--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Sat Nov 12 05:40:39 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/210/cnc-PN/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1     -11000.96        -11015.78
2     -11000.94        -11014.14
--------------------------------------
TOTAL   -11000.95        -11015.27
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/210/cnc-PN/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.743214    0.001339    0.668593    0.810197    0.742612   1236.53   1262.31    1.000
r(A<->C){all}   0.075780    0.000081    0.059359    0.093864    0.075425    817.04    926.82    1.000
r(A<->G){all}   0.193732    0.000245    0.165881    0.226511    0.193278    777.31    839.03    1.000
r(A<->T){all}   0.126518    0.000222    0.095360    0.153322    0.126452    961.14   1128.13    1.000
r(C<->G){all}   0.050430    0.000036    0.038955    0.062094    0.050105    597.25    840.85    1.000
r(C<->T){all}   0.477864    0.000476    0.434897    0.520176    0.478081    760.48    805.29    1.001
r(G<->T){all}   0.075677    0.000094    0.056058    0.093195    0.075392   1214.72   1234.12    1.000
pi(A){all}      0.230747    0.000044    0.217901    0.243763    0.230766   1069.65   1131.71    1.000
pi(C){all}      0.312634    0.000053    0.297832    0.326129    0.312422   1023.30   1112.57    1.000
pi(G){all}      0.286926    0.000051    0.273769    0.301282    0.286975   1253.06   1303.84    1.000
pi(T){all}      0.169693    0.000033    0.158371    0.180728    0.169541    814.53    882.54    1.000
alpha{1,2}      0.171336    0.000249    0.141706    0.201894    0.170640   1081.37   1176.89    1.000
alpha{3}        4.170921    0.980595    2.308013    6.081888    4.065891   1309.87   1405.43    1.000
pinvar{all}     0.366792    0.000880    0.308708    0.423098    0.368333   1215.73   1254.44    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-10122.727968
Model 2: PositiveSelection	-10122.727968
Model 0: one-ratio	-10211.760719
Model 3: discrete	-10114.85887
Model 7: beta	-10116.145992
Model 8: beta&w>1	-10115.442768


