--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 25 17:58:22 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/5-HT1A-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -7345.83         -7359.51
2      -7345.93         -7360.55
--------------------------------------
TOTAL    -7345.88         -7360.16
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.769833    0.002992    0.663885    0.872828    0.767448   1427.78   1456.23    1.000
r(A<->C){all}   0.064386    0.000149    0.042419    0.090317    0.063548   1178.49   1291.10    1.000
r(A<->G){all}   0.251768    0.000584    0.207363    0.302060    0.250574    822.76    841.18    1.000
r(A<->T){all}   0.134705    0.000495    0.091243    0.177346    0.133834    866.25    947.39    1.001
r(C<->G){all}   0.088574    0.000132    0.066195    0.110491    0.088339   1033.24   1133.02    1.001
r(C<->T){all}   0.395795    0.000905    0.338335    0.453026    0.395312    866.56    926.42    1.000
r(G<->T){all}   0.064771    0.000179    0.039975    0.091625    0.064142    845.08   1062.05    1.001
pi(A){all}      0.224552    0.000061    0.209741    0.239307    0.224545   1167.42   1189.07    1.000
pi(C){all}      0.315050    0.000074    0.298974    0.332451    0.315210    997.06   1106.22    1.000
pi(G){all}      0.297795    0.000074    0.281100    0.314691    0.297588   1146.34   1169.63    1.000
pi(T){all}      0.162603    0.000045    0.149465    0.175574    0.162682    853.80    889.08    1.000
alpha{1,2}      0.165789    0.000308    0.133087    0.200330    0.164788   1148.23   1207.71    1.000
alpha{3}        3.839659    0.987902    2.085205    5.797569    3.709505   1158.20   1299.82    1.000
pinvar{all}     0.406875    0.001116    0.339407    0.468535    0.408154   1353.17   1427.08    1.001
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-6599.587142
Model 2: PositiveSelection	-6599.587142
Model 0: one-ratio	-6709.237993
Model 3: discrete	-6597.241418
Model 7: beta	-6597.294699
Model 8: beta&w>1	-6597.288629


Model 0 vs 1	219.30170199999884

Model 2 vs 1	0.0

Model 8 vs 7	0.012140000000727014
>C1
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQPNVDGQDQDDAELEEL
DDMAVTDDGQLEDTNNNNNSKRYYSSGKRRADFIGSLALKPPPTDVNTTT
TTAGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPASS
PALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQLD
LINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAA
IILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCD
IWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVW
TAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLL
VILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLHRLRLR
LGRFSTAKSKTGSAVGVSGPASGGRALGLVDGNSTNTVNTVEDTEFSSSN
VDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSTAKSSAAVNGMAPSG
RQEDDGQRPEHGEQEDREELEDQDEQVGPQPTTATSAMTAAGTNESEDQC
KANGVEVLEDPQLQQQLEQVQQLQKSVKSGGGGGASTSNATTITSISALS
PQTPTSQGVGIAAAAAGPMTAKTSTLTSCNQSHPLCGTANESPSTPEPRS
RQPTTPQQQPHQQAHQQQQQQQQLSSIANPMQKVNKRKETLEAKRERKAA
KTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLFLWLGYFNSTL
NPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLo
>C2
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNVDGQDQDDVELDEL
EDIPVTEDGQLEDTNNNNSKRYYSSGKRRADLIGSLALKPPPTDANTTTA
TGSPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDATSSPASSPA
LQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHLDLI
NGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAII
LERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDIW
TSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWTA
AVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLLVI
LALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRLRLG
RFSTAKSKAGSAVGVSGPASGGRALGLVDGNSTNTVNTVEDTEFSSSNVD
NKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSTSAVNGAAPSGRD
EDDGVQGPERGEQEQDREEQEEREEQLGPQATTATSATTAADSNEVEEQC
KANGVEVLEDPQLQQQLEQVQQLQKSAKSGGGGGGGASTSNATTITSISA
LSPQTPTSQGIGIAGAAAGPMTAKTSTLTSCNQSHPLCGTANESPSTPEP
RSRPPATPLQQPHQQAHQQQQQQQLSSIANPMQKVNKRKETLEAKRERKA
AKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLFLWLGYFNST
LNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKL
>C3
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNADGQDQDDVELEEP
EDIPVTEDGQLEDTNNNNNSKRYYSSGKRRADFTGSLALKPPPTDANTTT
AGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPASSPA
LQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHLDLI
NGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAII
LERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDIW
TSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWTA
AVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLLVI
LALYWKIYQTARKRIHRRRPRPVDAAANNNQPDGGAATDTKLNRLRLRLG
RFSTAKSKTGSAGGVSGPPSGGRALGLVDGNSTNTVNTVEDTEFSSSNVD
NKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSSSAVNGVAPSGRE
EDDGQRPERGEQEDREEQEDQEEELGPQPTTATSATTAAGTNEVEDQCKA
NGVEVLEDPQLQQQLEQVQQLQKSAKCGGGGGGASTSNATTITSISALSP
QTPTSQGIGVAAAAAAGPMTAKTSTLTSCNQSHPLCGTANESPSTPEPRS
RQPATPLQQPHQQAHQQQQQQQLSSIANPMQKVNKRKETLEAKRERKAAK
TLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLFLWLGYFNSTLN
PVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoo
>C4
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQNTDGQDQDEEEEEQE
LEDMAVTEAEHLEDTNNNNSKRYYSSGKRRPDFVGSLALKPPPTEASTTP
AGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDTASSPALQLI
DMDNNYTNVAVGLGAMLLNDTLLLDGNDTSLFGEMMSNRSGQLDLTNGSA
GLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAIILERN
LQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDIWTSCD
VLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWTAAVIV
SLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLLVILALY
WKIYQTARKRIHRRRPRPVDAAVNNNQPESGAATDTKLNRLRLRLGRFST
AKTKTGSAGGVSGPGSQGRALGLVDGNSTNTVNTVEDTEFSSSNVDSKSR
AGVEAPSTSGNQIATVSHLVALAKQQGKSAAKSSSVVNGAAASGQGNDGQ
RTEQDEQEDQEEDQDDQEQNEPQPATATSATPAAVTEEDQCKANGVEVLE
DPQLQQQLEQVQQLQKSTKSGGGGGGASTSNATTITSISALSPQTPTSQG
IAAAAAGPMTTKTSTLTSCNQSHPLCGAANESPLTPEPRPKQQQPPLQHQ
QQQQQQQQLSSIVNPMQKVNKRKETLEAKRERKAAKTLAIITGAFVVCWL
PFFVMALTMPLCAACQISDSVASLFLWLGYFNSTLNPVIYTIFSPEFRQA
FKRILFGGHRPVHYRSGKLoooooooooooooooo
>C5
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQGLDGREQDEEEEEQQ
LEDMAVTEDVQLEDTNNNNSDRYYSSGKRRGNFISSLALKPPPTDASTTT
TTGSPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDAGSAPASSP
ALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDTSLFGEMMSNRSGQLDL
ANGSSGLNLTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAI
ILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDI
WTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWT
AAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLLV
ILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRLRL
GRFSTAKTKAGSAGTAGLSGPGSGGRALGLVDGNSTNTVNTVEDTEFSSS
NVDSKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSSAKSASAVNGAATS
GKGDDGQEPDDGEEHEENDEDREDQDPDEPQPATATSATPAAANEEEDQC
KANGVEVLEDPQLQQQLEQVQQLQKSAKTGGGGGGGASTSNATTITSISA
LSPQTPTSQGIATAAAGPMTTKTSTLTSCNQSHPLCGTASESPLTPEPRP
RQQPPPQQQQQQQQQQLSSIANPMQKVNKRKETLEAKRERKAAKTLAIIT
GAFVVCWLPFFVMALTMPLCAACQISDSVASLFLWLGYFNSTLNPVIYTI
FSPEFRQAFKRILFGGHRPVHYRSGKLoooooooo
>C6
MAHETTFNDALDYIYIANSVNDRAFLIAEPHPEQQSIDGQEQVQDEEEFE
DMAVTEDAGLEDTNNNNSKRYYSSGKRRADLVSSLALKPPPTDASTTTGS
PLATAALAAAAASASVAAAAARITAKAAHRALTTKHDPGSSPAPSPALQL
IDMDNNYTNVAVGLGAMLLNDTLLLDGNDSSLFGEMMSNRSGQLDLTNAS
AGLNMTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIAAIILER
NLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELCDIWTSC
DVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCVWTAAVI
VSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPLLVILAL
YWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRLRLGRFS
TAKTMAGSAGGVSGAGSGGRALGQVDGNSTNTVNTVEDTEFSSSNVDNKS
RAGVEAPSTSGSQIATVSHLVALAKLQGKSTAKSSSAVNGAREDGEGRER
GPEQEGQDEEQHGQDLDPDDLAAATATSATPATPAASTEDQCKANGVEVL
EDPQLQQQLEQVQQLQKSAKSGGASTSNATTITSISALSPQTPTSQGIIM
TATAGAAAGPMTAKTSTLTSCNQSHPLCGTTSSSPLTPEPRPRQQPPPQQ
QQQQHQQQSQLSSIANPMQKVNKRKETLEAKRERKAAKTLAIITGAFVVC
WLPFFVMALTMPLCAACQISDSVASLFLWLGYFNSTLNPVIYTIFSPEFR
QAFKRILFGGHRPVHYRSGKLoooooooooooooo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=6, Len=860 

C1              MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQPNVDGQDQDDAELE-E
C2              MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNVDGQDQDDVELD-E
C3              MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNADGQDQDDVELE-E
C4              MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQNTDGQDQDEEEEEQE
C5              MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQGLDGREQDEEEEEQQ
C6              MAHETTFNDALDYIYIANSVNDRAFLIAEPHPEQQSIDGQEQVQDEEE--
                *****:*************:************** . **::* : * :  

C1              LDDMAVTDDGQLEDTNNNNNSKRYYSSGKRRADFIGSLALKPPPTDVNTT
C2              LEDIPVTEDGQLEDTNNNN-SKRYYSSGKRRADLIGSLALKPPPTDANTT
C3              PEDIPVTEDGQLEDTNNNNNSKRYYSSGKRRADFTGSLALKPPPTDANTT
C4              LEDMAVTEAEHLEDTNNNN-SKRYYSSGKRRPDFVGSLALKPPPTEASTT
C5              LEDMAVTEDVQLEDTNNNN-SDRYYSSGKRRGNFISSLALKPPPTDASTT
C6              FEDMAVTEDAGLEDTNNNN-SKRYYSSGKRRADLVSSLALKPPPTDASTT
                 :*:.**:   ******** *.********* :: .*********:..**

C1              TTTAGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
C2              TATG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDATSSPAS
C3              TAG--SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
C4              P-AG-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDT----AS
C5              TTTG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDAGSAPAS
C6              T--G-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKHDPGSSPAP
                .    **********************************:*:*.    *.

