--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Fri Nov 25 22:23:14 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/A16-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -3328.91 -3339.63
2 -3328.88 -3339.85
--------------------------------------
TOTAL -3328.89 -3339.75
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.509206 0.002197 0.423341 0.607096 0.506088 1064.76 1113.10 1.000
r(A<->C){all} 0.086272 0.000289 0.054414 0.120049 0.085274 1007.85 1108.78 1.001
r(A<->G){all} 0.219321 0.000810 0.167742 0.277645 0.218649 937.16 950.59 1.001
r(A<->T){all} 0.127141 0.000770 0.074940 0.182640 0.126125 820.87 938.02 1.001
r(C<->G){all} 0.060468 0.000161 0.038804 0.088094 0.059505 1096.96 1176.89 1.000
r(C<->T){all} 0.431665 0.001661 0.356700 0.512434 0.431770 833.35 835.29 1.000
r(G<->T){all} 0.075133 0.000354 0.040643 0.112213 0.074016 1074.69 1111.45 1.000
pi(A){all} 0.264596 0.000149 0.241433 0.289264 0.264356 899.71 1009.28 1.000
pi(C){all} 0.282346 0.000148 0.258359 0.306174 0.282268 1055.84 1166.41 1.001
pi(G){all} 0.303026 0.000157 0.279060 0.327007 0.302822 800.26 1011.34 1.000
pi(T){all} 0.150033 0.000092 0.131297 0.168111 0.149697 896.65 1010.45 1.001
alpha{1,2} 0.158784 0.002513 0.060864 0.268838 0.159180 881.61 994.68 1.000
alpha{3} 2.197050 0.686181 0.829774 3.774659 2.049270 1070.86 1075.97 1.000
pinvar{all} 0.209080 0.009218 0.013081 0.365398 0.214141 1180.97 1234.39 1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -2958.567526
Model 2: PositiveSelection -2958.567526
Model 0: one-ratio -2985.024376
Model 3: discrete -2950.646601
Model 7: beta -2953.087077
Model 8: beta&w>1 -2953.08718
Model 0 vs 1 52.91370000000006
Model 2 vs 1 0.0
Model 8 vs 7 2.0599999970727367E-4
>C1
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWQSEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDFoooo
>C2
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESINKESGSMEGAGKQEDHKTEAASGTRGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTSTPTSASSSISGSM
LESQQTPDKSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMH
TKRTSSPSGANCDGMELDGEYEDNDDDEQEEAEEEFDLAKTIAEAEDYLK
QHPLTYVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWESEEFIKRTCPSLLKAYEM
NRERRQQRLMHHVAKRQSLRQRYTDFoooo
>C3
MDTKSNDDSAGSDSLDKSMQIKCVMVETTATGDGDSTVGDLDNCSRDSAA
ESMGKGSGSMEEAGKQADHKTEAVTGTRGEGDSPQSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASASTSTPTPKSASSSSSM
LESQQTPNDSTPDTTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMQ
TKRTSSPSGANCDGMELDGEAEEEYEDNDDEEQEEAEEEFDLAKTIAEAE
DYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFR
RIKPENGIERILGKETKAGKVEFLLRYENQGGLFWESEEFIKRTCPSLLK
AYEKNRERRQQRLMHHVAKRQSLRQRYTDF
>C4
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGDGDSTVGDLDNCSRDSAA
ESMGKGSGATVGAGKQADHKTEAVAGTRGEGDRPPSSQSPPEHPASKSPT
SPCTAFETKVKLISQNLKETTLAESTGASVSASTSTPTFASSSSSLLESQ
QIPNNSTPETTDSASSSVRVKKVRFHPDVKENDGGNWMKRKRRSMQTKRT
SSPSGANCDGMELDGEAEEEYEENDDVEQEEAEEEFDLAKTIAEAEDYLK
QHPLTFVQRVEQNGERVQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKP
ENGIERILGKETKAGKVEFLLRYENQGGLFWESEEFIKRTCPSLLKAYEK
NRERRQQRLMHHVAKRQSLRQRYTDFoooo
>C5
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTGDGDSNAGAMPSPGDLDNCS
RDSAAESMGKGSESVSGPEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANSSPTSSCTAFETKVKLISQNLKETTLAESSGASVSASTSASSSSS
LLESQTPNNSTTDIDSASSVRVKKVRFHPDVKENDGGNWVKKKRRSTQTK
RASSPSGANCDGMEMDGEAEEEYEANDDEEEEPEEEFDLAKTIAEAEDYL
KQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIK
PENGIERILGKETKAGKVEFLLRYENQGGLFWESEEFIKRTCPSLLKAYE
KNRERRQQRLMHHVAKRQSLRQRYTDFooo
>C6
MDTKSNDDSAGSDSLDKSMQIKCVMVETTGDSNVDTMASPEELDNCSRDS
AAESMDKGGAEAGAGKQADQKTEAAAGTRGEGDSPPSSVTPPEHPASNSP
TSSCTAFETKVKLISQNLKETTLAESSGASVSASTSVSSNSSLLEPQTSN
NSTTDTESTASNVRVKKVRFHPDVKQNDGGTWVKKKRRSTQTKRASSPSG
ANCDGDGMELDGEAEEYEDNEDEEEEAEEEFDLAKTIAEAEDYLKQHPLT
FVQRVEQNGERLQDGLLSIEDMLNEVGEEVVTEFNDEDFFRRIKPENGIE
RILGKETKAGKVEFLLRSENQGRLFWESEEFIKRTCPSLLKAYEKNRERR
QQRLMHHVAKRQSLRQRYTDFooooooooo
>C7
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTTGEGDSSPGDLDNCSRDSAA
ESISKEAEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPPEHPANNSPTSS
SSSCTAFETKVKLISQNLKETTLAESTGASVSASTSASSSSSLLESQTPS
NNSTTDSAASSVRVKKVRFHPDVKENDGGNWVKKKRRSTQTKRASSPSGA
NCDGMELDGEEEEYEDEEAEEPEEEFDLARTIAEAEDYLKQHPLTFVQRV
EQNGERLQDGLLSIEDMLNEVGEEVVTEYNDEDFFRRIKPENGIERILGK
ETKAGKVEFLLRYENQGGLFWESEEFIRRTCPSLLKAYEKNRERRQQRLM
HHVAKRQSLRQRYTDFoooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=408
C1 MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
C2 MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
C3 MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----ATGDGDSTVGDLDNCS
C4 MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
C5 MDTKSNDDSAGSDSLDKSMQIKCVMVETTTGDGDSNAGAMPSPGDLDNCS
C6 MDTKSNDDSAGSDSLDKSMQIKCVMVETT---GDSNVDTMASPEELDNCS
C7 MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGEGDSSPGDLDNCS
***************************** :. .: :*****
C1 RDSAAESINKES----GSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPP
C2 RDSAAESINKES----GSMEGAGKQEDHKTEAASGTRGEGDSPQSSQSPP
C3 RDSAAESMGKGS----GSMEEAGKQADHKTEAVTGTRGEGDSPQSSQSPP
C4 RDSAAESMGKGS----GATVGAGKQADHKTEAVAGTRGEGDRPPSSQSPP
C5 RDSAAESMGKGSESVSGPEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
C6 RDSAAESMDKG-----GAEAGAGKQADQKTEAAAGTRGEGDSPPSSVTPP
C7 RDSAAESISKE------AEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
*******:.* . **** *:****.:*: **** * ** :**
C1 EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
C2 EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
C3 EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASASTST
C4 EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSAS--TST
C5 EHPANSSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
C6 EHPASNSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
C7 EHPANNSPTSSSSSCTAFETKVKLISQNLKETTLAESTGASVSAS-----
****..****. ***********************:*******
C1 PTSASSSISGSMLESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDG
C2 PTSASSSISGSMLESQQTPDKSTPETTDSASSSVRVKKVRFHPDVKENDG
C3 PTPKSASSSSSMLESQQTPNDSTPDTTDSASSSVRVKKVRFHPDVKENDG
C4 PTFASSS--SSLLESQQIPNNSTPETTDSASSSVRVKKVRFHPDVKENDG
C5 -TSASSS--SSLLES-QTPNNSTTD-IDS-ASSVRVKKVRFHPDVKENDG
C6 -TSVSSN--SSLLEP-QTSNNSTTD-TESTASNVRVKKVRFHPDVKQNDG
C7 -TSASSS--SSLLES-QTPSNNST--TDSAASSVRVKKVRFHPDVKENDG
* *:. .*:**. * ....:. :* :*.*************:***
C1 GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
C2 GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
C3 GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEDNDDEEQEEA
C4 GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEENDDVEQEEA
C5 GNWVKKKRRSTQTKRASSPSGANCDG--MEMDGEAEEEYEAND-DEEEEP
C6 GTWVKKKRRSTQTKRASSPSGANCDGDGMELDGEA-EEYEDNE-DEEEEA
C7 GNWVKKKRRSTQTKRASSPSGANCDG--MELDGEE-EEYED---EEAEEP
*.*:*:**** :***:********** **:** *** * **.
