--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Mon Nov 14 15:23:45 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/216/Crtc-PC/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -8317.33 -8336.49 2 -8317.09 -8333.25 -------------------------------------- TOTAL -8317.21 -8335.83 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/216/Crtc-PC/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 1.039726 0.003197 0.933180 1.150670 1.038607 1473.64 1474.72 1.000 r(A<->C){all} 0.062827 0.000086 0.046185 0.081957 0.062696 911.28 1017.79 1.002 r(A<->G){all} 0.305638 0.000465 0.261799 0.345928 0.305819 890.35 964.76 1.000 r(A<->T){all} 0.137089 0.000314 0.102896 0.170957 0.136548 830.08 925.83 1.000 r(C<->G){all} 0.041803 0.000043 0.030428 0.055768 0.041555 1128.78 1149.98 1.000 r(C<->T){all} 0.377456 0.000577 0.331298 0.423177 0.376858 861.98 988.76 1.000 r(G<->T){all} 0.075186 0.000143 0.051504 0.097981 0.074462 995.44 1202.42 1.000 pi(A){all} 0.247182 0.000066 0.231400 0.262640 0.247175 949.85 1050.19 1.000 pi(C){all} 0.322332 0.000073 0.305216 0.338929 0.322234 944.44 969.77 1.000 pi(G){all} 0.275083 0.000068 0.259260 0.291533 0.274921 1113.20 1177.56 1.000 pi(T){all} 0.155403 0.000040 0.144077 0.168545 0.155206 1063.14 1102.54 1.000 alpha{1,2} 0.127778 0.000104 0.109023 0.149438 0.127319 1440.39 1470.69 1.000 alpha{3} 4.906624 1.136628 2.907462 6.897088 4.784663 1501.00 1501.00 1.000 pinvar{all} 0.354967 0.000779 0.298718 0.407152 0.355908 1371.95 1394.22 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -6969.568605 Model 2: PositiveSelection -6969.568606 Model 0: one-ratio -7061.250838 Model 3: discrete -6964.560527 Model 7: beta -6968.380219 Model 8: beta&w>1 -6964.383596 Model 0 vs 1 183.36446599999908 Model 2 vs 1 1.999998858082108E-6 Model 8 vs 7 7.993245999999999 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Crtc-PC) Pr(w>1) post mean +- SE for w 175 A 0.973* 1.331 176 N 0.747 1.099 183 P 0.676 1.022 210 L 0.971* 1.329 232 L 0.900 1.256 293 Q 0.695 1.044 425 A 0.968* 1.326 435 Q 0.911 1.267 486 P 0.743 1.092 600 Q 0.549 0.893 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_Crtc-PC) Pr(w>1) post mean +- SE for w 172 S 0.554 1.047 +- 0.527 175 A 0.945 1.457 +- 0.191 176 N 0.758 1.283 +- 0.397 183 P 0.775 1.284 +- 0.418 186 P 0.529 0.974 +- 0.584 210 L 0.957* 1.466 +- 0.174 232 L 0.903 1.416 +- 0.267 286 G 0.516 0.959 +- 0.587 293 Q 0.758 1.276 +- 0.411 425 A 0.949 1.460 +- 0.187 435 Q 0.909 1.422 +- 0.257 486 P 0.821 1.331 +- 0.377 500 P 0.535 1.019 +- 0.539 592 S 0.584 1.080 +- 0.519 600 Q 0.639 1.156 +- 0.474
>C1 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQQQQPGQPRSHSP HHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQ QLQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTA LQNYGPQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPFSP AGGGGGAGPGSPYQQQQHSPTGNTQQQQQQHQQPSNSPHLSFTNLATTQA AVTTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPAS PIRQQQQAHQQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNS SPEQQGFANNFVALDFDDLSGGGGGGPSGGGGSNGGGLTNGYNKPEMLDF