C1              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQL
C2              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
C3              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
C4              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDTSLFGEMMSNRSGQL
C5              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDTSLFGEMMSNRSGQL
C6              SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDSSLFGEMMSNRSGQL
                *******************************:***:******::****:*

C1              DLINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
C2              DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
C3              DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
C4              DLTNGSAGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
C5              DLANGSSGLNLTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
C6              DLTNASAGLNMTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
                ** *.: ***:***************************************

C1              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
C2              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
C3              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
C4              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
C5              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
C6              AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
                **************************************************

C1              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
C2              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
C3              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
C4              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
C5              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
C6              DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
                **************************************************

C1              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
C2              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
C3              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
C4              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
C5              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
C6              WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
                **************************************************

C1              LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLHRLRL
C2              LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
C3              LVILALYWKIYQTARKRIHRRRPRPVDAAANNNQPDGGAATDTKLNRLRL
C4              LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPESGAATDTKLNRLRL
C5              LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
C6              LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
                *****************************.*****:.********:****

C1              RLGRFSTAKSKTGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
C2              RLGRFSTAKSKAGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
C3              RLGRFSTAKSKTGSAG--GVSGPPSGGRALGLVDGNSTNTVNTVEDTEFS
C4              RLGRFSTAKTKTGSAG--GVSGPGSQGRALGLVDGNSTNTVNTVEDTEFS
C5              RLGRFSTAKTKAGSAGTAGLSGPGSGGRALGLVDGNSTNTVNTVEDTEFS
C6              RLGRFSTAKTMAGSAG--GVSGAGSGGRALGQVDGNSTNTVNTVEDTEFS
                *********: :***   *:**. * ***** ******************

C1              SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSTAKSSAAVNGMA
C2              SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSTSAVNGAA
C3              SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSSSAVNGVA
C4              SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSAAKSSSVVNGAA
C5              SSNVDSKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSSAKSASAVNGAA
C6              SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKLQGKSTAKSSSAVNGAR
                *****.*************.************* ****:***::.***  

C1              PSGRQEDDGQR-PEHGEQE-DREELEDQDEQVGPQPTTATSAMTAAGTNE
C2              PSGRDEDDGVQGPERGEQEQDREEQEEREEQLGPQATTATSATTAADSNE
C3              PSGREEDDGQR-PERGEQE-DREEQEDQEEELGPQPTTATSATTAAGTNE
C4              ASGQG-NDGQR-TEQ-DEQEDQEEDQDDQEQNEPQPATATSATPAA-VTE
C5              TSGKG-DDGQE-PDDGEEHEENDEDREDQDPDEPQPATATSATPAA-ANE
C6              EDGEGRERGPE-----QEGQDEEQHGQDLDPDDLAAATATSATPATPAAS
                 .*.  : * .     ::  :.::  :  :     .:***** .*:   .

C1              SEDQCKANGVEVLEDPQLQQQLEQVQQLQKSVKSGGGGGA--STSNATTI
C2              VEEQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGGGGGGGASTSNATTI
C3              VEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKCGGGGGG-ASTSNATTI
C4              E-DQCKANGVEVLEDPQLQQQLEQVQQLQKSTKSGGGGGG-ASTSNATTI
C5              EEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKTGGGGGGGASTSNATTI
C6              TEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGG-----ASTSNATTI
                  :****************************.* **      ********

C1              TSISALSPQTPTSQGVGIAA-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
C2              TSISALSPQTPTSQGIGIAG-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
C3              TSISALSPQTPTSQGIGVAAAA--AAGPMTAKTSTLTSCNQSHPLCGTAN
C4              TSISALSPQTPTSQGIAAAA-----AGPMTTKTSTLTSCNQSHPLCGAAN
C5              TSISALSPQTPTSQGIATAA-----AGPMTTKTSTLTSCNQSHPLCGTAS
C6              TSISALSPQTPTSQGIIMTATAGAAAGPMTAKTSTLTSCNQSHPLCGTTS
                ***************:  :.     *****:****************::.

C1              ESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLSSIANPMQKVNKRKET
C2              ESPSTPEPRSRPPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
C3              ESPSTPEPRSRQPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
C4              ESPLTPEPRPKQ-----QQPPLQHQQQQQQQQQLSSIVNPMQKVNKRKET
C5              ESPLTPEPRPRQ-----QPPP--QQQQQQQQQQLSSIANPMQKVNKRKET
C6              SSPLTPEPRPRQ-----QPPPQQQQQQHQQQSQLSSIANPMQKVNKRKET
                .** *****.:      * *    :**:***. ****.************

C1              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
C2              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
C3              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
C4              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
C5              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
C6              LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
                **************************************************

C1              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLo-----
C2              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKL------
C3              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoo----
C4              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
C5              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
C6              LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
                ********************************************      

C1              ----------
C2              ----------
C3              ----------
C4              oooooooooo
C5              oo--------
C6              oooooooo--
                          




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
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-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
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-setenv        	S	[0] 	0
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-aln           	S	[0] 
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-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
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-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
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-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
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-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
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-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
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-pdb_blast_server	W_F	[0] 	EBI
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-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
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-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
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-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
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-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
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-prune_lib_mode	S	[0] 	5
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-rna_lib       	S	[0] 
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-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
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-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
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-overaln_threshold	D	[0] 	0 
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-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alngins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 gins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 6 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  835 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  835 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [31400]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [31400]--->[29660]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/5-HT1A-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.499 Mb, Max= 31.473 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQPNVDGQDQDDAELE-E
LDDMAVTDDGQLEDTNNNNNSKRYYSSGKRRADFIGSLALKPPPTDVNTT
TTTAGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQL
DLINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLHRLRL
RLGRFSTAKSKTGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSTAKSSAAVNGMA
PSGRQEDDGQR-PEHGEQE-DREELEDQDEQVGPQPTTATSAMTAAGTNE
SEDQCKANGVEVLEDPQLQQQLEQVQQLQKSVKSGGGGGA--STSNATTI
TSISALSPQTPTSQGVGIAA-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLo-----
----------
>C2
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNVDGQDQDDVELD-E
LEDIPVTEDGQLEDTNNNN-SKRYYSSGKRRADLIGSLALKPPPTDANTT
TATG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKSKAGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSTSAVNGAA
PSGRDEDDGVQGPERGEQEQDREEQEEREEQLGPQATTATSATTAADSNE
VEEQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGGGGGGGASTSNATTI
TSISALSPQTPTSQGIGIAG-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRPPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKL------
----------
>C3
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNADGQDQDDVELE-E
PEDIPVTEDGQLEDTNNNNNSKRYYSSGKRRADFTGSLALKPPPTDANTT
TAG--SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAANNNQPDGGAATDTKLNRLRL
RLGRFSTAKSKTGSAG--GVSGPPSGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSSSAVNGVA
PSGREEDDGQR-PERGEQE-DREEQEDQEEELGPQPTTATSATTAAGTNE
VEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKCGGGGGG-ASTSNATTI
TSISALSPQTPTSQGIGVAAAA--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRQPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoo----
----------
>C4
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQNTDGQDQDEEEEEQE
LEDMAVTEAEHLEDTNNNN-SKRYYSSGKRRPDFVGSLALKPPPTEASTT
P-AG-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDT----AS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDTSLFGEMMSNRSGQL
DLTNGSAGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPESGAATDTKLNRLRL
RLGRFSTAKTKTGSAG--GVSGPGSQGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSAAKSSSVVNGAA
ASGQG-NDGQR-TEQ-DEQEDQEEDQDDQEQNEPQPATATSATPAA-VTE
E-DQCKANGVEVLEDPQLQQQLEQVQQLQKSTKSGGGGGG-ASTSNATTI
TSISALSPQTPTSQGIAAAA-----AGPMTTKTSTLTSCNQSHPLCGAAN
ESPLTPEPRPKQ-----QQPPLQHQQQQQQQQQLSSIVNPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oooooooooo
>C5
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQGLDGREQDEEEEEQQ
LEDMAVTEDVQLEDTNNNN-SDRYYSSGKRRGNFISSLALKPPPTDASTT
TTTG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDAGSAPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDTSLFGEMMSNRSGQL
DLANGSSGLNLTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKTKAGSAGTAGLSGPGSGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSSAKSASAVNGAA
TSGKG-DDGQE-PDDGEEHEENDEDREDQDPDEPQPATATSATPAA-ANE
EEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKTGGGGGGGASTSNATTI
TSISALSPQTPTSQGIATAA-----AGPMTTKTSTLTSCNQSHPLCGTAS
ESPLTPEPRPRQ-----QPPP--QQQQQQQQQQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oo--------
>C6
MAHETTFNDALDYIYIANSVNDRAFLIAEPHPEQQSIDGQEQVQDEEE--
FEDMAVTEDAGLEDTNNNN-SKRYYSSGKRRADLVSSLALKPPPTDASTT
T--G-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKHDPGSSPAP
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDSSLFGEMMSNRSGQL
DLTNASAGLNMTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKTMAGSAG--GVSGAGSGGRALGQVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKLQGKSTAKSSSAVNGAR
EDGEGRERGPE-----QEGQDEEQHGQDLDPDDLAAATATSATPATPAAS
TEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGG-----ASTSNATTI
TSISALSPQTPTSQGIIMTATAGAAAGPMTAKTSTLTSCNQSHPLCGTTS
SSPLTPEPRPRQ-----QPPPQQQQQQHQQQSQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oooooooo--