C1 EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
C2 EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
C3 EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
C4 EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERVQDGLLSIEDMLNEVG
C5 EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
C6 EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
C7 EEEFDLARTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
*******:***************:**********:***************
C1 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWQ
C2 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
C3 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
C4 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
C5 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
C6 EEVVTEFNDEDFFRRIKPENGIERILGKETKAGKVEFLLRSENQGRLFWE
C7 EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
******:********************************* **** ***:
C1 SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
C2 SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
C3 SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF------
C4 SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
C5 SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFooo---
C6 SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
C7 SEEFIRRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
*****:*********** **************************
C1 --------
C2 --------
C3 --------
C4 --------
C5 --------
C6 ooo-----
C7 oooooooo
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alns S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
s S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 380 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 380 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
--- Process Method/Library/Aln Mproba_pair
xxx Retrieved S/opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
xxx Retrieved Mproba_pair
All Methods Retrieved
MANUAL PENALTIES: gapopen=0 gapext=0
Library Total Size: [20278]
Library Relaxation: Multi_proc [72]
Relaxation Summary: [20278]--->[19112]
UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1
OUTPUT RESULTS
#### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
#### File Type= MSA Format= html Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
#### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/A16-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.441 Mb, Max= 31.046 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESINKES----GSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWQ
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C2
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESINKES----GSMEGAGKQEDHKTEAASGTRGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPDKSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C3
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----ATGDGDSTVGDLDNCS
RDSAAESMGKGS----GSMEEAGKQADHKTEAVTGTRGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASASTST
PTPKSASSSSSMLESQQTPNDSTPDTTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEDNDDEEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF------
--------
>C4
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESMGKGS----GATVGAGKQADHKTEAVAGTRGEGDRPPSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSAS--TST
PTFASSS--SSLLESQQIPNNSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEENDDVEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERVQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C5
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTGDGDSNAGAMPSPGDLDNCS
RDSAAESMGKGSESVSGPEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANSSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
-TSASSS--SSLLES-QTPNNSTTD-IDS-ASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDG--MEMDGEAEEEYEAND-DEEEEP
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFooo---
--------
>C6
MDTKSNDDSAGSDSLDKSMQIKCVMVETT---GDSNVDTMASPEELDNCS
RDSAAESMDKG-----GAEAGAGKQADQKTEAAAGTRGEGDSPPSSVTPP
EHPASNSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
-TSVSSN--SSLLEP-QTSNNSTTD-TESTASNVRVKKVRFHPDVKQNDG
GTWVKKKRRSTQTKRASSPSGANCDGDGMELDGEA-EEYEDNE-DEEEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEFNDEDFFRRIKPENGIERILGKETKAGKVEFLLRSENQGRLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
ooo-----
>C7
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGEGDSSPGDLDNCS
RDSAAESISKE------AEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANNSPTSSSSSCTAFETKVKLISQNLKETTLAESTGASVSAS-----
-TSASSS--SSLLES-QTPSNNST--TDSAASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDG--MELDGEE-EEYED---EEAEEP
EEEFDLARTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIRRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
oooooooo
FORMAT of file /tmp/tmp907022706582586163aln Not Supported[FATAL:T-COFFEE]
>C1
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESINKES----GSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWQ
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C2
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESINKES----GSMEGAGKQEDHKTEAASGTRGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPDKSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDG--MELDG----EYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C3
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----ATGDGDSTVGDLDNCS
RDSAAESMGKGS----GSMEEAGKQADHKTEAVTGTRGEGDSPQSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSASASTST
PTPKSASSSSSMLESQQTPNDSTPDTTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEDNDDEEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF------
--------
>C4
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGDGDSTVGDLDNCS
RDSAAESMGKGS----GATVGAGKQADHKTEAVAGTRGEGDRPPSSQSPP
EHPASKSPTSP---CTAFETKVKLISQNLKETTLAESTGASVSAS--TST
PTFASSS--SSLLESQQIPNNSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDG--MELDGEAEEEYEENDDVEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERVQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooo--
--------
>C5
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTGDGDSNAGAMPSPGDLDNCS
RDSAAESMGKGSESVSGPEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANSSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
-TSASSS--SSLLES-QTPNNSTTD-IDS-ASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDG--MEMDGEAEEEYEAND-DEEEEP
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFooo---
--------
>C6
MDTKSNDDSAGSDSLDKSMQIKCVMVETT---GDSNVDTMASPEELDNCS
RDSAAESMDKG-----GAEAGAGKQADQKTEAAAGTRGEGDSPPSSVTPP
EHPASNSPTSS---CTAFETKVKLISQNLKETTLAESSGASVSAS-----
-TSVSSN--SSLLEP-QTSNNSTTD-TESTASNVRVKKVRFHPDVKQNDG
GTWVKKKRRSTQTKRASSPSGANCDGDGMELDGEA-EEYEDNE-DEEEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEFNDEDFFRRIKPENGIERILGKETKAGKVEFLLRSENQGRLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
ooo-----
>C7
MDTKSNDDSAGSDSLDKSMQIKCVMVETT-----TTGEGDSSPGDLDNCS
RDSAAESISKE------AEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANNSPTSSSSSCTAFETKVKLISQNLKETTLAESTGASVSAS-----
-TSASSS--SSLLES-QTPSNNST--TDSAASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDG--MELDGEE-EEYED---EEAEEP
EEEFDLARTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIRRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDFoooooo
oooooooo
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:408 S:94 BS:408
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES
BOT 0 1 98.16 C1 C2 98.16
TOP 1 0 98.16 C2 C1 98.16
BOT 0 2 93.62 C1 C3 93.62
TOP 2 0 93.62 C3 C1 93.62
BOT 0 3 93.35 C1 C4 93.35
TOP 3 0 93.35 C4 C1 93.35
BOT 0 4 88.56 C1 C5 88.56
TOP 4 0 88.56 C5 C1 88.56
BOT 0 5 85.05 C1 C6 85.05
TOP 5 0 85.05 C6 C1 85.05
BOT 0 6 90.93 C1 C7 90.93
TOP 6 0 90.93 C7 C1 90.93
BOT 1 2 94.41 C2 C3 94.41
TOP 2 1 94.41 C3 C2 94.41
BOT 1 3 93.88 C2 C4 93.88
TOP 3 1 93.88 C4 C2 93.88
BOT 1 4 89.10 C2 C5 89.10
TOP 4 1 89.10 C5 C2 89.10
BOT 1 5 85.60 C2 C6 85.60
TOP 5 1 85.60 C6 C2 85.60
BOT 1 6 91.21 C2 C7 91.21
TOP 6 1 91.21 C7 C2 91.21
BOT 2 3 95.21 C3 C4 95.21
TOP 3 2 95.21 C4 C3 95.21
BOT 2 4 90.22 C3 C5 90.22
TOP 4 2 90.22 C5 C3 90.22
BOT 2 5 86.65 C3 C6 86.65
TOP 5 2 86.65 C6 C3 86.65
BOT 2 6 90.36 C3 C7 90.36
TOP 6 2 90.36 C7 C3 90.36
BOT 3 4 90.57 C4 C5 90.57
TOP 4 3 90.57 C5 C4 90.57
BOT 3 5 87.33 C4 C6 87.33
TOP 5 3 87.33 C6 C4 87.33
BOT 3 6 91.01 C4 C7 91.01
TOP 6 3 91.01 C7 C4 91.01
BOT 4 5 91.91 C5 C6 91.91
TOP 5 4 91.91 C6 C5 91.91
BOT 4 6 93.42 C5 C7 93.42
TOP 6 4 93.42 C7 C5 93.42
BOT 5 6 89.52 C6 C7 89.52
TOP 6 5 89.52 C7 C6 89.52
AVG 0 C1 * 91.61
AVG 1 C2 * 92.06
AVG 2 C3 * 91.74
AVG 3 C4 * 91.89
AVG 4 C5 * 90.63
AVG 5 C6 * 87.68
AVG 6 C7 * 91.07
TOT TOT * 90.96
CLUSTAL W (1.83) multiple sequence alignment
C1 ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
C2 ATGGATACCAAGTCCAATGATGACTCTGCTGGCAGTGACTCGCTGGACAA
C3 ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
C4 ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
C5 ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
C6 ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
C7 ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
***************** ******** ***********************
C1 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
C2 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
C3 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
C4 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACTACG-------------
C5 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACGACGACGGGAGACGGAG
C6 ATCTATGCAAATCAAGTGTGTGATGGTAGAGACGACG---------GGGG
C7 ATCTATGCAAATCAAGTGTGTGATGGTGGAGACGACG-------------
***************************.***** ***
C1 --ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
C2 --ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
C3 --GCGACGGGCGACGGAGACTCCACAGTCGGAGATCTAGACAACTGCAGC
C4 --ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
C5 ACTCCAATGCGGGCGCAATGCCCTCACCCGGGGATCTGGACAACTGCAGC
C6 ACTCCAATGTGGACACAATGGCCTCACCTGAGGAGTTGGACAACTGCAGC
C7 --ACGACGGGCGAGGGGGACTCCTCGCCGGGGGATCTGGACAACTGCAGC
* *. * *. . ..: **:*. *..** *.************
C1 AGGGATTCCGCTGCGGAATCGATTAACAAGGAATCC------------GG
C2 AGGGATTCCGCTGCGGAATCGATTAACAAGGAATCC------------GG
C3 AGGGATTCCGCTGCGGAATCGATGGGCAAGGGATCG------------GG
C4 AGGGATTCCGCTGCGGAATCGATGGGCAAGGGATCG------------GG
C5 AGGGATTCCGCTGCGGAATCAATGGGCAAGGGGTCGGAATCAGTATCGGG
C6 CGGGATTCCGCTGCGGAATCGATGGACAAAGGG---------------GG
C7 AGGGATTCCGCTGCGGAATCGATTAGCAAGGAG-----------------
.*******************.** ..***.*..
