--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 25 17:07:19 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/2mit-PD/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -8663.19         -8674.61
2      -8663.09         -8673.22
--------------------------------------
TOTAL    -8663.14         -8674.13
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.444184    0.000926    0.387169    0.503074    0.442610   1103.79   1253.32    1.000
r(A<->C){all}   0.071891    0.000114    0.051489    0.092122    0.071508   1195.75   1233.35    1.000
r(A<->G){all}   0.232592    0.000411    0.196026    0.275672    0.232162    774.38    807.73    1.000
r(A<->T){all}   0.100269    0.000218    0.072600    0.129156    0.099682   1255.57   1312.75    1.001
r(C<->G){all}   0.063888    0.000111    0.043729    0.084755    0.063368   1056.29   1114.94    1.000
r(C<->T){all}   0.458501    0.000715    0.404940    0.507943    0.458767    967.32   1106.76    1.001
r(G<->T){all}   0.072860    0.000183    0.047442    0.099632    0.072295    956.79   1033.74    1.000
pi(A){all}      0.291557    0.000053    0.277518    0.305812    0.291638   1166.55   1171.95    1.000
pi(C){all}      0.276841    0.000052    0.261886    0.289597    0.276740    996.76   1104.02    1.000
pi(G){all}      0.238748    0.000047    0.225209    0.251915    0.238610   1111.39   1138.52    1.000
pi(T){all}      0.192854    0.000038    0.181837    0.205375    0.192686   1099.82   1154.78    1.000
alpha{1,2}      0.094555    0.001861    0.002847    0.159969    0.100923    798.89    903.57    1.001
alpha{3}        2.890363    0.825780    1.419002    4.742718    2.747890   1209.37   1250.82    1.000
pinvar{all}     0.216060    0.005125    0.084346    0.351990    0.216533    694.19    788.68    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-8080.18077
Model 2: PositiveSelection	-8080.18077
Model 0: one-ratio	-8093.256365
Model 3: discrete	-8076.033585
Model 7: beta	-8076.711505
Model 8: beta&w>1	-8076.711686


Model 0 vs 1	26.151190000000497

Model 2 vs 1	0.0

Model 8 vs 7	3.619999988586642E-4
>C1
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS
RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ
EAQATATSVEVAAATAATSEKTGIQATSAAQSTAAATTAEREAIATATSS
DTTATPTLAAAAAIQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQMPGMP
AKTTETPAKNLPSLAQTKATTALPILATRDAATATTEINSDKPTNISGAT
KTVATSAAEIATPPAIEVPQTILAGKKSDKMPADKAHETLLKYPTRDTSG
QVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVA
DADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKGHKKKPSL
SIKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQL
KAYVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLA
HVYRCELPWQRSNRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPA
RLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSS
SSGSSRSSLHSPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCR
TDRVAATDLGGTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWooooooooo
ooooooo
>C2
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ
EAQPTATSVEVAAAAAATSEKTDIHATPAAAPSAQSTAAATTAEREAIAT
ATSSDTTATPTLAAAAAMQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQM
PGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATATTEINSDKPTNI
SGATKTVATSAAEIATPPAIEVPQTILAGKKSDKMPADKAHETLLKYPTR
DTSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGT
ATVADADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKSHKK
KPSLSIKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAAPEELST
FAQLKAYVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVACVLFIVLL
AGLAHVYRCELPWQRSNRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNG
GDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKSSS
TSSSSSGSSRSSLHSPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNA
YGCRTDRVAATDLGGTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWooooo
ooooooo
>C3
MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG
NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL
AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ
FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK
ETQAPATSVEVAEATAAISEKTDTQATSAAAADTAEQSTAAATTAEKEAI
PTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLAQ
LQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADTATTEIN
SDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGKKSDKMPADKAQET
LLKYPTRDTSGQVATPPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAE
QLLLPGTATVADADADSEVLDSSQQHQSAEQEKHQPATDKRQADAINGDT
KSPKSHKKKPSLSIKKMTYTTKHVAKAAEDMAATAKTSQHQHSSVNTPKE
STPEELSTFAQLKAFVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVA
CVLFIVLLAGLAHVYRCELPWQRSSRSGQSRPHHQRHLNETDDAHSFLHY
QGSVNSNGGDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSS
SLADKSSSTSSSSSGSSRSSLHSPSRDDSYYIEMAPSSPPAAHLPSLPME
LLGSRSNVLGCRVDRVAATDLGGTTEAVPSSAATIKSVSSRLMTPSSRRL
NIWoooo
>C4
MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG
NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL
AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ
FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK
EAQATATSVEVAAATAATSEKTDIQGTSAAQSTAAATTAEKETIPTATSS
DTTATPTLAAATMQSAGNSLAQLTTKTLRPTETTSLAQLQRRQQMPGMPA
KTTETPAKNLPSLAQTKATTALPILATRDAGTATTEINSDNPTSISGATK
TAAASAAEIATTPAIEVPQTILAGKKSDKMPADKAQETLLKYPTRDTSGQ
IATPPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVAD
ADSEVLDSSQQHQSAEQEKHQSATDKRQADAINGDTKAPAKSHKKKPSLS
IKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLK
AYVELKSESKPEHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAH
VYRCELPWQRSSRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPAR
LQKWHHCTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS
PGSSRSSLHSNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRA
DRVAATDLGGTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooooooooo
ooooooo
>C5
MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS
LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG
NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL
AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV
GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ
FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK
GADTTAAAAAVATSEKHTAHTTDDTQATSASTQPTTGATSAEKAAIPTAT
PTSPTAMQSAGNSVAQLTTKTLRPTETTSLEQLQQRQQMPGMPAKTTATP
AKNLPSLAQTKATTAVPILAAPAAATTPAAAATTTTTTAATAINSNKPTN
ISGATKTATEMVAAPPAIEVPQTILAGKKSDKMPTDKAHETLLKYPTRDT
SGQAAASAAAAATLSHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQL
LLPGTATVADADSEVLDSSQQQHQSAEQEKHQSAADKRQAEAINGDSKSS
SSSPPKSHKKKPSLSIKKMTYSTKHAVKAVEELQATSKTPQHQHSSVNTP
KEASPEELSTFAQLKAYVELKSESKPEHLMDQREENLHNLTGNHPGVMLL
VACVLFIVLLAGLAHVYRCELPWQRSNRPGQMRPHHQRHLNDTDDAHSFL
HYQGSVNSNGGDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFY
SSSLADKSSSTASSSSLSGSSRSSLHSPSRDDSYYIEMAPSNPPSATLPS
LPMELLGSRSNGLGSRTDRVAATDLGGTTAAVPSSATAIKSVSSRLMAPS
SRRLGIW
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=5, Len=1198 

C1              MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS
C2              MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS
C3              MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS
C4              MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS
C5              MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS
                ******:*********:.****** **::*** ****** ****** ***

C1              RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN
C2              RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
C3              RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
C4              RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN
C5              LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
                 *: * *** ************ *:*************************

C1              LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
C2              LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
C3              LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG
C4              LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG
C5              LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG
                ******:.***:******* ****.*********.:**::**********

C1              NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
C2              NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
C3              NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL
C4              NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL
C5              NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL
                ***********.*.* ***:********:* *: *.**.**** **:***

C1              AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
C2              AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
C3              AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH
C4              AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH
C5              AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH
                *:*:*:****************:****:*:**************:*****

C1              NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
C2              NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
C3              NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
C4              NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
C5              NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
                **************************:***********************

C1              LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
C2              LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
C3              LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
C4              LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
C5              LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
                ***************:*:********************************

C1              DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
C2              DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
C3              DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
C4              DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV
C5              DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV
                ****************:*******.********************.*:**

C1              GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL
C2              GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
C3              GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
C4              GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
C5              GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL
                *********** *******.*:*********:******************

C1              RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ
C2              RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ
C3              RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ
C4              RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ
C5              RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ
                ****************.************.***.* * ** *********

C1              FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ
C2              FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ
C3              FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK
C4              FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK
C5              FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK
                ****  ***** *  ***** *  ****:  *:*: ***. :****:**:

C1              EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA
C2              EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA
C3              ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA
C4              EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET
C5              GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA
                 ::..*::. ** :    :..*.  :.*         *.*:.**:**: :

C1              IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA
C2              IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA
C3              IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA
C4              IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA
C5              IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE
                *.***.:..**              :*****  **************** 

C1              QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
C2              QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
C3              QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT-----
C4              QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT-----
C5              QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA
                ***:************ ************ ****:****:  * *     

C1              -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
C2              -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
C3              -------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK
C4              -------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK
C5              ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK
                       *:* ***::**.*******.:     :.:.*************

C1              KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
C2              KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
C3              KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR
C4              KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR
C5              KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR
                ******:***:************** *:..       *************

C1              HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
C2              HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
C3              HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA
C4              HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA
C5              HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA
                **********************************:  ****.*** ****

C1              EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA
C2              EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA
C3              EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV
C4              EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA
C5              EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA
                ******.*:*****:*****:    .:* *.**************:***.