Model 0 vs 1	178.0655020000013

Model 2 vs 1	0.0

Model 8 vs 7	1.4064479999979085
>C1
MIDLEDLPRLQSLSPAKDIEYTYHQTQLQLNPKKKVTVRVPIGPPSKLSK
LIKPTVASTPAVLAKPTPSITQSTTPGNAKTNIWKGGFHFTNLESEIAEV
LYKQDVDLGFSLDQEAIINASYASGNSAATNVKSKPEDETKSSDPSISES
SGFKDTDVNAENEASAASVDDIEKLKALEELQQDKDKNNENQLEDITNEW
NGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLQDDLSNDPVASTSQAA
AAFNENQAQRIVSETGEDLLSGEGISSKQNRNEAKNKDNDPEKADGDSFS
VSDFEELQNSVGSPLFDLDEDAKKELDEMLQSAVPSYHHPHPHHGHPHAH
PHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVGVGVGSG
TGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSPIPSMVG
GVSDMSPYPHHYPGYSYQASPSNGAPGTPGQHGQYGSGANATLQPPPPPP
PPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSMHLTNSSHEADGA
AAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDMNESFCR
MVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGVGS
MSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERVPS
LSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKKHQ
LYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASGGI
SEPGAMGPALSKDYHHHQPYGMGASGSAFSGDYTVRPSPRTSQDLVQLNH
TYSLPQGSGSLPRPQARDKKPLVATKTASKGASAGNSSSVGGNSSNLEEE
HLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRDIR
RRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESERKR
ISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSEGN
NTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQQQ
QQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKEooooooooooooooooo
ooo
>C2
MIDLEDLPRLQSLSPAKDIEDTYHQTLLQPNPKKKVTVRVPIGPPSKLAK
LIKPTVASTPALLATPTPASLETPPTPQSTTPGNAKTNIWRGGFHFTTLE
SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAASNAKSKPEDEAKSSD
PSMSESSGFKDNDVNAENEASAASADDIEKLKALEELQQDKDKDNENPLE
DISNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLTEFPLEDELSNDPVA
STSQAAAAFNENQAQRIVSETGEDFLSGEGISSGEAKNKDNDPEKADGDS
FSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHHGHPH
AHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVGVGVG
SGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSPIPSM
VGGVSDMSPYPHHYPGYSYQASPSNVAPGTPGQHGQYGSGANASLQPPPP
PPPHHAAMLHHPNAAALGDICPTGQPHYGHNLGSAVTSSMHLTNSSHEAD
GAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDMNESF
CRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGASGGV
GPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDSAVSSMGSERV
PSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPVAQKK
HQLYGKRDPHKQTPSALPPTAPPAAATAVQSQSIKYEYDAGYASSGMASG
GISEPGAMGPALSKDYHHHQAYGMGASGSAFSGDYTVRPSPRTSQDLVQL
NHTYSLPQGSGSLPRPQARDKKPLVATKTASKGTSAGNSSSVGGNSSSLE
EEHLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDLSENQLSLIRD
IRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDHLESER
KRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLPREKSE
GNNTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQAQHVVGGMSQQ
QQQQSRLPPHLQQQHHLQSQQQQPGGQQQQQHRKEooooooooooooooo
ooo
>C3
MIDLEDLPRLQSLSPAKDIEDTYHQIQLQTPNPKKKVTVRVPIGPPSKLA
KLIKPTVASTPAVLATPTPASLETPPTPQSTDPGNANAKSNIWRGGFHFT
TLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSGATNAKSKLEDEAK
SSDPSMSESSGYKDTNVSAENEATAASADDIEKLKALEELQQDKDKDNEN
PLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSDD
PVASTSQAAAAFNENQAQRIVSETGEDFLSGDGVPSKQRRIGAESNKDNE
PEKADGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHP
HPHHGHHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGV
GVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRSVSMERLQD
FATYFSPIPSMVGGVSDMSPYPHHYPGYSYQASPSNGAPGTAGQHGQYGS
GATATLQPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSM
HLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDED
LHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHG
NQANGATGGVGPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASSDS
AVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTA
TRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAAQSHSIKYEYDA
GYASSGMASGGISEPGAMGPALSKDYHHHQAYGMGASGSAFSGDYTVRPS
PRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGNSS
SVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINLPMDEFNERLSKYDL
SENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLN
QDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGS
VYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQA
QHVVGGMSQQQQQQQSRLPPHLQQQQQHHLQSQQQQPGGQQQQQHRKEoo
ooo
>C4
MINLEDLPRLQSLSPAKDIEDTYHQTQLQLPNPKKKVTVRVPIGPPSKLA
KLIKPTVASTPAVLATPTPASLQTPPTPQSTTPGSAKTNIWRGGFHFTTL
ESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSAATNAKSKLEDEAKSS
DPSMSESSGIKDTDVNGENEVSAASSDDIEKLKALEELQQDKDKDNENPL
EDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPV
ASTSQAAAAFNENQAQRTVSETGEDFLSGEGISSKQRRIGAENKDNESER
TDGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPH
PHHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV
GVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRSVSMERLQD
FATYFSPIPSMVGGVSDMSPYPHHHYPGYSYQASPSNGAPGTPGQHGQYG
SGATASLQPPPPPPPPHHAAMLQHPNAALGDICPTGQPHYGHNLGSAVTS
SMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFMNSIFTD
EDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNP
HGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQGGADRLDASS
DSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLS
TATRQPPVAQKKHQLYGKRDPHKQAPSALPPTAPPAAATAVQSQSIKYEY
DAGYASSGMASGGISEPGAMGPALSKDYHHQAYGMGASGSAFSGDYTVRP
SPRSSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGNS
SSVGGNSTMEEEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDL
SENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLN
QDREHFESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGS
VYLLPREKSEGNNSATAASNAVSSASGGSLNGHVPTQAPMHSHQSHGMQA