C1 TTCGATGGAGGGAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGG
C2 TTCGATGGAGGGAGCCGGCAAGCAGGAGGATCACAAGACTGAAGCTGCGT
C3 TTCGATGGAGGAAGCCGGGAAGCAGGCGGATCACAAGACTGAAGCTGTAA
C4 TGCGACGGTGGGAGCCGGAAAGCAGGCGGATCACAAGACTGAAGCTGTGG
C5 ACCAGAGGCGGGAGCTGGGAAGCAGGCGGATCACAAGACTGAAGCTGCGG
C6 CGCCGAGGCGGGAGCTGGAAAACAGGCGGATCAAAAGACTGAAGCTGCGG
C7 -GCGGAAGCTGGAGCTGGGAAGCAGGCGGATCACAAGACTGAAGCTGCGG
* . .* *.*** ** **.***..******.************* .
C1 CGGGGTCGTGCGGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCA
C2 CGGGTACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
C3 CGGGGACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
C4 CGGGGACGCGGGGCGAGGGCGATCGTCCGCCGAGCAGCCAATCCCCACCA
C5 CGGGGACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
C6 CGGGGACGCGGGGCGAGGGCGACAGTCCGCCAAGCAGCGTAACCCCACCA
C7 CGGGGACGCGGGGCGAGGGCGACAGCCCGCAGAGCAGCCAATCCCCACCA
**** :** * *********** .* ****..***** :*:********
C1 GAACATCCGGCCAGCAAATCGCCCACATCTCCA---------TGCACTGC
C2 GAACATCCGGCCAGCAAATCGCCCACATCTCCA---------TGCACTGC
C3 GAACATCCGGCCAGCAAATCGCCCACGTCCCCA---------TGCACTGC
C4 GAACATCCGGCCAGCAAATCACCCACGTCCCCA---------TGCACTGC
C5 GAACATCCGGCCAACAGCTCGCCCACATCCTCC---------TGCACTGC
C6 GAACATCCGGCCAGCAACTCGCCCACATCCTCC---------TGCACTGC
C7 GAACATCCGGCCAACAACTCGCCCACCTCCTCCTCCTCCTCCTGCACTGC
*************.**..**.***** ** *. ********
C1 CTTCGAGACGAAAGTCAAGCTTATATCACAGAACCTCAAGGAAACCACGC
C2 CTTCGAGACGAAAGTCAAGCTTATCTCACAGAACCTCAAGGAAACCACGC
C3 CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACTC
C4 CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACGC
C5 CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACGC
C6 CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACTACTC
C7 CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAGACCACGC
*********************:**.*****************.** ** *
C1 TGGCGGAGAGCACCGGCGCCTCCGTATCAGCATCCACATCCACATCAACA
C2 TGGCGGAGAGCACCGGCGCCTCCGTATCTGCATCCACATCCACATCAACA
C3 TGGCCGAGAGTACCGGCGCCTCAGTATCAGCATCAGCATCCACATCTACA
C4 TGGCCGAGAGTACCGGCGCCTCAGTATCAGCATCC------ACATCCACA
C5 TGGCCGAGAGTTCCGGCGCATCAGTATCGGCATCC---------------
C6 TGGCCGAGAGTTCCGGCGCATCAGTATCGGCATCC---------------
C7 TGGCCGAGAGTACCGGCGCCTCGGTCTCGGCATCC---------------
**** ***** :*******.** **.** *****.
C1 CCCACGTCCGCCTCTAGTAGCATCAGCGGCAGCATGCTGGAGTCGCAGCA
C2 CCCACGTCCGCCTCCAGTAGCATCAGCGGCAGTATGTTGGAGTCGCAGCA
C3 CCCACACCCAAGTCCGCCTCCAGCAGCAGCAGCATGCTGGAGTCGCAGCA
C4 CCCACGTTCGCCTCCAGCAGC------AGCAGCTTGCTGGAGTCGCAGCA
C5 ---ACGTCCGCCTCCAGCAGC------AGCAGTCTTCTGGAGTCG---CA
C6 ---ACGTCCGTCTCCAGCAAC------AGCAGCCTGCTAGAGCCG---CA
C7 ---ACGTCCGCCTCCAGCAGC------AGCAGCCTGCTGGAGTCG---CA
**. *. ** . : * .**** * *.*** ** **
C1 GACACCCAGCCAGTCCACCCCCGAAACAACAGATTCCGCCTCGTCGTCCG
C2 GACACCCGACAAGTCCACCCCCGAAACAACAGATTCCGCCTCGTCGTCCG
C3 GACACCCAACGATTCCACCCCCGATACAACAGACTCCGCCTCATCGTCCG
C4 GATACCCAACAATTCCACCCCCGAAACAACAGACTCCGCCTCGTCGTCCG
C5 GACGCCCAACAATTCCACCACAGAC---ATCGACTCC---GCGTCGTCGG
C6 GACCTCCAACAATTCCACTACAGAC---ACAGAATCCACCGCGTCCAACG
C7 GACGCCCTCCAACAATTCCACC------ACTGACTCCGCCGCGTCGTCCG
** ** * * :. :* .*. * ** *** *.** :. *
C1 TGCGCGTGAAGAAGGTACGCTTCCATCCGGACGTCAAGGAAAACGACGGC
C2 TCCGCGTGAAGAAGGTACGCTTCCATCCGGACGTCAAGGAGAACGACGGC
C3 TCCGCGTGAAGAAGGTACGCTTCCATCCGGATGTCAAGGAGAACGACGGC
C4 TCCGCGTGAAGAAGGTACGCTTCCATCCGGATGTCAAGGAGAACGACGGC
C5 TCCGCGTGAAGAAGGTGCGCTTCCATCCGGACGTCAAGGAAAACGACGGC
C6 TCCGCGTGAAGAAGGTGCGCTTCCATCCAGACGTCAAGCAGAACGACGGT
C7 TCCGCGTGAAGAAGGTGCGCTTCCATCCGGATGTAAAAGAGAACGACGGC
* **************.***********.** **.**. *.********
C1 GGGAACTGGATGAAAAGAAAGCGACGCTCCATGCATACCAAACGAACCTC
C2 GGGAACTGGATGAAAAGAAAGCGACGCTCCATGCATACCAAACGAACCTC
C3 GGCAACTGGATGAAAAGAAAGCGGCGCTCCATGCAGACCAAACGTACCTC
C4 GGGAACTGGATGAAGAGAAAGCGACGCTCCATGCAGACCAAACGTACCTC
C5 GGAAACTGGGTCAAGAAAAAGCGACGCTCCACGCAGACGAAACGGGCCTC
C6 GGCACCTGGGTGAAAAAGAAGCGACGCTCCACGCAGACGAAACGGGCCTC
C7 GGGAATTGGGTCAAGAAGAAGCGACGCTCCACGCAGACGAAGCGGGCCTC
** *. ***.* **.*..*****.******* *** ** **.** .****
C1 CTCGCCCAGCGGCGCTAACTGTGATGGC------ATGGAGCTGGACGGT-
C2 CTCGCCCAGCGGCGCTAACTGTGATGGC------ATGGAGCTGGACGGT-
C3 CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
C4 CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
C5 CTCGCCCAGCGGAGCCAACTGTGATGGC------ATGGAGATGGACGGCG
C6 CTCGCCCAGCGGCGCAAACTGTGATGGCGATGGCATGGAGCTGGACGGCG
C7 CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
************.** ************ ******.*******
C1 -----------GAGTACGAGGACAACGATGACGATGAGCAGGAGGAGGCG
C2 -----------GAGTACGAGGACAACGATGACGATGAGCAAGAGGAGGCG
C3 AAGCCGAGGAGGAGTACGAGGACAATGATGACGAGGAGCAGGAGGAGGCG
C4 AGGCAGAGGAGGAGTACGAGGAGAATGACGACGTGGAGCAGGAGGAGGCG
C5 AGGCCGAGGAAGAGTACGAGGCCAATGAC---GACGAGGAGGAGGAGCCG
C6 AGGCC---GAGGAATACGAGGACAATGAG---GACGAAGAGGAGGAGGCG
C7 AGGAG---GAGGAGTACGAAGAT---------GAGGAGGCGGAGGAGCCG
**.*****.*. *: **. ..****** **
C1 GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
C2 GAGGAGGAGTTCGATTTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
C3 GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
C4 GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
C5 GAGGAGGAGTTCGACCTGGCCAAGACAATCGCCGAAGCGGAGGACTACCT
C6 GAGGAGGAGTTCGACCTAGCCAAGACGATCGCCGAGGCGGAGGATTACCT
C7 GAGGAGGAGTTCGATCTGGCCAGGACGATCGCCGAGGCGGAGGACTACCT
************** *.****.***.********.******** *****
C1 CAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAACAGAACGGCGAGC
C2 CAAACAGCACCCGTTGACGTACGTGCAGCGCGTCGAACAGAACGGCGAGC
C3 CAAGCAGCACCCGTTGACGTTCGTGCAGCGCGTCGAACAGAATGGGGAGC
C4 CAAGCAGCACCCGTTGACGTTCGTGCAACGCGTCGAACAGAACGGCGAGC