C1              AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
C2              AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
C3              AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP
C4              AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP
C5              VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP
                .*:.*:: **:**.************: ************:*********

C1              EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
C2              EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
C3              EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
C4              EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS
C5              EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
                ******** . **************:************************

C1              NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
C2              NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
C3              SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
C4              SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE
C5              NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
                .*.** *********:*****************************.****

C1              APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
C2              APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
C3              APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
C4              APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH
C5              APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH
                ******************************:****:***  .********

C1              SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG
C2              SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG
C3              SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG
C4              SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG
C5              SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG
                * *************.*.:* **************  *.*.*********

C1              GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo-
C2              GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo-----
C3              GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo-------------
C4              GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo
C5              GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW-----------------
                *** ******::*********:******.**                 




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 ns       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 5 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [26054]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [26054]--->[24770]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.492 Mb, Max= 31.431 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS
RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ
EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA
IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
-------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo-
>C2
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ
EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA
IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
-------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo-----
>C3
MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG
NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL
AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ
FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK
ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA
IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT-----
-------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA
EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV
AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo-------------
>C4
MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG
NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL
AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ
FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK
EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET
IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT-----
-------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP
EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH
SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo
>C5
MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS
LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG
NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL
AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV
GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ
FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK
GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA
IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE
QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA
ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK
KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA
EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA
VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP
EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH
SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG
GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW-----------------

FORMAT of file /tmp/tmp1506833237826868836aln Not Supported[FATAL:T-COFFEE]
>C1
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS
RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ
EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA
IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
-------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo-
>C2
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ
EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA
IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT-----
-------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo-----
>C3
MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG
NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL
AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ
FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK
ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA
IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT-----
-------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA
EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV
AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH
SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo-------------
>C4
MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG
NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL
AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ
FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK
EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET
IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT-----
-------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA
EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP
EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH
SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo
>C5
MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS
LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG
NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL
AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV
GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ
FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK
GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA
IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE
QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA
ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK
KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA
EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA
VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP
EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH
SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG
GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW-----------------
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:1198 S:97 BS:1198
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# PW_SEQ_DISTANCES 
BOT	    0    1	 98.35 C1	 C2	 98.35
TOP	    1    0	 98.35 C2	 C1	 98.35
BOT	    0    2	 93.62 C1	 C3	 93.62
TOP	    2    0	 93.62 C3	 C1	 93.62
BOT	    0    3	 94.45 C1	 C4	 94.45
TOP	    3    0	 94.45 C4	 C1	 94.45
BOT	    0    4	 88.82 C1	 C5	 88.82
TOP	    4    0	 88.82 C5	 C1	 88.82
BOT	    1    2	 93.73 C2	 C3	 93.73
TOP	    2    1	 93.73 C3	 C2	 93.73
BOT	    1    3	 94.62 C2	 C4	 94.62
TOP	    3    1	 94.62 C4	 C2	 94.62
BOT	    1    4	 88.85 C2	 C5	 88.85
TOP	    4    1	 88.85 C5	 C2	 88.85
BOT	    2    3	 93.53 C3	 C4	 93.53
TOP	    3    2	 93.53 C4	 C3	 93.53
BOT	    2    4	 87.25 C3	 C5	 87.25
TOP	    4    2	 87.25 C5	 C3	 87.25
BOT	    3    4	 86.80 C4	 C5	 86.80
TOP	    4    3	 86.80 C5	 C4	 86.80
AVG	 0	 C1	  *	 93.81
AVG	 1	 C2	  *	 93.89
AVG	 2	 C3	  *	 92.03
AVG	 3	 C4	  *	 92.35
AVG	 4	 C5	  *	 87.93
TOT	 TOT	  *	 92.00
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTTCTCCT
C2              ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCCT
C3              ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT
C4              ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT
C5              ATGGTGAAAATTGTGAACCGACACTGTGATCTAGGCCTGGCCCTACTCCT
                *********** *******.************************ *** *

C1              GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA
C2              GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGTCA
C3              GGTCTGGACGTGGCTAACAAGGCTGGTGGTGGCGACCCATCTGGTCGACA
C4              TGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA
C5              GGCCTGGACATGGCTAACAAGGCAGGTGGTTTCGGCCCATCTGGTCGATA
                 * ******.*************:******  **.************: *

C1              TCCCCACCTCATCACGCCTGGCCGCTGAACGGGAGGAGCAGCAGTTGTCC
C2              TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGTTGTCC
C3              TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGCTATCC
C4              TCCCCACCTCATCACGCCTGGCCGCCGAGCGGGAGGAGCTGCAGTTATCC
C5              TTCCCACCTCATCTCGCCAGGCTGCCGAACGGGAGGAGCAGCAGTTATCC
                * ***********:****:*** ** **.**********:**** *.***

C1              CGGCAGGACGTAGGACGGCTCAGCTACCAGAGTATCCATCGTATGCTGAG
C2              CGGCAGGACGTGGGACGGCTCAGCTACCAAAGTATCCATCGCATGTTGAG
C3              CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG
C4              CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG
C5              CTGCAGAATGGCGGTGGTCTCAGCTACCCGAGCATTCATCGAATGCTGAG
                * ****.* *  **: * **********..** ** ***** *** ****

C1              GGACGAAAACGAACCGGATAGCTTTCGGGGGGAATTGCGATACCAACAGA
C2              GGACGAAAACGAACCTGCCAGCTTTCGGGGGGAATTGCGATACCAACAGA
C3              GGACGAAAACGAACCGGCCAGCTTTAGGGGGGAATTGCGATACCAACAGA
C4              GGACGAAAACGAACCGGCCAGCATTCGGGGGGAATTGCGATACCAACAGA
C5              GGACGAAAACGAACCGGCCAGCTTTCGAGGGGAATTACGATACCAACAGA
                *************** *. ***:**.*.********.*************

C1              AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT
C2              AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT
C3              AACGCCACAAAAGGGAGCTGGAGCTCAATGCTCCGGCAAACAAGCTGAAT
C4              AACGCCACAAAAGGGAGCTGGAGCTGAATGCTCCGGCAAACAAACTTAAT
C5              AACGTCACAAAAGAGAGTTGGAGCTGAATGCTCCAGCCAACAAGCTTAAT
                **** ********.*** ******* ***** **.**.*****.** ***

C1              CTCACCCACCGCGATTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA
C2              CTCACCCACCGCGACTTAAGGACATTCAATAGCACTGGCGGTCAGTGGAA
C3              CTCACCCACCGCGACTTAAAAACATTCAATAGCACTGGTGGTCAGTGGAA
C4              CTCACCCACCGCGACTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA
C5              CTCACCCACCGCGACTTGAGGAACTTTAATAGCAGTGGTGGTCAGTGGAA
                ************** **.*..*..** ******* *** ***********

C1              GGGCGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG
C2              GGGGGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG
C3              GGGCGACTTTCAGGTCATCACCGCCATGGATCTGAGCAGCAATCAACTGG
C4              GGGCGACTGTCAGGTGATCACAGCCATGGATCTGAGCAGCAATCAACTGG
C5              GGGTGACTTTCAGGTGATCACTGGTATGGATCTGAGTAGTAATCAACTGG
                *** **** ***.** ***** *  *********** ** **********

C1              AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGA
C2              AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGT
C3              AGAACGTCAGCTTGGACAACTTCAATCAACTAAGGCAGCTGGACTTGGGC
C4              AGAGCATCAGCTTGGACAAATTCAATCAACTAAGGCAGCTGGACTTGGGC
C5              AAAGTCTCAGTTTGAACAACTTCAATCAGCTGAGGCAACTGGATTTGGGT
                *.*.  **** ***.****.********.**.*****.***** ***** 

C1              AATAACTCCCTGGAGGTAATACCCTTGAGTTTGGCAGACACCAATATGTC
C2              AACAACTCCCTGGAGGTTATACCCTTAAGTTTGGCAGACACCAATATGTC
C3              AATAACTCCCTGGAGGTTATACCCCTGAGTTTGGTCGACAACAATAAGTC
C4              AATAACTCCCTGGAGGTTATACCCCTGAGCTTGGCCGACAACAATAAGTC
C5              AACAACTCTTTGGAGGTTATACCTCTGAGCTTAGCTGATACCAACAAATC
                ** *****  *******:*****  *.** **.*  ** *.*** *:.**

C1              ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT
C2              ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT
C3              ACTACCCCTTGTAACGCTCGATCTATCCTGCAACGAATTCAGACAAATTT
C4              ACTACCCTTTGTAACGCTCGATCTATCCTGTAATAAATTCTGCCAAATGT
C5              ACTTCCGTTCGTAACACTCGATCTTTCCTGCAACAAATTCAGCCAACTTT
                ***:**  * **.**.********:***** ** .*****:*.***.* *

C1              CTACGAGCTTTTTTGCCCAGCGATTGCCTCAGTTGAAAAATCTGAATCTG
C2              CTACGAGCTTTTTTGCCCAGAGATTGCCTCAGTTGAAAAATCTGAACCTG
C3              CTACGAACTTTTTTGCCCAGCGATTGCCTCAGTTGAAACATCTGAACTTG
C4              CTACGAGCTTTTTTGCCCAGCGATTGCCTCTGTTGAAACATCTTAACTTG
C5              ACACCAACTTCTTTGTCCAGCGATTGCCTGAACTTAAGAACCTCAACTTG
                . ** *.*** **** ****.******** :. * **..* ** **  **

C1              GCTCACAATGAATTGCTAAATATTTCCCGGGAATCATTCTATAATTTATT
C2              GCTCACAATGAATTGCTAAACATTTCCCGGGAATCATTCTACAATTTGTT
C3              GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT
C4              GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT
C5              GCTTACAATCAATTGTTAAACATTTCAAGGGAATCATTCTACAATTTGTT
                *** ***** *.*** **** ***** .*******.***** *****.**

C1              GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT
C2              GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT
C3              GGAACTACAAACGTTAATTCTCAGTCACAACAACATCTCGGATATAGACT
C4              GGAACTACAAACGTTAGTTCTCAGTCACAACAAAATCTCGGATATAGACT
C5              GGAACTACAAACATTAATACTCAGTCACAACAACATCACGGATATAGACT
                ************.***.*:**************.***:*******:****

C1              ATGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
C2              ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
C3              ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
C4              ATGAAACATTTTTGGCGCTACCGAATCTGCAATATCTGGATTTATCCCAT
C5              ACGAAACCTTTTTGGCTCTGCCGAATCTGCAACATCTGGACTTATCCCAC
                * *****.******** **.************ ******* ******** 

