--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Sat Nov 12 05:40:39 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/210/cnc-PN/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -11000.96 -11015.78 2 -11000.94 -11014.14 -------------------------------------- TOTAL -11000.95 -11015.27 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.743214 0.001339 0.668593 0.810197 0.742612 1236.53 1262.31 1.000 r(A<->C){all} 0.075780 0.000081 0.059359 0.093864 0.075425 817.04 926.82 1.000 r(A<->G){all} 0.193732 0.000245 0.165881 0.226511 0.193278 777.31 839.03 1.000 r(A<->T){all} 0.126518 0.000222 0.095360 0.153322 0.126452 961.14 1128.13 1.000 r(C<->G){all} 0.050430 0.000036 0.038955 0.062094 0.050105 597.25 840.85 1.000 r(C<->T){all} 0.477864 0.000476 0.434897 0.520176 0.478081 760.48 805.29 1.001 r(G<->T){all} 0.075677 0.000094 0.056058 0.093195 0.075392 1214.72 1234.12 1.000 pi(A){all} 0.230747 0.000044 0.217901 0.243763 0.230766 1069.65 1131.71 1.000 pi(C){all} 0.312634 0.000053 0.297832 0.326129 0.312422 1023.30 1112.57 1.000 pi(G){all} 0.286926 0.000051 0.273769 0.301282 0.286975 1253.06 1303.84 1.000 pi(T){all} 0.169693 0.000033 0.158371 0.180728 0.169541 814.53 882.54 1.000 alpha{1,2} 0.171336 0.000249 0.141706 0.201894 0.170640 1081.37 1176.89 1.000 alpha{3} 4.170921 0.980595 2.308013 6.081888 4.065891 1309.87 1405.43 1.000 pinvar{all} 0.366792 0.000880 0.308708 0.423098 0.368333 1215.73 1254.44 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -10122.727968 Model 2: PositiveSelection -10122.727968 Model 0: one-ratio -10211.760719 Model 3: discrete -10114.85887 Model 7: beta -10116.145992 Model 8: beta&w>1 -10115.442768 Model 0 vs 1 178.0655020000013 Model 2 vs 1 0.0 Model 8 vs 7 1.4064479999979085
>C1 MIDLEDLPRLQSLSPAKDIEYTYHQTQLQLNPKKKVTVRVPIGPPSKLSK LIKPTVASTPAVLAKPTPSITQSTTPGNAKTNIWKGGFHFTNLESEIAEV LYKQDVDLGFSLDQEAIINASYASGNSAATNVKSKPEDETKSSDPSISES SGFKDTDVNAENEASAASVDDIEKLKALEELQQDKDKNNENQLEDITNEW NGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLQDDLSNDPVASTSQAA AAFNENQAQRIVSETGEDLLSGEGISSKQNRNEAKNKDNDPEKADGDSFS VSDFEELQNSVGSPLFDLDEDAKKELDEMLQSAVPSYHHPHPHHGHPHAH PHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVGVGVGSG TGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSPIPSMVG GVSDMSPYPHHYPGYSYQASPSNGAPGTPGQHGQYGSGANATLQPPPPPP PPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSMHLTNSSHEADGA AAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDMNESFCR MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKEooooooooooooooooo ooo >C2 MIDLEDLPRLQSLSPAKDIEDTYHQTLLQPNPKKKVTVRVPIGPPSKLAK LIKPTVASTPALLATPTPASLETPPTPQSTTPGNAKTNIWRGGFHFTTLE SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAASNAKSKPEDEAKSSD PSMSESSGFKDNDVNAENEASAASADDIEKLKALEELQQDKDKDNENPLE DISNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLTEFPLEDELSNDPVA STSQAAAAFNENQAQRIVSETGEDFLSGEGISSGEAKNKDNDPEKADGDS FSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHHGHPH AHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVGVGVG SGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSPIPSM VGGVSDMSPYPHHYPGYSYQASPSNVAPGTPGQHGQYGSGANASLQPPPP PPPHHAAMLHHPNAAALGDICPTGQPHYGHNLGSAVTSSMHLTNSSHEAD GAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDMNESF CRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGV GPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERV PSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKK HQLYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASG GISEPGAMGPALSKDYHHHQAYGMGASGSAFSGDYTVRPSPRTSQDLVQL NHTYSLPQGSGSLPRPQARDKKPLVATKTASKGTSAGNSSSVGGNSSSLE EEHLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRD IRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESER KRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSE GNNTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQ QQQQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKEooooooooooooooo ooo >C3 MIDLEDLPRLQSLSPAKDIEDTYHQIQLQTPNPKKKVTVRVPIGPPSKLA KLIKPTVASTPAVLATPTPASLETPPTPQSTDPGNANAKSNIWRGGFHFT TLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSGATNAKSKLEDEAK SSDPSMSESSGYKDTNVSAENEATAASADDIEKLKALEELQQDKDKDNEN PLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSDD PVASTSQAAAAFNENQAQRIVSETGEDFLSGDGVPSKQRRIGAESNKDNE PEKADGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHP HPHHGHHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGV GVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRSVSMERLQD FATYFSPIPSMVGGVSDMSPYPHHYPGYSYQASPSNGAPGTAGQHGQYGS GATATLQPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSM HLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDED LHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHG NQANGATGGVGPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDS AVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTA TRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAAQSHSIKYEYDA GYASSGMASGGISEPGAMGPALSKDYHHHQAYGMGASGSAFSGDYTVRPS PRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGNSS SVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDL SENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLN QDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGS VYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQA QHVVGGMSQQQQQQQSRLPPHLQQQQQHHLQSQQQQPGGQQQQQHRKEoo ooo >C4 MINLEDLPRLQSLSPAKDIEDTYHQTQLQLPNPKKKVTVRVPIGPPSKLA KLIKPTVASTPAVLATPTPASLQTPPTPQSTTPGSAKTNIWRGGFHFTTL ESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSAATNAKSKLEDEAKSS DPSMSESSGIKDTDVNGENEVSAASSDDIEKLKALEELQQDKDKDNENPL EDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPV ASTSQAAAAFNENQAQRTVSETGEDFLSGEGISSKQRRIGAENKDNESER TDGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPH PHHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV GVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRSVSMERLQD FATYFSPIPSMVGGVSDMSPYPHHHYPGYSYQASPSNGAPGTPGQHGQYG SGATASLQPPPPPPPPHHAAMLQHPNAALGDICPTGQPHYGHNLGSAVTS SMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFMNSIFTD EDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNP HGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASS DSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLS TATRQPPVAQKKHQLYGKRDPHKQAPSALPPTAPPAAATAVQSQSIKYEY DAGYASSGMASGGISEPGAMGPALSKDYHHQAYGMGASGSAFSGDYTVRP SPRSSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGNS SSVGGNSTMEEEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDL SENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLN QDREHFESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGS VYLLPREKSEGNNSATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQA QHVVGGMPQQQQQQQQSRLPPHLQQQQQQQQQHHLQSQQQQPGGQQQQQH RKE >C5 MIDLEDLPRLQSLSPCKDIEDNYHQTQLQPNPKKAVTVRVPIGPPSKLAK LIKPTVASTPAILATPTAASLETPPTPQSTTPGNAKNPIWRGGFHFNNLE SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLEDEAKSSD PSMSESGVSKDTNVNAENEAGGASADDIEKLKALEELQQDKDKDNENPLE DITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPVA STSQAAAALNENQAQRIVSETGEDFLGAEGVPSKQRRIGAENKDNDPEKA DDDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHH GHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVG VGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSP IPSMVGGVSDMSPYPHHYPGYSYQASPSNGAAGPAPGQHGQYGSGAAAPL QPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVSSSMHLTNSS HEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDM NESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGA AGGVGPMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAVSSMG SERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPV AQKKHQLYGKRDPHKQTPSALPPTVPPTTATAAQSQSIKYEYDAGYASSG MASGGISEPGAMGPALTKDYHHHQAYGMGASGSSFSGDYTVRPSPRTSQD LVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTTSKGTSAGGSSSSAGGS SSSLEDEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSENQL SLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDH LEGERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLP REKSEGNSTATAASNAVSSAGAGSLNGHVPPQAPMHGHHSQHGMQAQHVG SGMSQQQQQQQSRLPPHLQQQQQHLLQSQQQQPGGQQQQQHRKEoooooo ooo >C6 MIDLEDLPRLQSLSPAKDIEDTYNQTQLQPSPKKKVTVTVRVPIGPPSKL AKLIKPTVASTPAVLATPTPASLETPPTPQSTLPGNAKSNIWRGGFHFNT MESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATSAKSKLGDEAKS ADPSMSESSGSKDPNVGAENGATGASADDIEKLKALEELQQDKDKDNENP LEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSELSNLDELSDDP VASTSQAAAALNENQAQRIVSETGEDFLGCEGVPSKQRRLGAEDKETDPE KADGGDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPH PHHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV GVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATY FSPIPSMVGGVSDMSPYPHHYPGYSYQAAPSNGAPGTAGQHGQYGSGASA PLQPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVSSSMHLTN SSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLM DMNESFCRMVDNSTSNNSSVLGLPSSGHVSSGSGSSAQLGTGNPHGNQAN GAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAVSS MGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQP PVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAVQSQNIKYEYDAGYAS SGMASGGISEPGAMGPALTKDYHHHQAYGMGASGSAFSGDYTVRPSPRTS QDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGTSAGSSSSAGG SSSSMEEEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSENQ LSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRD HLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLL PREKSEGNSTATAASNAVSSAGGGSLNGHVPAQAPMHGLHSQHGMQAQHV GSGMSQQQQQQSRLPPHLQQQQQHLLQSQQQQPEGQQQQQHRKEoooooo ooo >C7 MIDLEDLPRLQSLSPAKDIEDTYHQTQLQPNPKKKVTVRVPIGPPSKLAK LIKPTVASTPAILTTPTPTPASLETPPTPTSTTTSGNAKNIWRGGFHFTT LESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNAKSKLEDEIKS SDPSISESSGYKDTNVSGENEASGASADDIEKLKALEELQQDKDKDNENP LEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELTNDP VASTSQAAAALNENQAQRVVSETGEDFLSGEVVPNKRGRVGVEDKDNDPE KADGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHP HHGHHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV GVGVGVGVGSGTGSAFQRQPAASGFHHGHHQGRMTRLNRSVSMERLQDFA TYFSPIPSMVGGVSDMSPYPHHYPGYSYQASPSNGAPGTPGQHGQYGSGA TAALQPPPPPPPHHAAMLHHPNAPLGDICPTGQPHYGHNLGSAVTSSMHL TNSSHEADGAAAAAAAYKVEHDLMYYSNTSSDINQTDGFINSIFTDEDLH LMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAHLGAGNPHGNQ ANGAAGGVNSMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAV SSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATR QPPVAQKKHQLYGKRDPHKQTPSALPPTVPPAAATAVQSQNIKYEYDAGY ASSGMASSGISEPGAMGPALTKDYHHHQAYGMGASGSTFSADYNVRPSPR TSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGSSSSA GGSSSNMEDEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSE NQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQD RDHLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVY LLPREKSEGNSTATAASNAVSSASGGSLNGHLPTQAPMHGHHGQHGMQAQ HVGSGMSQQQQSRLPPHLQQQQQQQHHLQSQQQQPGGQQQQQHRKEoooo ooo >C8 MIDLEDLPRLQSLSPAKDIEDTYRQTQLQPNPKKKVTVRVPIGPPSKLTK LIKPTVASTPSILATPTPSSLETPPTPQTTTPGDAKTPIWRGGFLFAIPE SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLEDEAKSSD PSMSDTGASKDPNVSAENEASSASAEDLEKLKALEELRQDKEKDNENPLE DITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPVP STSQAAAALNENQALRIVSETGEDFLSGEGIPNKQRKVGDKDKDTDPEKG EGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHH GHPHAHPHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVG VGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYF SPIPSMVGGVSEMSPYPHHYPSYSYQASPSNGAPAPGQHGQYGSGAAAPL QPPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSMHLTNS SHEADSAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFADEDLHLMD MNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLAAGNPHGNQVNG AASGVGPMSGSVVGTGAAGMTADLLASGGAGAQGGTDRLDASSDSAVSSM GSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPP VAQKKHQLYGKRDPHKQAPSAVPPTAPTAASTAVQSQSIKYEYDAGYASS GMASGGVASEPGAMGPALTKDYHHHQAYGMGASGSTFSGDYTVRPSPRTS QDLVQLNHTYSLPQGSGSLPRPQVRDKKPLVATKTASKGTSAGSSSSGAG GSSGNLEDEHLTRDEKRARSLNIPISVHDIINLPMDEFNERLSKYDLSEN QLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVHAVVKRKSQLNQER DHLDSERKRISNKFAMLHRHVFQYLRDPEGNPCSPSDYSLQQAADGSVYL LPREKPEGNSTATSASSAVSAVAGSLSGHVPSQAPMHGHHSQHGMQAQHV GSGMSQQQQQQQSRLPPHLQQQQQQQHHLQSQQQQPGGQQQQHRKEoooo ooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1188 C1 MIDLEDLPRLQSLSPAKDIEYTYHQTQLQL-NPKKK--VTVRVPIGPPSK C2 MIDLEDLPRLQSLSPAKDIEDTYHQTLLQP-NPKKK--VTVRVPIGPPSK C3 MIDLEDLPRLQSLSPAKDIEDTYHQIQLQTPNPKKK--VTVRVPIGPPSK C4 MINLEDLPRLQSLSPAKDIEDTYHQTQLQLPNPKKK--VTVRVPIGPPSK C5 MIDLEDLPRLQSLSPCKDIEDNYHQTQLQP-NPKK--AVTVRVPIGPPSK C6 MIDLEDLPRLQSLSPAKDIEDTYNQTQLQP-SPKKKVTVTVRVPIGPPSK C7 MIDLEDLPRLQSLSPAKDIEDTYHQTQLQP-NPKKK--VTVRVPIGPPSK C8 MIDLEDLPRLQSLSPAKDIEDTYRQTQLQP-NPKKK--VTVRVPIGPPSK **:************.