C5 CAAGCAGCATCCGCTGACGTTTGTGCAGCGCGTCGAGCAGAACGGTGAGC
C6 TAAGCAGCACCCGTTGACATTCGTACAGCGCGTTGAGCAGAACGGCGAGC
C7 CAAGCAGCACCCGCTGACCTTTGTGCAGCGCGTCGAGCAGAACGGCGAGC
**.***** *** **** *: **.**.***** **.***** ** ****
C1 GGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTAAACGAAGTCGGC
C2 GGCTGCAGGATGGACTGCTCAGCATCGAGGACATGCTAAACGAAGTCGGC
C3 GGCTGCAGGATGGACTGCTCAGCATCGAGGACATGCTGAACGAAGTCGGC
C4 GGGTGCAGGATGGGCTGCTCAGCATCGAGGACATGCTAAACGAAGTCGGC
C5 GGCTGCAGGACGGACTGCTCAGCATCGAGGATATGCTAAACGAAGTCGGC
C6 GGCTGCAGGACGGACTGCTCAGCATCGAGGACATGCTGAACGAAGTTGGC
C7 GGCTGCAGGACGGACTGCTCAGCATCGAGGACATGCTGAATGAGGTCGGC
** ******* **.***************** *****.** **.** ***
C1 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
C2 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
C3 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
C4 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
C5 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
C6 GAGGAGGTGGTCACTGAGTTCAACGACGAGGACTTCTTCAGGCGCATCAA
C7 GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGGCGCATCAA
************** ****:*********************.********
C1 GCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
C2 GCCCGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
C3 GCCCGAAAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
C4 GCCCGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
C5 GCCGGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGCA
C6 GCCCGAGAATGGCATTGAACGAATCCTGGGCAAGGAGACTAAGGCGGGCA
C7 GCCGGAGAACGGCATCGAACGCATTCTGGGCAAGGAGACCAAGGCGGGCA
*** **.** ***** *****.** ************** ********.*
C1 AGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGACTCTTCTGGCAA
C2 AGGTTGAATTTCTTCTGCGCTACGAGAACCAAGGCGGACTCTTCTGGGAA
C3 AGGTTGAATTCCTCTTGCGCTACGAAAACCAAGGCGGGCTCTTCTGGGAA
C4 AGGTTGAATTCCTTTTGCGCTACGAAAACCAAGGCGGGCTTTTCTGGGAA
C5 AGGTTGAATTCCTCTTGCGCTATGAGAACCAGGGTGGTCTTTTTTGGGAA
C6 AGGTCGAATTTCTTTTGCGCTCCGAAAACCAGGGCCGACTTTTTTGGGAG
C7 AGGTTGAATTCCTCTTGCGCTATGAAAACCAGGGTGGGCTCTTTTGGGAA
**** ***** ** ******. **.*****.** * ** ** *** *.
C1 TCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCTCAAGGCCTACGA
C2 TCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCTCAAGGCCTACGA
C3 TCGGAGGAGTTCATCAAGCGTACGTGCCCCTCGCTGCTAAAGGCCTACGA
C4 TCGGAGGAGTTCATCAAGCGTACGTGCCCCTCGCTGCTCAAGGCATACGA
C5 TCGGAGGAGTTCATTAAGCGTACATGTCCCTCTCTCCTCAAGGCCTACGA
C6 TCGGAGGAGTTTATTAAGCGTACGTGTCCCTCGCTGCTCAAGGCATACGA
C7 TCGGAGGAGTTTATTAGGCGTACGTGCCCCTCGCTGCTCAAGGCCTACGA
*********** ** *.*** **.** ***** ** **.*****.*****
C1 AATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATCACGTTGCCAAAA
C2 AATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATCACGTTGCCAAAC
C3 AAAGAATCGGGAACGACGTCAGCAGCGTTTGATGCATCACGTTGCCAAAC
C4 AAAGAATCGGGAACGACGTCAGCAGCGTTTGATGCATCACGTTGCCAAAC
C5 AAAGAATCGCGAACGACGTCAGCAACGTTTGATGCACCATGTTGCCAAAC
C6 AAAAAATCGAGAACGACGTCAACAGCGTTTGATGCACCACGTTGCCAAAC
C7 AAAGAATCGCGAGCGACGTCAACAGCGTTTGATGCACCATGTTGCCAAAC
**:.***** **.********.**.** ******** ** *********.
C1 GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
C2 GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
C3 GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
C4 GGCAGAGTCTGCGACAGCGGTACACGGATTTC------------------
C5 GACAGAGCCTGCGACAGCGATACACGGATTTC------------------
C6 GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
C7 GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
*.***** ***********.************
C1 ------------------------
C2 ------------------------
C3 ------------------------
C4 ------------------------
C5 ------------------------
C6 ------------------------
C7 ------------------------
>C1
ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
--ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
AGGGATTCCGCTGCGGAATCGATTAACAAGGAATCC------------GG
TTCGATGGAGGGAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGG
CGGGGTCGTGCGGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCA
GAACATCCGGCCAGCAAATCGCCCACATCTCCA---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTTATATCACAGAACCTCAAGGAAACCACGC
TGGCGGAGAGCACCGGCGCCTCCGTATCAGCATCCACATCCACATCAACA
CCCACGTCCGCCTCTAGTAGCATCAGCGGCAGCATGCTGGAGTCGCAGCA
GACACCCAGCCAGTCCACCCCCGAAACAACAGATTCCGCCTCGTCGTCCG
TGCGCGTGAAGAAGGTACGCTTCCATCCGGACGTCAAGGAAAACGACGGC
GGGAACTGGATGAAAAGAAAGCGACGCTCCATGCATACCAAACGAACCTC
CTCGCCCAGCGGCGCTAACTGTGATGGC------ATGGAGCTGGACGGT-
-----------GAGTACGAGGACAACGATGACGATGAGCAGGAGGAGGCG
GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
CAAGCAGCACCCGTTGACATACGTGCAGCGCGTCGAACAGAACGGCGAGC
GGCTGCAGGATGGACTGCTCAGCATCGAGGATATGCTAAACGAAGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
GCCCGAGAATGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
AGGTTGAATTCCTTCTGCGCTACGAGAACCAAGGCGGACTCTTCTGGCAA
TCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCTCAAGGCCTACGA
AATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATCACGTTGCCAAAA
GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C2
ATGGATACCAAGTCCAATGATGACTCTGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
--ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
AGGGATTCCGCTGCGGAATCGATTAACAAGGAATCC------------GG
TTCGATGGAGGGAGCCGGCAAGCAGGAGGATCACAAGACTGAAGCTGCGT
CGGGTACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
GAACATCCGGCCAGCAAATCGCCCACATCTCCA---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTTATCTCACAGAACCTCAAGGAAACCACGC
TGGCGGAGAGCACCGGCGCCTCCGTATCTGCATCCACATCCACATCAACA
CCCACGTCCGCCTCCAGTAGCATCAGCGGCAGTATGTTGGAGTCGCAGCA