FORMAT of file /tmp/tmp3743322964519348028aln Not Supported[FATAL:T-COFFEE]
>C1
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQPNVDGQDQDDAELE-E
LDDMAVTDDGQLEDTNNNNNSKRYYSSGKRRADFIGSLALKPPPTDVNTT
TTTAGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQL
DLINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLHRLRL
RLGRFSTAKSKTGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSTAKSSAAVNGMA
PSGRQEDDGQR-PEHGEQE-DREELEDQDEQVGPQPTTATSAMTAAGTNE
SEDQCKANGVEVLEDPQLQQQLEQVQQLQKSVKSGGGGGA--STSNATTI
TSISALSPQTPTSQGVGIAA-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRQPTTPQQQPHQQAHQQQQQQQQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLo-----
----------
>C2
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNVDGQDQDDVELD-E
LEDIPVTEDGQLEDTNNNN-SKRYYSSGKRRADLIGSLALKPPPTDANTT
TATG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKSKAGSAV--GVSGPASGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSTSAVNGAA
PSGRDEDDGVQGPERGEQEQDREEQEEREEQLGPQATTATSATTAADSNE
VEEQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGGGGGGGASTSNATTI
TSISALSPQTPTSQGIGIAG-A--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRPPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKL------
----------
>C3
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQQNADGQDQDDVELE-E
PEDIPVTEDGQLEDTNNNNNSKRYYSSGKRRADFTGSLALKPPPTDANTT
TAG--SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGHL
DLINGSVGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAANNNQPDGGAATDTKLNRLRL
RLGRFSTAKSKTGSAG--GVSGPPSGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSTAKSSSAVNGVA
PSGREEDDGQR-PERGEQE-DREEQEDQEEELGPQPTTATSATTAAGTNE
VEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKCGGGGGG-ASTSNATTI
TSISALSPQTPTSQGIGVAAAA--AAGPMTAKTSTLTSCNQSHPLCGTAN
ESPSTPEPRSRQPATPLQQPHQQAHQQQQQQQ-LSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoo----
----------
>C4
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQNTDGQDQDEEEEEQE
LEDMAVTEAEHLEDTNNNN-SKRYYSSGKRRPDFVGSLALKPPPTEASTT
P-AG-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDT----AS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDTSLFGEMMSNRSGQL
DLTNGSAGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPESGAATDTKLNRLRL
RLGRFSTAKTKTGSAG--GVSGPGSQGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGNQIATVSHLVALAKQQGKSAAKSSSVVNGAA
ASGQG-NDGQR-TEQ-DEQEDQEEDQDDQEQNEPQPATATSATPAA-VTE
E-DQCKANGVEVLEDPQLQQQLEQVQQLQKSTKSGGGGGG-ASTSNATTI
TSISALSPQTPTSQGIAAAA-----AGPMTTKTSTLTSCNQSHPLCGAAN
ESPLTPEPRPKQ-----QQPPLQHQQQQQQQQQLSSIVNPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oooooooooo
>C5
MAHETSFNDALDYIYIANSVNDRAFLIAEPHPEQQGLDGREQDEEEEEQQ
LEDMAVTEDVQLEDTNNNN-SDRYYSSGKRRGNFISSLALKPPPTDASTT
TTTG-SPLATAALAAAAASASVAAAAARITAKAAHRALTSKQDAGSAPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDTSLFGEMMSNRSGQL
DLANGSSGLNLTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKTKAGSAGTAGLSGPGSGGRALGLVDGNSTNTVNTVEDTEFS
SSNVDSKSRAGVEAPSTSGSQIATVSHLVALAKQQGKSSAKSASAVNGAA
TSGKG-DDGQE-PDDGEEHEENDEDREDQDPDEPQPATATSATPAA-ANE
EEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKTGGGGGGGASTSNATTI
TSISALSPQTPTSQGIATAA-----AGPMTTKTSTLTSCNQSHPLCGTAS
ESPLTPEPRPRQ-----QPPP--QQQQQQQQQQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oo--------
>C6
MAHETTFNDALDYIYIANSVNDRAFLIAEPHPEQQSIDGQEQVQDEEE--
FEDMAVTEDAGLEDTNNNN-SKRYYSSGKRRADLVSSLALKPPPTDASTT
T--G-SPLATAALAAAAASASVAAAAARITAKAAHRALTTKHDPGSSPAP
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLDGNDSSLFGEMMSNRSGQL
DLTNASAGLNMTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAVDRYWAVTNIDYIHSRTSNRVFMMIFCV
WTAAVIVSLAPQFGWKDPDYLQRIEQQKCMVSQDVSYQVFATCCTFYVPL
LVILALYWKIYQTARKRIHRRRPRPVDAAVNNNQPDGGAATDTKLNRLRL
RLGRFSTAKTMAGSAG--GVSGAGSGGRALGQVDGNSTNTVNTVEDTEFS
SSNVDNKSRAGVEAPSTSGSQIATVSHLVALAKLQGKSTAKSSSAVNGAR
EDGEGRERGPE-----QEGQDEEQHGQDLDPDDLAAATATSATPATPAAS
TEDQCKANGVEVLEDPQLQQQLEQVQQLQKSAKSGG-----ASTSNATTI
TSISALSPQTPTSQGIIMTATAGAAAGPMTAKTSTLTSCNQSHPLCGTTS
SSPLTPEPRPRQ-----QPPPQQQQQQHQQQSQLSSIANPMQKVNKRKET
LEAKRERKAAKTLAIITGAFVVCWLPFFVMALTMPLCAACQISDSVASLF
LWLGYFNSTLNPVIYTIFSPEFRQAFKRILFGGHRPVHYRSGKLoooooo
oooooooo--
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:860 S:94 BS:860
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# PW_SEQ_DISTANCES 
BOT	    0    1	 94.71 C1	 C2	 94.71
TOP	    1    0	 94.71 C2	 C1	 94.71
BOT	    0    2	 95.43 C1	 C3	 95.43
TOP	    2    0	 95.43 C3	 C1	 95.43
BOT	    0    3	 90.82 C1	 C4	 90.82
TOP	    3    0	 90.82 C4	 C1	 90.82
BOT	    0    4	 90.27 C1	 C5	 90.27
TOP	    4    0	 90.27 C5	 C1	 90.27
BOT	    0    5	 88.00 C1	 C6	 88.00
TOP	    5    0	 88.00 C6	 C1	 88.00
BOT	    1    2	 96.75 C2	 C3	 96.75
TOP	    2    1	 96.75 C3	 C2	 96.75
BOT	    1    3	 90.09 C2	 C4	 90.09
TOP	    3    1	 90.09 C4	 C2	 90.09
BOT	    1    4	 90.77 C2	 C5	 90.77
TOP	    4    1	 90.77 C5	 C2	 90.77
BOT	    1    5	 88.98 C2	 C6	 88.98
TOP	    5    1	 88.98 C6	 C2	 88.98
BOT	    2    3	 91.19 C3	 C4	 91.19
TOP	    3    2	 91.19 C4	 C3	 91.19
BOT	    2    4	 90.88 C3	 C5	 90.88
TOP	    4    2	 90.88 C5	 C3	 90.88
BOT	    2    5	 89.00 C3	 C6	 89.00
TOP	    5    2	 89.00 C6	 C3	 89.00
BOT	    3    4	 92.85 C4	 C5	 92.85
TOP	    4    3	 92.85 C5	 C4	 92.85
BOT	    3    5	 90.40 C4	 C6	 90.40
TOP	    5    3	 90.40 C6	 C4	 90.40
BOT	    4    5	 91.59 C5	 C6	 91.59
TOP	    5    4	 91.59 C6	 C5	 91.59
AVG	 0	 C1	  *	 91.85
AVG	 1	 C2	  *	 92.26
AVG	 2	 C3	  *	 92.65
AVG	 3	 C4	  *	 91.07
AVG	 4	 C5	  *	 91.27
AVG	 5	 C6	  *	 89.59
TOT	 TOT	  *	 91.45
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
C2              ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
C3              ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
C4              ATGGCGCACGAGACCAGCTTTAATGATGCGCTCGACTACATTTACATAGC
C5              ATGGCGCACGAGACCAGCTTTAATGATGCGCTCGACTACATTTACATAGC
C6              ATGGCGCACGAGACCACTTTTAATGATGCGCTCGACTACATTTACATAGC
                ****************  ************** *****************

C1              GAACAGCATGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAAC
C2              GAATAGCATGAATGACAGGGCCTTTCTGATTGCCGAACCGCATCCCGAAC
C3              GAATAGCATGAATGACAGGGCCTTTCTGATTGCCGAACCACATCCCGAAC
C4              GAATAGCGTGAATGACAGGGCGTTTTTGATAGCCGAACCGCATCCCGAAC
C5              GAACAGCGTAAACGACAGGGCCTTTCTGATAGCCGAACCACATCCGGAGC
C6              GAATAGCGTGAATGACAGGGCCTTTCTGATAGCCGAGCCACATCCCGAAC
                *** ***.*.** ******** *** ****:*****.**.***** **.*

C1              AGCCGAATGTAGATGGTCAGGACCAGGACGACGCGGAGCTGGAG---GAA
C2              AGCAGAATGTCGATGGTCAGGACCAGGACGACGTGGAGCTGGAT---GAG
C3              AGCAGAATGCTGATGGTCAGGACCAGGACGACGTGGAGCTGGAG---GAG
C4              AGCAGAACACTGATGGTCAGGACCAGGACGAAGAGGAGGAGGAGCAGGAG
C5              AGCAGGGCCTCGATGGCCGGGAGCAGGACGAGGAGGAGGAGGAGCAGCAG
C6              AGCAGAGCATCGATGGTCAGGAGCAGGTGCAGGACGAGGAGGAG------
                ***.*..    ***** *.*** ****:  * *  *** :***       

C1              CTGGACGACATGGCGGTCACGGACGATGGACAGCTGGAGGATACCAATAA
C2              CTGGAGGACATTCCGGTCACGGAGGATGGACAGCTGGAGGACACAAACAA
C3              CCGGAGGACATTCCGGTCACGGAGGATGGTCAGCTGGAGGACACAAACAA
C4              CTGGAGGACATGGCGGTCACGGAGGCTGAACATCTGGAGGACACGAATAA
C5              CTGGAGGACATGGCGGTCACGGAGGACGTCCAGCTGGAGGACACCAATAA
C6              TTTGAGGACATGGCGGTCACGGAGGATGCTGGGCTGGAGGATACGAATAA
                   ** *****  ********** *. *   . ******** ** ** **

C1              CAACAACAACAGCAAGCGCTACTACAGCTCCGGTAAAAGACGAGCGGATT
C2              CAACAAC---AGCAAACGCTACTACAGTTCCGGAAAGAGACGAGCGGATT
C3              CAACAACAACAGCAAGCGCTACTACAGCTCCGGGAAGAGACGAGCGGATT
C4              CAACAAT---AGCAAACGCTACTACAGCTCCGGGAAAAGACGACCCGATT
C5              CAACAAC---AGCGACCGCTACTACAGTTCGGGTAAGAGACGCGGGAATT
C6              CAACAAC---AGCAAGCGCTACTACAGCTCCGGGAAGAGACGCGCTGACC
                ******    ***.* *********** ** ** **.*****.   .*  

C1              TCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC
C2              TGATAGGCTCCCTGGCGCTGAAACCACCGCCCACCGATGCGAACACCACC
C3              TCACAGGCTCCCTGGCTCTGAAACCACCGCCCACCGATGCGAACACCACC
C4              TCGTTGGCTCCCTAGCGCTGAAACCACCGCCCACCGAAGCGAGCACCACC
C5              TCATTAGTTCCCTGGCGCTGAAACCACCGCCCACCGATGCCAGCACCACC
C6              TTGTGAGCTCGCTGGCGCTGAAACCGCCGCCCACCGATGCGAGCACCACC
                * .  .* ** **.** *****.**.***********:*  *.*******

C1              ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCTTTGGCAGCGGCAGC
C2              ACCGCCACCGGC---TCACCCCTGGCCACCGCCGCTTTGGCAGCGGCAGC
C3              ACCGCCGGC------TCACCACTGGCCACCGCCGCTTTGGCAGCGGCAGC
C4              CCC---GCCGGC---TCACCACTGGCCACCGCCGCTTTGGCAGCAGCTGC
C5              ACCACCACCGGT---TCCCCATTGGCCACCGCCGCTCTGGCAGCAGCCGC
C6              ACC------GGC---TCACCCTTGGCCACCGCCGCCTTGGCCGCAGCAGC
                .**            **.**. *************  ****.**.** **

C1              CGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGG
C2              TGCCAGTGCCTCAGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAGGCGG
C3              AGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAGGCGG
C4              AGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAAGCGG
C5              TGCAAGTGCCTCGGTGGCAGCAGCGGCTGCCAGGATAACGGCCAAGGCGG
C6              CGCCAGTGCCTCGGTAGCGGCAGCAGCTGCCAGGATCACGGCCAAGGCGG
                 **.********.**.**.*****.***********.** *****.****

C1              CACACAGGGCACTGACCACCAAGCAGGATGCCACATCCTCGCCAGCATCC
C2              CGCACAGGGCACTGACCAGCAAGCAGGATGCCACATCCTCGCCAGCATCC
C3              CGCACAGGGCACTGACCACGAAGCAGGATGCTACATCCTCGCCCGCATCC
C4              CACACAGGGCTCTGACCACCAAACAGGATACA------------GCATCC
C5              CACACCGGGCCCTGACGAGCAAACAGGACGCAGGATCTGCGCCGGCATCC
C6              CGCACAGGGCGCTGACGACCAAGCACGACCCAGGATCCTCGCCGGCGCCC
                *.***.**** ***** *  **.** **  *             **. **