**** .*.* ** .*** ************ C1 LSKLIKPTVASTPAVLAKP--TPS------ITQSTTPG--NAKTNIWKGG C2 LAKLIKPTVASTPALLATP--TPASLETPPTPQSTTPG--NAKTNIWRGG C3 LAKLIKPTVASTPAVLATP--TPASLETPPTPQSTDPGNANAKSNIWRGG C4 LAKLIKPTVASTPAVLATP--TPASLQTPPTPQSTTPG--SAKTNIWRGG C5 LAKLIKPTVASTPAILATP--TAASLETPPTPQSTTPG--NAKNPIWRGG C6 LAKLIKPTVASTPAVLATP--TPASLETPPTPQSTLPG--NAKSNIWRGG C7 LAKLIKPTVASTPAILTTPTPTPASLETPPTPTSTTTS--GNAKNIWRGG C8 LTKLIKPTVASTPSILATP--TPSSLETPPTPQTTTPG--DAKTPIWRGG *:***********::*:.* *.: . :* .. . . **:** C1 FHFTNLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNVKSKPE C2 FHFTTLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAASNAKSKPE C3 FHFTTLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSGATNAKSKLE C4 FHFTTLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSAATNAKSKLE C5 FHFNNLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLE C6 FHFNTMESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATSAKSKLG C7 FHFTTLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNAKSKLE C8 FLFAIPESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLE * * ***********************:**********.*:..*** C1 DETKSSDPSISESSGFKDTDVNAENEASAASVDDIEKLKALEELQQDKDK C2 DEAKSSDPSMSESSGFKDNDVNAENEASAASADDIEKLKALEELQQDKDK C3 DEAKSSDPSMSESSGYKDTNVSAENEATAASADDIEKLKALEELQQDKDK C4 DEAKSSDPSMSESSGIKDTDVNGENEVSAASSDDIEKLKALEELQQDKDK C5 DEAKSSDPSMSESGVSKDTNVNAENEAGGASADDIEKLKALEELQQDKDK C6 DEAKSADPSMSESSGSKDPNVGAENGATGASADDIEKLKALEELQQDKDK C7 DEIKSSDPSISESSGYKDTNVSGENEASGASADDIEKLKALEELQQDKDK C8 DEAKSSDPSMSDTGASKDPNVSAENEASSASAEDLEKLKALEELRQDKEK ** **:***:*::. ** :*..** . .** :*:*********:***:* C1 NNENQLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLQDD C2 DNENPLEDISNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLTEFPLEDE C3 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE C4 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE C5 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE C6 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSELSNLDE C7 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE C8 DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE :*** ****:********************************:*:. *: C1 LSNDPVASTSQAAAAFNENQAQRIVSETGEDLLSGEGISSKQNRNEAK-N C2 LSNDPVASTSQAAAAFNENQAQRIVSETGEDFLSGEGISS----GEAK-N C3 LSDDPVASTSQAAAAFNENQAQRIVSETGEDFLSGDGVPSKQRRIGAESN C4 LSNDPVASTSQAAAAFNENQAQRTVSETGEDFLSGEGISSKQRRIGAE-N C5 LSNDPVASTSQAAAALNENQAQRIVSETGEDFLGAEGVPSKQRRIGAE-N C6 LSDDPVASTSQAAAALNENQAQRIVSETGEDFLGCEGVPSKQRRLGAE-D C7 LTNDPVASTSQAAAALNENQAQRVVSETGEDFLSGEVVPNKRGRVGVE-D C8 LSNDPVPSTSQAAAALNENQALRIVSETGEDFLSGEGIPNKQRKVGDK-D *::***.********:***** * *******:*. : :.. : : C1 KDNDPEKADG-DSFSVSDFEELQNSVGSPLFDLDEDAKKELDEMLQSAVP C2 KDNDPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C3 KDNEPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C4 KDNESERTDG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C5 KDNDPEKADD-DSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C6 KETDPEKADGGDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C7 KDNDPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP C8 KDTDPEKGEG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP *:.:.*: :. *****.***:**************************:.* C1 SYHHPHP--HHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY C2 PYHHPHP--HHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY C3 PYHHPHPHHGH-HPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY C4 PYHHPHPHPHHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY C5 PYHHPHP--HHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY C6 PYHHPHP--HHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY C7 PYHHPHP-HHGHHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY C8 PYHHPHPHHGHPHAHPHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY .****** *.*.********:************************* C1 GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS C2 GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS C3 GG--GVGVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRS C4 GGGVGVGVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRS C5 GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS C6 GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS C7 GG--GVGVGVGVGVGVGVGSGTGSAFQRQPAASGFHHGHHQGRMTRLNRS C8 GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS ** **************************.