C1              AACCGCTTGAGTGGATCCGCTATTCGTGCTCTGCAAGGAATTCCGGATTT
C2              AACCGCTTGAGTGGATCCGCAATTCGTGCTCTGCAGGGAATTCCGGATTT
C3              AACCGCTTGAGCGGATCCGCTATCAGAGCTCTGCAGGGAATTCCGGATTT
C4              AACCGCTTGAGTGGTTCCGCCATCCGAGCTCTGCAGGGAATTCCGGATTT
C5              AACCGCTTGAGTGGCTCTGCAATACGAGCTTTGCAGGGAATTCCGGATTT
                *********** ** ** ** ** .*:*** ****.**************

C1              GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG
C2              GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG
C3              GGTCAGCCTTTCAATCGCTTACAATCCAGAAGTGGGAGTGGCGATGCAGG
C4              GGTCAGCCTTTCTATCGCTTACAATCCTGATGTGGGAGTTGCGATGCAGG
C5              GGTCAGCCTTTCCATTGCCTACAATCCGGAAGTGGGAGTGGCCATGCAGG
                ************ ** ** ******** **:******** ** *******

C1              AGTTCGTTGCTTCCTGGAGCCTAAAGGAGTTGGATGCCAGTGGCACTGGA
C2              AGTTCGTCGCTTCCTGGAGCCTCAAAGAGTTGGATGCCAGTGGCACTGGA
C3              AGTTCGTCGCATCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGCACTGGA
C4              AGTTCGTCGCGTCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGTACTGGA
C5              AGTTCGTCGCCTCCTGGAGTCTCAAGGAGTTGGATGCTAGTGGCACTGGA
                ******* ** ******** **.**.*********** ***** ******

C1              TTGTGTCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT
C2              TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCTGTGAGGACTCTCAAGTT
C3              TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT
C4              TTGTGCCAGGTGCCTGCAGCTTTAGCCCAATCCGTGAGGACTCTCAGGTT
C5              TTGTGCCAGGTGCCAGCAGCTTTAGCCCAATCTGTGAGGACTCTTAAGTT
                ***** ********:****** ********** *********** *.***

C1              GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC
C2              GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC
C3              GTCCGACAATTGGCTCAAGGCAATTAATTGCGGCGACATGGACAGCTACC
C4              GGCCGACAACTGGCTTAAGGCAATTAATTGCGGTGACATGGACAGTTATC
C5              ATCCGACAACTGGTTAAAGGCCATCAACTGCGGCGACATGGACAGCTATC
                . ******* *** * *****.** ** ***** *********** ** *

C1              CGCTGCTGCAGTATCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG
C2              CGCTCCTGCAGTACCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG
C3              CACTGCTGCAGTACCTTGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG
C4              CACTGCTGCAGTACCTCGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG
C5              CCCTGCTGCAGTACCTTGATCTCTCTCACTCCCGGATTGCCCAAGTGGAA
                * ** ******** ** ******** ** ***** **************.

C1              GACGATGCCTTGGGACGATTGGAGCTCCTCGAATCCCTTTTCCTAGACCG
C2              GACGATGCTCTGGGACGATTGGAGCTCCTCGAATCACTTTTCCTCGACCA
C3              GACGATGCCCTGGGACGACTGGAGCTCCTCGAGTCCCTTTTCCTCGACCA
C4              GACGATGCTCTGGGACGACTGGAGCTCCTCGAATCCCTTTTCCTGGACCA
C5              GACGATGCCCTGGGACGTTTGGAGCTCCTTGAATCTCTTTTCTTGGACCA
                ********  *******: ********** **.** ****** * ****.

C1              TAATCTACTGATGCGAGTGCCAAGTAGTCTGCCGCCATCGCTGGAACACT
C2              CAATCTTCTGATGCGAGTGCCCAGCAGTCTGCCACCATCGCTGGAACACT
C3              CAATCTTCTAATGCGAGTGCCCAGCAGCCTGCCGCCATCGCTGGAACACC
C4              CAATCTTCTGATGCGAGTGCCCAGTAGCCTGCCGCCATCGCTGGAACACT
C5              CAATCTTCTAATGCGAGTGCCAAACAGTCTACCACCATCACTGGAACACC
                 *****:**.***********.*. ** **.**.*****.********* 

C1              TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCACAGGCTTTTGTG
C2              TATTTCTGCAGCACAATCAGATAATGGAACTTCCGCCACAGGCTTTTGTG
C3              TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCTCAGGCTTTTGTG
C4              TATTTCTGCAGCACAATCAGATAATGGAGCTCCCGGCGCAGGCTTTTGTG
C5              TATTCCTACAGCACAACCAGATAATGGAACTGCCACCTCAGACTTTCGTT
                **** **.******** ***********.** **. * ***.**** ** 

C1              GGATTGGTCAATCTACAGACTCTGGACTTATCCAACAATCGATTGATCTT
C2              GGATTGGTCAATCTACAGACTCTGGACTTATCTAACAATCGATTGATCTT
C3              GGATTGGTCAATCTGCAGACTCTGGACTTATCCAGCAATCGATTGATCTT
C4              GGATTGGTCAATCTGCAGACTCTGGACTTATCCAACAACCGATTGATTTT
C5              GGCCTGGTCAACCTGCAGACCCTGGACTTGTCCCACAATCGTTTGATCTT
                **. ******* **.***** ********.** ..*** **:***** **

C1              CCTGCCCCCGCTATCGCTCCCCAAATTGCTCACCCTGAATCTGGAATCGT
C2              CCTGCCCCCGCTATCACTGCCCAAATTGCTCACCCTGAATCTGCAATCGT
C3              CCTGCCCCCGCTTTCGCTGCCCAAATTGCTCACCCTGAATCTGCAATCGT
C4              CCTGCCCCCACTTTCGCTGCCCAAATTGCTAACCCTGAATCTGCAATCGT
C5              TCTGCCCGCTCTTGCACTGCCCAAATTGCTTACCCTAAATCTGCAATCTT
                 ****** * **: *.** *********** *****.****** **** *

C1              CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
C2              CAGGGGTGGAGAGTGTTAGTCAATCGATAGTGCACACACTGCCACAGTTA
C3              CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
C4              CAGGAGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
C5              CAGGTGTAGAGAGTGTCAGCCAATCGATAGTGCACACATTGCCCCAGTTG
                **** **.***** ** ** ****************** ****.*****.

C1              AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG
C2              AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGAG
C3              AGGGATCTTTTACTAGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG
C4              AGGGATCTTTTGCTAGAGGACAACCCTATCAAGTGCAGCGATTTGCTGGG
C5              AGGGATCTCTTACTGGAGGACAATCCCATAAAATGCAGCGATTTGCTGGG
                ********  *.**.******** ** ** **.***************.*

C1              CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGCGGGTCAATCGA
C2              CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA
C3              CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA
C4              CATTGCCGAATGGGCCAGTCCATGCAGGTCAGTGGATGTGGGTCAATCGA
C5              CATTGCCGAGTGGGCCAGCCCTTGCAGGTCAGTGGATGTGGGTCAGTCGA
                *********.******** **:**************** ******.****

C1              ATGGGGCAAGTGTAAGTGGGCGCGTGGATTTGAAGACGGAGTATCTGCAA
C2              ATGGGGCAAGTGTGAGTGGGCGCGTGGATCTAAAAACGGAGTATCTGCAG
C3              GTGGGGCAAGTGTGAGTGGGCGGGTGGACTTGAAGACGGAGTATCTGCAG
C4              ATGGGCCAAGCGTGAGTGGGCGGGTGGATTTGAAGACGGAGTATCTGCAG
C5              ATGGGAGAAGTCCAAGTGGGTGGGTGGACCTCAAGACGGAGTATCTGCAA
                .****  ***   .****** * *****  * **.**************.

C1              TTCCACAATTTTTACGAAAACTTCAGCAGCCGAGAGTGTGGTATAAGAAA
C2              TTCCACAATTTCTACGAAAACTTCAGCAGCCGTGAGTGTGGTATAAGAAA
C3              TTCCACAATTTTTACGTAAACTTCAGTAGCCGAGGGTGTGTCATAAGAAA
C4              TTCCACAATTTTAACGAAAACTTCAGTAGCCGAGAGTGTGGTATAAGAAA
C5              TTTCACAATTTTTACGACAACTTCAGTAGCCGAGAGTGTGGAGCCAGGAA
                ** ******** :***:.******** *****:*.*****  . .**.**

C1              ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTAACAAGGGCATCAG
C2              ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTGACAAGGGCAGCAG
C3              ACCGGAAAATGACACAAAGCTGCCTTCTTGCAGCCTGACAAGGGCAGCAG
C4              ACCGGAAAATTACACAATGCCGCCTTCTTGCAGCGTGATAAGGGCAGCAG
C5              ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTCACAAGTGCCACAG
                ********** ******:** ************* * * *** **. ***

C1              CTACATTAACAACAACACCCAGAAGTATGTCAAAAGTTGAAAAGTCACAA
C2              CAACATTAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCACAA
C3              CAGCATCAACAACAACACCCGGAAGTATGTCAAAAGTTAAAAAGTCAAAA
C4              CAACATCAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCAAAA
C5              CAGCATTAACAACAACGTCGAGAACTATGTCAAAAGTTAAAAAGTCAAAA
                *:.*** *********. * .*** *************.********.**

C1              GAAGCACAAGCAACAGCAACATCAGTGGAAGTAGCAGCGGCAACAGCAGC
C2              GAAGCACAACCAACAGCAACATCAGTGGAAGTAGCAGCGGCCGCAGCAGC
C3              GAAACACAAGCACCAGCAACATCAGTGGAAGTAGCGGAGGCAACAGCAGC
C4              GAAGCACAGGCAACAGCAACATCAGTGGAAGTAGCGGCGGCAACAGCAGC
C5              GGAGCAGACACGACAGCAGCAGCAGCAGCAGTGGCAACATCAGAAAAACA
                *.*.** *  *..*****.** *** .*.***.**.... *...*..* .