GACACCCGACAAGTCCACCCCCGAAACAACAGATTCCGCCTCGTCGTCCG
TCCGCGTGAAGAAGGTACGCTTCCATCCGGACGTCAAGGAGAACGACGGC
GGGAACTGGATGAAAAGAAAGCGACGCTCCATGCATACCAAACGAACCTC
CTCGCCCAGCGGCGCTAACTGTGATGGC------ATGGAGCTGGACGGT-
-----------GAGTACGAGGACAACGATGACGATGAGCAAGAGGAGGCG
GAGGAGGAGTTCGATTTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
CAAACAGCACCCGTTGACGTACGTGCAGCGCGTCGAACAGAACGGCGAGC
GGCTGCAGGATGGACTGCTCAGCATCGAGGACATGCTAAACGAAGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
GCCCGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
AGGTTGAATTTCTTCTGCGCTACGAGAACCAAGGCGGACTCTTCTGGGAA
TCGGAGGAGTTCATCAAGCGCACGTGCCCCTCGCTGCTCAAGGCCTACGA
AATGAATCGAGAACGACGTCAGCAGCGCTTGATGCATCACGTTGCCAAAC
GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C3
ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACAACG-------------
--GCGACGGGCGACGGAGACTCCACAGTCGGAGATCTAGACAACTGCAGC
AGGGATTCCGCTGCGGAATCGATGGGCAAGGGATCG------------GG
TTCGATGGAGGAAGCCGGGAAGCAGGCGGATCACAAGACTGAAGCTGTAA
CGGGGACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
GAACATCCGGCCAGCAAATCGCCCACGTCCCCA---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACTC
TGGCCGAGAGTACCGGCGCCTCAGTATCAGCATCAGCATCCACATCTACA
CCCACACCCAAGTCCGCCTCCAGCAGCAGCAGCATGCTGGAGTCGCAGCA
GACACCCAACGATTCCACCCCCGATACAACAGACTCCGCCTCATCGTCCG
TCCGCGTGAAGAAGGTACGCTTCCATCCGGATGTCAAGGAGAACGACGGC
GGCAACTGGATGAAAAGAAAGCGGCGCTCCATGCAGACCAAACGTACCTC
CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
AAGCCGAGGAGGAGTACGAGGACAATGATGACGAGGAGCAGGAGGAGGCG
GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
CAAGCAGCACCCGTTGACGTTCGTGCAGCGCGTCGAACAGAATGGGGAGC
GGCTGCAGGATGGACTGCTCAGCATCGAGGACATGCTGAACGAAGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
GCCCGAAAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
AGGTTGAATTCCTCTTGCGCTACGAAAACCAAGGCGGGCTCTTCTGGGAA
TCGGAGGAGTTCATCAAGCGTACGTGCCCCTCGCTGCTAAAGGCCTACGA
AAAGAATCGGGAACGACGTCAGCAGCGTTTGATGCATCACGTTGCCAAAC
GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C4
ATGGATACCAAGTCCAATGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACTACG-------------
--ACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGACAACTGCAGC
AGGGATTCCGCTGCGGAATCGATGGGCAAGGGATCG------------GG
TGCGACGGTGGGAGCCGGAAAGCAGGCGGATCACAAGACTGAAGCTGTGG
CGGGGACGCGGGGCGAGGGCGATCGTCCGCCGAGCAGCCAATCCCCACCA
GAACATCCGGCCAGCAAATCACCCACGTCCCCA---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACGC
TGGCCGAGAGTACCGGCGCCTCAGTATCAGCATCC------ACATCCACA
CCCACGTTCGCCTCCAGCAGC------AGCAGCTTGCTGGAGTCGCAGCA
GATACCCAACAATTCCACCCCCGAAACAACAGACTCCGCCTCGTCGTCCG
TCCGCGTGAAGAAGGTACGCTTCCATCCGGATGTCAAGGAGAACGACGGC
GGGAACTGGATGAAGAGAAAGCGACGCTCCATGCAGACCAAACGTACCTC
CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
AGGCAGAGGAGGAGTACGAGGAGAATGACGACGTGGAGCAGGAGGAGGCG
GAGGAGGAGTTCGATCTGGCCAAGACAATCGCCGAGGCGGAGGATTACCT
CAAGCAGCACCCGTTGACGTTCGTGCAACGCGTCGAACAGAACGGCGAGC
GGGTGCAGGATGGGCTGCTCAGCATCGAGGACATGCTAAACGAAGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
GCCCGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGAA
AGGTTGAATTCCTTTTGCGCTACGAAAACCAAGGCGGGCTTTTCTGGGAA
TCGGAGGAGTTCATCAAGCGTACGTGCCCCTCGCTGCTCAAGGCATACGA
AAAGAATCGGGAACGACGTCAGCAGCGTTTGATGCATCACGTTGCCAAAC
GGCAGAGTCTGCGACAGCGGTACACGGATTTC------------------
------------------------
>C5
ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACGACGACGGGAGACGGAG
ACTCCAATGCGGGCGCAATGCCCTCACCCGGGGATCTGGACAACTGCAGC
AGGGATTCCGCTGCGGAATCAATGGGCAAGGGGTCGGAATCAGTATCGGG
ACCAGAGGCGGGAGCTGGGAAGCAGGCGGATCACAAGACTGAAGCTGCGG
CGGGGACGCGGGGCGAGGGCGACAGTCCGCAGAGCAGCCAATCCCCACCA
GAACATCCGGCCAACAGCTCGCCCACATCCTCC---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACCACGC
TGGCCGAGAGTTCCGGCGCATCAGTATCGGCATCC---------------
---ACGTCCGCCTCCAGCAGC------AGCAGTCTTCTGGAGTCG---CA
GACGCCCAACAATTCCACCACAGAC---ATCGACTCC---GCGTCGTCGG
TCCGCGTGAAGAAGGTGCGCTTCCATCCGGACGTCAAGGAAAACGACGGC
GGAAACTGGGTCAAGAAAAAGCGACGCTCCACGCAGACGAAACGGGCCTC
CTCGCCCAGCGGAGCCAACTGTGATGGC------ATGGAGATGGACGGCG
AGGCCGAGGAAGAGTACGAGGCCAATGAC---GACGAGGAGGAGGAGCCG
GAGGAGGAGTTCGACCTGGCCAAGACAATCGCCGAAGCGGAGGACTACCT
CAAGCAGCATCCGCTGACGTTTGTGCAGCGCGTCGAGCAGAACGGTGAGC
GGCTGCAGGACGGACTGCTCAGCATCGAGGATATGCTAAACGAAGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGACGCATCAA
GCCGGAGAACGGCATTGAACGCATTCTGGGCAAGGAGACCAAGGCGGGCA
AGGTTGAATTCCTCTTGCGCTATGAGAACCAGGGTGGTCTTTTTTGGGAA
TCGGAGGAGTTCATTAAGCGTACATGTCCCTCTCTCCTCAAGGCCTACGA
AAAGAATCGCGAACGACGTCAGCAACGTTTGATGCACCATGTTGCCAAAC
GACAGAGCCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C6
ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTAGAGACGACG---------GGGG
ACTCCAATGTGGACACAATGGCCTCACCTGAGGAGTTGGACAACTGCAGC
CGGGATTCCGCTGCGGAATCGATGGACAAAGGG---------------GG
CGCCGAGGCGGGAGCTGGAAAACAGGCGGATCAAAAGACTGAAGCTGCGG
CGGGGACGCGGGGCGAGGGCGACAGTCCGCCAAGCAGCGTAACCCCACCA
GAACATCCGGCCAGCAACTCGCCCACATCCTCC---------TGCACTGC
CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAAACTACTC
TGGCCGAGAGTTCCGGCGCATCAGTATCGGCATCC---------------
---ACGTCCGTCTCCAGCAAC------AGCAGCCTGCTAGAGCCG---CA
GACCTCCAACAATTCCACTACAGAC---ACAGAATCCACCGCGTCCAACG
TCCGCGTGAAGAAGGTGCGCTTCCATCCAGACGTCAAGCAGAACGACGGT
GGCACCTGGGTGAAAAAGAAGCGACGCTCCACGCAGACGAAACGGGCCTC
CTCGCCCAGCGGCGCAAACTGTGATGGCGATGGCATGGAGCTGGACGGCG
AGGCC---GAGGAATACGAGGACAATGAG---GACGAAGAGGAGGAGGCG
GAGGAGGAGTTCGACCTAGCCAAGACGATCGCCGAGGCGGAGGATTACCT
TAAGCAGCACCCGTTGACATTCGTACAGCGCGTTGAGCAGAACGGCGAGC
GGCTGCAGGACGGACTGCTCAGCATCGAGGACATGCTGAACGAAGTTGGC
GAGGAGGTGGTCACTGAGTTCAACGACGAGGACTTCTTCAGGCGCATCAA
GCCCGAGAATGGCATTGAACGAATCCTGGGCAAGGAGACTAAGGCGGGCA