QHVVGGMPQQQQQQQQSRLPPHLQQQQQQQQQHHLQSQQQQPGGQQQQQH
RKE
>C5
MIDLEDLPRLQSLSPCKDIEDNYHQTQLQPNPKKAVTVRVPIGPPSKLAK
LIKPTVASTPAILATPTAASLETPPTPQSTTPGNAKNPIWRGGFHFNNLE
SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLEDEAKSSD
PSMSESGVSKDTNVNAENEAGGASADDIEKLKALEELQQDKDKDNENPLE
DITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPVA
STSQAAAALNENQAQRIVSETGEDFLGAEGVPSKQRRIGAENKDNDPEKA
DDDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHH
GHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVGVG
VGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYFSP
IPSMVGGVSDMSPYPHHYPGYSYQASPSNGAAGPAPGQHGQYGSGAAAPL
QPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVSSSMHLTNSS
HEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLMDM
NESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLGAGNPHGNQANGA
AGGVGPMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAVSSMG
SERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPPV
AQKKHQLYGKRDPHKQTPSALPPTVPPTTATAAQSQSIKYEYDAGYASSG
MASGGISEPGAMGPALTKDYHHHQAYGMGASGSSFSGDYTVRPSPRTSQD
LVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTTSKGTSAGGSSSSAGGS
SSSLEDEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSENQL
SLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRDH
LEGERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLLP
REKSEGNSTATAASNAVSSAGAGSLNGHVPPQAPMHGHHSQHGMQAQHVG
SGMSQQQQQQQSRLPPHLQQQQQHLLQSQQQQPGGQQQQQHRKEoooooo
ooo
>C6
MIDLEDLPRLQSLSPAKDIEDTYNQTQLQPSPKKKVTVTVRVPIGPPSKL
AKLIKPTVASTPAVLATPTPASLETPPTPQSTLPGNAKSNIWRGGFHFNT
MESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATSAKSKLGDEAKS
ADPSMSESSGSKDPNVGAENGATGASADDIEKLKALEELQQDKDKDNENP
LEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSELSNLDELSDDP
VASTSQAAAALNENQAQRIVSETGEDFLGCEGVPSKQRRLGAEDKETDPE
KADGGDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPH
PHHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV
GVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATY
FSPIPSMVGGVSDMSPYPHHYPGYSYQAAPSNGAPGTAGQHGQYGSGASA
PLQPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVSSSMHLTN
SSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFTDEDLHLM
DMNESFCRMVDNSTSNNSSVLGLPSSGHVSSGSGSSAQLGTGNPHGNQAN
GAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAVSS
MGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQP
PVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAVQSQNIKYEYDAGYAS
SGMASGGISEPGAMGPALTKDYHHHQAYGMGASGSAFSGDYTVRPSPRTS
QDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGTSAGSSSSAGG
SSSSMEEEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSENQ
LSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQDRD
HLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVYLL
PREKSEGNSTATAASNAVSSAGGGSLNGHVPAQAPMHGLHSQHGMQAQHV
GSGMSQQQQQQSRLPPHLQQQQQHLLQSQQQQPEGQQQQQHRKEoooooo
ooo
>C7
MIDLEDLPRLQSLSPAKDIEDTYHQTQLQPNPKKKVTVRVPIGPPSKLAK
LIKPTVASTPAILTTPTPTPASLETPPTPTSTTTSGNAKNIWRGGFHFTT
LESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNAKSKLEDEIKS
SDPSISESSGYKDTNVSGENEASGASADDIEKLKALEELQQDKDKDNENP
LEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELTNDP
VASTSQAAAALNENQAQRVVSETGEDFLSGEVVPNKRGRVGVEDKDNDPE
KADGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHP
HHGHHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGV
GVGVGVGVGSGTGSAFQRQPAASGFHHGHHQGRMTRLNRSVSMERLQDFA
TYFSPIPSMVGGVSDMSPYPHHYPGYSYQASPSNGAPGTPGQHGQYGSGA
TAALQPPPPPPPHHAAMLHHPNAPLGDICPTGQPHYGHNLGSAVTSSMHL
TNSSHEADGAAAAAAAYKVEHDLMYYSNTSSDINQTDGFINSIFTDEDLH
LMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAHLGAGNPHGNQ
ANGAAGGVNSMSGSAVGTGAAGMTADLLASGGAGAQGGADRLDASSDSAV
SSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATR
QPPVAQKKHQLYGKRDPHKQTPSALPPTVPPAAATAVQSQNIKYEYDAGY
ASSGMASSGISEPGAMGPALTKDYHHHQAYGMGASGSTFSADYNVRPSPR
TSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTASKGSSAGSSSSA
GGSSSNMEDEHLTRDEKRARSLNIPISVQDIINLPMDEFNERLSKYDLSE
NQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVNAVVKRKTQLNQD
RDHLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPADYSLQQAADGSVY
LLPREKSEGNSTATAASNAVSSASGGSLNGHLPTQAPMHGHHGQHGMQAQ
HVGSGMSQQQQSRLPPHLQQQQQQQHHLQSQQQQPGGQQQQQHRKEoooo
ooo
>C8
MIDLEDLPRLQSLSPAKDIEDTYRQTQLQPNPKKKVTVRVPIGPPSKLTK
LIKPTVASTPSILATPTPSSLETPPTPQTTTPGDAKTPIWRGGFLFAIPE
SEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLEDEAKSSD
PSMSDTGASKDPNVSAENEASSASAEDLEKLKALEELRQDKEKDNENPLE
DITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDELSNDPVP
STSQAAAALNENQALRIVSETGEDFLSGEGIPNKQRKVGDKDKDTDPEKG
EGDSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAPPYHHPHPHH
GHPHAHPHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANYGGGVGVGVG
VGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRSVSMERLQDFATYF
SPIPSMVGGVSEMSPYPHHYPSYSYQASPSNGAPAPGQHGQYGSGAAAPL
QPPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGHNLGSAVTSSMHLTNS
SHEADSAAAAAAAYKVEHDLMYYGNTSSDINQTDGFINSIFADEDLHLMD
MNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSSAQLAAGNPHGNQVNG
AASGVGPMSGSVVGTGAAGMTADLLASGGAGAQGGTDRLDASSDSAVSSM
GSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFSYNNNSRLSTATRQPP
VAQKKHQLYGKRDPHKQAPSAVPPTAPTAASTAVQSQSIKYEYDAGYASS
GMASGGVASEPGAMGPALTKDYHHHQAYGMGASGSTFSGDYTVRPSPRTS
QDLVQLNHTYSLPQGSGSLPRPQVRDKKPLVATKTASKGTSAGSSSSGAG
GSSGNLEDEHLTRDEKRARSLNIPISVHDIINLPMDEFNERLSKYDLSEN
QLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVHAVVKRKSQLNQER
DHLDSERKRISNKFAMLHRHVFQYLRDPEGNPCSPSDYSLQQAADGSVYL
LPREKPEGNSTATSASSAVSAVAGSLSGHVPSQAPMHGHHSQHGMQAQHV
GSGMSQQQQQQQSRLPPHLQQQQQQQHHLQSQQQQPGGQQQQHRKEoooo
ooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=8, Len=1188 

