--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 25 18:47:20 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/5-HT1B-PD/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -5367.87         -5383.02
2      -5368.26         -5384.95
--------------------------------------
TOTAL    -5368.05         -5384.39
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.696466    0.002756    0.598095    0.802786    0.694916   1149.96   1170.20    1.000
r(A<->C){all}   0.131392    0.000333    0.096617    0.167397    0.130746   1153.99   1184.39    1.001
r(A<->G){all}   0.216703    0.000552    0.168528    0.261014    0.215493   1036.30   1053.99    1.000
r(A<->T){all}   0.104408    0.000420    0.067900    0.147090    0.103821   1039.66   1053.19    1.000
r(C<->G){all}   0.098156    0.000184    0.070415    0.122686    0.097578    996.05   1050.13    1.000
r(C<->T){all}   0.389541    0.000961    0.327352    0.448462    0.389535    884.50    913.15    1.000
r(G<->T){all}   0.059800    0.000174    0.034476    0.085715    0.059404   1244.41   1264.32    1.000
pi(A){all}      0.219814    0.000088    0.201392    0.237052    0.219856   1024.45   1094.20    1.000
pi(C){all}      0.275230    0.000098    0.256449    0.294515    0.275270   1179.90   1183.01    1.000
pi(G){all}      0.303192    0.000111    0.283242    0.323936    0.302937    975.78   1084.36    1.000
pi(T){all}      0.201764    0.000089    0.182569    0.218784    0.201763    962.84   1081.21    1.000
alpha{1,2}      0.185558    0.000637    0.139740    0.236087    0.183790   1198.46   1285.93    1.000
alpha{3}        2.469226    0.547439    1.229575    3.950397    2.367161   1071.45   1236.49    1.000
pinvar{all}     0.447422    0.001801    0.358094    0.520550    0.450447   1196.78   1245.59    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4657.839668
Model 2: PositiveSelection	-4657.839668
Model 0: one-ratio	-4740.208787
Model 3: discrete	-4657.138859
Model 7: beta	-4657.524296
Model 8: beta&w>1	-4657.453938


Model 0 vs 1	164.7382379999999

Model 2 vs 1	0.0

Model 8 vs 7	0.14071599999988393
>C1
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG
VGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGG
VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL
TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG
RKAAARARSAKIooooooo
>C2
MLKTVTTAMAADDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSVSGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG
VGCLTTTSPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGG
VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL
TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG
RKAAARARSAKIooooooo
>C3
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSENGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR
NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG
VGCLTTTSPSEKALSGAGTVGGAVAGGSGSGSGEEGAGTEGKNAGVGLGG
VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL
TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG
RKAAARARSAKIooooooo
>C4
MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
NTTNLSQIVWNRSENGNGNSNIFDLVDDEQKRAAVQFWLLVKMIAMAVVL
GLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLG
AVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDY
NNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD
VGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETD
CDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKRMRIC
FGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIA
MGGVACLTTTSPSEKAVSGAGAGTGTGVGAGAGGSGSGSGEEGPGTEGKS
AGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWL
PFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRA
FKRILFGRKAAARARSAKI
>C5
MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT
NLSQIAWNRSENGNGNSNVFDPVDDEQKRAAVQFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
AVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKRMRICFGR
NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG
VGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGPGTEGKNA
GVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLP
FFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAF
KRILFGRKAAARARSAKIo
>C6
MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT
SNLSQIVWNRTENGNGNGNIFDLDAEQRATVEFWLLVKMIAMAVVLGLMI
LVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYE
ISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLR
TPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQ
IFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDST
VRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKRMRICFGRN
TNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGA
GCLTTTSPSEKPGAAGGGGGSGEVGAGTEGSSPGKNAGVGLGGVLASIAN
PHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKE
CEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAARA
RSAKIoooooooooooooo
>C7
MLKTVTTAMAAADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIAWNRTANGNGNGNGNSNIFDLDEQQRAAVEFWLLVKMIAMAVVLG
LMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGA
VYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYN
NLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCMVSQDV
GYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDC
DSTVRELKKERGKRRAERKRLEAGERTPGGGEADSQLQRRPRKRMRICFG
RNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMG
GAGCLTTTSPSEKLGAGGGGPGGGAGGEAAGTEGSSPGKNAGVGLGGVLA
SIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMS
LCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKA
AARARSAKIoooooooooo
>C8
MLKTVTTAMAAADDNVPASILEIELPAILLNESLFIELNGNLTQLVDTTS
NLSQIVWNRSKLENGNDNNSNIFDLDAEQRAAVEFWLLVKMIAMAVVLGL
MILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAV
YEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNN
LRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVG
YQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCD
STVREMKKERGKRRAERKRLEAGERTPADGEADSQMQRRPRKRMRICFGR
NTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG
AGCLTTTSPSEKPGAGGSGEEVSGTEGTSPGKNAGVGLGGVLASIANPHQ
KLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEI
HTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAARARSA
KIooooooooooooooooo
>C9
MLKTVTTAMAVADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT
NLSQIVWNRSENGNGNSNIFDLDDEERAAVEFWLLVKMIAMAVVLGLMIL
VTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEI
SNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLRT
PRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQI
FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSTV
REIKKERGKRRADRKRQEAGERTPVSGEADTQVQRRPLKRMRIYFGRNTN
TANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGAGC
LTTTSPPERGGGGGGAGIGGPGGGGETAAAGTEGSSPGKNAGVGLGGVLA
SIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMS
LCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKA
AARARSAKIoooooooooo
>C10
MLKTVTTAMAATDDDVAASILEIELPAILLNESLFIELNGNLTQLLDTTS
NLSQIIWNRSENGYGSGNTSTLDMDAEQRAAVEFWLLVKMIAMAVVLGLM
ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY
EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL
RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY
QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS
TVRELKKERGKRRAERKRQEAGERTPGGGEADAQLQRRPRKRIRICFGRN
TNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGA
GCLATTLPSANEGGGGGGGVAGGAGGAGTEGSSPGKSAGVGLGGVLASIA
NPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCK
ECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAAR
ARSAKIooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=592 

