--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Nov 25 18:47:20 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/1/5-HT1B-PD/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -5367.87 -5383.02 2 -5368.26 -5384.95 -------------------------------------- TOTAL -5368.05 -5384.39 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.696466 0.002756 0.598095 0.802786 0.694916 1149.96 1170.20 1.000 r(A<->C){all} 0.131392 0.000333 0.096617 0.167397 0.130746 1153.99 1184.39 1.001 r(A<->G){all} 0.216703 0.000552 0.168528 0.261014 0.215493 1036.30 1053.99 1.000 r(A<->T){all} 0.104408 0.000420 0.067900 0.147090 0.103821 1039.66 1053.19 1.000 r(C<->G){all} 0.098156 0.000184 0.070415 0.122686 0.097578 996.05 1050.13 1.000 r(C<->T){all} 0.389541 0.000961 0.327352 0.448462 0.389535 884.50 913.15 1.000 r(G<->T){all} 0.059800 0.000174 0.034476 0.085715 0.059404 1244.41 1264.32 1.000 pi(A){all} 0.219814 0.000088 0.201392 0.237052 0.219856 1024.45 1094.20 1.000 pi(C){all} 0.275230 0.000098 0.256449 0.294515 0.275270 1179.90 1183.01 1.000 pi(G){all} 0.303192 0.000111 0.283242 0.323936 0.302937 975.78 1084.36 1.000 pi(T){all} 0.201764 0.000089 0.182569 0.218784 0.201763 962.84 1081.21 1.000 alpha{1,2} 0.185558 0.000637 0.139740 0.236087 0.183790 1198.46 1285.93 1.000 alpha{3} 2.469226 0.547439 1.229575 3.950397 2.367161 1071.45 1236.49 1.000 pinvar{all} 0.447422 0.001801 0.358094 0.520550 0.450447 1196.78 1245.59 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -4657.839668 Model 2: PositiveSelection -4657.839668 Model 0: one-ratio -4740.208787 Model 3: discrete -4657.138859 Model 7: beta -4657.524296 Model 8: beta&w>1 -4657.453938 Model 0 vs 1 164.7382379999999 Model 2 vs 1 0.0 Model 8 vs 7 0.14071599999988393
>C1 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSINGNGNSNTFDLVDDEQERAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG VGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGG VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG RKAAARARSAKIooooooo >C2 MLKTVTTAMAADDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSVSGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG VGCLTTTSPSEKALSGAGTVAGAVAGGSGSGSGEEGAGTEGKNAGVGLGG VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG RKAAARARSAKIooooooo >C3 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSENGNGNSNTFDLVDDEQQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGR NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG VGCLTTTSPSEKALSGAGTVGGAVAGGSGSGSGEEGAGTEGKNAGVGLGG VLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMAL TMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFG RKAAARARSAKIooooooo >C4 MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT NTTNLSQIVWNRSENGNGNSNIFDLVDDEQKRAAVQFWLLVKMIAMAVVL GLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLG AVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDY NNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQD VGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETD CDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKRMRIC FGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIA MGGVACLTTTSPSEKAVSGAGAGTGTGVGAGAGGSGSGSGEEGPGTEGKS AGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWL PFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRA FKRILFGRKAAARARSAKI >C5 MLKTVTTAMAAGDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT NLSQIAWNRSENGNGNSNVFDPVDDEQKRAAVQFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS AVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKRMRICFGR NTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG VGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGPGTEGKNA GVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLP FFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAF KRILFGRKAAARARSAKIo >C6 MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT SNLSQIVWNRTENGNGNGNIFDLDAEQRATVEFWLLVKMIAMAVVLGLMI LVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYE ISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLR TPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQ IFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDST VRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKRMRICFGRN TNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGA GCLTTTSPSEKPGAAGGGGGSGEVGAGTEGSSPGKNAGVGLGGVLASIAN PHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKE CEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAARA RSAKIoooooooooooooo >C7 MLKTVTTAMAAADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIAWNRTANGNGNGNGNSNIFDLDEQQRAAVEFWLLVKMIAMAVVLG LMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGA VYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYN NLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCMVSQDV GYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDC DSTVRELKKERGKRRAERKRLEAGERTPGGGEADSQLQRRPRKRMRICFG RNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMG GAGCLTTTSPSEKLGAGGGGPGGGAGGEAAGTEGSSPGKNAGVGLGGVLA SIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMS LCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKA AARARSAKIoooooooooo >C8 MLKTVTTAMAAADDNVPASILEIELPAILLNESLFIELNGNLTQLVDTTS NLSQIVWNRSKLENGNDNNSNIFDLDAEQRAAVEFWLLVKMIAMAVVLGL MILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAV YEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNN LRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVG YQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCD STVREMKKERGKRRAERKRLEAGERTPADGEADSQMQRRPRKRMRICFGR NTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGG AGCLTTTSPSEKPGAGGSGEEVSGTEGTSPGKNAGVGLGGVLASIANPHQ KLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEI HTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAARARSA KIooooooooooooooooo >C9 MLKTVTTAMAVADDDVPASILEIELPAILLNESLFIELNGNLTQLVDTTT NLSQIVWNRSENGNGNSNIFDLDDEERAAVEFWLLVKMIAMAVVLGLMIL VTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEI SNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNLRT PRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGYQI FATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDSTV REIKKERGKRRADRKRQEAGERTPVSGEADTQVQRRPLKRMRIYFGRNTN TANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGAGC LTTTSPPERGGGGGGAGIGGPGGGGETAAAGTEGSSPGKNAGVGLGGVLA SIANPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMS LCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKA AARARSAKIoooooooooo >C10 MLKTVTTAMAATDDDVAASILEIELPAILLNESLFIELNGNLTQLLDTTS NLSQIIWNRSENGYGSGNTSTLDMDAEQRAAVEFWLLVKMIAMAVVLGLM ILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVY EISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTNIDYNNL RTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCMVSQDVGY QIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCDS TVRELKKERGKRRAERKRQEAGERTPGGGEADAQLQRRPRKRIRICFGRN TNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLAQSIAMGGA GCLATTLPSANEGGGGGGGVAGGAGGAGTEGSSPGKSAGVGLGGVLASIA NPHQKLAKRRQLLEAKRERKAAQTLAIITGAFVICWLPFFVMALTMSLCK ECEIHTAVASLFLWLGYFNSTLNPVIYTIFNPEFRRAFKRILFGRKAAAR ARSAKIooooooooooooo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=592 C1 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C2 MLKTVTTAMAAD-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C3 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C4 MLKTVTTAMMAASDDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C5 MLKTVTTAMAAG-DDDVPASILEIELPAILLNESLFIELNGNLTQLVDTT C6 MLKTVTTAMAAADDDDIPASILEIELPAILLNESLFIELNGNLTQLVDTT C7 MLKTVTTAMAAADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C8 MLKTVTTAMAAADDN-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C9 MLKTVTTAMAVADDD-VPASILEIELPAILLNESLFIELNGNLTQLVDTT C10 MLKTVTTAMAATDDD-VAASILEIELPAILLNESLFIELNGNLTQLLDTT ********* . *: :.****************************:*** C1 --SNLSQIVWNRSINGNGNSN----TFDLVDDEQERAAVEFWLLVKMIAM C2 --SNLSQIVWNRSVSGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM C3 --SNLSQIVWNRSENGNGNSN----TFDLVDDEQQRAAVEFWLLVKMIAM C4 NTTNLSQIVWNRSENGNGNSN----IFDLVDDEQKRAAVQFWLLVKMIAM C5 --TNLSQIAWNRSENGNGNSN----VFDPVDDEQKRAAVQFWLLVKMIAM C6 --SNLSQIVWNRTENGNGNGN----IFDLDAEQ--RATVEFWLLVKMIAM C7 --SNLSQIAWNRTANGNGNGNGNSNIFDLDEQQ--RAAVEFWLLVKMIAM C8 --SNLSQIVWNRSKLENGNDN-NSNIFDLDAEQ--RAAVEFWLLVKMIAM C9 --TNLSQIVWNRSEN--GNGN--SNIFDLDDEE--RAAVEFWLLVKMIAM C10 --SNLSQIIWNRSENGYGSGN--TSTLDMDAEQ--RAAVEFWLLVKMIAM :***** ***: *..* :* :: **:*:********** C1 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C2 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C3 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C4 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C5 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C6 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C7 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C8 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C9 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV C10 AVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLV ************************************************** C1 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C2 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C3 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C4 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C5 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C6 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C7 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C8 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C9 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT C10 MPLGAVYEISNGWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVT ************************************************** C1 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C2 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C3 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C4 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C5 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C6 