C1              TCTCCAGCCCTCCAACTGATCGACATGGACAATAACTACACGAATGTCGC
C2              TCGCCGGCCCTCCAACTGATCGACATGGACAATAACTATACGAATGTCGC
C3              TCGCCAGCCCTCCAACTGATCGACATGGACAATAACTATACGAATGTCGC
C4              TCGCCGGCACTACAACTGATCGACATGGACAATAACTACACGAATGTGGC
C5              TCGCCAGCCCTTCAACTGATCGACATGGACAATAACTACACGAATGTGGC
C6              TCGCCAGCCCTCCAACTGATCGACATGGACAATAACTACACCAATGTGGC
                ** **.**.** ************************** ** ***** **

C1              AGTCGGACTGGGTGCCATGCTGCTAAATGACACGCTCCTCCTCGAAGGCA
C2              AGTCGGACTGGGTGCCATGCTGCTAAACGATACGCTTCTTCTCGAAGGCA
C3              AGTCGGACTGGGTGCCATGCTGCTAAACGACACGCTTCTCCTCGAAGGCA
C4              CGTCGGACTGGGCGCCATGCTGTTGAATGACACACTCCTCCTCGATGGCA
C5              CGTTGGCCTCGGGGCCATGCTCCTCAACGACACGCTCCTCCTCGAGGGCA
C6              CGTCGGCCTGGGCGCCATGCTGCTGAACGACACACTCCTCCTCGACGGCA
                .** **.** ** ********  * ** ** **.** ** ***** ****

C1              ACGATTCCAGTTTGTTCGGCGAGATGCTTGCCAACCGGAGTGGCCAACTG
C2              ACGATTCCAGTTTGTTTGGCGAGATGCTGGCCAACCGGAGTGGCCACCTG
C3              ACGATTCCAGTTTGTTTGGCGAGATGCTCGCCAACCGGAGTGGCCACCTG
C4              ACGATACGAGCCTGTTTGGGGAGATGATGTCGAATCGGAGTGGCCAACTG
C5              ACGATACCAGCTTGTTCGGTGAGATGATGTCGAATCGCAGTGGCCAGCTG
C6              ACGACTCGAGCTTGTTCGGGGAGATGATGTCCAACCGGAGTGGCCAGCTG
                **** :* **  **** ** ******.*  * ** ** ******** ***

C1              GATCTGATCAACGGCACTGGCGGCCTCAATGTGACCACCAGCAAAGTGGC
C2              GATCTGATCAACGGCAGTGTTGGCCTAAATGTGACCACCAGCAAAGTGGC
C3              GATCTGATCAACGGCAGTGTCGGGCTCAATGTGACCACCAGCAAAGTGGC
C4              GATCTGACCAACGGCAGTGCCGGCCTTAATGTGACCACGAGCAAAGTGGC
C5              GATCTGGCCAACGGAAGTTCGGGCCTTAATTTGACCACCAGCAAGGTGGC
C6              GATCTGACCAACGCGAGTGCGGGCCTCAATATGACCACGAGCAAAGTGGC
                ******. *****  * *   ** ** *** ******* *****.*****

C1              CGAGGACGACTTTACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
C2              CGAGGACGACTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
C3              CGAGGACGACTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
C4              TGAGGACGATTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
C5              CGAGGATGATTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
C6              TGAGGACGACTTCACTCAGCTGCTGCGAATGGCCGTCACTTCGGTGCTGC
                 ***** ** ** ** ***********************:**********

C1              TCGGTCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
C2              TTGGCCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
C3              TTGGGCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
C4              TCGGCCTAATGATACTGGTCACCATAATTGGCAATGTCTTCGTCATTGCG
C5              TCGGCCTGATGATACTGGTAACCATAATTGGCAATGTCTTTGTCATCGCG
C6              TTGGACTGATGATTCTGGTCACCATAATTGGCAATGTCTTTGTCATCGCG
                * ** **.*****:*****.******************** ***** ***

C1              GCCATTATCCTGGAGCGGAATCTACAAAACGTGGCCAACTACCTGGTGGC
C2              GCCATTATCCTGGAGCGGAATCTGCAGAACGTGGCCAACTACCTGGTGGC
C3              GCCATTATCCTGGAGCGCAATCTGCAAAACGTGGCCAACTACCTGGTCGC
C4              GCTATTATCCTGGAGCGTAATCTGCAGAACGTGGCCAACTATCTAGTGGC
C5              GCCATTATCCTTGAGCGGAATCTGCAGAACGTGGCCAACTATCTGGTGGC
C6              GCCATTATCCTGGAGCGGAATCTACAGAACGTGGCCAACTATCTGGTAGC
                ** ******** ***** *****.**.************** **.** **

C1              CTCATTGGCAGTGGCCGATCTCTTCGTGGCCTGCCTAGTAATGCCCCTAG
C2              CTCATTGGCCGTCGCCGATCTCTTCGTGGCCTGTCTAGTGATGCCCCTAG
C3              CTCATTGGCCGTGGCCGATCTCTTCGTGGCCTGTCTAGTAATGCCCCTAG
C4              CTCTTTGGCCGTCGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCTCTGG
C5              CTCGTTGGCCGTCGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCCCTGG
C6              TTCTTTGGCCGTGGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCCCTTG
                 ** *****.** ***************** ** *****.***** ** *

C1              GAGCTGTATACGAGATCAGCCAAGGCTGGATACTTGGTCCGGAATTGTGC
C2              GAGCAGTATACGAGATCAGCCAGGGCTGGATACTTGGTCCGGAATTGTGC
C3              GAGCAGTATACGAGATTAGCCAGGGTTGGATACTTGGTCCGGAGTTGTGC
C4              GAGCTGTATACGAGATCAGCCAAGGCTGGATACTTGGCCCGGAATTATGC
C5              GAGCCGTTTACGAGATCAGCCAAGGTTGGATACTTGGCCCGGAGTTATGC
C6              GAGCAGTATACGAGATTAGCCAGGGCTGGATACTCGGACCGGAATTGTGC
                **** **:******** *****.** ******** ** *****.**.***

C1              GATATCTGGACGTCGTGCGATGTCCTCTGCTGCACTGCCTCGATTTTGCA
C2              GATATCTGGACTTCGTGCGATGTCCTCTGCTGCACAGCCTCGATTTTGCA
C3              GATATCTGGACTTCGTGCGATGTCCTATGCTGCACAGCCTCGATTTTGCA
C4              GATATCTGGACATCGTGCGACGTCCTCTGCTGCACTGCCTCGATTTTGCA
C5              GATATCTGGACCTCGTGCGATGTCCTCTGCTGCACAGCCTCGATTTTGCA
C6              GATATCTGGACGTCGTGCGATGTGCTCTGCTGCACAGCCTCGATTTTGCA
                *********** ******** ** **.********:**************

C1              TCTGGTGGCCATTGCCGTCGATCGTTACTGGGCGGTCACCAATATAGATT
C2              TCTGGTGGCCATTGCCGTGGATCGTTACTGGGCGGTGACCAATATAGATT
C3              TCTGGTGGCCATTGCCGTGGATCGTTACTGGGCGGTGACCAATATCGATT
C4              TTTGGTGGCCATCGCCGTCGATCGCTATTGGGCGGTGACCAATATCGATT
C5              TTTGGTGGCTATTGCCGTGGATCGATACTGGGCGGTGACCAATATAGACT
C6              TTTGGTGGCCATTGCCGTGGATCGCTATTGGGCGGTGACCAACATTGACT
                * ******* ** ***** ***** ** ******** ***** ** ** *

C1              ACATCCACTCGCGGACCAGCAATCGTGTCTTTATGATGATCTTTTGCGTT
C2              ACATCCACTCGCGGACCAGCAATCGCGTCTTCATGATGATCTTTTGCGTT
C3              ACATCCACTCGCGGACCAGCAATCGCGTCTTTATGATGATCTTTTGCGTT
C4              ATATCCACTCCCGGACCAGCAATCGCGTCTTTATGATGATCTTTTGTGTT
C5              ATATCCACTCGCGGACCAGCAATCGCGTTTTCATGATGATTTTCTGCGTT
C6              ACATTCACTCGAGGACCAGCAATCGGGTTTTCATGATGATATTCTGCGTT
                * ** ***** .************* ** ** ******** ** ** ***

C1              TGGACGGCGGCGGTGATTGTGTCCTTGGCACCACAGTTCGGTTGGAAGGA
C2              TGGACGGCGGCGGTGATTGTCTCCTTGGCGCCACAGTTCGGCTGGAAGGA
C3              TGGACGGCGGCGGTGATTGTCTCCTTGGCGCCGCAGTTCGGTTGGAAGGA
C4              TGGACGGCGGCGGTAATAGTATCTCTGGCACCACAATTCGGTTGGAAGGA
C5              TGGACAGCGGCGGTGATTGTCTCCTTGGCGCCACAGTTTGGTTGGAAGGA
C6              TGGACGGCGGCAGTGATTGTATCTCTGGCGCCACAGTTTGGTTGGAAGGA
                *****.*****.**.**:** **  ****.**.**.** ** ********

C1              TCCAGACTATCTGCAGCGTATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
C2              TCCCGATTATCTGCAGCGCATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
C3              TCCAGACTATCTGCAGCGCATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
C4              TCCTGACTATCTGCAACGCATTGAGCAGCAAAAGTGCATGGTCTCACAGG
C5              TCCCGACTATTTGCAGCGCATCGAGCAGCAGAAGTGCATGGTTTCGCAGG
C6              TCCGGACTACCTGCAGCGCATCGAACAGCAGAAGTGCATGGTATCGCAGG
                *** ** **  ****.** ** **.*****.*********** **.****

C1              ATGTTTCTTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
C2              ATGTTTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
C3              ATGTTTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
C4              ACGTATCCTACCAGGTATTTGCCACCTGTTGCACATTCTACGTGCCGCTG
C5              ATGTGTCATATCAGGTATTTGCCACCTGTTGCACATTCTACGTGCCGCTC
C6              ATGTGTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTA
                * ** ** ** ************************** ********.** 

C1              CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
C2              CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
C3              CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
C4              CTGGTCATCCTAGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
C5              TTGGTCATCCTGGCACTCTACTGGAAAATCTATCAAACGGCCCGCAAACG
C6              CTGGTCATTCTGGCACTCTACTGGAAAATCTATCAGACGGCTCGCAAACG
                 ******* **.**. * *****************.***** ********

C1              CATCCATCGTCGACGACCGCGACCCGTCGATGCGGCGGTCAATAATAATC
C2              CATCCATCGTCGTCGACCGCGACCCGTCGATGCGGCGGTCAATAATAATC
C3              CATCCATCGTCGACGACCGCGACCCGTCGATGCGGCGGCCAATAATAATC
C4              CATCCATCGCCGACGACCACGACCTGTCGATGCTGCGGTCAATAATAATC
C5              CATCCATCGTCGACGACCGAGACCCGTCGATGCAGCGGTCAATAATAATC
C6              CATCCATCGTCGACGACCACGACCCGTCGATGCGGCGGTCAATAATAATC
                ********* **:*****..**** ******** **** ***********