C1              AACATCAGAAAAAACAGGC---ATACAAGCAACA----------------
C2              AACATCAGAAAAAACAGAC---ATACACGCAACACCAGCAGCAGCA----
C3              AATATCAGAAAAAACAGAC---ACCCAAGCAACATCAGCTGCAGCAGCAG
C4              AACATCAGAAAAAACAGAC---ATACAAGGAACATCAGCTGCA-------
C5              CACAGCACATACAACAGACGACACACAGGCAACGTCAGCATCA-------
                .* * ** *:*.*****.*   * .** * ***.                

C1              --TCAGCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCA
C2              --CCATCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCG
C3              ATACAGCAGAGCAGTCGACTGCAGCAGCAACAACAGCGGAAAAAGAAGCA
C4              -----------CAGTCCACTGCAGCAGCCACAACAGCGGAAAAAGAAACA
C5              --------ACTCAGCCAACTACAGGAGCAACATCAGCGGAAAAAGCAGCA
                           *** * ***.*.* .**.***:****.****.**.*.*.

C1              ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC
C2              ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC
C3              ATCCCAACAGCAACATCAAGCGACACCACAGCAACACCAGCACTCGCAGC
C4              ATCCCAACAGCAACATCGAGCGACACCACAGCAACACCAACACTCGCAGC
C5              ATTCCAACAGCAACACCAACTTCACCAACAGCA-----------------
                **  *********** *.*   ...*.******                 

C1              AGCAGCAGCA---------------ATACAATCAGCTGGCAACATCCCTG
C2              AGCAGCAGCA---------------ATGCAATCAGCTGGCAACATCCCTG
C3              AGCAGCAGCAGCAGCAGCAGCAGCAATGCAATCAGCTGGCAACAGCCTTG
C4              AGCAACA------------------ATGCAATCAGCTGGCAACAGCCTCG
C5              -------------------------ATGCAATCAGCTGGCAACAGCGTTG
                                         **.**************** *   *

C1              CCCAGTTAACCACAAAAACGTTGCGGCCCACAGAAACAACTTCGTTAGCG
C2              CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
C3              CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
C4              CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
C5              CCCAGTTAACCACAAAAACTTTGCGGCCAACAGAAACAACTTCGTTAGAG
                ******************* ********.*******************.*

C1              CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
C2              CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
C3              CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
C4              CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
C5              CAACTGCAGCAGCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGC
                **********. *************************************.

C1              AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
C2              AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
C3              AACGCCAGCAAAGAACCTGCCAAGTTTAGCCCAGACAATGGCAACAACAG
C4              AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
C5              CACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
                .**************************.**********:***********

C1              CGCTTCCCATTTTGGCAACACGAGATGCTGCCACA---------------
C2              CGCTTCCCATTTTGGCAACACGAGATGCTGCTACA---------------
C3              CGCTTCCCATTTTGGCAACACGAGATGCCGACACG---------------
C4              CGCTTCCCATTTTGGCAACACGAGATGCCGGCACA---------------
C5              CGGTTCCCATTTTGGCAGCCCCAGCAGCAGCAACAACACCAGCAGCTGCA
                ** **************.*.* **.:** *  **.               

C1              ---------------------GCAACAACGGAAATAAATTCCGACAAGCC
C2              ---------------------GCAACAACGGAAATAAATTCCGACAAGCC
C3              ---------------------GCAACAACAGAAATAAATTCCGACAAGCC
C4              ---------------------GCAACAACAGAAATAAATTCCGACAACCC
C5              GCAACAACAACAACAACAACAGCAGCAACAGCAATAAATTCCAACAAGCC
                                     ***.****.*.**********.**** **

C1              AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA
C2              AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA
C3              AACGAACATTAGCGGTGCCACAAAAACAGCAGCAACATCAGCTGCTGAAA
C4              AACGAGCATTAGCGGTGCCACAAAAACAGCAGCAGCATCAGCCGCTGAAA
C5              AACGAACATTAGCGGTGCCACAAAAACAGCAACA---------GAAATGG
                *****.*********************** *.**         *.:.:..

C1              TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
C2              TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
C3              TACCAACAACACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
C4              TAGCAACAACACCAGCAATTGAAGTGCCGCAAACCATTTTGGCCGGCAAA
C5              TGGCAGCACCACCAGCAATTGAAGTGCCACAAACAATTTTGGCCGGAAAA
                *. **.**.*******************.*****.***********.***

C1              AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA
C2              AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA
C3              AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA
C4              AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA
C5              AAATCTGACAAAATGCCAACCGATAAGGCACACGAGACTTTATTAAAATA
                ******************.************* *****************

C1              CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA----------
C2              CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA----------
C3              CCCAACAAGGGACACATCCGGTCAAGTTGCAACACCGCCA----------
C4              CCCAACAAGGGACACGTCTGGTCAAATTGCAACACCACCA----------
C5              CCCAACAAGGGACACATCCGGTCAAGCAGCAGCATCAGCAGCAGCAGCCG
                ***************.** ******. :***.** *. **          

C1              -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
C2              -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
C3              -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
C4              -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
C5              CAACACTGTCACACAAACATGCAACATTGCAGCTGCACGTTAAGGATCGA
                           *************** ***********************

C1              CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTATTGGT
C2              CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT
C3              CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTCCTGGT
C4              CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT
C5              CATCTAATTGGCACACCGCTTCTGATGCACAAGGGCGATGTCCTTTTGGT
                ******************** ***********************  ****

C1              GGATGCCGAGCAGTTGTTGCTGCCTGGTACGGCCACCGTGGCGGATGCGG
C2              GGATGCCGAACAGCTGCTGCTGCCTGGTACGGCCACCGTGGCAGATGCGG
C3              GGACGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG
C4              GGATGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG
C5              GGATGCCGAGCAGTTGTTGCTGCCTGGAACGGCAACCGTGGCGGATGCGG
                *** *****.*** ** **** *****:*****.********.*******

C1              ATTCG------GAAGTTCTGGACCCGAGCCAACAA---CATCAGTCAGCG
C2              ATTCG------GAAGTCCTGGACCCGAGCCAACAA---CATCAGTCAGCG
C3              ATGCGGATTCGGAAGTTCTGGACTCGAGCCAACAA---CATCAGTCAGCG
C4              ATTCG------GAAGTTCTGGACTCCAGCCAACAA---CATCAGTCAGCG
C5              ATTCG------GAAGTCTTGGACTCGAGCCAACAACAACATCAGTCGGCG
                ** **      *****  ***** * *********   ********.***

C1              GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGGCAAGCGGATGCAAT
C2              GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT
C3              GAGCAGGAAAAGCACCAGCCAGCGACTGATAAGCGACAAGCGGATGCAAT
C4              GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT
C5              GAGCAGGAAAAGCACCAGTCAGCGGCTGATAAGCGACAAGCGGAAGCCAT
                ****************** *****.**********.********:**.**

C1              AAACGGCGACACG------------AAGTCGCCGGCGAAAGGCCACAAAA
C2              AAACGGCGACACA------------AAGTCGCCGGCGAAAAGCCACAAAA
C3              AAACGGCGACACA------------AAGTCGCCG---AAAAGCCACAAGA
C4              AAACGGCGACACA------------AAGGCGCCGGCGAAAAGCCACAAAA
C5              AAATGGCGACTCAAAGTCGTCGTCGTCGTCGCCACCAAAAAGTCACAAAA
                *** ******:*.            :.* ****.   ***.* *****.*

C1              AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG
C2              AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG
C3              AGAAACCATCGCTGAGCATTAAGAAGATGACCTACACTACCAAACATGTG
C4              AGAAACCATCGCTGAGCATCAAAAAGATGACCTACAGTACCAAGCATGCG
C5              AGAAGCCATCGCTGAGTATCAAGAAGATGACCTACAGTACCAAACATGCA
                ****.*********** ** **.************* ******.** * .

C1              GCAAAAACCGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA
C2              GCGAAAACAGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA
C3              GCAAAAGCCGCGGAGGACATGGCAGCCACCGCGAAGACATCGCAACATCA
C4              GCAAAAACCGTGGAGGACATGGCAGCTACCTCGAAGACACCGCAGCACCA
C5              GTAAAAGCCGTTGAGGAACTACAAGCCACCTCCAAAACACCCCAGCACCA
                * .***.*.*  ***** .*. .*** *** * **.*** * **.** **

C1              ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGTTGAGCA
C2              ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGCTGAGCA
C3              ACATAGCAGTGTGAACACACCCAAGGAGTCTACTCCCGAGGAGCTGAGCA
C4              ACATAGCAGTGTGAACACACCCAAGGAGGCTATTCCCGAGGAGCTGAGCA
C5              ACACAGCAGTGTCAACACACCCAAAGAGGCTTCGCCGGAGGAACTCAGTA
                *** ******** ***********.*** **   ** *****. * ** *

C1              CCTTTGCGCAGCTTAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG
C2              CCTTTGCGCAGCTCAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG
C3              CCTTTGCCCAGCTAAAAGCCTTCGTAGAGCTAAAGAGCGAATCGAAACCG
C4              CCTTTGCCCAGCTAAAAGCATATGTAGAGCTAAAGAGCGAATCGAAACCG
C5              CTTTCGCCCAGCTAAAGGCCTATGTGGAACTAAAAAGCGAATCGAAACCA
                * ** ** ***** **.**.*: **.**.*****.**************.