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C7 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPEYMKRIEEQHCM C8 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C9 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM C10 NIDYNNLRTPRRVFLMIFCVWFAALIVSLAPQFGWKDPDYMKRIEEQHCM **************************************:*********** C1 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C2 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C3 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C4 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C5 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C6 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C7 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C8 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C9 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL C10 VSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTL ************************************************** C1 TETDCDSAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C2 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C3 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKR C4 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGTGGQLQRRPRKR C5 TETDCDSAVRELKKERGKRRAERKRLEAGERTPVDGDGAGGQLQRRPRKR C6 TETDCDSTVRELKKERGKRRAERKRLEAGERTPVGGEAADSQLQRRPRKR C7 TETDCDSTVRELKKERGKRRAERKRLEAGERTPGGGE-ADSQLQRRPRKR C8 TETDCDSTVREMKKERGKRRAERKRLEAGERTPADGE-ADSQMQRRPRKR C9 TETDCDSTVREIKKERGKRRADRKRQEAGERTPVSGE-ADTQVQRRPLKR C10 TETDCDSTVRELKKERGKRRAERKRQEAGERTPGGGE-ADAQLQRRPRKR *******:***:****.****:*** ******* .*: :. *:***. ** C1 MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C2 MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C3 MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C4 MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C5 MRICFGRNTNTANVYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C6 MRICFGRNTNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C7 MRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C8 MRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C9 MRIYFGRNTNTANMYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA C10 IRICFGRNTNTANIYRTSNANEIITLSQQVAHATQHHLIASHLNAITPLA :** *********:************************************ C1 QSIAMGGVGCLTTTTPSEKALSGAGT------VAGAVAGGSGSGSGEEGA C2 QSIAMGGVGCLTTTSPSEKALSGAGT------VAGAVAGGSGSGSGEEGA C3 QSIAMGGVGCLTTTSPSEKALSGAGT------VGGAVAGGSGSGSGEEGA C4 QSIAMGGVACLTTTSPSEKAVSGAGAGTGTGVGAG--AGGSGSGSGEEGP C5 QSIAMGGVGCLAATSPSERAVSGAGAGAGAGAGAGTVAVGSGNGSGEEGP C6 QSIAMGGAGCLTTTSPSEKPGAAGGG-------GGSGEVG----AGTEGS C7 QSIAMGGAGCLTTTSPSEKLGAGGGGP-----GGGAGGEA----AGTEGS C8 QSIAMGGAGCLTTTSPSEKPGAGG-----------SGEEV----SGTEGT C9 QSIAMGGAGCLTTTSPPERGGGGGGAG-----IGGPGGGGETAAAGTEGS C10 QSIAMGGAGCLATTLPSANEGGGGGGG-----VAGGAGG-----AGTEGS *******..**::* *. . ... :* **. C1 GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C2 GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C3 GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C4 GTEGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C5 GTEGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C6 -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C7 -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C8 -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C9 -SPGKNAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA C10 -SPGKSAGVGLGGVLASIANPHQKLAKRRQLLEAKRERKAAQTLAIITGA : **.******************************************** C1 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C2 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C3 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C4 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C5 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C6 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C7 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C8 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN C9 FVICWLPFFVMALTMSLCKECEIHAAVASLFLWLGYFNSTLNPVIYTIFN C10 FVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFN ************************:************************* C1 PEFRRAFKRILFGRKAAARARSAKIooooooo---------- C2 PEFRRAFKRILFGRKAAARARSAKIooooooo---------- C3 PEFRRAFKRILFGRKAAARARSAKIooooooo---------- C4 PEFRRAFKRILFGRKAAARARSAKI----------------- C5 PEFRRAFKRILFGRKAAARARSAKIo---------------- C6 PEFRRAFKRILFGRKAAARARSAKIoooooooooooooo--- C7 PEFRRAFKRILFGRKAAARARSAKIoooooooooo------- C8 PEFRRAFKRILFGRKAAARARSAKIooooooooooooooooo C9 PEFRRAFKRILFGRKAAARARSAKIoooooooooo------- C10 PEFRRAFKRILFGRKAAARARSAKIooooooooooooo---- ************************* PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: gins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 569 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 569 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1B-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins S [0] default -proxy S [0] unset -email S [0]