C1              AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTCATCGACTGCGTCTA
C2              AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
C3              AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
C4              AGCCGGAGAGTGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
C5              AGCCGGACGGCGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
C6              AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
                ******* .* ************************.**************

C1              CGCCTCGGCAGATTCTCCACGGCCAAATCCAAAACCGGAAGTGCCGTG--
C2              CGCCTCGGCAGATTCTCCACGGCCAAATCCAAAGCCGGAAGTGCCGTT--
C3              CGCCTCGGCAGATTCTCCACGGCCAAATCCAAGACCGGAAGTGCCGGG--
C4              CGGCTGGGCAGATTCTCCACGGCCAAGACCAAGACCGGAAGTGCCGGG--
C5              CGGCTCGGCAGATTCTCCACGGCCAAGACCAAGGCCGGAAGTGCCGGGAC
C6              CGGCTAGGCAGGTTCTCCACGGCCAAGACCATGGCCGGAAGTGCCGGG--
                ** ** *****.**************.:***:..************    

C1              ----GGCGTCTCAGGACCCGCATCCGGAGGCAGGGCTCTGGGCCTCGTCG
C2              ----GGCGTCTCAGGACCCGCATCCGGGGGCAGGGCTTTGGGCCTGGTCG
C3              ----GGCGTCTCTGGACCCCCATCCGGGGGCAGGGCTCTGGGCCTGGTCG
C4              ----GGCGTCTCAGGTCCTGGATCCCAGGGCAGGGCTTTGGGTCTGGTCG
C5              GGCGGGCCTCTCAGGACCCGGATCCGGGGGCAGGGCTTTGGGCCTGGTCG
C6              ----GGCGTCTCAGGAGCCGGATCCGGGGGCAGGGCTCTGGGCCAGGTCG
                    *** ****:**: *   **** ..********* **** *: ****

C1              ATGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTCAGC
C2              ATGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTTAGC
C3              ATGGCAACTCGACGAACACGGTCAACACCGTCGAGGACACCGAGTTTAGC
C4              ATGGCAACTCAACGAACACCGTCAACACCGTTGAGGACACCGAGTTTAGC
C5              ACGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTCAGC
C6              ACGGTAACTCAACGAACACGGTCAACACCGTGGAGGACACCGAGTTCAGC
                * ** *****.******** *********** ************** ***

C1              AGCTCGAATGTGGACAGCAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
C2              AGCTCGAATGTGGACAACAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
C3              AGCTCCAATGTGGACAACAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
C4              AGCTCGAATGTGGATAGCAAAAGTCGAGCAGGAGTTGAGGCACCCAGCAC
C5              AGCTCCAATGTGGACAGCAAAAGTCGAGCTGGCGTCGAGGCGCCCAGCAC
C6              AGCTCGAATGTGGACAACAAGAGTCGGGCCGGCGTCGAGGCGCCCAGCAC
                ***** ******** *.***.*****.** **.** *****.********

C1              TTCTGGCAACCAGATAGCCACCGTATCGCACCTGGTTGCGCTGGCCAAGC
C2              ATCTGGCAGCCAGATAGCCACCGTGTCGCACCTGGTTGCGCTGGCCAAGC
C3              ATCGGGCAGCCAGATAGCCACCGTGTCGCACCTGGTTGCGCTGGCCAAGC
C4              GTCCGGCAACCAGATAGCCACCGTGTCGCACCTGGTGGCGTTGGCCAAGC
C5              GTCGGGCAGTCAGATCGCCACGGTGTCGCACCTGGTGGCTCTGGCCAAAC
C6              GTCCGGCAGCCAGATAGCCACCGTGTCGCACCTGGTGGCGCTAGCCAAGC
                 ** ****. *****.***** **.*********** **  *.*****.*

C1              AGCAGGGCAAGTCCACCGCCAAATCCTCAGCCGCTGTCAACGGAATGGCC
C2              AGCAGGGCAAGTCCACTGCCAAATCCACATCCGCCGTCAACGGGGCTGCC
C3              AGCAGGGCAAGTCCACCGCCAAATCCTCATCCGCTGTCAACGGGGTGGCC
C4              AGCAGGGCAAGTCAGCAGCCAAGTCCTCGTCCGTTGTCAACGGTGCGGCC
C5              AGCAGGGCAAGTCCAGCGCCAAGTCCGCGTCGGCTGTCAACGGAGCGGCC
C6              TGCAGGGCAAGTCCACCGCCAAGTCCTCGTCCGCTGTCAACGGAGCGCGG
                :************..  *****.*** *. * *  ******** .     

C1              CCATCGGGCAGGCAAGAGGACGATGGCCAGCGA---CCAGAACACGGGGA
C2              CCATCGGGCAGGGATGAGGATGATGGCGTCCAGGGACCAGAACGCGGGGA
C3              CCATCAGGCAGGGAGGAGGATGATGGCCAGCGA---CCAGAACGCGGGGA
C4              GCATCGGGCCAAGGC---AATGACGGGCAGCGG---ACAGAACAG---GA
C5              ACCTCGGGCAAGGGG---GACGACGGCCAGGAG---CCGGATGATGGGGA
C6              GAGGATGGGGAGGGGCGGGAGCGGGGGCCAGAA---------------CA
                 .  . **  .. .    .*  . **     ..                *

C1              GCAGGAG---GATCGCGAGGAGCTAGAGGACCAGGACGAGCAGGTTGGCC
C2              GCAGGAGCAGGATCGCGAGGAGCAGGAGGAGCGGGAAGAGCAGCTTGGCC
C3              GCAGGAG---GATCGGGAGGAGCAAGAGGACCAGGAAGAGGAACTGGGCC
C4              TGAGCAGGAGGATCAGGAGGAGGACCAGGATGACCAGGAGCAGAACGAAC
C5              GGAGCACGAGGAGAACGACGAGGACCGCGAGGACCAGGACCCCGATGAGC
C6              GGAGGGGCAGGACGAGGAGCAGCATGGGCAGGACCTGGATCCGGATGACC
                  ** .    **  . **  ** :  .  *  .  : **  .  : *. *

C1              CGCAGCCCACAACCGCAACATCAGCAATGACAGCGGCAGGCACCAACGAG
C2              CGCAGGCCACAACCGCAACATCAGCAACGACAGCGGCAGACTCCAACGAG
C3              CGCAGCCCACAACCGCAACATCAGCAACGACAGCGGCAGGCACCAACGAG
C4              CACAACCCGCAACCGCAACATCAGCAACGCCAGCGGCA---GTAACCGAG
C5              CGCAGCCCGCAACCGCAACATCAGCAACGCCAGCGGCA---GCAAACGAG
C6              TCGCAGCCGCAACCGCAACATCAGCAACGCCGGCAACGCCAGCCGCATCC
                   .. **.****************** *.*.**..*.     .... . 

C1              TCGGAGGACCAATGCAAGGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
C2              GTGGAGGAGCAGTGCAAGGCCAACGGGGTGGAGGTGCTGGAGGATCCGCA
C3              GTGGAGGACCAATGCAAGGCCAATGGGGTGGAGGTCCTGGAGGATCCGCA
C4              GAA---GACCAGTGCAAAGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
C5              GAGGAGGACCAGTGCAAGGCCAATGGGGTGGAGGTCCTGGAGGATCCGCA
C6              ACCGAGGACCAGTGCAAGGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
                      ** **.*****.***** *********** **************

C1              GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGTTAAAT
C2              GTTGCAACAGCAGCTGGAACAAGTGCAGCAGCTGCAGAAGTCGGCCAAAT
C3              GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGCAAAAT
C4              GTTGCAACAGCAGCTTGAACAAGTGCAGCAGCTGCAGAAATCAACGAAAT
C5              GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGCCAAAA
C6              GCTGCAGCAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCAGCGAAAT
                * ****.******** ***********************.**..  ***:

C1              CCGGCGGTGGAGGTGGGGCC------AGTACGTCAAATGCCACCACAATT
C2              CGGGCGGTGGAGGTGGAGGTGGTGCCAGTACGTCAAATGCCACCACAATT
C3              GCGGCGGCGGAGGCGGTGGG---GCCAGTACGTCAAATGCCACCACAATT
C4              CCGGTGGTGGTGGAGGTGGG---GCCAGTACGTCAAATGCCACCACAATT
C5              CTGGTGGAGGCGGTGGGGGCGGGGCGAGCACATCAAATGCCACCACAATT
C6              CCGGCGGG---------------GCCAGCACATCGAATGCGACCACAATT
                  ** **                   ** **.**.***** *********

C1              ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCGCAGGGAGTTGG
C2              ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCGCAGGGAATTGG
C3              ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCACAGGGGATTGG
C4              ACGTCGATATCGGCGCTATCGCCACAAACGCCAACTTCGCAGGGAATCGC
C5              ACGTCGATATCGGCACTATCGCCACAAACGCCGACTTCGCAGGGAATCGC
C6              ACGTCGATATCGGCGCTATCGCCACAAACGCCGACTTCGCAGGGAATCAT
                ***********.**.*****************.**:**.*****..* . 

C1              AATCGCCGCC---GCC------GCCGCTGGACCGATGACGGCCAAAACCA
C2              AATCGCCGGC---GCT------GCCGCTGGACCGATGACGGCCAAAACCA
C3              AGTCGCCGCCGCCGCT------GCCGCTGGACCGATGACGGCCAAAACCA
C4              TGCCGCCGCC---------------GCCGGACCGATGACAACCAAAACCA
C5              CACTGCTGCC---------------GCCGGACCGATGACGACCAAAACCA
C6              CATGACCGCCACCGCTGGGGCCGCTGCCGGGCCAATGACGGCCAAAACCA
                 .  .* * *               ** **.**.*****..*********

C1              GCACGCTGACGAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
C2              GCACGCTGACGAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
C3              GCACGCTGACAAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
C4              GCACGCTGACGAGCTGCAACCAATCGCATCCACTATGCGGTGCCGCCAAC
C5              GCACGCTGACGAGCTGTAACCAATCGCATCCGCTTTGCGGCACCGCCAGC
C6              GCACACTGACGAGCTGCAACCAGTCGCATCCGCTGTGCGGGACCACCAGT
                ****.*****.***** *****.********.** ***** .**.***. 

C1              GAATCCCCATCGACACCAGAGCCACGTAGCCGACAACCGACGACCCCGCA
C2              GAATCCCCATCGACCCCAGAGCCACGTAGCCGCCCACCGGCGACACCGCT
C3              GAATCCCCATCGACCCCAGAGCCACGCAGCCGGCAACCGGCAACTCCGCT
C4              GAATCCCCTTTGACCCCAGAGCCACGCCCCAAGCAG--------------
C5              GAGTCCCCCTTGACCCCAGAGCCACGCCCCCGACAG--------------
C6              TCGTCTCCCCTCACTCCGGAGCCACGCCCCCGGCAG--------------
                 ..** **    ** **.******** . *.. *..              