AGGTCGAATTTCTTTTGCGCTCCGAAAACCAGGGCCGACTTTTTTGGGAG
TCGGAGGAGTTTATTAAGCGTACGTGTCCCTCGCTGCTCAAGGCATACGA
AAAAAATCGAGAACGACGTCAACAGCGTTTGATGCACCACGTTGCCAAAC
GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C7
ATGGATACCAAGTCCAACGATGACTCGGCTGGCAGTGACTCGCTGGACAA
ATCTATGCAAATCAAGTGTGTGATGGTGGAGACGACG-------------
--ACGACGGGCGAGGGGGACTCCTCGCCGGGGGATCTGGACAACTGCAGC
AGGGATTCCGCTGCGGAATCGATTAGCAAGGAG-----------------
-GCGGAAGCTGGAGCTGGGAAGCAGGCGGATCACAAGACTGAAGCTGCGG
CGGGGACGCGGGGCGAGGGCGACAGCCCGCAGAGCAGCCAATCCCCACCA
GAACATCCGGCCAACAACTCGCCCACCTCCTCCTCCTCCTCCTGCACTGC
CTTCGAGACGAAAGTCAAGCTAATCTCACAGAACCTCAAGGAGACCACGC
TGGCCGAGAGTACCGGCGCCTCGGTCTCGGCATCC---------------
---ACGTCCGCCTCCAGCAGC------AGCAGCCTGCTGGAGTCG---CA
GACGCCCTCCAACAATTCCACC------ACTGACTCCGCCGCGTCGTCCG
TCCGCGTGAAGAAGGTGCGCTTCCATCCGGATGTAAAAGAGAACGACGGC
GGGAATTGGGTCAAGAAGAAGCGACGCTCCACGCAGACGAAGCGGGCCTC
CTCGCCCAGCGGCGCCAACTGTGATGGC------ATGGAGCTGGACGGCG
AGGAG---GAGGAGTACGAAGAT---------GAGGAGGCGGAGGAGCCG
GAGGAGGAGTTCGATCTGGCCAGGACGATCGCCGAGGCGGAGGACTACCT
CAAGCAGCACCCGCTGACCTTTGTGCAGCGCGTCGAGCAGAACGGCGAGC
GGCTGCAGGACGGACTGCTCAGCATCGAGGACATGCTGAATGAGGTCGGC
GAGGAGGTGGTCACCGAGTACAACGACGAGGACTTCTTCAGGCGCATCAA
GCCGGAGAACGGCATCGAACGCATTCTGGGCAAGGAGACCAAGGCGGGCA
AGGTTGAATTCCTCTTGCGCTATGAAAACCAGGGTGGGCTCTTTTGGGAA
TCGGAGGAGTTTATTAGGCGTACGTGCCCCTCGCTGCTCAAGGCCTACGA
AAAGAATCGCGAGCGACGTCAACAGCGTTTGATGCACCATGTTGCCAAAC
GGCAGAGTCTGCGACAGCGATACACGGATTTC------------------
------------------------
>C1
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooooTTGDGDSTVGDLDNCS
RDSAAESINKESooooGSMEGAGKQTDHKTEAAAGSCGEGDSPQSSQSPP
EHPASKSPTSPoooCTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPSQSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDGooMELDGooooEYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWQ
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDF
>C2
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooooTTGDGDSTVGDLDNCS
RDSAAESINKESooooGSMEGAGKQEDHKTEAASGTRGEGDSPQSSQSPP
EHPASKSPTSPoooCTAFETKVKLISQNLKETTLAESTGASVSASTSTST
PTSASSSISGSMLESQQTPDKSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMHTKRTSSPSGANCDGooMELDGooooEYEDNDDDEQEEA
EEEFDLAKTIAEAEDYLKQHPLTYVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEMNRERRQQRLMHHVAKRQSLRQRYTDF
>C3
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooooATGDGDSTVGDLDNCS
RDSAAESMGKGSooooGSMEEAGKQADHKTEAVTGTRGEGDSPQSSQSPP
EHPASKSPTSPoooCTAFETKVKLISQNLKETTLAESTGASVSASASTST
PTPKSASSSSSMLESQQTPNDSTPDTTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDGooMELDGEAEEEYEDNDDEEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF
>C4
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooooTTGDGDSTVGDLDNCS
RDSAAESMGKGSooooGATVGAGKQADHKTEAVAGTRGEGDRPPSSQSPP
EHPASKSPTSPoooCTAFETKVKLISQNLKETTLAESTGASVSASooTST
PTFASSSooSSLLESQQIPNNSTPETTDSASSSVRVKKVRFHPDVKENDG
GNWMKRKRRSMQTKRTSSPSGANCDGooMELDGEAEEEYEENDDVEQEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERVQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF
>C5
MDTKSNDDSAGSDSLDKSMQIKCVMVETTTGDGDSNAGAMPSPGDLDNCS
RDSAAESMGKGSESVSGPEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANSSPTSSoooCTAFETKVKLISQNLKETTLAESSGASVSASooooo
oTSASSSooSSLLESoQTPNNSTTDoIDSoASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDGooMEMDGEAEEEYEANDoDEEEEP
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF
>C6
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooGDSNVDTMASPEELDNCS
RDSAAESMDKGoooooGAEAGAGKQADQKTEAAAGTRGEGDSPPSSVTPP
EHPASNSPTSSoooCTAFETKVKLISQNLKETTLAESSGASVSASooooo
oTSVSSNooSSLLEPoQTSNNSTTDoTESTASNVRVKKVRFHPDVKQNDG
GTWVKKKRRSTQTKRASSPSGANCDGDGMELDGEAoEEYEDNEoDEEEEA
EEEFDLAKTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEFNDEDFFRRIKPENGIERILGKETKAGKVEFLLRSENQGRLFWE
SEEFIKRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF
>C7
MDTKSNDDSAGSDSLDKSMQIKCVMVETToooooTTGEGDSSPGDLDNCS
RDSAAESISKEooooooAEAGAGKQADHKTEAAAGTRGEGDSPQSSQSPP
EHPANNSPTSSSSSCTAFETKVKLISQNLKETTLAESTGASVSASooooo
oTSASSSooSSLLESoQTPSNNSTooTDSAASSVRVKKVRFHPDVKENDG
GNWVKKKRRSTQTKRASSPSGANCDGooMELDGEEoEEYEDoooEEAEEP
EEEFDLARTIAEAEDYLKQHPLTFVQRVEQNGERLQDGLLSIEDMLNEVG
EEVVTEYNDEDFFRRIKPENGIERILGKETKAGKVEFLLRYENQGGLFWE
SEEFIRRTCPSLLKAYEKNRERRQQRLMHHVAKRQSLRQRYTDF
MrBayes v3.2.2 x64
(Bayesian Analysis of Phylogeny)
Distributed under the GNU General Public License
Type "help" or "help <command>" for information
on the commands that are available.
Type "about" for authorship and general
information about the program.
Executing file "/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
UNIX line termination
Longest line length = 63
Parsing file
Expecting NEXUS formatted file
Reading data block
Allocated taxon set
Allocated matrix
Defining new matrix with 7 taxa and 1224 characters
Missing data coded as ?
Data matrix is interleaved
Data is Dna
Gaps coded as -
Matching characters coded as .
Taxon 1 -> C1
Taxon 2 -> C2
Taxon 3 -> C3
Taxon 4 -> C4
Taxon 5 -> C5
Taxon 6 -> C6
Taxon 7 -> C7
Successfully read matrix
Setting default partition (does not divide up characters)
Setting model defaults
Seed (for generating default start values) = 1480111928
Setting output file names to "/opt/ADOPS/1/A16-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
Exiting data block
Reading mrbayes block
Setting autoclose to yes
Setting nowarnings to yes
Defining charset called first_pos
Defining charset called second_pos
Defining charset called third_pos
Defining partition called by_codon
Setting by_codon as the partition, dividing characters into 3 parts.