********.**.***** C1 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG- C2 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNVAPG- C3 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG- C4 VSMERLQDFATYFSPIPSMVGGVSDMSPYPHHHYPGYSYQASPSNGAPG- C5 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAAGP C6 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQAAPSNGAPG- C7 VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG- C8 VSMERLQDFATYFSPIPSMVGGVSEMSPYP-HHYPSYSYQASPSNGAPA- ************************:***** ****.*****:*** *.. C1 TPGQHGQYGSGANATLQPPPPPPPPHHAAMLHHPN-AALGDICPTGQPHY C2 TPGQHGQYGSGANASLQPPPPPPP-HHAAMLHHPNAAALGDICPTGQPHY C3 TAGQHGQYGSGATATLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY C4 TPGQHGQYGSGATASLQPPPPPPPPHHAAMLQHPN-AALGDICPTGQPHY C5 APGQHGQYGSGAAAPLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY C6 TAGQHGQYGSGASAPLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY C7 TPGQHGQYGSGATAALQPPPPPPP-HHAAMLHHPN-APLGDICPTGQPHY C8 -PGQHGQYGSGAAAPLQPPPPPPPPHHAAMLHHPN-AALGDICPTGQPHY .********** *.********* ******:*** *.************ C1 GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C2 GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C3 GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C4 GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C5 GHNLGSAVSSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C6 GHNLGSAVSSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT C7 GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYSNTSSDINQT C8 GHNLGSAVTSSMHLTNSSHEADSAAAAAAAYKVEHDLMYYGNTSSDINQT ********:*************.*****************.********* C1 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C2 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C3 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C4 DGFMNSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C5 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C6 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSSGSG C7 DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG C8 DGFINSIFADEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG ***:****:*************************************.*** C1 SSAQLGAGNPHGNQANGASGGVGSMSGSAVGAGATGMTADLLASGGAGAQ C2 SSAQLGAGNPHGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQ C3 SSAQLGAGNPHGNQANGATGGVGPMSGSAVGAGATGMTADLLASGGAGAQ C4 SSAQLGAGNPHGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQ C5 SSAQLGAGNPHGNQANGAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQ C6 SSAQLGTGNPHGNQANGAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQ C7 SSAHLGAGNPHGNQANGAAGGVNSMSGSAVGTGAAGMTADLLASGGAGAQ C8 SSAQLAAGNPHGNQVNGAASGVGPMSGSVVGTGAAGMTADLLASGGAGAQ ***:*.:*******.***:.**..****.**:**:*************** C1 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C2 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C3 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C4 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C5 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C6 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C7 GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD C8 GGTDRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD **:*********************************************** C1 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA C2 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA C3 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA C4 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQAPSALPPTAPPAAATA C5 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTVPPTTATA C6 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA C7 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTVPPAAATA C8 FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQAPSAVPPTAPTAASTA **********************************:***:***.