C1              GCAGCAGCCGCATCAGCAGGCGCACCAGCAGCAGCAGCAGCAGCAGCAAC
C2              GCAGCAGCCACATCAGCAGGCGCATCAGCAGCAGCAGCAGCAGCAA---C
C3              GCAGCAGCCACATCAGCAGGCGCATCAGCAGCAACAGCAGCAGCAG---C
C4              -CAGCAGCCCCCATTGCAACATCAGCAACAACAACAACAGCAGCAGCAAC
C5              -CAGCCGCCCCCG------CAGCAGCAACAGCAGCAGCAGCAGCAGCAAC
C6              -CAGCCGCCCCCGCAGCAGCAGCAGCAGCAGCATCAGCAGCAATCGCAGC
                 ****.*** *.        . ** **.**.** **.*****. ..   *

C1              TCTCCAGCATCGCCAATCCGATGCAGAAGGTGAACAAGCGAAAGGAGACC
C2              TCTCCAGCATCGCCAATCCGATGCAGAAGGTGAACAAGCGGAAGGAGACC
C3              TCTCCAGTATCGCCAATCCGATGCAGAAGGTGAACAAGCGAAAGGAGACC
C4              TCTCTAGCATCGTCAATCCTATGCAGAAGGTTAACAAGCGAAAGGAAACA
C5              TCTCGAGCATCGCGAATCCGATGCAAAAGGTGAACAAGCGGAAGGAAACG
C6              TGTCCAGCATCGCCAATCCCATGCAGAAGGTGAACAAGCGGAAGGAGACG
                * ** ** ****  ***** *****.***** ********.*****.** 

C1              CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATTAC
C2              CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATCAC
C3              CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATCAC
C4              CTGGAGGCCAAAAGGGAACGCAAGGCGGCCAAGACGCTGGCCATCATCAC
C5              CTGGAGGCCAAAAGGGAGCGAAAGGCGGCCAAGACGCTGGCCATCATCAC
C6              CTGGAGGCGAAGCGGGAGAGAAAGGCGGCCAAGACGCTGGCCATCATCAC
                ******** **..****..* ************************** **

C1              CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCACTGACCA
C2              CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
C3              CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
C4              CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
C5              CGGCGCCTTCGTCGTCTGCTGGCTCCCCTTCTTCGTCATGGCCCTAACCA
C6              CGGCGCCTTCGTGGTCTGCTGGCTGCCCTTCTTTGTCATGGCCCTGACCA
                ************ *********** ******** ********.**.****

C1              TGCCGCTCTGTGCCGCCTGCCAGATCAGCGATTCCGTTGCCTCGCTCTTC
C2              TGCCCCTCTGTGCCGCCTGCCAGATCAGCGATTCGGTGGCCTCGCTCTTC
C3              TGCCCCTCTGTGCCGCCTGCCAGATCAGCGATTCCGTGGCCTCGCTCTTC
C4              TGCCCCTCTGTGCCGCCTGCCAGATCAGTGACAGCGTGGCCTCGCTCTTC
C5              TGCCCCTCTGCGCCGCCTGCCAGATCAGCGACAGCGTGGCCTCGCTCTTC
C6              TGCCCCTTTGTGCCGCCTGCCAGATCAGCGACAGCGTGGCCTCGCTCTTC
                **** ** ** ***************** ** :  ** ************

C1              CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTTATTTACACCAT
C2              CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTTATCTACACCAT
C3              CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTCATCTACACCAT
C4              CTGTGGTTAGGATACTTCAACTCCACCCTCAATCCGGTCATCTACACCAT
C5              CTCTGGCTGGGCTACTTCAACTCCACCCTCAACCCGGTCATCTACACCAT
C6              CTCTGGCTGGGCTACTTCAACTCCACCCTCAACCCGGTCATATACACCAT
                ** *** *.**.******************** ***** ** ********

C1              CTTCAGTCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
C2              CTTCAGTCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
C3              CTTCAGCCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
C4              CTTCAGTCCGGAATTCCGTCAAGCCTTCAAGCGCATCCTCTTCGGCGGCC
C5              CTTCAGCCCGGAGTTCCGCCAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
C6              CTTCAGTCCGGAGTTCCGACAAGCCTTCAAGCGCATCCTCTTCGGCGGCC
                ****** *****.***** **.****************************

C1              ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
C2              ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
C3              ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
C4              ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
C5              ACCGACCAGTCCACTACAGAAGCGGGAAGCTC------------------
C6              ACCGACCAGTCCATTACCGCAGCGGGAAGCTC------------------
                ************* ***.*.************                  

C1              ------------------------------
C2              ------------------------------
C3              ------------------------------
C4              ------------------------------
C5              ------------------------------
C6              ------------------------------
                                              