C1              GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA
C2              GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA
C3              GAACACCTAATGGACCAGCGAGAGGAAAACCATCACAATCTCACAGGAAA
C4              GAACACCTAATGGATCAGCGGGAGGGAACCCATCACAATCTTACAGGAAA
C5              GAACATTTAATGGACCAGCGAGAGGAAAACCTTCACAATCTTACAGGAAA
                *****  ******* *****.****.**.**:*** ***** ********

C1              TCATCCAGGAGTCATGCTCCTGGTGGCCTGCGTTTTGTTCATCGTCCTGC
C2              TCATCCCGGAGTCATGCTCCTTGTGGCCTGCGTTTTGTTCATCGTCCTGC
C3              TCATCCCGGGGTTATGCTTCTGGTAGCCTGCGTTTTGTTCATCGTGCTGC
C4              TCATCCCGGTGTTATGCTCCTGGTGTCCTGCGTTTTGTTTATCGTGCTGC
C5              TCATCCTGGAGTAATGTTGCTGGTAGCCTGCGTATTATTCATCGTATTGC
                ****** ** ** *** * ** **. *******:**.** *****  ***

C1              TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC
C2              TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC
C3              TAGCCGGTCTGGCCCACGTCTATCGCTGTGAATTGCCCTGGCAGAGGAGC
C4              TTGCCGGTCTGGCCCACGTCTACCGCTGTGAATTGCCTTGGCAGAGGAGC
C5              TAGCAGGATTGGCTCATGTCTATCGCTGTGAATTGCCCTGGCAGAGAAGC
                * **.**: **** ** ***** ************** *****.**.***

C1              AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGACACCTAAACGAAAC
C2              AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGGCATCTAAACGAAAC
C3              AGCCGCTCCGGACAATCGCGACCGCATCATCAAAGGCATCTGAACGAAAC
C4              AGCCGTTCTGGACAATCACGACCGCATCATCAAAGGCATCTAAACGAAAC
C5              AATCGACCTGGACAGATGCGCCCGCATCATCAAAGGCATCTAAACGACAC
                *. **  * **:**.: .**.**************.** **.*****.**

C1              CGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
C2              CGATGATGCGCATAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
C3              GGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
C4              GGATGACGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAATTCCAATG
C5              CGATGATGCCCATAGTTTTCTGCACTATCAGGGCTCTGTGAATTCCAATG
                 ***** ** ** ** ** **************.******** *******

C1              GCGGTGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA
C2              GCGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA
C3              GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGCGAGAA
C4              GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACTGCACCCGGAGAGAA
C5              GAGGAGATCCCGCCCGTTTACAAAAGTGGCATCATAGCACTCGGAGAGAA
                * **:***** ** **  *.*********** ** :**** ***.*****

C1              GCACCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGGGAACTGCAACA
C2              GCACCCTACAGCTCCCCGCTCCACAATCTGCAAGCGCGGGAACTGCAACA
C3              GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA
C4              GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA
C5              GCTCCTTATAGTTCTCCACTTCACAATCTGCAAGCTCGCGAGTTGCAACA
                **:** ** ** ** **.** ********.***** ** **. *******

C1              GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTGGCGGACAAGAGCTCCT
C2              GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTAGCGGACAAGAGCTCCT
C3              GCAGCGCTGCCAGCAATTCTACAGCTCCTCGCTGGCGGACAAGAGCTCCT
C4              GCAACGCTGCCAGCAATTCTACAGCTCCTCTCTGGCGGACAGAAGCTCCT
C5              GCAACGTTGCCAGCAATTCTATAGCTCATCTCTGGCGGACAAGAGCTCCT
                ***.** ************** *****.** **.*******..*******

C1              CCACCTCGTCTTCCTCG------TCGGGAAGCAGTCGCAGTAGCCTGCAC
C2              CCACCTCGTCATCCTCA------TCGGGAAGCAGTCGCAGTAGCCTGCAC
C3              CCACCTCGTCATCCTCG------TCGGGAAGCAGTCGCAGCAGCCTGCAC
C4              CCACCTCGTCTTCCTCG------CCGGGAAGCAGTCGCAGTAGCCTGCAC
C5              CCACTGCCTCCTCGTCTTCCTTATCGGGAAGCAGCCGCAGTAGCCTGCAT
                ****  * ** ** **        ********** ***** ******** 

C1              TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCGCCCAGTAGTCC
C2              TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCCCCCAGTAGTCC
C3              TCGCCCAGCAGAGACGACAGCTACTACATAGAGATGGCGCCCAGTAGTCC
C4              TCGAACAGCAGGGATGACAGCTACTATATAGAGATGGCACCCAGTAGTCC
C5              TCTCCCAGTAGAGATGATAGCTACTACATAGAGATGGCTCCCAGTAATCC
                ** ..*** **.** ** ******** *********** *******.***

C1              ACCAGCAGCCAACCTGCCCAGTTTGCCCATGGAACTTTTGGGCAGCCGGA
C2              AGCAGCAGCCAACCTGCCAAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
C3              ACCAGCAGCCCACCTGCCCAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
C4              ACCAGCAGCCAACCTGCCTAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
C5              ACCATCCGCCACCCTGCCTAGTTTACCCATGGAACTGTTGGGCAGCAGGA
                * ** *.***..****** *****.*********** *********.***

C1              GTAATGCCCTCGGATGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC
C2              GTAATGCCTACGGTTGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC
C3              GCAATGTCCTCGGTTGCCGGGTGGACCGAGTGGCTGCCACCGATCTGGGC
C4              GCAACGCCCTTGGCTGCCGGGCGGACCGAGTGGCAGCCACCGATCTGGGC
C5              GTAATGGCCTAGGAAGCCGAACAGATCGAGTGGCTGCCACCGATCTGGGC
                * ** * * : ** :****.. .** ********:***************

C1              GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG
C2              GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG
C3              GGTACGACAGAGGCGGTACCTTCCTCGGCGGCGACCATCAAGTCGGTCAG
C4              GGTACGACAGAGGCGGTACCTTCGTCGGCGGCGACCATCAAATCCGTGAG
C5              GGAACGACAGCAGCGGTACCTTCTTCAGCGACAGCCATCAAGTCTGTTAG
                **:*******..******** ** **.***.*..*******.** ** **

C1              CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
C2              CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
C3              CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
C4              CAGCAGACTGATGACGCCCAGTTCGCGCAGGCTGAACATCTGG-------
C5              CAGCAGACTAATGGCTCCAAGTTCAAGGAGGTTGGGAATCTGG-------
                *********.***.* **.*****..* *** **...******       

C1              --------------------------------------------
C2              --------------------------------------------
C3              --------------------------------------------
C4              --------------------------------------------
C5              --------------------------------------------
                                                            