SELSGSPEASGNNNHMRRGVSNLNNNGLSNGVVGSTHNGSTNLNGAGNNN SSSGGGTAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQHHHHQ QQQQQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNA CSNSNVVMNHQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNA DYTREIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNooo ooooooooooooooooooo >C2 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQPGQPRSHSPHHG INRTMSPQAQRRKSPILQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQLQ QHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTALQNYGPQ QQQQQSQQQQSQQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGGA GPGSPYQQQQHSPTGNTQQQQHQQPSNSPHLSFTNLATTQAAVTTFNPLP TLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAH QQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQGFAN NFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKPEMLDFSELSGSPEA SGNNNHMRRGVSNLNNNGLSNGVVGSTHNGSTNLNGAGNNNSSSGGGTAQ DPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQHHHHQQQQQQHHQQ QHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSNS NVVMNHQQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADYT REIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNoooooo ooooooooooooooooooo >C3 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKIIDGL VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE SRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTAES LWRRSSSDSALHQSALVAGFNSDVNAMGASYQQQQHQQPQQGQPRSHSPH HGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQ LQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTAL QNYGPQQQQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPF SPAGGGGGAGPGSPYQQQHSPTGNTQQQQHQQPSNSPHLSFTNLATTQAA VSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASP IRQQQQVQQQQQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSS PEQQGFANNFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKSEMLDFS ELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSS SGGGTAQDPLGITTSPVPSPLGCPSSPLPIPMSAQSSPQQQHHHHQQQQQ QHHHQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSNS NVVMNHQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADFTR EIFDSLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNooooooo ooooooooooooooooooo >C4 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILDGL VGGQEVSQSSPGAGNGTGGGGSGSGSGASGGGASPDGLGGGGGSPTAYRE SRGRSVGVGPMRRPSERKQDRSPYGSSNTQQTLDNGQLNPHLLGPPTAES LWRRSSSDSALHQSALVAGFNSDVNSMGANYQQQQHQQPQPGQPRSHSPH HGISRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQHQHQLHQQLQMQQ LQQHQQQHQQQQQQQNTPYNNAKFTNPVFRPLQDQVNFANTGSLPDLTAL QNYGPQQPQQQQQQSQQQPSQQQQQLQQTLSPVMSPHNHRRERDQSPSPF SPAGGGGGAGPGSPYQQQHSPTGNTQQQHQQPSNSPHLSFTNLATTQAAV STFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPI RQQQQAQQQQQAQQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQG FANNFVALDFDDLSGGGGGGPGGGGGSNGGGLTNGYNKSEMLDFSELSGS PEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSNSGGGG TAQDPLGITTSPVPSPLGCPSSPLPIPMSAQSSPQQHHHHHQQQQQHHQQ QHHQQQQLSLSLHHSPHHSPLHSPHHGNSPLSSSSPVSHNACSNSNVVMN HQHQQQQQQQHHHQQHHHQGSSQSHTPTTANIPSIIFSDYSSNADFPREI FDSLDLDLGQMDVAGLQMLSDQSPIMIADPNIEDSFRRDLNooooooooo ooooooooooooooooooo >C5 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQNPNQKI LESLVGGQEVSQSSPGAGNGGGSGSGSGASGGGASPDGLGGGGGSPTAYR ESRGRSVGVGPMRRPSERKQDRSPYGSSSGTQQTLDNGQLNPHLLGPPTA ESLWRRSSSDSALHQSALVAGFNADVNSMGGGNYQQQQQHQQQQQSGQTR SHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQQQQMQQQHQHHQL HQQLQMQQLQQHQQQHQQQQQHQQQQTTPYNNAKFANPVFRPLQDQVNFA NTGSLPDLTALQNYGPQQQQQQTQQPQQQLQQTLSPVMSPHNHRRDRDQS PSPFSPAGGGAGPGSPYQQQQHSPTGNTQQQQQQQPSSSPHLSFTNLATT QAAVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAP ASPIRQQQQQVQQQQQQQQQQQQQQQQGHQQFDNSYNSLNTSFHNQFEIF SLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGGNGSNGGGALTNGYNNK QEMLDFSELSGSPEASGNNNHMRRGVSNLNNNNGLSNGVGSTHNGSTNLN GAGNNNGSSGGGSAQDPLGITASPVPSPLGCPSSPLPIPMSAQASPQHQH HHQQQQQQQQHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSS PVSHNACSNSNVVMNHIQQQQQQHQPHLHQGSSQSHTPTTANIPSIIFSD YSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRD LNooooooooooooooooo >C6 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQKILESL VGGPEVSQSSPGAGNGTGGGGGGGSGSGSGASGGGASPDGLGGGGGSPTA YRESRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPT AESLGRRSNSDSALHHSALVAGFNADVNSMGASYQQQHQQQPGQPRSHSP HHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQHQQMQQQHQYQLHQQLQ MQQLQQQQHQQQQQQQQTTPYNNAKFANPVFRPLQDQVNFANTGSLPDLT ALQNYGPQQQQQSQQQQQQQQQQQSQQQQQQLQQTLSPVMSPHNHRRDRD QSPSPFSPAGGGGGGAGPGSPYQQQQHSPTGNTQQQQQQQQQQPSSSPHL SFTNLATTQAAVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSA TDLHSSAPASPIRQQQQAQQQQQQQQQQQQQQGHQQQQQFDNSYNSLNTS FHNQFEIFSLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGSGSNGGLTN GYNKQEMLDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGST NLNGAGNNNSSSGGGSAQDPLGIAASPVPSPLGCPSSPLPIPISAQTSPQ QQQHHHHHQQQQQHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHGSSPLS SSSPVSHNACSNSNVVMNHHQQQHQHQPHLHQGSSQSHTPTTANIPSIIF SDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFR RDLNooooooooooooooo >C7 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPANQKILECL GGGQEVSQSSPGAGNGSGGGGGSGSGSGASGGGASPDGLGGGGGSPTAYR ESRGRSVGVGPMRRPSERKQDRSPYGSSSTQQTLDNGQLNPHLLGPPTTE NSWRRSSSDSALHQSALVAGFNDVNSMGGNYQQQQHQQQQSGQPRSHSPH HGINRTLSPQAQRRKSPILQPHQLQLQQLQQQQQHMQQQHQNQLHQQLQM QQMQQQQQQQQQHQQNTPYNNAKFANPVFRPLQDQVNFANTGSLPDLTAL HTYGPQQQQQSQQQHTQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGG GGGAGPGSPYQQQQHSPTGNTQQQQQQPSSSPHLSFTNLATTQAAVSTFN PLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQ QVQQQQQQQQQQQQQQQTHQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNS SPEQQGFANNFVALDFDDLSGGGGVSGGGNGSNGGGLTNGYNKPDMLDFS ELSGSPESSGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGNNNSS SGGGSGQDPLGIAASPVPSPLGCPSSPLPIPMSAQASPQQHHHHHQQQQQ QHHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHGNSPLSSSSPVSHNACSN SNVVMNHHQQQQQHQHQHHQHQGSSQSHTPTTANIPSIIFSDYSSNADFS REIFDTLDLDLGQMDVAGLQMLSDQNPIMIADPNIEDSFRRDLNoooooo ooooooooooooooooooo >C8 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPANQKILECL GGGHEVSQSSPGSGNGTGGGGGSGSGSGASGGGASPDGLAGGGGGGSPTT YRESRGRSVGVGPMRRPSERKQDRSPYGSSGGTQQTLDNGQLNPHLLGPP TADSLWRRSSSDSALHQTALGAGFDTNVNMMHPNYQPQQHQQQQQQQPGQ PRSHSPHHGINRTMSPQAQRRKSPGLQPPQLQLQQLQQQHQQMQQQHQMH QQLQMQQLHQQQHQQQQQQQTTPYNNAKFANPVFRPLQEQANFANTGSLP DLTALQNYTPQQQQQSQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGG GGGAGPGSPYQQQQHSPTGNTQQQQQQQQQQQQQPSSSPHLSFTNLATTQ ATVSTFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPA SPIRQQQQVQQQQQQQQQQQQQAHQQQQQFDNSYNSLNTSFHNQFEIFSL GDSNSSPEQQGFANNFVALDFDELSGGGGGGSGGGSNGGGLTNGYNKQEM LDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGSTHNGSTNLNGAGN NNSSSGGGSTQDPLGITASPVPSPLGCPSSPLPIPMSAQTSPQQQHHHQH QQQQQQQHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHGNSPLSSSSPVSH NACSNSNVVMNHHQQQQQHHHQQQHLQGSSQSHTPTTTNIPSIIFSDYSS NADFSREIFDTLDLDLGQMDVAGLQMLSDQNSIMIADANIEDSFRRDLNo ooooooooooooooooooo >C9 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPANQKILECL GGVQEVSQSSPGSGNGTGGGGGSGSGSGASGGGASPDGLAGGGGGSPTAY RESRGRSVGVGPMRRPSERKQDRSPYGSSSSTQQTLDNGQLNPHLLGPPT SDNLWRRSSSDSALHQTALGAGFDTNVNSMYQQQQQQQHHQQQQQQQQQP GQTRSHSPHHGINRTMSPQAQRRKSPALQHPQLQLQQLQQQQMQQQHQLH QQLQMQQLQQQQHQQQQQQQQQQQQTTPYNNAKFTNPVFRPLQEQANFAN TGSLPDLTALQNYAPQQQQQIQQQQQQQLQQTLSPVMSPHNHRRERDQSP SPFSPAGGGGGAGPGSPYQQQQHSPTGNTQQQQQQQQPSSSPHLSFTNLA TTQATVATFNPLPTLGPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSS APASPIRQQQQAQQQQQQQQQQQQQAAHQQQQQFDNSYNSLNTSFHNQFE IFSLGDSNSSPEQQGFANNFVALDFDDLSGGGGGGSAGGGGGGGGVGSNG GGLTNGYNKQEMLDFSELSGSPEASGNNNHMRRGVSNLNNNGLSNGVGST HNGSTNLNGAGNNNSSSGGGSTQDPLGITTSPVPSPLGCPSSPLPIPMSA QTSPQQQHNHHHHHHQHQQQQQQHHQQQHHQQQQLSLSLHHSPHHSPMHS PHHGNSPLSSSSPVSHNACSNSNVVMNHHQQQQQQQQHHHQQQHHLQGSS QSHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQ NPIMIADPNIEDSFRRDLN CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=99, Nseq=9, Len=896 C1 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI C2 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI C3 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI C4 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI C5 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVNQNPNQKI C6 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPVN----QKI C7 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDEPPAN----QKI C8 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPAN----QKI C9 MANPRKFSEKIALQKQKQAEGTAEFERIMKEVYATKRDDPPAN----QKI **************************************:**.* *** C1 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG C2 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG C3 IDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG C4 LDGLVGGQEVSQSSPGAGNGTG---GGGSGSGSGASGGGASPDGLGGGGG C5 LESLVGGQEVSQSSPGAGN------GGGSGSGSGASGGGASPDGLGGGGG C6 LESLVGGPEVSQSSPGAGNGTGGGGGGGSGSGSGASGGGASPDGLGGGGG C7 LECLGGGQEVSQSSPGAGNGSG--GGGGSGSGSGASGGGASPDGLGGGGG C8 LECLGGGHEVSQSSPGSGNGTG--GGGGSGSGSGASGGGASPDGLAGGGG C9 LECLGGVQEVSQSSPGSGNGTG--GGGGSGSGSGASGGGASPDGLAGGGG :: * * ********:** ********************.