQQ
C9 HLLGPPTSDNLWRRSSSDSALHQTALGAGFDTNVNSMYQQQQQQQHHQQQ
*******::. ***.******::** ***: :** * **::
C1 -QQ---PGQPRSHSPHHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ
C2 ------PGQPRSHSPHHGINRTMSPQAQRRKSPILQPHQLQLQQLQQQQQ
C3 -Q----QGQPRSHSPHHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ
C4 -Q----PGQPRSHSPHHGISRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ
C5 QQQ---SGQTRSHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQQQ
C6 -QQ---PGQPRSHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQHQ
C7 -QQ---SGQPRSHSPHHGINRTLSPQAQRRKSPILQPHQLQLQQLQQQQQ
C8 QQQ---PGQPRSHSPHHGINRTMSPQAQRRKSPGLQPPQLQLQQLQQQHQ
C9 QQQQQQPGQTRSHSPHHGINRTMSPQAQRRKSPALQHPQLQLQQLQQQ--
**.*********.**:********** ** **********
C1 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV
C2 QMQHQHQL---HQQLQMQQLQQ---HQQQ----QQQQNTPYNNAKFTNPV
C3 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV
C4 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV
C5 QMQQQHQHHQLHQQLQMQQLQQHQQQHQQQQQHQQQQTTPYNNAKFANPV
C6 QMQQQHQY-QLHQQLQMQQLQQ--QQHQQQQ--QQQQTTPYNNAKFANPV
C7 HMQQQHQN-QLHQQLQMQQMQQ---QQQQQQ--QHQQNTPYNNAKFANPV
C8 QMQQQHQM---HQQLQMQQLHQQQHQQQQQQQ-----TTPYNNAKFANPV
C9 QMQQQHQL---HQQLQMQQLQQQQHQQQQQQQQQQQQTTPYNNAKFTNPV
:**:*** ********::* ::** .********:***
C1 FRPLQDQVNFANTGSLPDLTALQNYGPQQ---QQQQSQQ--------QPS
C2 FRPLQDQVNFANTGSLPDLTALQNYGPQQ---QQQQSQQ--------QQS
C3 FRPLQDQVNFANTGSLPDLTALQNYGPQQQQQQQQQSQQ--------QPS
C4 FRPLQDQVNFANTGSLPDLTALQNYGPQQPQQQQQQSQQ--------QPS
C5 FRPLQDQVNFANTGSLPDLTALQNYGPQQ----QQQ-----------QTQ
C6 FRPLQDQVNFANTGSLPDLTALQNYGPQQ----QQQSQQQQQQQQQQQSQ
C7 FRPLQDQVNFANTGSLPDLTALHTYGPQQ----QQQSQ---------QQH
C8 FRPLQEQANFANTGSLPDLTALQNYTPQQ-----QQ-------------Q
C9 FRPLQEQANFANTGSLPDLTALQNYAPQQ-----QQQI----------QQ
*****:*.**************:.* *** **
C1 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ
C2 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ
C3 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPY-QQQ
C4 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPY-QQQ
C5 QPQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGG---AGPGSPYQQQQ
C6 QQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGGGAGPGSPYQQQQ
C7 TQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGG-AGPGSPYQQQQ
C8 SQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGG-AGPGSPYQQQQ
C9 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ
*******************:************** ******* ***
C1 HSPTGNTQQQQQQHQQ------PSNSPHLSFTNLATTQAAVTTFNPLPTL
C2 HSPTGNTQQQ--QHQQ------PSNSPHLSFTNLATTQAAVTTFNPLPTL
C3 HSPTGNTQQQ--QHQQ------PSNSPHLSFTNLATTQAAVSTFNPLPTL
C4 HSPTGNT-QQ--QHQQ------PSNSPHLSFTNLATTQAAVSTFNPLPTL
C5 HSPTGNTQQQ--QQQQ------PSSSPHLSFTNLATTQAAVSTFNPLPTL
C6 HSPTGNTQQQ--QQQQQQ---QPSSSPHLSFTNLATTQAAVSTFNPLPTL
C7 HSPTGNTQQQ--QQQP-------SSSPHLSFTNLATTQAAVSTFNPLPTL
C8 HSPTGNTQQQ--QQQQQQQQQQPSSSPHLSFTNLATTQATVSTFNPLPTL
C9 HSPTGNTQQQ--QQQQ-----QPSSSPHLSFTNLATTQATVATFNPLPTL
******* ** *:* *.**************:*:********
C1 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAHQQ
C2 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAHQQ
C3 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ
C4 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ
C5 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQQVQQ
C6 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ
C7 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ
C8 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ
C9 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ
********************************************** **
C1 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C2 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C3 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C4 QQ----AQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C5 QQQQQQQQQQQQ-QQGHQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C6 QQQQQQQQQQQG-HQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C7 QQQQQQQQQQQQTHQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C8 QQQQQQQQQQ-AHQQQ-QQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
C9 QQQQQQQQQQAAHQQQ-QQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ
** *** ********************************
C1 GFANNFVALDFDDLSGGGGGGPSGG------GGSNGGG-LTNGYN-KPEM