>C1
ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTTCTCCT
GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA
TCCCCACCTCATCACGCCTGGCCGCTGAACGGGAGGAGCAGCAGTTGTCC
CGGCAGGACGTAGGACGGCTCAGCTACCAGAGTATCCATCGTATGCTGAG
GGACGAAAACGAACCGGATAGCTTTCGGGGGGAATTGCGATACCAACAGA
AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT
CTCACCCACCGCGATTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA
GGGCGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG
AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGA
AATAACTCCCTGGAGGTAATACCCTTGAGTTTGGCAGACACCAATATGTC
ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT
CTACGAGCTTTTTTGCCCAGCGATTGCCTCAGTTGAAAAATCTGAATCTG
GCTCACAATGAATTGCTAAATATTTCCCGGGAATCATTCTATAATTTATT
GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT
ATGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
AACCGCTTGAGTGGATCCGCTATTCGTGCTCTGCAAGGAATTCCGGATTT
GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG
AGTTCGTTGCTTCCTGGAGCCTAAAGGAGTTGGATGCCAGTGGCACTGGA
TTGTGTCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT
GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC
CGCTGCTGCAGTATCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG
GACGATGCCTTGGGACGATTGGAGCTCCTCGAATCCCTTTTCCTAGACCG
TAATCTACTGATGCGAGTGCCAAGTAGTCTGCCGCCATCGCTGGAACACT
TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCACAGGCTTTTGTG
GGATTGGTCAATCTACAGACTCTGGACTTATCCAACAATCGATTGATCTT
CCTGCCCCCGCTATCGCTCCCCAAATTGCTCACCCTGAATCTGGAATCGT
CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG
CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGCGGGTCAATCGA
ATGGGGCAAGTGTAAGTGGGCGCGTGGATTTGAAGACGGAGTATCTGCAA
TTCCACAATTTTTACGAAAACTTCAGCAGCCGAGAGTGTGGTATAAGAAA
ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTAACAAGGGCATCAG
CTACATTAACAACAACACCCAGAAGTATGTCAAAAGTTGAAAAGTCACAA
GAAGCACAAGCAACAGCAACATCAGTGGAAGTAGCAGCGGCAACAGCAGC
AACATCAGAAAAAACAGGC---ATACAAGCAACA----------------
--TCAGCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCA
ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC
AGCAGCAGCA---------------ATACAATCAGCTGGCAACATCCCTG
CCCAGTTAACCACAAAAACGTTGCGGCCCACAGAAACAACTTCGTTAGCG
CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
CGCTTCCCATTTTGGCAACACGAGATGCTGCCACA---------------
---------------------GCAACAACGGAAATAAATTCCGACAAGCC
AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA
TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA
CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA----------
-----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTATTGGT
GGATGCCGAGCAGTTGTTGCTGCCTGGTACGGCCACCGTGGCGGATGCGG
ATTCG------GAAGTTCTGGACCCGAGCCAACAA---CATCAGTCAGCG
GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGGCAAGCGGATGCAAT
AAACGGCGACACG------------AAGTCGCCGGCGAAAGGCCACAAAA
AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG
GCAAAAACCGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA
ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGTTGAGCA
CCTTTGCGCAGCTTAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG
GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA
TCATCCAGGAGTCATGCTCCTGGTGGCCTGCGTTTTGTTCATCGTCCTGC
TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC
AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGACACCTAAACGAAAC
CGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
GCGGTGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA
GCACCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGGGAACTGCAACA
GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTGGCGGACAAGAGCTCCT
CCACCTCGTCTTCCTCG------TCGGGAAGCAGTCGCAGTAGCCTGCAC
TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCGCCCAGTAGTCC
ACCAGCAGCCAACCTGCCCAGTTTGCCCATGGAACTTTTGGGCAGCCGGA
GTAATGCCCTCGGATGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC
GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG
CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
--------------------------------------------
>C2
ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCCT
GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGTCA
TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGTTGTCC
CGGCAGGACGTGGGACGGCTCAGCTACCAAAGTATCCATCGCATGTTGAG
GGACGAAAACGAACCTGCCAGCTTTCGGGGGGAATTGCGATACCAACAGA
AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT
CTCACCCACCGCGACTTAAGGACATTCAATAGCACTGGCGGTCAGTGGAA
GGGGGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG
AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGT
AACAACTCCCTGGAGGTTATACCCTTAAGTTTGGCAGACACCAATATGTC
ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT
CTACGAGCTTTTTTGCCCAGAGATTGCCTCAGTTGAAAAATCTGAACCTG
GCTCACAATGAATTGCTAAACATTTCCCGGGAATCATTCTACAATTTGTT
GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT
ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
AACCGCTTGAGTGGATCCGCAATTCGTGCTCTGCAGGGAATTCCGGATTT
GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG
AGTTCGTCGCTTCCTGGAGCCTCAAAGAGTTGGATGCCAGTGGCACTGGA
TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCTGTGAGGACTCTCAAGTT
GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC
CGCTCCTGCAGTACCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG
GACGATGCTCTGGGACGATTGGAGCTCCTCGAATCACTTTTCCTCGACCA
CAATCTTCTGATGCGAGTGCCCAGCAGTCTGCCACCATCGCTGGAACACT
TATTTCTGCAGCACAATCAGATAATGGAACTTCCGCCACAGGCTTTTGTG
GGATTGGTCAATCTACAGACTCTGGACTTATCTAACAATCGATTGATCTT
CCTGCCCCCGCTATCACTGCCCAAATTGCTCACCCTGAATCTGCAATCGT
CAGGGGTGGAGAGTGTTAGTCAATCGATAGTGCACACACTGCCACAGTTA
AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGAG
CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA
ATGGGGCAAGTGTGAGTGGGCGCGTGGATCTAAAAACGGAGTATCTGCAG
TTCCACAATTTCTACGAAAACTTCAGCAGCCGTGAGTGTGGTATAAGAAA
ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTGACAAGGGCAGCAG
CAACATTAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCACAA
GAAGCACAACCAACAGCAACATCAGTGGAAGTAGCAGCGGCCGCAGCAGC
AACATCAGAAAAAACAGAC---ATACACGCAACACCAGCAGCAGCA----
--CCATCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCG
ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC
AGCAGCAGCA---------------ATGCAATCAGCTGGCAACATCCCTG
CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
CGCTTCCCATTTTGGCAACACGAGATGCTGCTACA---------------
---------------------GCAACAACGGAAATAAATTCCGACAAGCC
AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA
TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA
CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA----------
-----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT
GGATGCCGAACAGCTGCTGCTGCCTGGTACGGCCACCGTGGCAGATGCGG
ATTCG------GAAGTCCTGGACCCGAGCCAACAA---CATCAGTCAGCG
GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT
AAACGGCGACACA------------AAGTCGCCGGCGAAAAGCCACAAAA
AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG
GCGAAAACAGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA
ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGCTGAGCA
CCTTTGCGCAGCTCAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG
GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA
TCATCCCGGAGTCATGCTCCTTGTGGCCTGCGTTTTGTTCATCGTCCTGC
TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC
AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGGCATCTAAACGAAAC
CGATGATGCGCATAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
GCGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA
GCACCCTACAGCTCCCCGCTCCACAATCTGCAAGCGCGGGAACTGCAACA
GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTAGCGGACAAGAGCTCCT
CCACCTCGTCATCCTCA------TCGGGAAGCAGTCGCAGTAGCCTGCAC
TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCCCCCAGTAGTCC
AGCAGCAGCCAACCTGCCAAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
GTAATGCCTACGGTTGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC
GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG
CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
--------------------------------------------
>C3
ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT
GGTCTGGACGTGGCTAACAAGGCTGGTGGTGGCGACCCATCTGGTCGACA
TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGCTATCC
CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG
GGACGAAAACGAACCGGCCAGCTTTAGGGGGGAATTGCGATACCAACAGA
AACGCCACAAAAGGGAGCTGGAGCTCAATGCTCCGGCAAACAAGCTGAAT
CTCACCCACCGCGACTTAAAAACATTCAATAGCACTGGTGGTCAGTGGAA
GGGCGACTTTCAGGTCATCACCGCCATGGATCTGAGCAGCAATCAACTGG
AGAACGTCAGCTTGGACAACTTCAATCAACTAAGGCAGCTGGACTTGGGC
AATAACTCCCTGGAGGTTATACCCCTGAGTTTGGTCGACAACAATAAGTC
ACTACCCCTTGTAACGCTCGATCTATCCTGCAACGAATTCAGACAAATTT
CTACGAACTTTTTTGCCCAGCGATTGCCTCAGTTGAAACATCTGAACTTG
GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT
GGAACTACAAACGTTAATTCTCAGTCACAACAACATCTCGGATATAGACT
ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT
AACCGCTTGAGCGGATCCGCTATCAGAGCTCTGCAGGGAATTCCGGATTT
GGTCAGCCTTTCAATCGCTTACAATCCAGAAGTGGGAGTGGCGATGCAGG
AGTTCGTCGCATCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGCACTGGA
TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT
GTCCGACAATTGGCTCAAGGCAATTAATTGCGGCGACATGGACAGCTACC
CACTGCTGCAGTACCTTGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG
GACGATGCCCTGGGACGACTGGAGCTCCTCGAGTCCCTTTTCCTCGACCA
CAATCTTCTAATGCGAGTGCCCAGCAGCCTGCCGCCATCGCTGGAACACC
TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCTCAGGCTTTTGTG
GGATTGGTCAATCTGCAGACTCTGGACTTATCCAGCAATCGATTGATCTT
CCTGCCCCCGCTTTCGCTGCCCAAATTGCTCACCCTGAATCTGCAATCGT
CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
AGGGATCTTTTACTAGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG
CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA
GTGGGGCAAGTGTGAGTGGGCGGGTGGACTTGAAGACGGAGTATCTGCAG
TTCCACAATTTTTACGTAAACTTCAGTAGCCGAGGGTGTGTCATAAGAAA
ACCGGAAAATGACACAAAGCTGCCTTCTTGCAGCCTGACAAGGGCAGCAG
CAGCATCAACAACAACACCCGGAAGTATGTCAAAAGTTAAAAAGTCAAAA
GAAACACAAGCACCAGCAACATCAGTGGAAGTAGCGGAGGCAACAGCAGC
AATATCAGAAAAAACAGAC---ACCCAAGCAACATCAGCTGCAGCAGCAG
ATACAGCAGAGCAGTCGACTGCAGCAGCAACAACAGCGGAAAAAGAAGCA
ATCCCAACAGCAACATCAAGCGACACCACAGCAACACCAGCACTCGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAATGCAATCAGCTGGCAACAGCCTTG
CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
AACGCCAGCAAAGAACCTGCCAAGTTTAGCCCAGACAATGGCAACAACAG
CGCTTCCCATTTTGGCAACACGAGATGCCGACACG---------------
---------------------GCAACAACAGAAATAAATTCCGACAAGCC
AACGAACATTAGCGGTGCCACAAAAACAGCAGCAACATCAGCTGCTGAAA
TACCAACAACACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA
AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA
CCCAACAAGGGACACATCCGGTCAAGTTGCAACACCGCCA----------
-----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTCCTGGT
GGACGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG
ATGCGGATTCGGAAGTTCTGGACTCGAGCCAACAA---CATCAGTCAGCG
GAGCAGGAAAAGCACCAGCCAGCGACTGATAAGCGACAAGCGGATGCAAT
AAACGGCGACACA------------AAGTCGCCG---AAAAGCCACAAGA
AGAAACCATCGCTGAGCATTAAGAAGATGACCTACACTACCAAACATGTG
GCAAAAGCCGCGGAGGACATGGCAGCCACCGCGAAGACATCGCAACATCA
ACATAGCAGTGTGAACACACCCAAGGAGTCTACTCCCGAGGAGCTGAGCA
CCTTTGCCCAGCTAAAAGCCTTCGTAGAGCTAAAGAGCGAATCGAAACCG
GAACACCTAATGGACCAGCGAGAGGAAAACCATCACAATCTCACAGGAAA
TCATCCCGGGGTTATGCTTCTGGTAGCCTGCGTTTTGTTCATCGTGCTGC
TAGCCGGTCTGGCCCACGTCTATCGCTGTGAATTGCCCTGGCAGAGGAGC
AGCCGCTCCGGACAATCGCGACCGCATCATCAAAGGCATCTGAACGAAAC
GGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG
GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGCGAGAA
GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA
GCAGCGCTGCCAGCAATTCTACAGCTCCTCGCTGGCGGACAAGAGCTCCT
CCACCTCGTCATCCTCG------TCGGGAAGCAGTCGCAGCAGCCTGCAC
TCGCCCAGCAGAGACGACAGCTACTACATAGAGATGGCGCCCAGTAGTCC
ACCAGCAGCCCACCTGCCCAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
GCAATGTCCTCGGTTGCCGGGTGGACCGAGTGGCTGCCACCGATCTGGGC
GGTACGACAGAGGCGGTACCTTCCTCGGCGGCGACCATCAAGTCGGTCAG
CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG-------
--------------------------------------------
>C4
ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT
TGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA
TCCCCACCTCATCACGCCTGGCCGCCGAGCGGGAGGAGCTGCAGTTATCC
CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG
GGACGAAAACGAACCGGCCAGCATTCGGGGGGAATTGCGATACCAACAGA
AACGCCACAAAAGGGAGCTGGAGCTGAATGCTCCGGCAAACAAACTTAAT
CTCACCCACCGCGACTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA
GGGCGACTGTCAGGTGATCACAGCCATGGATCTGAGCAGCAATCAACTGG
AGAGCATCAGCTTGGACAAATTCAATCAACTAAGGCAGCTGGACTTGGGC
AATAACTCCCTGGAGGTTATACCCCTGAGCTTGGCCGACAACAATAAGTC