**** C1 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP C2 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP C3 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP C4 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSN-TQQTLDNGQLNP C5 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSSGTQQTLDNGQLNP C6 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP C7 S--PTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSS-TQQTLDNGQLNP C8 GGSPTTYRESRGRSVGVGPMRRPSERKQDRSPYGSSGGTQQTLDNGQLNP C9 G-SPTAYRESRGRSVGVGPMRRPSERKQDRSPYGSSSSTQQTLDNGQLNP . **:******************************. ************ C1 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQQ C2 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQ- C3 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNAMG-ASYQQQQHQQP C4 HLLGPPTAESLWRRSSSDSALHQSALVAGFNSDVNSMG-ANYQQQQHQQP C5 HLLGPPTAESLWRRSSSDSALHQSALVAGFNADVNSMGGGNYQQQQQHQQ C6 HLLGPPTAESLGRRSNSDSALHHSALVAGFNADVNSMG-ASYQQQHQ--- C7 HLLGPPTTENSWRRSSSDSALHQSALVAGFN-DVNSMG-GNYQQQQHQQ- C8 HLLGPPTADSLWRRSSSDSALHQTALGAGFDTNVNMMHPNYQPQQHQQQQ C9 HLLGPPTSDNLWRRSSSDSALHQTALGAGFDTNVNSMYQQQQQQQHHQQQ *******::. ***.******::** ***: :** * **:: C1 -QQ---PGQPRSHSPHHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ C2 ------PGQPRSHSPHHGINRTMSPQAQRRKSPILQPHQLQLQQLQQQQQ C3 -Q----QGQPRSHSPHHGINRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ C4 -Q----PGQPRSHSPHHGISRTMSPQAQRRKSPLLQPHQLQLQQLQQQQQ C5 QQQ---SGQTRSHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQQQ C6 -QQ---PGQPRSHSPHHGINRTLSPQAQRRKSPLLQPHQLQLQQLQQQHQ C7 -QQ---SGQPRSHSPHHGINRTLSPQAQRRKSPILQPHQLQLQQLQQQQQ C8 QQQ---PGQPRSHSPHHGINRTMSPQAQRRKSPGLQPPQLQLQQLQQQHQ C9 QQQQQQPGQTRSHSPHHGINRTMSPQAQRRKSPALQHPQLQLQQLQQQ-- **.*********.**:********** ** ********** C1 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV C2 QMQHQHQL---HQQLQMQQLQQ---HQQQ----QQQQNTPYNNAKFTNPV C3 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV C4 QMQHQHQL---HQQLQMQQLQQ---HQQQHQQQQQQQNTPYNNAKFTNPV C5 QMQQQHQHHQLHQQLQMQQLQQHQQQHQQQQQHQQQQTTPYNNAKFANPV C6 QMQQQHQY-QLHQQLQMQQLQQ--QQHQQQQ--QQQQTTPYNNAKFANPV C7 HMQQQHQN-QLHQQLQMQQMQQ---QQQQQQ--QHQQNTPYNNAKFANPV C8 QMQQQHQM---HQQLQMQQLHQQQHQQQQQQQ-----TTPYNNAKFANPV C9 QMQQQHQL---HQQLQMQQLQQQQHQQQQQQQQQQQQTTPYNNAKFTNPV :**:*** ********::* ::** .********:*** C1 FRPLQDQVNFANTGSLPDLTALQNYGPQQ---QQQQSQQ--------QPS C2 FRPLQDQVNFANTGSLPDLTALQNYGPQQ---QQQQSQQ--------QQS C3 FRPLQDQVNFANTGSLPDLTALQNYGPQQQQQQQQQSQQ--------QPS C4 FRPLQDQVNFANTGSLPDLTALQNYGPQQPQQQQQQSQQ--------QPS C5 FRPLQDQVNFANTGSLPDLTALQNYGPQQ----QQQ-----------QTQ C6 FRPLQDQVNFANTGSLPDLTALQNYGPQQ----QQQSQQQQQQQQQQQSQ C7 FRPLQDQVNFANTGSLPDLTALHTYGPQQ----QQQSQ---------QQH C8 FRPLQEQANFANTGSLPDLTALQNYTPQQ-----QQ-------------Q C9 FRPLQEQANFANTGSLPDLTALQNYAPQQ-----QQQI----------QQ *****:*.**************:.* *** ** C1 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ C2 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ C3 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPY-QQQ C4 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPY-QQQ C5 QPQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGG---AGPGSPYQQQQ C6 QQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGGGAGPGSPYQQQQ C7 TQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGG-AGPGSPYQQQQ C8 SQQQQLQQTLSPVMSPHNHRRDRDQSPSPFSPAGGGGG-AGPGSPYQQQQ C9 