C1              MIDLEDLPRLQSLSPAKDIEYTYHQTQLQL-NPKKK--VTVRVPIGPPSK
C2              MIDLEDLPRLQSLSPAKDIEDTYHQTLLQP-NPKKK--VTVRVPIGPPSK
C3              MIDLEDLPRLQSLSPAKDIEDTYHQIQLQTPNPKKK--VTVRVPIGPPSK
C4              MINLEDLPRLQSLSPAKDIEDTYHQTQLQLPNPKKK--VTVRVPIGPPSK
C5              MIDLEDLPRLQSLSPCKDIEDNYHQTQLQP-NPKK--AVTVRVPIGPPSK
C6              MIDLEDLPRLQSLSPAKDIEDTYNQTQLQP-SPKKKVTVTVRVPIGPPSK
C7              MIDLEDLPRLQSLSPAKDIEDTYHQTQLQP-NPKKK--VTVRVPIGPPSK
C8              MIDLEDLPRLQSLSPAKDIEDTYRQTQLQP-NPKKK--VTVRVPIGPPSK
                **:************.**** .*.*  **  .***   ************

C1              LSKLIKPTVASTPAVLAKP--TPS------ITQSTTPG--NAKTNIWKGG
C2              LAKLIKPTVASTPALLATP--TPASLETPPTPQSTTPG--NAKTNIWRGG
C3              LAKLIKPTVASTPAVLATP--TPASLETPPTPQSTDPGNANAKSNIWRGG
C4              LAKLIKPTVASTPAVLATP--TPASLQTPPTPQSTTPG--SAKTNIWRGG
C5              LAKLIKPTVASTPAILATP--TAASLETPPTPQSTTPG--NAKNPIWRGG
C6              LAKLIKPTVASTPAVLATP--TPASLETPPTPQSTLPG--NAKSNIWRGG
C7              LAKLIKPTVASTPAILTTPTPTPASLETPPTPTSTTTS--GNAKNIWRGG
C8              LTKLIKPTVASTPSILATP--TPSSLETPPTPQTTTPG--DAKTPIWRGG
                *:***********::*:.*  *.:       . :* ..  .  . **:**

C1              FHFTNLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNVKSKPE
C2              FHFTTLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAASNAKSKPE
C3              FHFTTLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSGATNAKSKLE
C4              FHFTTLESEIAEVLYKQDVDLGFSLDQEAVINASYASGNSAATNAKSKLE
C5              FHFNNLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLE
C6              FHFNTMESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATSAKSKLG
C7              FHFTTLESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSAATNAKSKLE
C8              FLFAIPESEIAEVLYKQDVDLGFSLDQEAIINASYASGNSGATNAKSKLE
                * *   ***********************:**********.*:..***  

C1              DETKSSDPSISESSGFKDTDVNAENEASAASVDDIEKLKALEELQQDKDK
C2              DEAKSSDPSMSESSGFKDNDVNAENEASAASADDIEKLKALEELQQDKDK
C3              DEAKSSDPSMSESSGYKDTNVSAENEATAASADDIEKLKALEELQQDKDK
C4              DEAKSSDPSMSESSGIKDTDVNGENEVSAASSDDIEKLKALEELQQDKDK
C5              DEAKSSDPSMSESGVSKDTNVNAENEAGGASADDIEKLKALEELQQDKDK
C6              DEAKSADPSMSESSGSKDPNVGAENGATGASADDIEKLKALEELQQDKDK
C7              DEIKSSDPSISESSGYKDTNVSGENEASGASADDIEKLKALEELQQDKDK
C8              DEAKSSDPSMSDTGASKDPNVSAENEASSASAEDLEKLKALEELRQDKEK
                ** **:***:*::.  ** :*..** . .** :*:*********:***:*

C1              NNENQLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLQDD
C2              DNENPLEDISNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLTEFPLEDE
C3              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE
C4              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE
C5              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE
C6              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSELSNLDE
C7              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE
C8              DNENPLEDITNEWNGIPFTIDNETGEYIRLPLDELLNDVLKLSEFPLEDE
                :*** ****:********************************:*:.  *:

C1              LSNDPVASTSQAAAAFNENQAQRIVSETGEDLLSGEGISSKQNRNEAK-N
C2              LSNDPVASTSQAAAAFNENQAQRIVSETGEDFLSGEGISS----GEAK-N
C3              LSDDPVASTSQAAAAFNENQAQRIVSETGEDFLSGDGVPSKQRRIGAESN
C4              LSNDPVASTSQAAAAFNENQAQRTVSETGEDFLSGEGISSKQRRIGAE-N
C5              LSNDPVASTSQAAAALNENQAQRIVSETGEDFLGAEGVPSKQRRIGAE-N
C6              LSDDPVASTSQAAAALNENQAQRIVSETGEDFLGCEGVPSKQRRLGAE-D
C7              LTNDPVASTSQAAAALNENQAQRVVSETGEDFLSGEVVPNKRGRVGVE-D
C8              LSNDPVPSTSQAAAALNENQALRIVSETGEDFLSGEGIPNKQRKVGDK-D
                *::***.********:***** * *******:*. : :..       : :

C1              KDNDPEKADG-DSFSVSDFEELQNSVGSPLFDLDEDAKKELDEMLQSAVP
C2              KDNDPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C3              KDNEPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C4              KDNESERTDG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C5              KDNDPEKADD-DSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C6              KETDPEKADGGDSFSVCDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C7              KDNDPEKADG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
C8              KDTDPEKGEG-DSFSVSDFEDLQNSVGSPLFDLDEDAKKELDEMLQSTAP
                *:.:.*: :. *****.***:**************************:.*

C1              SYHHPHP--HHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY
C2              PYHHPHP--HHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY
C3              PYHHPHPHHGH-HPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY
C4              PYHHPHPHPHHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAVQQANY
C5              PYHHPHP--HHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY
C6              PYHHPHP--HHGHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY
C7              PYHHPHP-HHGHHPHAHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY
C8              PYHHPHPHHGHPHAHPHPHSHHHATMHHAHAHHAAAAAAAHQRAVQQANY
                .******     *.*.********:*************************

C1              GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS
C2              GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS
C3              GG--GVGVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRS
C4              GGGVGVGVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQSRMPRLNRS
C5              GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS
C6              GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS
C7              GG--GVGVGVGVGVGVGVGSGTGSAFQRQPAASGFHHGHHQGRMTRLNRS
C8              GG----GVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNRS
                **    **************************.********.**.*****