ACTACCCTTTGTAACGCTCGATCTATCCTGTAATAAATTCTGCCAAATGT
CTACGAGCTTTTTTGCCCAGCGATTGCCTCTGTTGAAACATCTTAACTTG
GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT
GGAACTACAAACGTTAGTTCTCAGTCACAACAAAATCTCGGATATAGACT
ATGAAACATTTTTGGCGCTACCGAATCTGCAATATCTGGATTTATCCCAT
AACCGCTTGAGTGGTTCCGCCATCCGAGCTCTGCAGGGAATTCCGGATTT
GGTCAGCCTTTCTATCGCTTACAATCCTGATGTGGGAGTTGCGATGCAGG
AGTTCGTCGCGTCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGTACTGGA
TTGTGCCAGGTGCCTGCAGCTTTAGCCCAATCCGTGAGGACTCTCAGGTT
GGCCGACAACTGGCTTAAGGCAATTAATTGCGGTGACATGGACAGTTATC
CACTGCTGCAGTACCTCGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG
GACGATGCTCTGGGACGACTGGAGCTCCTCGAATCCCTTTTCCTGGACCA
CAATCTTCTGATGCGAGTGCCCAGTAGCCTGCCGCCATCGCTGGAACACT
TATTTCTGCAGCACAATCAGATAATGGAGCTCCCGGCGCAGGCTTTTGTG
GGATTGGTCAATCTGCAGACTCTGGACTTATCCAACAACCGATTGATTTT
CCTGCCCCCACTTTCGCTGCCCAAATTGCTAACCCTGAATCTGCAATCGT
CAGGAGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA
AGGGATCTTTTGCTAGAGGACAACCCTATCAAGTGCAGCGATTTGCTGGG
CATTGCCGAATGGGCCAGTCCATGCAGGTCAGTGGATGTGGGTCAATCGA
ATGGGCCAAGCGTGAGTGGGCGGGTGGATTTGAAGACGGAGTATCTGCAG
TTCCACAATTTTAACGAAAACTTCAGTAGCCGAGAGTGTGGTATAAGAAA
ACCGGAAAATTACACAATGCCGCCTTCTTGCAGCGTGATAAGGGCAGCAG
CAACATCAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCAAAA
GAAGCACAGGCAACAGCAACATCAGTGGAAGTAGCGGCGGCAACAGCAGC
AACATCAGAAAAAACAGAC---ATACAAGGAACATCAGCTGCA-------
-----------CAGTCCACTGCAGCAGCCACAACAGCGGAAAAAGAAACA
ATCCCAACAGCAACATCGAGCGACACCACAGCAACACCAACACTCGCAGC
AGCAACA------------------ATGCAATCAGCTGGCAACAGCCTCG
CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG
CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA
AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
CGCTTCCCATTTTGGCAACACGAGATGCCGGCACA---------------
---------------------GCAACAACAGAAATAAATTCCGACAACCC
AACGAGCATTAGCGGTGCCACAAAAACAGCAGCAGCATCAGCCGCTGAAA
TAGCAACAACACCAGCAATTGAAGTGCCGCAAACCATTTTGGCCGGCAAA
AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA
CCCAACAAGGGACACGTCTGGTCAAATTGCAACACCACCA----------
-----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA
CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT
GGATGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG
ATTCG------GAAGTTCTGGACTCCAGCCAACAA---CATCAGTCAGCG
GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT
AAACGGCGACACA------------AAGGCGCCGGCGAAAAGCCACAAAA
AGAAACCATCGCTGAGCATCAAAAAGATGACCTACAGTACCAAGCATGCG
GCAAAAACCGTGGAGGACATGGCAGCTACCTCGAAGACACCGCAGCACCA
ACATAGCAGTGTGAACACACCCAAGGAGGCTATTCCCGAGGAGCTGAGCA
CCTTTGCCCAGCTAAAAGCATATGTAGAGCTAAAGAGCGAATCGAAACCG
GAACACCTAATGGATCAGCGGGAGGGAACCCATCACAATCTTACAGGAAA
TCATCCCGGTGTTATGCTCCTGGTGTCCTGCGTTTTGTTTATCGTGCTGC
TTGCCGGTCTGGCCCACGTCTACCGCTGTGAATTGCCTTGGCAGAGGAGC
AGCCGTTCTGGACAATCACGACCGCATCATCAAAGGCATCTAAACGAAAC
GGATGACGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAATTCCAATG
GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACTGCACCCGGAGAGAA
GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA
GCAACGCTGCCAGCAATTCTACAGCTCCTCTCTGGCGGACAGAAGCTCCT
CCACCTCGTCTTCCTCG------CCGGGAAGCAGTCGCAGTAGCCTGCAC
TCGAACAGCAGGGATGACAGCTACTATATAGAGATGGCACCCAGTAGTCC
ACCAGCAGCCAACCTGCCTAGTTTGCCCATGGAACTCTTGGGCAGCAGGA
GCAACGCCCTTGGCTGCCGGGCGGACCGAGTGGCAGCCACCGATCTGGGC
GGTACGACAGAGGCGGTACCTTCGTCGGCGGCGACCATCAAATCCGTGAG
CAGCAGACTGATGACGCCCAGTTCGCGCAGGCTGAACATCTGG-------
--------------------------------------------
>C5
ATGGTGAAAATTGTGAACCGACACTGTGATCTAGGCCTGGCCCTACTCCT
GGCCTGGACATGGCTAACAAGGCAGGTGGTTTCGGCCCATCTGGTCGATA
TTCCCACCTCATCTCGCCAGGCTGCCGAACGGGAGGAGCAGCAGTTATCC
CTGCAGAATGGCGGTGGTCTCAGCTACCCGAGCATTCATCGAATGCTGAG
GGACGAAAACGAACCGGCCAGCTTTCGAGGGGAATTACGATACCAACAGA
AACGTCACAAAAGAGAGTTGGAGCTGAATGCTCCAGCCAACAAGCTTAAT
CTCACCCACCGCGACTTGAGGAACTTTAATAGCAGTGGTGGTCAGTGGAA
GGGTGACTTTCAGGTGATCACTGGTATGGATCTGAGTAGTAATCAACTGG
AAAGTCTCAGTTTGAACAACTTCAATCAGCTGAGGCAACTGGATTTGGGT
AACAACTCTTTGGAGGTTATACCTCTGAGCTTAGCTGATACCAACAAATC
ACTTCCGTTCGTAACACTCGATCTTTCCTGCAACAAATTCAGCCAACTTT
ACACCAACTTCTTTGTCCAGCGATTGCCTGAACTTAAGAACCTCAACTTG
GCTTACAATCAATTGTTAAACATTTCAAGGGAATCATTCTACAATTTGTT
GGAACTACAAACATTAATACTCAGTCACAACAACATCACGGATATAGACT
ACGAAACCTTTTTGGCTCTGCCGAATCTGCAACATCTGGACTTATCCCAC
AACCGCTTGAGTGGCTCTGCAATACGAGCTTTGCAGGGAATTCCGGATTT
GGTCAGCCTTTCCATTGCCTACAATCCGGAAGTGGGAGTGGCCATGCAGG
AGTTCGTCGCCTCCTGGAGTCTCAAGGAGTTGGATGCTAGTGGCACTGGA
TTGTGCCAGGTGCCAGCAGCTTTAGCCCAATCTGTGAGGACTCTTAAGTT
ATCCGACAACTGGTTAAAGGCCATCAACTGCGGCGACATGGACAGCTATC
CCCTGCTGCAGTACCTTGATCTCTCTCACTCCCGGATTGCCCAAGTGGAA
GACGATGCCCTGGGACGTTTGGAGCTCCTTGAATCTCTTTTCTTGGACCA
CAATCTTCTAATGCGAGTGCCAAACAGTCTACCACCATCACTGGAACACC
TATTCCTACAGCACAACCAGATAATGGAACTGCCACCTCAGACTTTCGTT
GGCCTGGTCAACCTGCAGACCCTGGACTTGTCCCACAATCGTTTGATCTT
TCTGCCCGCTCTTGCACTGCCCAAATTGCTTACCCTAAATCTGCAATCTT
CAGGTGTAGAGAGTGTCAGCCAATCGATAGTGCACACATTGCCCCAGTTG
AGGGATCTCTTACTGGAGGACAATCCCATAAAATGCAGCGATTTGCTGGG
CATTGCCGAGTGGGCCAGCCCTTGCAGGTCAGTGGATGTGGGTCAGTCGA
ATGGGAGAAGTCCAAGTGGGTGGGTGGACCTCAAGACGGAGTATCTGCAA
TTTCACAATTTTTACGACAACTTCAGTAGCCGAGAGTGTGGAGCCAGGAA
ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTCACAAGTGCCACAG
CAGCATTAACAACAACGTCGAGAACTATGTCAAAAGTTAAAAAGTCAAAA
GGAGCAGACACGACAGCAGCAGCAGCAGCAGTGGCAACATCAGAAAAACA
CACAGCACATACAACAGACGACACACAGGCAACGTCAGCATCA-------
--------ACTCAGCCAACTACAGGAGCAACATCAGCGGAAAAAGCAGCA
ATTCCAACAGCAACACCAACTTCACCAACAGCA-----------------
-------------------------ATGCAATCAGCTGGCAACAGCGTTG
CCCAGTTAACCACAAAAACTTTGCGGCCAACAGAAACAACTTCGTTAGAG
CAACTGCAGCAGCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGC
CACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG
CGGTTCCCATTTTGGCAGCCCCAGCAGCAGCAACAACACCAGCAGCTGCA
GCAACAACAACAACAACAACAGCAGCAACAGCAATAAATTCCAACAAGCC
AACGAACATTAGCGGTGCCACAAAAACAGCAACA---------GAAATGG
TGGCAGCACCACCAGCAATTGAAGTGCCACAAACAATTTTGGCCGGAAAA
AAATCTGACAAAATGCCAACCGATAAGGCACACGAGACTTTATTAAAATA
CCCAACAAGGGACACATCCGGTCAAGCAGCAGCATCAGCAGCAGCAGCCG
CAACACTGTCACACAAACATGCAACATTGCAGCTGCACGTTAAGGATCGA
CATCTAATTGGCACACCGCTTCTGATGCACAAGGGCGATGTCCTTTTGGT
GGATGCCGAGCAGTTGTTGCTGCCTGGAACGGCAACCGTGGCGGATGCGG
ATTCG------GAAGTCTTGGACTCGAGCCAACAACAACATCAGTCGGCG
GAGCAGGAAAAGCACCAGTCAGCGGCTGATAAGCGACAAGCGGAAGCCAT
AAATGGCGACTCAAAGTCGTCGTCGTCGTCGCCACCAAAAAGTCACAAAA
AGAAGCCATCGCTGAGTATCAAGAAGATGACCTACAGTACCAAACATGCA
GTAAAAGCCGTTGAGGAACTACAAGCCACCTCCAAAACACCCCAGCACCA
ACACAGCAGTGTCAACACACCCAAAGAGGCTTCGCCGGAGGAACTCAGTA
CTTTCGCCCAGCTAAAGGCCTATGTGGAACTAAAAAGCGAATCGAAACCA
GAACATTTAATGGACCAGCGAGAGGAAAACCTTCACAATCTTACAGGAAA
TCATCCTGGAGTAATGTTGCTGGTAGCCTGCGTATTATTCATCGTATTGC
TAGCAGGATTGGCTCATGTCTATCGCTGTGAATTGCCCTGGCAGAGAAGC
AATCGACCTGGACAGATGCGCCCGCATCATCAAAGGCATCTAAACGACAC
CGATGATGCCCATAGTTTTCTGCACTATCAGGGCTCTGTGAATTCCAATG
GAGGAGATCCCGCCCGTTTACAAAAGTGGCATCATAGCACTCGGAGAGAA
GCTCCTTATAGTTCTCCACTTCACAATCTGCAAGCTCGCGAGTTGCAACA
GCAACGTTGCCAGCAATTCTATAGCTCATCTCTGGCGGACAAGAGCTCCT
CCACTGCCTCCTCGTCTTCCTTATCGGGAAGCAGCCGCAGTAGCCTGCAT
TCTCCCAGTAGAGATGATAGCTACTACATAGAGATGGCTCCCAGTAATCC
ACCATCCGCCACCCTGCCTAGTTTACCCATGGAACTGTTGGGCAGCAGGA
GTAATGGCCTAGGAAGCCGAACAGATCGAGTGGCTGCCACCGATCTGGGC
GGAACGACAGCAGCGGTACCTTCTTCAGCGACAGCCATCAAGTCTGTTAG
CAGCAGACTAATGGCTCCAAGTTCAAGGAGGTTGGGAATCTGG-------
--------------------------------------------
>C1
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS
RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ
EAQATATSVEVAAATAATSEKTGoIQATooooooSAAQSTAAATTAEREA
IATATSSDTTATPTLAAAAAoooooIQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATooooo
oooooooATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTPoooooooHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDPSQQoHQSA
EQEKHQSATDKRQADAINGDTooooKSPAKGHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH
SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIW
>C2
MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG
NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL
AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ
FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ
EAQPTATSVEVAAAAAATSEKTDoIHATPAAAooPSAQSTAAATTAEREA
IATATSSDTTATPTLAAAAAoooooMQSAGNIPAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATooooo
oooooooATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK
KSDKMPADKAHETLLKYPTRDTSGQVATTPoooooooHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDPSQQoHQSA
EQEKHQSATDKRQADAINGDTooooKSPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH
SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG
GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIW
>C3
MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG
NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL
AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV
GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ
FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK
ETQAPATSVEVAEATAAISEKTDoTQATSAAAADTAEQSTAAATTAEKEA
IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADTooooo
oooooooATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQVATPPoooooooHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQoHQSA
EQEKHQPATDKRQADAINGDTooooKSPoKSHKKKPSLSIKKMTYTTKHV
AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP
EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH
SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIW
>C4
MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS
RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN
LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG
NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL
AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV
GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ
FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK
EAQATATSVEVAAATAATSEKTDoIQGTSAAooooooQSTAAATTAEKET
IPTATSSDTTATPTLAAATooooooMQSAGNSLAQLTTKTLRPTETTSLA
QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGTooooo
oooooooATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK
KSDKMPADKAQETLLKYPTRDTSGQIATPPoooooooHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDSSQQoHQSA
EQEKHQSATDKRQADAINGDTooooKAPAKSHKKKPSLSIKKMTYSTKHA
AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP
EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS
SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSSooPGSSRSSLH
SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG
GTTEAVPSSAATIKSVSSRLMTPSSRRLNIW
>C5
MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS
LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN
LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG
NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL
AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH
NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG
LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE
DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV
GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL
RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ
FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK
GADTTAAAAAVATSEKHTAHTTDDTQATSASoooooTQPTTGATSAEKAA
IPTATPTSPTAooooooooooooooMQSAGNSVAQLTTKTLRPTETTSLE
QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA
ATTTTTTAATAINSNKPTNISGATKTAToooEMVAAPPAIEVPQTILAGK
KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR
HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDSSQQQHQSA
EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA
VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP
EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS
NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE
APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH
SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG
GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 5 taxa and 3594 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1480093056
      Setting output file names to "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 1969739849
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 7843527427
      Seed = 1823930664
      Swapseed = 1480093056
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 88 unique site patterns
      Division 2 has 62 unique site patterns
      Division 3 has 152 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -10065.216368 -- -25.624409
         Chain 2 -- -10065.216368 -- -25.624409
         Chain 3 -- -10058.092041 -- -25.624409
         Chain 4 -- -10065.216368 -- -25.624409