Setting model defaults
Seed (for generating default start values) = 78767258
Setting Nst to 6 for partition 1
Setting Nst to 6 for partition 2
Setting Nst to 6 for partition 3
Setting Rates to Invgamma for partition 1
Setting Rates to Invgamma for partition 2
Setting Rates to Invgamma for partition 3
Successfully set likelihood model parameters to all
applicable data partitions
Unlinking
Setting number of generations to 1000000
Running Markov chain
MCMC stamp = 9220946992
Seed = 1736101419
Swapseed = 1480111928
Model settings:
Settings for partition 1 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
Gamma shape parameter is exponentially
distributed with parameter (2.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Gamma distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Settings for partition 2 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
Gamma shape parameter is exponentially
distributed with parameter (2.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Gamma distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Settings for partition 3 --
Datatype = DNA
Nucmodel = 4by4
Nst = 6
Substitution rates, expressed as proportions
of the rate sum, have a Dirichlet prior
(1.00,1.00,1.00,1.00,1.00,1.00)
Covarion = No
# States = 4
State frequencies have a Dirichlet prior
(1.00,1.00,1.00,1.00)
Rates = Invgamma
Gamma shape parameter is exponentially
distributed with parameter (2.00).
Proportion of invariable sites is uniformly dist-
ributed on the interval (0.00,1.00).
Gamma distribution is approximated using 4 categories.
Likelihood summarized over all rate categories in each generation.
Active parameters:
Partition(s)
Parameters 1 2 3
------------------------
Revmat 1 1 1
Statefreq 2 2 2
Shape 3 3 4
Pinvar 5 5 5
Ratemultiplier 6 6 6
Topology 7 7 7
Brlens 8 8 8
------------------------
Parameters can be linked or unlinked across partitions using 'link' and 'unlink'
1 -- Parameter = Revmat{all}
Type = Rates of reversible rate matrix
Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
Partitions = All
2 -- Parameter = Pi{all}
Type = Stationary state frequencies
Prior = Dirichlet
Partitions = All
3 -- Parameter = Alpha{1,2}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(2.00)
Partitions = 1 and 2
4 -- Parameter = Alpha{3}
Type = Shape of scaled gamma distribution of site rates
Prior = Exponential(2.00)
Partition = 3
5 -- Parameter = Pinvar{all}
Type = Proportion of invariable sites
Prior = Uniform(0.00,1.00)
Partitions = All
6 -- Parameter = Ratemultiplier{all}
Type = Partition-specific rate multiplier
Prior = Fixed(1.0)
Partitions = All
7 -- Parameter = Tau{all}
Type = Topology
Prior = All topologies equally probable a priori
Partitions = All
Subparam. = V{all}
8 -- Parameter = V{all}
Type = Branch lengths
Prior = Unconstrained:Exponential(10.0)
Partitions = All
The MCMC sampler will use the following moves:
With prob. Chain will use move
1.06 % Dirichlet(Revmat{all})
1.06 % Slider(Revmat{all})
1.06 % Dirichlet(Pi{all})
1.06 % Slider(Pi{all})
2.13 % Multiplier(Alpha{1,2})
2.13 % Multiplier(Alpha{3})
2.13 % Slider(Pinvar{all})
10.64 % ExtSPR(Tau{all},V{all})
10.64 % ExtTBR(Tau{all},V{all})
10.64 % NNI(Tau{all},V{all})
10.64 % ParsSPR(Tau{all},V{all})
31.91 % Multiplier(V{all})
10.64 % Nodeslider(V{all})
4.26 % TLMultiplier(V{all})
Division 1 has 67 unique site patterns
Division 2 has 59 unique site patterns
Division 3 has 121 unique site patterns
Initializing conditional likelihoods
Using standard SSE likelihood calculator for division 1 (single-precision)
Using standard SSE likelihood calculator for division 2 (single-precision)
Using standard SSE likelihood calculator for division 3 (single-precision)
Initializing invariable-site conditional likelihoods
Initial log likelihoods and log prior probs for run 1:
Chain 1 -- -4145.360039 -- -24.557203
Chain 2 -- -4225.909513 -- -24.557203
Chain 3 -- -4215.536584 -- -24.557203
Chain 4 -- -4251.715813 -- -24.557203
Initial log likelihoods and log prior probs for run 2:
Chain 1 -- -4236.624107 -- -24.557203
Chain 2 -- -4276.573338 -- -24.557203
Chain 3 -- -4136.512667 -- -24.557203
Chain 4 -- -4155.739116 -- -24.557203
Using a relative burnin of 25.0 % for diagnostics
Chain results (1000000 generations requested):
0 -- [-4145.360] (-4225.910) (-4215.537) (-4251.716) * [-4236.624] (-4276.573) (-4136.513) (-4155.739)
500 -- (-3415.015) (-3430.673) (-3432.771) [-3398.062] * [-3391.990] (-3417.539) (-3421.400) (-3430.127) -- 0:00:00
1000 -- (-3393.450) (-3400.188) (-3402.725) [-3371.267] * [-3358.729] (-3378.514) (-3387.682) (-3392.430) -- 0:00:00
1500 -- [-3368.588] (-3395.436) (-3377.276) (-3366.926) * [-3336.675] (-3343.456) (-3382.406) (-3360.774) -- 0:00:00
2000 -- (-3352.438) (-3374.659) (-3375.567) [-3340.741] * [-3335.876] (-3344.656) (-3358.732) (-3337.172) -- 0:08:19
2500 -- [-3337.745] (-3350.729) (-3351.405) (-3347.619) * (-3331.963) [-3333.895] (-3358.327) (-3337.152) -- 0:06:39
3000 -- [-3334.703] (-3343.675) (-3355.437) (-3343.296) * (-3334.931) (-3341.735) (-3345.154) [-3331.406] -- 0:05:32
3500 -- (-3334.364) (-3358.144) (-3342.459) [-3334.169] * (-3332.076) (-3333.414) (-3346.715) [-3332.278] -- 0:09:29
4000 -- (-3332.136) (-3344.135) (-3332.383) [-3333.893] * (-3336.146) (-3336.860) [-3335.658] (-3333.921) -- 0:08:18
4500 -- [-3333.230] (-3332.832) (-3334.034) (-3330.843) * (-3346.957) (-3339.349) [-3339.192] (-3340.643) -- 0:07:22
5000 -- (-3330.252) [-3327.847] (-3334.489) (-3325.450) * (-3336.822) [-3341.991] (-3334.636) (-3334.560) -- 0:06:38
Average standard deviation of split frequencies: 0.026189
5500 -- (-3339.599) (-3328.862) [-3335.651] (-3338.092) * (-3335.236) (-3343.534) [-3336.167] (-3334.378) -- 0:09:02
6000 -- [-3336.945] (-3335.493) (-3332.613) (-3334.686) * (-3332.205) (-3328.532) [-3340.433] (-3332.906) -- 0:08:17
6500 -- (-3338.521) [-3333.040] (-3334.428) (-3333.623) * (-3335.103) [-3332.415] (-3332.542) (-3333.649) -- 0:07:38
7000 -- (-3334.443) (-3339.959) [-3337.686] (-3334.778) * [-3331.670] (-3329.206) (-3337.956) (-3333.572) -- 0:07:05
7500 -- (-3333.381) (-3344.019) (-3335.940) [-3330.435] * [-3334.832] (-3328.738) (-3329.899) (-3331.626) -- 0:08:49
8000 -- (-3337.455) (-3333.971) [-3334.426] (-3334.964) * (-3340.066) (-3331.069) (-3325.972) [-3331.515] -- 0:08:16
8500 -- (-3331.528) (-3335.095) (-3331.805) [-3332.538] * (-3331.532) (-3328.976) (-3337.014) [-3332.521] -- 0:07:46