QQQQQLQQTLSPVMSPHNHRRERDQSPSPFSPAGGGGG-AGPGSPYQQQQ *******************:************** ******* *** C1 HSPTGNTQQQQQQHQQ------PSNSPHLSFTNLATTQAAVTTFNPLPTL C2 HSPTGNTQQQ--QHQQ------PSNSPHLSFTNLATTQAAVTTFNPLPTL C3 HSPTGNTQQQ--QHQQ------PSNSPHLSFTNLATTQAAVSTFNPLPTL C4 HSPTGNT-QQ--QHQQ------PSNSPHLSFTNLATTQAAVSTFNPLPTL C5 HSPTGNTQQQ--QQQQ------PSSSPHLSFTNLATTQAAVSTFNPLPTL C6 HSPTGNTQQQ--QQQQQQ---QPSSSPHLSFTNLATTQAAVSTFNPLPTL C7 HSPTGNTQQQ--QQQP-------SSSPHLSFTNLATTQAAVSTFNPLPTL C8 HSPTGNTQQQ--QQQQQQQQQQPSSSPHLSFTNLATTQATVSTFNPLPTL C9 HSPTGNTQQQ--QQQQ-----QPSSSPHLSFTNLATTQATVATFNPLPTL ******* ** *:* *.**************:*:******** C1 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAHQQ C2 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAHQQ C3 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ C4 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ C5 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQQVQQ C6 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ C7 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ C8 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQVQQQ C9 GPHNATDYRQPPNPPSPRSSPGLLSSVSATDLHSSAPASPIRQQQQAQQQ ********************************************** ** C1 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C2 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C3 QQQQQQAQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C4 QQ----AQQQQQ------QFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C5 QQQQQQQQQQQQ-QQGHQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C6 QQQQQQQQQQQG-HQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C7 QQQQQQQQQQQQTHQQQQQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C8 QQQQQQQQQQ-AHQQQ-QQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ C9 QQQQQQQQQQAAHQQQ-QQFDNSYNSLNTSFHNQFEIFSLGDSNSSPEQQ ** *** ******************************** C1 GFANNFVALDFDDLSGGGGGGPSGG------GGSNGGG-LTNGYN-KPEM C2 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KPEM C3 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KSEM C4 GFANNFVALDFDDLSGGGGGGPGGG------GGSNGGG-LTNGYN-KSEM C5 GFANNFVALDFDDLSGGG---GGGG------NGSNGGGALTNGYNNKQEM C6 GFANNFVALDFDDLSGGG---GGG-------SGSNGG--LTNGYN-KQEM C7 GFANNFVALDFDDLSGGGGV-SGGG------NGSNGGG-LTNGYN-KPDM C8 GFANNFVALDFDELSGGGGGGSGGG--------SNGGG-LTNGYN-KQEM C9 GFANNFVALDFDDLSGGGGGGSAGGGGGGGGVGSNGGG-LTNGYN-KQEM ************:***** .* **** ****** * :* C1 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNGVVGSTHNGSTNLNGA C2 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNGVVGSTHNGSTNLNGA C3 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA C4 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA C5 LDFSELSGSPEASGNNNHMRRGVSNLNNNNGLSNG-VGSTHNGSTNLNGA C6 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA C7 LDFSELSGSPESSGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA C8 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA C9 LDFSELSGSPEASGNNNHMRRGVSNLNNN-GLSNG-VGSTHNGSTNLNGA ***********:***************** ***** ************** C1 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQ C2 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSSPLPIPIPMSAQSSPQQQ C3 GNNNSSSGGG-TAQDPLGITTSPVPSPLGCPSS--PLPIPMSAQSSPQQQ C4 GNNNSNSGGGGTAQDPLGITTSPVPSPLGCPSS--PLPIPMSAQSSPQQ- C5 GNNNGSSGGG-SAQDPLGITASPVPSPLGCPSS--PLPIPMSAQASPQHQ C6 GNNNSSSGGG-SAQDPLGIAASPVPSPLGCPSS--PLPIPISAQTSPQQQ C7 GNNNSSSGGG-SGQDPLGIAASPVPSPLGCPSS--PLPIPMSAQASPQ-Q C8 GNNNSSSGGG-STQDPLGITASPVPSPLGCPSS--PLPIPMSAQTSPQQQ C9 GNNNSSSGGG-STQDPLGITTSPVPSPLGCPSS--PLPIPMSAQTSPQQQ ****..