C1              MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C2              MLKTVTTAMAAD-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C3              MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C4              MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C5              MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT
C6              MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT
C7              MLKTVTTAMAAADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C8              MLKTVTTAMAAADDN-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C9              MLKTVTTAMAVADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT
C10             MLKTVTTAMAATDDD-VAASILEIELPAILLNESLFIELNGNLTQLLDTT
                ********* .  *: :.****************************:***

C1              --SNLSQIVWNRSINGNGNSN----TFDLVDDEQERAAVEFWLLVKMIAM
C2              --SNLSQIVWNRSVSGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM
C3              --SNLSQIVWNRSENGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM
C4              NTTNLSQIVWNRSENGNGNSN----IFDLVDDEQKRAAVQFWLLVKMIAM
C5              --TNLSQIAWNRSENGNGNSN----VFDPVDDEQKRAAVQFWLLVKMIAM
C6              --SNLSQIVWNRTENGNGNGN----IFDLDAEQ--RATVEFWLLVKMIAM
C7              --SNLSQIAWNRTANGNGNGNGNSNIFDLDEQQ--RAAVEFWLLVKMIAM
C8              --SNLSQIVWNRSKLENGNDN-NSNIFDLDAEQ--RAAVEFWLLVKMIAM
C9              --TNLSQIVWNRSEN--GNGN--SNIFDLDDEE--RAAVEFWLLVKMIAM
C10             --SNLSQIIWNRSENGYGSGN--TSTLDMDAEQ--RAAVEFWLLVKMIAM
                  :***** ***:    *..*     :*   ::  **:*:**********

C1              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C2              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C3              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C4              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C5              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C6              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C7              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C8              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C9              AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
C10             AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV
                **************************************************

C1              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C2              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C3              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C4              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C5              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C6              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C7              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C8              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C9              MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
C10             MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT
                **************************************************

C1              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C2              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C3              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C4              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C5              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C6              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C7              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCM
C8              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C9              NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
C10             NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM
                **************************************:***********

C1              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C2              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C3              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C4              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C5              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C6              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C7              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C8              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C9              VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
C10             VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL
                **************************************************

C1              TETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C2              TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C3              TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR
C4              TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKR
C5              TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKR
C6              TETDCDSTVRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKR
C7              TETDCDSTVRELKKERGKRRAERKRLEAGERTPGGGE-ADSQLQRRPRKR
C8              TETDCDSTVREMKKERGKRRAERKRLEAGERTPADGE-ADSQMQRRPRKR
C9              TETDCDSTVREIKKERGKRRADRKRQEAGERTPVSGE-ADTQVQRRPLKR
C10             TETDCDSTVRELKKERGKRRAERKRQEAGERTPGGGE-ADAQLQRRPRKR
                *******:***:****.****:*** ******* .*: :. *:***. **

C1              MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C2              MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C3              MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C4              MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C5              MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C6              MRICFGRNTNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C7              MRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C8              MRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C9              MRIYFGRNTNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
C10             IRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA
                :** *********:************************************

C1              QSIAMGGVGCLTTTTPSEKALSGAGT------VAGAVAGGSGSGSGEEGA
C2              QSIAMGGVGCLTTTSPSEKALSGAGT------VAGAVAGGSGSGSGEEGA
C3              QSIAMGGVGCLTTTSPSEKALSGAGT------VGGAVAGGSGSGSGEEGA
C4              QSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAG--AGGSGSGSGEEGP
C5              QSIAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGP
C6              QSIAMGGAGCLTTTSPSEKPGAAGGG-------GGSGEVG----AGTEGS
C7              QSIAMGGAGCLTTTSPSEKLGAGGGGP-----GGGAGGEA----AGTEGS
C8              QSIAMGGAGCLTTTSPSEKPGAGG-----------SGEEV----SGTEGT
C9              QSIAMGGAGCLTTTSPPERGGGGGGAG-----IGGPGGGGETAAAGTEGS
C10             QSIAMGGAGCLATTLPSANEGGGGGGG-----VAGGAGG-----AGTEGS
                *******..**::* *. .  ...                    :* **.

C1              GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C2              GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C3              GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C4              GTEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C5              GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C6              -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C7              -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C8              -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C9              -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
C10             -SPGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA
                 : **.********************************************

C1              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C2              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C3              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C4              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C5              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C6              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C7              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C8              FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
C9              FVICWLPFFVMALTMSLCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFN
C10             FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN
                ************************:*************************

C1              PEFRRAFKRILFGRKAAARARSAKIooooooo----------
C2              PEFRRAFKRILFGRKAAARARSAKIooooooo----------
C3              PEFRRAFKRILFGRKAAARARSAKIooooooo----------
C4              PEFRRAFKRILFGRKAAARARSAKI-----------------
C5              PEFRRAFKRILFGRKAAARARSAKIo----------------
C6              PEFRRAFKRILFGRKAAARARSAKIoooooooooooooo---
C7              PEFRRAFKRILFGRKAAARARSAKIoooooooooo-------
C8              PEFRRAFKRILFGRKAAARARSAKIooooooooooooooooo
C9              PEFRRAFKRILFGRKAAARARSAKIoooooooooo-------
C10             PEFRRAFKRILFGRKAAARARSAKIooooooooooooo----
                *************************                 




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  569 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  569 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0]