*.:::** C1 VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQPYGMGAS C2 VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQAYGMGAS C3 AQSHSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQAYGMGAS C4 VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHH-QAYGMGAS C5 AQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALTKDYHHHQAYGMGAS C6 VQSQNIKYEYDAGYASSGMASGGIS-EPGAMGPALTKDYHHHQAYGMGAS C7 VQSQNIKYEYDAGYASSGMASSGIS-EPGAMGPALTKDYHHHQAYGMGAS C8 VQSQSIKYEYDAGYASSGMASGGVASEPGAMGPALTKDYHHHQAYGMGAS .**:.****************.*:: *********:***** *.****** C1 GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C2 GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C3 GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C4 GSAFSGDYTVRPSPRSSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C5 GSSFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C6 GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C7 GSTFSADYNVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT C8 GSTFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQVRDKKPLVAT **:**.**.******:************************.********* C1 KTASKGASAG-NSSSVGGNSSNLEEEHLTRDEKRARSLNIPISVPDIINL C2 KTASKGTSAG-NSSSVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINL C3 KTASKGSSAG-NSSSVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINL C4 KTASKGSSAG-NSSSVGGNS-TMEEEHLTRDEKRARSLNIPISVQDIINL C5 KTTSKGTSAGGSSSSAGGSSSSLEDEHLTRDEKRARSLNIPISVQDIINL C6 KTASKGTSAG-SSSSAGGSSSSMEEEHLTRDEKRARSLNIPISVQDIINL C7 KTASKGSSAG-SSSSAGGSSSNMEDEHLTRDEKRARSLNIPISVQDIINL C8 KTASKGTSAGSSSSGAGGSSGNLEDEHLTRDEKRARSLNIPISVHDIINL **:***:*** .**..**.* .:*:******************* ***** C1 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C2 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C3 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C4 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C5 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C6 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C7 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE C8 PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE ************************************************** C1 DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC C2 DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC C3 DEVNAVVKRKTQLNQDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPC C4 DEVNAVVKRKTQLNQDREHFESERKRISNKFAMLHRHVFQYLRDPEGNPC C5 DEVNAVVKRKTQLNQDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPC C6 DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC C7 DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC C8 DEVHAVVKRKSQLNQERDHLDSERKRISNKFAMLHRHVFQYLRDPEGNPC ***:******:****:*:*::.**************************** C1 SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT C2 SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT C3 SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT C4 SPADYSLQQAADGSVYLLPREKSEGNNSATAASNAVSSASGGSLNGHVPT C5 SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSAGAGSLNGHVPP C6 SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSAGGGSLNGHVPA C7 SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSASGGSLNGHLPT C8 SPSDYSLQQAADGSVYLLPREKPEGNSTATSASSAVSAVAG-SLSGHVPS **:*******************.***.:**:**.***:... **.**:*. C1 QAPMHSHQ-SHGMQAQHVVGGMSQQQ--QQQSRLPPHLQ------QQHHL C2 QAPMHSHQ-SHGMQAQHVVGGMSQQQ--QQQSRLPPHLQ------QQHHL C3 QAPMHSHQ-SHGMQAQHVVGGMSQQQQQQQ-SRLPPHLQQQQQ----HHL C4 QAPMHSHQ-SHGMQAQHVVGGMPQQQQQQQQSRLPPHLQQQQQQQQQHHL C5 QAPMHGHHSQHGMQAQHVGSGMSQQQ-QQQQSRLPPHLQQQ----QQHLL C6 QAPMHGLHSQHGMQAQHVGSGMSQQQ-QQQ-SRLPPHLQQQ----QQHLL C7 QAPMHGHHGQHGMQAQHVGSGMSQQQ----QSRLPPHLQQQQQ--QQHHL C8 QAPMHGHHSQHGMQAQHVGSGMSQQQ-QQQQSRLPPHLQQQQQ--QQHHL *****. : .******** .**.*** ******** * * C1 QSQQQQPGGQQQQQHRKEoooooooooooooooooooo C2 QSQQQQPGGQQQQQHRKEoooooooooooooooooo-- C3 QSQQQQPGGQQQQQHRKEooooo--------------- C4 QSQQQQPGGQQQQQHRKE-------------------- C5 QSQQQQPGGQQQQQHRKEooooooooo----------- C6 QSQQQQPEGQQQQQHRKEooooooooo----------- C7 QSQQQQPGGQQQQQHRKEooooooo------------- C8 QSQQQQPGGQQQQ-HRKEooooooo------------- ******* ***** **** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 8 SEQUENCES [PROTEIN] Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fas