**** : ******::************ *:***:***:*** C1 H----HHHQQQQQ-----QHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG C2 H----HHHQQQQQQHHQQQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG C3 H----HHHQQQQQ-----QHHHQQHHQQQQLSLSLHHSPHHSPMHSPHHG C4 H----HHHHQQQQ-----QHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHG C5 H----HHQQQQQQQ---QHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHG C6 Q----HHHHHQQQQ---QHHQQQQHHQQQQLSLSLHHSPHHSPMHSPHHG C7 H----HHHHQQQQQ---QHHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG C8 H----HHQHQQQQQ---QQHHQQQHHQQQQLSLSLHHSPHHSPLHSPHHG C9 HNHHHHHHQHQQQQ---QQHHQQQHHQQQQLSLSLHHSPHHSPMHSPHHG : **:::*** :*::*********************:****** C1 NSPLSSSSPVSHNACSNSNVVMNHQ--QQQQQ-----HHHQQHHHQGSSQ C2 NSPLSSSSPVSHNACSNSNVVMNHQ--QQQQQQ----HHHQQHHHQGSSQ C3 NSPLSSSSPVSHNACSNSNVVMNHQ---QQQQQ----HHHQQHHHQGSSQ C4 NSPLSSSSPVSHNACSNSNVVMNHQHQQQQQQQ----HHHQQHHHQGSSQ C5 NSPLSSSSPVSHNACSNSNVVMNHIQ----QQQ----QQHQPHLHQGSSQ C6 SSPLSSSSPVSHNACSNSNVVMNHH-----QQQ----HQHQPHLHQGSSQ C7 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQ----HQHQHHQHQGSSQ C8 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQ----HHHQQQHLQGSSQ C9 NSPLSSSSPVSHNACSNSNVVMNHHQ---QQQQQQQHHHQQQHHLQGSSQ .*********************** ** :::* : ***** C1 SHTPTTANIPSIIFSDYSSNADYTREIFDSLDLDLGQMDVAGLQMLSDQN C2 SHTPTTANIPSIIFSDYSSNADYTREIFDSLDLDLGQMDVAGLQMLSDQN C3 SHTPTTANIPSIIFSDYSSNADFTREIFDSLDLDLGQMDVAGLQMLSDQN C4 SHTPTTANIPSIIFSDYSSNADFPREIFDSLDLDLGQMDVAGLQMLSDQS C5 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN C6 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN C7 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN C8 SHTPTTTNIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN C9 SHTPTTANIPSIIFSDYSSNADFSREIFDTLDLDLGQMDVAGLQMLSDQN ******:***************:.*****:*******************. C1 PIMIADPNIEDSFRRDLNoooooooooooooooooooooo------ C2 PIMIADPNIEDSFRRDLNooooooooooooooooooooooooo--- C3 PIMIADPNIEDSFRRDLNoooooooooooooooooooooooooo-- C4 PIMIADPNIEDSFRRDLNoooooooooooooooooooooooooooo C5 PIMIADPNIEDSFRRDLNooooooooooooooooo----------- C6 PIMIADPNIEDSFRRDLNooooooooooooooo------------- C7 PIMIADPNIEDSFRRDLNooooooooooooooooooooooooo--- C8 SIMIADANIEDSFRRDLNoooooooooooooooooooo-------- C9 PIMIADPNIEDSFRRDLN---------------------------- .*****.*********** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [PROTEIN] Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 819 type PROTEIN Struct Unchecked Input File /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 819 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/216/Crtc-PC/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 9 SEQUENCES [P