>C1
ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
GAACAGCATGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAAC
AGCCGAATGTAGATGGTCAGGACCAGGACGACGCGGAGCTGGAG---GAA
CTGGACGACATGGCGGTCACGGACGATGGACAGCTGGAGGATACCAATAA
CAACAACAACAGCAAGCGCTACTACAGCTCCGGTAAAAGACGAGCGGATT
TCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC
ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCTTTGGCAGCGGCAGC
CGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGG
CACACAGGGCACTGACCACCAAGCAGGATGCCACATCCTCGCCAGCATCC
TCTCCAGCCCTCCAACTGATCGACATGGACAATAACTACACGAATGTCGC
AGTCGGACTGGGTGCCATGCTGCTAAATGACACGCTCCTCCTCGAAGGCA
ACGATTCCAGTTTGTTCGGCGAGATGCTTGCCAACCGGAGTGGCCAACTG
GATCTGATCAACGGCACTGGCGGCCTCAATGTGACCACCAGCAAAGTGGC
CGAGGACGACTTTACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
TCGGTCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
GCCATTATCCTGGAGCGGAATCTACAAAACGTGGCCAACTACCTGGTGGC
CTCATTGGCAGTGGCCGATCTCTTCGTGGCCTGCCTAGTAATGCCCCTAG
GAGCTGTATACGAGATCAGCCAAGGCTGGATACTTGGTCCGGAATTGTGC
GATATCTGGACGTCGTGCGATGTCCTCTGCTGCACTGCCTCGATTTTGCA
TCTGGTGGCCATTGCCGTCGATCGTTACTGGGCGGTCACCAATATAGATT
ACATCCACTCGCGGACCAGCAATCGTGTCTTTATGATGATCTTTTGCGTT
TGGACGGCGGCGGTGATTGTGTCCTTGGCACCACAGTTCGGTTGGAAGGA
TCCAGACTATCTGCAGCGTATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
ATGTTTCTTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
CATCCATCGTCGACGACCGCGACCCGTCGATGCGGCGGTCAATAATAATC
AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTCATCGACTGCGTCTA
CGCCTCGGCAGATTCTCCACGGCCAAATCCAAAACCGGAAGTGCCGTG--
----GGCGTCTCAGGACCCGCATCCGGAGGCAGGGCTCTGGGCCTCGTCG
ATGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTCAGC
AGCTCGAATGTGGACAGCAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
TTCTGGCAACCAGATAGCCACCGTATCGCACCTGGTTGCGCTGGCCAAGC
AGCAGGGCAAGTCCACCGCCAAATCCTCAGCCGCTGTCAACGGAATGGCC
CCATCGGGCAGGCAAGAGGACGATGGCCAGCGA---CCAGAACACGGGGA
GCAGGAG---GATCGCGAGGAGCTAGAGGACCAGGACGAGCAGGTTGGCC
CGCAGCCCACAACCGCAACATCAGCAATGACAGCGGCAGGCACCAACGAG
TCGGAGGACCAATGCAAGGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGTTAAAT
CCGGCGGTGGAGGTGGGGCC------AGTACGTCAAATGCCACCACAATT
ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCGCAGGGAGTTGG
AATCGCCGCC---GCC------GCCGCTGGACCGATGACGGCCAAAACCA
GCACGCTGACGAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
GAATCCCCATCGACACCAGAGCCACGTAGCCGACAACCGACGACCCCGCA
GCAGCAGCCGCATCAGCAGGCGCACCAGCAGCAGCAGCAGCAGCAGCAAC
TCTCCAGCATCGCCAATCCGATGCAGAAGGTGAACAAGCGAAAGGAGACC
CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATTAC
CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCACTGACCA
TGCCGCTCTGTGCCGCCTGCCAGATCAGCGATTCCGTTGCCTCGCTCTTC
CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTTATTTACACCAT
CTTCAGTCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
------------------------------
>C2
ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
GAATAGCATGAATGACAGGGCCTTTCTGATTGCCGAACCGCATCCCGAAC
AGCAGAATGTCGATGGTCAGGACCAGGACGACGTGGAGCTGGAT---GAG
CTGGAGGACATTCCGGTCACGGAGGATGGACAGCTGGAGGACACAAACAA
CAACAAC---AGCAAACGCTACTACAGTTCCGGAAAGAGACGAGCGGATT
TGATAGGCTCCCTGGCGCTGAAACCACCGCCCACCGATGCGAACACCACC
ACCGCCACCGGC---TCACCCCTGGCCACCGCCGCTTTGGCAGCGGCAGC
TGCCAGTGCCTCAGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAGGCGG
CGCACAGGGCACTGACCAGCAAGCAGGATGCCACATCCTCGCCAGCATCC
TCGCCGGCCCTCCAACTGATCGACATGGACAATAACTATACGAATGTCGC
AGTCGGACTGGGTGCCATGCTGCTAAACGATACGCTTCTTCTCGAAGGCA
ACGATTCCAGTTTGTTTGGCGAGATGCTGGCCAACCGGAGTGGCCACCTG
GATCTGATCAACGGCAGTGTTGGCCTAAATGTGACCACCAGCAAAGTGGC
CGAGGACGACTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
TTGGCCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
GCCATTATCCTGGAGCGGAATCTGCAGAACGTGGCCAACTACCTGGTGGC
CTCATTGGCCGTCGCCGATCTCTTCGTGGCCTGTCTAGTGATGCCCCTAG
GAGCAGTATACGAGATCAGCCAGGGCTGGATACTTGGTCCGGAATTGTGC
GATATCTGGACTTCGTGCGATGTCCTCTGCTGCACAGCCTCGATTTTGCA
TCTGGTGGCCATTGCCGTGGATCGTTACTGGGCGGTGACCAATATAGATT
ACATCCACTCGCGGACCAGCAATCGCGTCTTCATGATGATCTTTTGCGTT
TGGACGGCGGCGGTGATTGTCTCCTTGGCGCCACAGTTCGGCTGGAAGGA
TCCCGATTATCTGCAGCGCATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
ATGTTTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
CATCCATCGTCGTCGACCGCGACCCGTCGATGCGGCGGTCAATAATAATC
AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
CGCCTCGGCAGATTCTCCACGGCCAAATCCAAAGCCGGAAGTGCCGTT--
----GGCGTCTCAGGACCCGCATCCGGGGGCAGGGCTTTGGGCCTGGTCG
ATGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTTAGC
AGCTCGAATGTGGACAACAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
ATCTGGCAGCCAGATAGCCACCGTGTCGCACCTGGTTGCGCTGGCCAAGC
AGCAGGGCAAGTCCACTGCCAAATCCACATCCGCCGTCAACGGGGCTGCC
CCATCGGGCAGGGATGAGGATGATGGCGTCCAGGGACCAGAACGCGGGGA
GCAGGAGCAGGATCGCGAGGAGCAGGAGGAGCGGGAAGAGCAGCTTGGCC
CGCAGGCCACAACCGCAACATCAGCAACGACAGCGGCAGACTCCAACGAG
GTGGAGGAGCAGTGCAAGGCCAACGGGGTGGAGGTGCTGGAGGATCCGCA
GTTGCAACAGCAGCTGGAACAAGTGCAGCAGCTGCAGAAGTCGGCCAAAT
CGGGCGGTGGAGGTGGAGGTGGTGCCAGTACGTCAAATGCCACCACAATT
ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCGCAGGGAATTGG
AATCGCCGGC---GCT------GCCGCTGGACCGATGACGGCCAAAACCA
GCACGCTGACGAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
GAATCCCCATCGACCCCAGAGCCACGTAGCCGCCCACCGGCGACACCGCT
GCAGCAGCCACATCAGCAGGCGCATCAGCAGCAGCAGCAGCAGCAA---C
TCTCCAGCATCGCCAATCCGATGCAGAAGGTGAACAAGCGGAAGGAGACC
CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATCAC
CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
TGCCCCTCTGTGCCGCCTGCCAGATCAGCGATTCGGTGGCCTCGCTCTTC
CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTTATCTACACCAT
CTTCAGTCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
------------------------------
>C3
ATGGCGCACGAGACCAGCTTTAATGATGCGCTTGACTACATTTACATAGC
GAATAGCATGAATGACAGGGCCTTTCTGATTGCCGAACCACATCCCGAAC
AGCAGAATGCTGATGGTCAGGACCAGGACGACGTGGAGCTGGAG---GAG
CCGGAGGACATTCCGGTCACGGAGGATGGTCAGCTGGAGGACACAAACAA
CAACAACAACAGCAAGCGCTACTACAGCTCCGGGAAGAGACGAGCGGATT
TCACAGGCTCCCTGGCTCTGAAACCACCGCCCACCGATGCGAACACCACC
ACCGCCGGC------TCACCACTGGCCACCGCCGCTTTGGCAGCGGCAGC
AGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAGGCGG
CGCACAGGGCACTGACCACGAAGCAGGATGCTACATCCTCGCCCGCATCC
TCGCCAGCCCTCCAACTGATCGACATGGACAATAACTATACGAATGTCGC
AGTCGGACTGGGTGCCATGCTGCTAAACGACACGCTTCTCCTCGAAGGCA
ACGATTCCAGTTTGTTTGGCGAGATGCTCGCCAACCGGAGTGGCCACCTG
GATCTGATCAACGGCAGTGTCGGGCTCAATGTGACCACCAGCAAAGTGGC
CGAGGACGACTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
TTGGGCTAATGATACTGGTCACCATAATTGGCAATGTCTTTGTCATAGCG
GCCATTATCCTGGAGCGCAATCTGCAAAACGTGGCCAACTACCTGGTCGC
CTCATTGGCCGTGGCCGATCTCTTCGTGGCCTGTCTAGTAATGCCCCTAG
GAGCAGTATACGAGATTAGCCAGGGTTGGATACTTGGTCCGGAGTTGTGC
GATATCTGGACTTCGTGCGATGTCCTATGCTGCACAGCCTCGATTTTGCA
TCTGGTGGCCATTGCCGTGGATCGTTACTGGGCGGTGACCAATATCGATT
ACATCCACTCGCGGACCAGCAATCGCGTCTTTATGATGATCTTTTGCGTT
TGGACGGCGGCGGTGATTGTCTCCTTGGCGCCGCAGTTCGGTTGGAAGGA
TCCAGACTATCTGCAGCGCATCGAGCAGCAAAAGTGCATGGTCTCGCAGG
ATGTTTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTG
CTGGTCATCCTGGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
CATCCATCGTCGACGACCGCGACCCGTCGATGCGGCGGCCAATAATAATC
AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
CGCCTCGGCAGATTCTCCACGGCCAAATCCAAGACCGGAAGTGCCGGG--
----GGCGTCTCTGGACCCCCATCCGGGGGCAGGGCTCTGGGCCTGGTCG
ATGGCAACTCGACGAACACGGTCAACACCGTCGAGGACACCGAGTTTAGC
AGCTCCAATGTGGACAACAAAAGTCGGGCAGGCGTCGAGGCACCCAGCAC
ATCGGGCAGCCAGATAGCCACCGTGTCGCACCTGGTTGCGCTGGCCAAGC
AGCAGGGCAAGTCCACCGCCAAATCCTCATCCGCTGTCAACGGGGTGGCC
CCATCAGGCAGGGAGGAGGATGATGGCCAGCGA---CCAGAACGCGGGGA
GCAGGAG---GATCGGGAGGAGCAAGAGGACCAGGAAGAGGAACTGGGCC
CGCAGCCCACAACCGCAACATCAGCAACGACAGCGGCAGGCACCAACGAG
GTGGAGGACCAATGCAAGGCCAATGGGGTGGAGGTCCTGGAGGATCCGCA
GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGCAAAAT
GCGGCGGCGGAGGCGGTGGG---GCCAGTACGTCAAATGCCACCACAATT
ACGTCGATATCAGCGCTATCGCCACAAACGCCAACATCACAGGGGATTGG
AGTCGCCGCCGCCGCT------GCCGCTGGACCGATGACGGCCAAAACCA
GCACGCTGACAAGCTGCAACCAGTCGCATCCGCTATGCGGCACCGCCAAC
GAATCCCCATCGACCCCAGAGCCACGCAGCCGGCAACCGGCAACTCCGCT
GCAGCAGCCACATCAGCAGGCGCATCAGCAGCAACAGCAGCAGCAG---C
TCTCCAGTATCGCCAATCCGATGCAGAAGGTGAACAAGCGAAAGGAGACC
CTGGAGGCCAAAAGGGAACGGAAGGCGGCCAAGACGCTGGCCATCATCAC
CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
TGCCCCTCTGTGCCGCCTGCCAGATCAGCGATTCCGTGGCCTCGCTCTTC
CTTTGGCTGGGCTACTTCAACTCCACCCTCAATCCGGTCATCTACACCAT
CTTCAGCCCGGAGTTCCGACAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
------------------------------
>C4
ATGGCGCACGAGACCAGCTTTAATGATGCGCTCGACTACATTTACATAGC
GAATAGCGTGAATGACAGGGCGTTTTTGATAGCCGAACCGCATCCCGAAC