9000 -- [-3328.876] (-3331.819) (-3329.765) (-3333.594) * (-3328.638) [-3328.246] (-3332.193) (-3338.325) -- 0:07:20
9500 -- (-3331.973) [-3328.483] (-3335.216) (-3330.154) * (-3335.462) [-3328.754] (-3340.402) (-3334.067) -- 0:08:41
10000 -- (-3334.557) [-3337.525] (-3334.944) (-3334.232) * (-3337.610) [-3338.878] (-3338.674) (-3333.305) -- 0:08:15
Average standard deviation of split frequencies: 0.058926
10500 -- (-3341.475) (-3331.916) [-3332.429] (-3333.092) * (-3337.895) (-3331.511) (-3337.666) [-3334.880] -- 0:07:51
11000 -- (-3334.973) (-3329.361) [-3332.008] (-3334.624) * (-3339.100) (-3342.514) [-3328.765] (-3331.881) -- 0:08:59
11500 -- (-3336.069) (-3332.972) (-3335.679) [-3337.144] * (-3332.536) (-3327.511) (-3331.180) [-3329.342] -- 0:08:35
12000 -- [-3336.749] (-3340.014) (-3333.952) (-3331.747) * (-3333.546) (-3333.541) (-3340.789) [-3331.930] -- 0:08:14
12500 -- [-3330.086] (-3337.939) (-3331.992) (-3335.036) * [-3331.748] (-3334.785) (-3336.447) (-3336.694) -- 0:07:54
13000 -- (-3336.977) (-3334.967) (-3335.999) [-3328.322] * (-3334.704) [-3331.436] (-3333.266) (-3337.127) -- 0:08:51
13500 -- (-3327.564) (-3333.460) (-3339.661) [-3330.571] * (-3333.462) (-3331.212) (-3329.167) [-3328.468] -- 0:08:31
14000 -- [-3340.279] (-3329.437) (-3336.351) (-3333.990) * [-3328.641] (-3329.344) (-3336.769) (-3332.550) -- 0:08:13
14500 -- (-3338.375) (-3343.733) (-3330.768) [-3338.294] * (-3328.980) (-3338.982) (-3329.116) [-3333.449] -- 0:07:55
15000 -- (-3334.295) (-3342.707) (-3332.790) [-3330.444] * (-3326.191) (-3335.960) [-3334.617] (-3330.219) -- 0:08:45
Average standard deviation of split frequencies: 0.049105
15500 -- (-3333.927) (-3332.888) (-3334.561) [-3330.482] * (-3333.320) [-3335.277] (-3331.779) (-3330.745) -- 0:08:28
16000 -- [-3331.974] (-3337.697) (-3331.248) (-3336.527) * (-3330.257) (-3335.728) [-3330.944] (-3336.333) -- 0:08:12
16500 -- (-3329.320) [-3331.532] (-3335.254) (-3339.510) * (-3329.780) (-3336.772) (-3330.570) [-3331.273] -- 0:07:56
17000 -- (-3336.280) (-3334.418) [-3331.157] (-3337.683) * (-3334.919) [-3336.779] (-3335.189) (-3328.496) -- 0:08:40
17500 -- (-3337.949) (-3335.522) (-3334.388) [-3333.197] * [-3331.838] (-3330.864) (-3336.625) (-3332.584) -- 0:08:25
18000 -- [-3329.911] (-3335.654) (-3342.585) (-3333.822) * [-3329.754] (-3346.009) (-3344.670) (-3335.967) -- 0:08:11
18500 -- [-3332.989] (-3340.706) (-3332.878) (-3332.382) * (-3334.514) [-3334.128] (-3332.109) (-3326.393) -- 0:07:57
19000 -- [-3330.759] (-3337.226) (-3330.132) (-3335.084) * (-3331.127) (-3336.955) (-3335.497) [-3330.293] -- 0:08:36
19500 -- (-3333.362) (-3337.908) [-3329.621] (-3334.316) * (-3332.767) [-3334.870] (-3337.222) (-3333.978) -- 0:08:22
20000 -- (-3339.356) (-3332.265) (-3330.569) [-3337.851] * (-3340.014) [-3340.026] (-3341.949) (-3330.025) -- 0:08:10
Average standard deviation of split frequencies: 0.045620
20500 -- [-3334.262] (-3334.529) (-3334.116) (-3335.773) * (-3331.794) (-3340.817) [-3331.884] (-3334.751) -- 0:07:57
21000 -- [-3330.111] (-3330.169) (-3332.019) (-3334.537) * (-3335.140) (-3336.130) (-3335.062) [-3334.602] -- 0:08:32
21500 -- (-3337.642) (-3338.009) [-3329.409] (-3330.645) * [-3332.518] (-3328.735) (-3333.884) (-3337.714) -- 0:08:20
22000 -- (-3332.776) (-3334.119) [-3337.776] (-3334.705) * [-3330.750] (-3335.493) (-3333.640) (-3331.771) -- 0:08:09
22500 -- (-3338.452) (-3335.249) [-3333.535] (-3345.213) * [-3329.591] (-3333.620) (-3337.745) (-3329.824) -- 0:07:57
23000 -- (-3340.866) (-3336.673) [-3330.720] (-3341.122) * [-3333.674] (-3335.000) (-3332.835) (-3332.965) -- 0:07:47
23500 -- (-3341.618) (-3339.180) [-3333.826] (-3331.988) * (-3344.397) (-3343.196) [-3331.819] (-3336.488) -- 0:08:18
24000 -- (-3329.322) [-3340.763] (-3331.685) (-3333.374) * (-3330.734) (-3328.025) (-3333.869) [-3329.395] -- 0:08:08
24500 -- (-3334.062) (-3331.848) [-3330.332] (-3336.691) * (-3340.704) (-3331.910) (-3339.462) [-3333.924] -- 0:07:57
25000 -- (-3337.444) [-3334.268] (-3332.288) (-3333.078) * (-3331.331) (-3335.437) (-3336.352) [-3329.926] -- 0:07:48
Average standard deviation of split frequencies: 0.048349
25500 -- (-3335.584) (-3334.317) (-3330.518) [-3332.043] * (-3346.055) (-3329.757) (-3337.986) [-3333.179] -- 0:08:16
26000 -- (-3335.510) (-3338.004) [-3331.325] (-3335.947) * [-3339.943] (-3341.510) (-3329.339) (-3333.456) -- 0:08:07
26500 -- (-3345.116) (-3334.473) [-3336.964] (-3334.914) * (-3335.450) (-3337.908) [-3331.872] (-3340.771) -- 0:07:57
27000 -- (-3332.384) [-3329.770] (-3338.418) (-3333.911) * (-3337.266) [-3337.430] (-3330.634) (-3343.166) -- 0:07:48
27500 -- (-3331.326) (-3331.120) (-3333.636) [-3333.355] * (-3331.750) (-3334.322) (-3337.129) [-3335.457] -- 0:08:15
28000 -- [-3328.656] (-3342.722) (-3328.825) (-3333.373) * (-3332.210) (-3332.314) (-3334.649) [-3339.898] -- 0:08:06
28500 -- (-3331.229) [-3331.665] (-3335.264) (-3331.290) * [-3329.083] (-3334.799) (-3336.265) (-3335.296) -- 0:07:57
29000 -- (-3334.404) (-3333.799) (-3333.952) [-3330.533] * (-3328.111) (-3330.392) (-3339.889) [-3329.263] -- 0:07:48
29500 -- [-3330.505] (-3330.569) (-3330.998) (-3338.009) * (-3331.326) (-3333.919) (-3335.629) [-3341.171] -- 0:08:13
30000 -- (-3335.105) (-3329.780) (-3328.900) [-3334.806] * (-3335.997) [-3336.430] (-3349.527) (-3337.852) -- 0:08:05
Average standard deviation of split frequencies: 0.056364
30500 -- (-3333.905) (-3342.242) (-3333.061) [-3333.189] * (-3344.015) (-3331.601) (-3335.066) [-3336.847] -- 0:07:56
31000 -- (-3337.353) [-3329.719] (-3335.442) (-3340.564) * [-3331.572] (-3336.768) (-3334.603) (-3327.807) -- 0:07:48
31500 -- (-3331.233) (-3331.427) [-3339.864] (-3344.210) * (-3343.979) (-3333.941) [-3333.859] (-3328.516) -- 0:08:11
32000 -- [-3329.843] (-3342.643) (-3329.271) (-3331.845) * (-3335.038) (-3334.402) [-3330.974] (-3334.162) -- 0:08:04
32500 -- (-3330.914) [-3332.830] (-3333.345) (-3337.250) * (-3332.082) (-3342.401) (-3329.633) [-3334.395] -- 0:07:56
33000 -- (-3333.478) [-3332.833] (-3327.482) (-3333.559) * (-3335.122) (-3334.221) [-3330.049] (-3344.685) -- 0:07:48
33500 -- (-3340.854) (-3330.120) (-3340.006) [-3333.193] * (-3334.398) (-3331.860) (-3329.002) [-3338.791] -- 0:08:10
34000 -- (-3329.508) (-3332.841) (-3336.126) [-3332.330] * (-3336.758) (-3337.027) [-3334.354] (-3343.640) -- 0:08:03
34500 -- [-3341.530] (-3334.270) (-3333.454) (-3330.744) * [-3337.735] (-3340.156) (-3327.082) (-3334.307) -- 0: 