C1              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG-
C2              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNVAPG-
C3              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG-
C4              VSMERLQDFATYFSPIPSMVGGVSDMSPYPHHHYPGYSYQASPSNGAPG-
C5              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAAGP
C6              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQAAPSNGAPG-
C7              VSMERLQDFATYFSPIPSMVGGVSDMSPYP-HHYPGYSYQASPSNGAPG-
C8              VSMERLQDFATYFSPIPSMVGGVSEMSPYP-HHYPSYSYQASPSNGAPA-
                ************************:***** ****.*****:*** *.. 

C1              TPGQHGQYGSGANATLQPPPPPPPPHHAAMLHHPN-AALGDICPTGQPHY
C2              TPGQHGQYGSGANASLQPPPPPPP-HHAAMLHHPNAAALGDICPTGQPHY
C3              TAGQHGQYGSGATATLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY
C4              TPGQHGQYGSGATASLQPPPPPPPPHHAAMLQHPN-AALGDICPTGQPHY
C5              APGQHGQYGSGAAAPLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY
C6              TAGQHGQYGSGASAPLQPPPPPPP-HHAAMLHHPN-AALGDICPTGQPHY
C7              TPGQHGQYGSGATAALQPPPPPPP-HHAAMLHHPN-APLGDICPTGQPHY
C8              -PGQHGQYGSGAAAPLQPPPPPPPPHHAAMLHHPN-AALGDICPTGQPHY
                 .********** *.********* ******:*** *.************

C1              GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C2              GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C3              GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C4              GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C5              GHNLGSAVSSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C6              GHNLGSAVSSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQT
C7              GHNLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYSNTSSDINQT
C8              GHNLGSAVTSSMHLTNSSHEADSAAAAAAAYKVEHDLMYYGNTSSDINQT
                ********:*************.*****************.*********

C1              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C2              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C3              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C4              DGFMNSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C5              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C6              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSSGSG
C7              DGFINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
C8              DGFINSIFADEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSG
                ***:****:*************************************.***

C1              SSAQLGAGNPHGNQANGASGGVGSMSGSAVGAGATGMTADLLASGGAGAQ
C2              SSAQLGAGNPHGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQ
C3              SSAQLGAGNPHGNQANGATGGVGPMSGSAVGAGATGMTADLLASGGAGAQ
C4              SSAQLGAGNPHGNQANGASGGVGPMSGSAVGAGATGMTADLLASGGAGAQ
C5              SSAQLGAGNPHGNQANGAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQ
C6              SSAQLGTGNPHGNQANGAAGGVGPMSGSAVGTGAAGMTADLLASGGAGAQ
C7              SSAHLGAGNPHGNQANGAAGGVNSMSGSAVGTGAAGMTADLLASGGAGAQ
C8              SSAQLAAGNPHGNQVNGAASGVGPMSGSVVGTGAAGMTADLLASGGAGAQ
                ***:*.:*******.***:.**..****.**:**:***************

C1              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C2              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C3              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C4              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C5              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C6              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C7              GGADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
C8              GGTDRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYD
                **:***********************************************

C1              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA
C2              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA
C3              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA
C4              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQAPSALPPTAPPAAATA
C5              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTVPPTTATA
C6              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATA
C7              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTVPPAAATA
C8              FSYNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQAPSAVPPTAPTAASTA
                **********************************:***:***.*.:::**

C1              VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQPYGMGAS
C2              VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQAYGMGAS
C3              AQSHSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHHHQAYGMGAS
C4              VQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALSKDYHH-QAYGMGAS
C5              AQSQSIKYEYDAGYASSGMASGGIS-EPGAMGPALTKDYHHHQAYGMGAS
C6              VQSQNIKYEYDAGYASSGMASGGIS-EPGAMGPALTKDYHHHQAYGMGAS
C7              VQSQNIKYEYDAGYASSGMASSGIS-EPGAMGPALTKDYHHHQAYGMGAS
C8              VQSQSIKYEYDAGYASSGMASGGVASEPGAMGPALTKDYHHHQAYGMGAS
                .**:.****************.*:: *********:***** *.******