AGCAGAACACTGATGGTCAGGACCAGGACGAAGAGGAGGAGGAGCAGGAG
CTGGAGGACATGGCGGTCACGGAGGCTGAACATCTGGAGGACACGAATAA
CAACAAT---AGCAAACGCTACTACAGCTCCGGGAAAAGACGACCCGATT
TCGTTGGCTCCCTAGCGCTGAAACCACCGCCCACCGAAGCGAGCACCACC
CCC---GCCGGC---TCACCACTGGCCACCGCCGCTTTGGCAGCAGCTGC
AGCCAGTGCCTCGGTGGCGGCAGCGGCTGCCAGGATCACGGCCAAAGCGG
CACACAGGGCTCTGACCACCAAACAGGATACA------------GCATCC
TCGCCGGCACTACAACTGATCGACATGGACAATAACTACACGAATGTGGC
CGTCGGACTGGGCGCCATGCTGTTGAATGACACACTCCTCCTCGATGGCA
ACGATACGAGCCTGTTTGGGGAGATGATGTCGAATCGGAGTGGCCAACTG
GATCTGACCAACGGCAGTGCCGGCCTTAATGTGACCACGAGCAAAGTGGC
TGAGGACGATTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
TCGGCCTAATGATACTGGTCACCATAATTGGCAATGTCTTCGTCATTGCG
GCTATTATCCTGGAGCGTAATCTGCAGAACGTGGCCAACTATCTAGTGGC
CTCTTTGGCCGTCGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCTCTGG
GAGCTGTATACGAGATCAGCCAAGGCTGGATACTTGGCCCGGAATTATGC
GATATCTGGACATCGTGCGACGTCCTCTGCTGCACTGCCTCGATTTTGCA
TTTGGTGGCCATCGCCGTCGATCGCTATTGGGCGGTGACCAATATCGATT
ATATCCACTCCCGGACCAGCAATCGCGTCTTTATGATGATCTTTTGTGTT
TGGACGGCGGCGGTAATAGTATCTCTGGCACCACAATTCGGTTGGAAGGA
TCCTGACTATCTGCAACGCATTGAGCAGCAAAAGTGCATGGTCTCACAGG
ACGTATCCTACCAGGTATTTGCCACCTGTTGCACATTCTACGTGCCGCTG
CTGGTCATCCTAGCGTTGTACTGGAAAATCTATCAAACGGCCCGCAAACG
CATCCATCGCCGACGACCACGACCTGTCGATGCTGCGGTCAATAATAATC
AGCCGGAGAGTGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
CGGCTGGGCAGATTCTCCACGGCCAAGACCAAGACCGGAAGTGCCGGG--
----GGCGTCTCAGGTCCTGGATCCCAGGGCAGGGCTTTGGGTCTGGTCG
ATGGCAACTCAACGAACACCGTCAACACCGTTGAGGACACCGAGTTTAGC
AGCTCGAATGTGGATAGCAAAAGTCGAGCAGGAGTTGAGGCACCCAGCAC
GTCCGGCAACCAGATAGCCACCGTGTCGCACCTGGTGGCGTTGGCCAAGC
AGCAGGGCAAGTCAGCAGCCAAGTCCTCGTCCGTTGTCAACGGTGCGGCC
GCATCGGGCCAAGGC---AATGACGGGCAGCGG---ACAGAACAG---GA
TGAGCAGGAGGATCAGGAGGAGGACCAGGATGACCAGGAGCAGAACGAAC
CACAACCCGCAACCGCAACATCAGCAACGCCAGCGGCA---GTAACCGAG
GAA---GACCAGTGCAAAGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
GTTGCAACAGCAGCTTGAACAAGTGCAGCAGCTGCAGAAATCAACGAAAT
CCGGTGGTGGTGGAGGTGGG---GCCAGTACGTCAAATGCCACCACAATT
ACGTCGATATCGGCGCTATCGCCACAAACGCCAACTTCGCAGGGAATCGC
TGCCGCCGCC---------------GCCGGACCGATGACAACCAAAACCA
GCACGCTGACGAGCTGCAACCAATCGCATCCACTATGCGGTGCCGCCAAC
GAATCCCCTTTGACCCCAGAGCCACGCCCCAAGCAG--------------
-CAGCAGCCCCCATTGCAACATCAGCAACAACAACAACAGCAGCAGCAAC
TCTCTAGCATCGTCAATCCTATGCAGAAGGTTAACAAGCGAAAGGAAACA
CTGGAGGCCAAAAGGGAACGCAAGGCGGCCAAGACGCTGGCCATCATCAC
CGGCGCCTTCGTCGTCTGCTGGCTGCCCTTCTTCGTCATGGCCCTGACCA
TGCCCCTCTGTGCCGCCTGCCAGATCAGTGACAGCGTGGCCTCGCTCTTC
CTGTGGTTAGGATACTTCAACTCCACCCTCAATCCGGTCATCTACACCAT
CTTCAGTCCGGAATTCCGTCAAGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCACTACCGCAGCGGGAAGCTC------------------
------------------------------
>C5
ATGGCGCACGAGACCAGCTTTAATGATGCGCTCGACTACATTTACATAGC
GAACAGCGTAAACGACAGGGCCTTTCTGATAGCCGAACCACATCCGGAGC
AGCAGGGCCTCGATGGCCGGGAGCAGGACGAGGAGGAGGAGGAGCAGCAG
CTGGAGGACATGGCGGTCACGGAGGACGTCCAGCTGGAGGACACCAATAA
CAACAAC---AGCGACCGCTACTACAGTTCGGGTAAGAGACGCGGGAATT
TCATTAGTTCCCTGGCGCTGAAACCACCGCCCACCGATGCCAGCACCACC
ACCACCACCGGT---TCCCCATTGGCCACCGCCGCTCTGGCAGCAGCCGC
TGCAAGTGCCTCGGTGGCAGCAGCGGCTGCCAGGATAACGGCCAAGGCGG
CACACCGGGCCCTGACGAGCAAACAGGACGCAGGATCTGCGCCGGCATCC
TCGCCAGCCCTTCAACTGATCGACATGGACAATAACTACACGAATGTGGC
CGTTGGCCTCGGGGCCATGCTCCTCAACGACACGCTCCTCCTCGAGGGCA
ACGATACCAGCTTGTTCGGTGAGATGATGTCGAATCGCAGTGGCCAGCTG
GATCTGGCCAACGGAAGTTCGGGCCTTAATTTGACCACCAGCAAGGTGGC
CGAGGATGATTTCACGCAGCTGCTGCGAATGGCCGTCACATCGGTGCTGC
TCGGCCTGATGATACTGGTAACCATAATTGGCAATGTCTTTGTCATCGCG
GCCATTATCCTTGAGCGGAATCTGCAGAACGTGGCCAACTATCTGGTGGC
CTCGTTGGCCGTCGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCCCTGG
GAGCCGTTTACGAGATCAGCCAAGGTTGGATACTTGGCCCGGAGTTATGC
GATATCTGGACCTCGTGCGATGTCCTCTGCTGCACAGCCTCGATTTTGCA
TTTGGTGGCTATTGCCGTGGATCGATACTGGGCGGTGACCAATATAGACT
ATATCCACTCGCGGACCAGCAATCGCGTTTTCATGATGATTTTCTGCGTT
TGGACAGCGGCGGTGATTGTCTCCTTGGCGCCACAGTTTGGTTGGAAGGA
TCCCGACTATTTGCAGCGCATCGAGCAGCAGAAGTGCATGGTTTCGCAGG
ATGTGTCATATCAGGTATTTGCCACCTGTTGCACATTCTACGTGCCGCTC
TTGGTCATCCTGGCACTCTACTGGAAAATCTATCAAACGGCCCGCAAACG
CATCCATCGTCGACGACCGAGACCCGTCGATGCAGCGGTCAATAATAATC
AGCCGGACGGCGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
CGGCTCGGCAGATTCTCCACGGCCAAGACCAAGGCCGGAAGTGCCGGGAC
GGCGGGCCTCTCAGGACCCGGATCCGGGGGCAGGGCTTTGGGCCTGGTCG
ACGGCAACTCAACGAACACGGTCAACACCGTCGAGGACACCGAGTTCAGC
AGCTCCAATGTGGACAGCAAAAGTCGAGCTGGCGTCGAGGCGCCCAGCAC
GTCGGGCAGTCAGATCGCCACGGTGTCGCACCTGGTGGCTCTGGCCAAAC
AGCAGGGCAAGTCCAGCGCCAAGTCCGCGTCGGCTGTCAACGGAGCGGCC
ACCTCGGGCAAGGGG---GACGACGGCCAGGAG---CCGGATGATGGGGA
GGAGCACGAGGAGAACGACGAGGACCGCGAGGACCAGGACCCCGATGAGC
CGCAGCCCGCAACCGCAACATCAGCAACGCCAGCGGCA---GCAAACGAG
GAGGAGGACCAGTGCAAGGCCAATGGGGTGGAGGTCCTGGAGGATCCGCA
GTTGCAACAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCGGCCAAAA
CTGGTGGAGGCGGTGGGGGCGGGGCGAGCACATCAAATGCCACCACAATT
ACGTCGATATCGGCACTATCGCCACAAACGCCGACTTCGCAGGGAATCGC
CACTGCTGCC---------------GCCGGACCGATGACGACCAAAACCA
GCACGCTGACGAGCTGTAACCAATCGCATCCGCTTTGCGGCACCGCCAGC
GAGTCCCCCTTGACCCCAGAGCCACGCCCCCGACAG--------------
-CAGCCGCCCCCG------CAGCAGCAACAGCAGCAGCAGCAGCAGCAAC
TCTCGAGCATCGCGAATCCGATGCAAAAGGTGAACAAGCGGAAGGAAACG
CTGGAGGCCAAAAGGGAGCGAAAGGCGGCCAAGACGCTGGCCATCATCAC
CGGCGCCTTCGTCGTCTGCTGGCTCCCCTTCTTCGTCATGGCCCTAACCA
TGCCCCTCTGCGCCGCCTGCCAGATCAGCGACAGCGTGGCCTCGCTCTTC
CTCTGGCTGGGCTACTTCAACTCCACCCTCAACCCGGTCATCTACACCAT
CTTCAGCCCGGAGTTCCGCCAGGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCACTACAGAAGCGGGAAGCTC------------------
------------------------------
>C6
ATGGCGCACGAGACCACTTTTAATGATGCGCTCGACTACATTTACATAGC
GAATAGCGTGAATGACAGGGCCTTTCTGATAGCCGAGCCACATCCCGAAC
AGCAGAGCATCGATGGTCAGGAGCAGGTGCAGGACGAGGAGGAG------
TTTGAGGACATGGCGGTCACGGAGGATGCTGGGCTGGAGGATACGAATAA
CAACAAC---AGCAAGCGCTACTACAGCTCCGGGAAGAGACGCGCTGACC
TTGTGAGCTCGCTGGCGCTGAAACCGCCGCCCACCGATGCGAGCACCACC
ACC------GGC---TCACCCTTGGCCACCGCCGCCTTGGCCGCAGCAGC
CGCCAGTGCCTCGGTAGCGGCAGCAGCTGCCAGGATCACGGCCAAGGCGG
CGCACAGGGCGCTGACGACCAAGCACGACCCAGGATCCTCGCCGGCGCCC
TCGCCAGCCCTCCAACTGATCGACATGGACAATAACTACACCAATGTGGC
CGTCGGCCTGGGCGCCATGCTGCTGAACGACACACTCCTCCTCGACGGCA
ACGACTCGAGCTTGTTCGGGGAGATGATGTCCAACCGGAGTGGCCAGCTG
GATCTGACCAACGCGAGTGCGGGCCTCAATATGACCACGAGCAAAGTGGC
TGAGGACGACTTCACTCAGCTGCTGCGAATGGCCGTCACTTCGGTGCTGC
TTGGACTGATGATTCTGGTCACCATAATTGGCAATGTCTTTGTCATCGCG
GCCATTATCCTGGAGCGGAATCTACAGAACGTGGCCAACTATCTGGTAGC
TTCTTTGGCCGTGGCCGATCTCTTCGTGGCTTGTCTAGTGATGCCCCTTG
GAGCAGTATACGAGATTAGCCAGGGCTGGATACTCGGACCGGAATTGTGC
GATATCTGGACGTCGTGCGATGTGCTCTGCTGCACAGCCTCGATTTTGCA
TTTGGTGGCCATTGCCGTGGATCGCTATTGGGCGGTGACCAACATTGACT
ACATTCACTCGAGGACCAGCAATCGGGTTTTCATGATGATATTCTGCGTT
TGGACGGCGGCAGTGATTGTATCTCTGGCGCCACAGTTTGGTTGGAAGGA
TCCGGACTACCTGCAGCGCATCGAACAGCAGAAGTGCATGGTATCGCAGG
ATGTGTCCTATCAGGTATTTGCCACCTGTTGCACATTTTACGTGCCACTA
CTGGTCATTCTGGCACTCTACTGGAAAATCTATCAGACGGCTCGCAAACG
CATCCATCGTCGACGACCACGACCCGTCGATGCGGCGGTCAATAATAATC
AGCCGGACGGAGGTGCGGCAACAGATACGAAACTTAATCGACTGCGTCTA
CGGCTAGGCAGGTTCTCCACGGCCAAGACCATGGCCGGAAGTGCCGGG--
----GGCGTCTCAGGAGCCGGATCCGGGGGCAGGGCTCTGGGCCAGGTCG
ACGGTAACTCAACGAACACGGTCAACACCGTGGAGGACACCGAGTTCAGC
AGCTCGAATGTGGACAACAAGAGTCGGGCCGGCGTCGAGGCGCCCAGCAC
GTCCGGCAGCCAGATAGCCACCGTGTCGCACCTGGTGGCGCTAGCCAAGC
TGCAGGGCAAGTCCACCGCCAAGTCCTCGTCCGCTGTCAACGGAGCGCGG
GAGGATGGGGAGGGGCGGGAGCGGGGGCCAGAA---------------CA
GGAGGGGCAGGACGAGGAGCAGCATGGGCAGGACCTGGATCCGGATGACC
TCGCAGCCGCAACCGCAACATCAGCAACGCCGGCAACGCCAGCCGCATCC
ACCGAGGACCAGTGCAAGGCCAACGGGGTGGAGGTCCTGGAGGATCCGCA
GCTGCAGCAGCAGCTCGAACAAGTGCAGCAGCTGCAGAAATCAGCGAAAT
CCGGCGGG---------------GCCAGCACATCGAATGCGACCACAATT
ACGTCGATATCGGCGCTATCGCCACAAACGCCGACTTCGCAGGGAATCAT
CATGACCGCCACCGCTGGGGCCGCTGCCGGGCCAATGACGGCCAAAACCA
GCACACTGACGAGCTGCAACCAGTCGCATCCGCTGTGCGGGACCACCAGT
TCGTCTCCCCTCACTCCGGAGCCACGCCCCCGGCAG--------------
-CAGCCGCCCCCGCAGCAGCAGCAGCAGCAGCATCAGCAGCAATCGCAGC
TGTCCAGCATCGCCAATCCCATGCAGAAGGTGAACAAGCGGAAGGAGACG
CTGGAGGCGAAGCGGGAGAGAAAGGCGGCCAAGACGCTGGCCATCATCAC
CGGCGCCTTCGTGGTCTGCTGGCTGCCCTTCTTTGTCATGGCCCTGACCA
TGCCCCTTTGTGCCGCCTGCCAGATCAGCGACAGCGTGGCCTCGCTCTTC
CTCTGGCTGGGCTACTTCAACTCCACCCTCAACCCGGTCATATACACCAT
CTTCAGTCCGGAGTTCCGACAAGCCTTCAAGCGCATCCTCTTCGGCGGCC
ACCGACCAGTCCATTACCGCAGCGGGAAGCTC------------------
------------------------------
>C1
MAHETSFNDALDYIYIANSMNDRAFLIAEPHPEQPNVDGQDQDDAELEoE
LDDMAVTDDGQLEDTNNNNNSKRYYSSGKRRADFIGSLALKPPPTDVNTT
TTTAGSPLATAALAAAAASASVAAAAARITAKAAHRALTTKQDATSSPAS
SPALQLIDMDNNYTNVAVGLGAMLLNDTLLLEGNDSSLFGEMLANRSGQL
DLINGTGGLNVTTSKVAEDDFTQLLRMAVTSVLLGLMILVTIIGNVFVIA
AIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISQGWILGPELC
DIWTSCDVLCCTASILHLVAIAV