C2 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KPEM
C3 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KSEM
C4 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KSEM
C5 GFANNFVALDFDDLSGGG---GGGG------NGSNGGGALTNGYNNKQEM
C6 GFANNFVALDFDDLSGGG---GGG-------SGSNGG--LTNGYN-KQEM
C7 GFANNFVALDFDDLSGGGGV-SGGG------NGSNGGG-LTNGYN-KPDM
C8 GFANNFVALDFDELSGGGGGGSGGG--------SNGGG-LTNGYN-KQEM
C9 GFANNFVALDFDDLSGGGGGGSAGGGGGGGGVGSNGGG-LTNGYN-KQEM
************:***** .* **** ****** * :*
C1 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNGVVGSTHNGSTNLNGA
C2 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNGVVGSTHNGSTNLNGA
C3 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
C4 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
C5 LDFSELSGSPEASGNNNHMRRGVSNLNNNNGLSNG-VGSTHNGSTNLNGA
C6 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
C7 LDFSELSGSPESSGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
C8 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
C9 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA
***********:***************** ***** **************
C1 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQ
C2 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQ
C3 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSS--PLPIPMSAQSSPQQQ
C4 GNNNSNSGGGGTAQDPLGITTSPVPSPLGCPSS--PLPIPMSAQSSPQQ-
C5 GNNNGSSGGG-SAQDPLGITASPVPSPLGCPSS--PLPIPMSAQASPQHQ
C6 GNNNSSSGGG-SAQDPLGIAASPVPSPLGCPSS--PLPIPISAQTSPQQQ
C7 GNNNSSSGGG-SGQDPLGIAASPVPSPLGCPSS--PLPIPMSAQASPQ-Q
C8 GNNNSSSGGG-STQDPLGITASPVPSPLGCPSS--PLPIPMSAQTSPQQQ
C9 GNNNSSSGGG-STQDPLGITTSPVPSPLGCPSS--PLPIPMSAQTSPQQQ
****..**** : ******::************ *:***:***:***
C1 H----HHHQQQQQ-----QHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C2 H----HHHQQQQQQHHQQQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C3 H----HHHQQQQQ-----QHHHQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C4 H----HHHHQQQQ-----QHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHG
C5 H----HHQQQQQQQ---QHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C6 Q----HHHHHQQQQ---QHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C7 H----HHHHQQQQQ---QHHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
C8 H----HHQHQQQQQ---QQHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHG
C9 HNHHHHHHQHQQQQ---QQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG
: **:::*** :*::*********************:******
C1 NSPLSSSSPVSHNACSNSNVVMNHQ--QQQQQ-----HHHQQHHHQGSSQ
C2 NSPLSSSSPVSHNACSNSNVVMNHQ--QQQQQQ----HHHQQHHHQGSSQ
C3 NSPLSSSSPVSHNACSNSNVVMNHQ---QQQQQ----HHHQQHHHQGSSQ
C4 NSPLSSSSPVSHNACSNSNVVMNHQHQQQQQQQ----HHHQQHHHQGSSQ
C5 NSPLSSSSPVSHNACSNSNVVMNHIQ----QQQ----QQHQPHLHQGSSQ
C6 SSPLSSSSPVSHNACSNSNVVMNHH-----QQQ----HQHQPHLHQGSSQ
C7 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQ----HQHQHHQHQGSSQ
C8 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQ----HHHQQQHLQGSSQ
C9 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQQQQHHHQQQHHLQGSSQ
.*********************** ** :::* : *****
C1 SHTPTTANIPSIIFSDYSSNADYTREIFDSLDLDLGQMDVAGLQMLSDQN
C2 SHTPTTANIPSIIFSDYSSNADYTREIFDSLDLDLGQMDVAGLQMLSDQN
C3 SHTPTTANIPSIIFSDYSSNADFTREIFDSLDLDLGQMDVAGLQMLSDQN
C4 SHTPTTANIPSIIFSDYSSNADFPREIFDSLDLDLGQMDVAGLQMLSDQS
C5 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN
C6 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN
C7 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN
C8 SHTPTTTNIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN
C9 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN
******:***************:.*****:*******************.
C1 PIMIADPNIEDSFRRDLNoooooooooooooooooooooo------
C2 PIMIADPNIEDSFRRDLNooooooooooooooooooooooooo---
C3 PIMIADPNIEDSFRRDLNoooooooooooooooooooooooooo--
C4 PIMIADPNIEDSFRRDLNoooooooooooooooooooooooooooo
C5 PIMIADPNIEDSFRRDLNooooooooooooooooo-----------
C6 PIMIADPNIEDSFRRDLNooooooooooooooo-------------
C7 PIMIADPNIEDSFRRDLNooooooooooooooooooooooooo---
C8 SIMIADANIEDSFRRDLNoooooooooooooooooooo--------
C9 PIMIADPNIEDSFRRDLN----------------------------
.*****.***********
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
gins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 9 SEQUENCES [P 