C1              GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C2              GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C3              GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C4              GSAFSGDYTVRPSPRSSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C5              GSSFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C6              GSAFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C7              GSTFSADYNVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVAT
C8              GSTFSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQVRDKKPLVAT
                **:**.**.******:************************.*********

C1              KTASKGASAG-NSSSVGGNSSNLEEEHLTRDEKRARSLNIPISVPDIINL
C2              KTASKGTSAG-NSSSVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINL
C3              KTASKGSSAG-NSSSVGGNSSSLEEEHLTRDEKRARSLNIPISVPDIINL
C4              KTASKGSSAG-NSSSVGGNS-TMEEEHLTRDEKRARSLNIPISVQDIINL
C5              KTTSKGTSAGGSSSSAGGSSSSLEDEHLTRDEKRARSLNIPISVQDIINL
C6              KTASKGTSAG-SSSSAGGSSSSMEEEHLTRDEKRARSLNIPISVQDIINL
C7              KTASKGSSAG-SSSSAGGSSSNMEDEHLTRDEKRARSLNIPISVQDIINL
C8              KTASKGTSAGSSSSGAGGSSGNLEDEHLTRDEKRARSLNIPISVHDIINL
                **:***:*** .**..**.* .:*:******************* *****

C1              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C2              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C3              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C4              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C5              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C6              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C7              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
C8              PMDEFNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLE
                **************************************************

C1              DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC
C2              DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC
C3              DEVNAVVKRKTQLNQDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPC
C4              DEVNAVVKRKTQLNQDREHFESERKRISNKFAMLHRHVFQYLRDPEGNPC
C5              DEVNAVVKRKTQLNQDRDHLEGERKRISNKFAMLHRHVFQYLRDPEGNPC
C6              DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC
C7              DEVNAVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPC
C8              DEVHAVVKRKSQLNQERDHLDSERKRISNKFAMLHRHVFQYLRDPEGNPC
                ***:******:****:*:*::.****************************

C1              SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT
C2              SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT
C3              SPADYSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPT
C4              SPADYSLQQAADGSVYLLPREKSEGNNSATAASNAVSSASGGSLNGHVPT
C5              SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSAGAGSLNGHVPP
C6              SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSAGGGSLNGHVPA
C7              SPADYSLQQAADGSVYLLPREKSEGNSTATAASNAVSSASGGSLNGHLPT
C8              SPSDYSLQQAADGSVYLLPREKPEGNSTATSASSAVSAVAG-SLSGHVPS
                **:*******************.***.:**:**.***:... **.**:*.

C1              QAPMHSHQ-SHGMQAQHVVGGMSQQQ--QQQSRLPPHLQ------QQHHL
C2              QAPMHSHQ-SHGMQAQHVVGGMSQQQ--QQQSRLPPHLQ------QQHHL
C3              QAPMHSHQ-SHGMQAQHVVGGMSQQQQQQQ-SRLPPHLQQQQQ----HHL
C4              QAPMHSHQ-SHGMQAQHVVGGMPQQQQQQQQSRLPPHLQQQQQQQQQHHL
C5              QAPMHGHHSQHGMQAQHVGSGMSQQQ-QQQQSRLPPHLQQQ----QQHLL
C6              QAPMHGLHSQHGMQAQHVGSGMSQQQ-QQQ-SRLPPHLQQQ----QQHLL
C7              QAPMHGHHGQHGMQAQHVGSGMSQQQ----QSRLPPHLQQQQQ--QQHHL
C8              QAPMHGHHSQHGMQAQHVGSGMSQQQ-QQQQSRLPPHLQQQQQ--QQHHL
                *****. : .******** .**.***     ********        * *

C1              QSQQQQPGGQQQQQHRKEoooooooooooooooooooo
C2              QSQQQQPGGQQQQQHRKEoooooooooooooooooo--
C3              QSQQQQPGGQQQQQHRKEooooo---------------
C4              QSQQQQPGGQQQQQHRKE--------------------
C5              QSQQQQPGGQQQQQHRKEooooooooo-----------
C6              QSQQQQPEGQQQQQHRKEooooooooo-----------
C7              QSQQQQPGGQQQQQHRKEooooooo-------------
C8              QSQQQQPGGQQQQ-HRKEooooooo-------------
                ******* ***** ****                    




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 1153 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 8 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1153 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/210/cnc-PN/batch/allfiles/tcoffee/input.fasta.prot.fas