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -10064.613834 -- -25.624409
         Chain 2 -- -10110.160275 -- -25.624409
         Chain 3 -- -10065.216368 -- -25.624409
         Chain 4 -- -10117.050133 -- -25.624409


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-10065.216] (-10065.216) (-10058.092) (-10065.216) * [-10064.614] (-10110.160) (-10065.216) (-10117.050) 
        500 -- [-8818.565] (-8835.901) (-8854.050) (-8883.515) * [-8806.386] (-8882.085) (-8885.414) (-8866.877) -- 0:00:00
       1000 -- [-8774.697] (-8804.022) (-8794.227) (-8839.323) * (-8778.394) (-8828.920) (-8803.741) [-8784.524] -- 0:00:00
       1500 -- (-8730.941) (-8756.461) [-8722.238] (-8737.929) * (-8753.104) [-8740.556] (-8766.289) (-8753.638) -- 0:11:05
       2000 -- (-8701.490) [-8711.458] (-8700.887) (-8709.095) * (-8713.211) [-8695.952] (-8707.765) (-8696.049) -- 0:08:19
       2500 -- (-8676.591) [-8674.709] (-8672.735) (-8695.569) * (-8699.975) (-8689.414) [-8680.977] (-8684.017) -- 0:06:39
       3000 -- (-8674.696) [-8669.789] (-8674.419) (-8676.227) * (-8679.213) (-8678.312) [-8675.990] (-8676.898) -- 0:05:32
       3500 -- (-8671.468) (-8666.100) [-8668.288] (-8674.203) * (-8678.373) (-8674.670) (-8668.723) [-8673.006] -- 0:04:44
       4000 -- [-8668.200] (-8672.990) (-8667.986) (-8671.362) * (-8679.097) [-8668.513] (-8675.926) (-8666.370) -- 0:08:18
       4500 -- (-8663.688) (-8673.844) [-8666.194] (-8668.133) * (-8672.278) (-8670.418) (-8674.928) [-8666.902] -- 0:07:22
       5000 -- (-8661.771) (-8668.673) [-8664.020] (-8669.561) * [-8667.038] (-8666.532) (-8669.626) (-8676.731) -- 0:06:38

      Average standard deviation of split frequencies: 0.000000

       5500 -- (-8666.183) (-8667.833) (-8671.672) [-8669.843] * (-8675.215) (-8670.275) (-8664.154) [-8666.573] -- 0:06:01
       6000 -- (-8668.051) [-8665.115] (-8671.890) (-8677.997) * (-8668.038) (-8670.651) [-8668.712] (-8662.227) -- 0:08:17
       6500 -- [-8665.948] (-8672.979) (-8670.199) (-8672.479) * (-8663.208) (-8672.380) (-8668.964) [-8669.801] -- 0:07:38
       7000 -- [-8666.276] (-8661.099) (-8666.902) (-8662.315) * (-8671.922) [-8663.861] (-8665.150) (-8670.383) -- 0:07:05
       7500 -- (-8667.103) (-8659.335) (-8677.548) [-8668.221] * (-8670.116) [-8669.427] (-8665.238) (-8674.374) -- 0:06:37
       8000 -- [-8663.755] (-8670.468) (-8669.187) (-8669.600) * (-8663.341) (-8669.164) (-8663.344) [-8667.214] -- 0:08:16
       8500 -- (-8665.853) (-8670.780) (-8666.570) [-8664.378] * [-8665.438] (-8670.113) (-8670.636) (-8668.852) -- 0:07:46
       9000 -- (-8660.815) (-8671.173) (-8671.026) [-8666.506] * [-8667.050] (-8669.406) (-8664.848) (-8668.372) -- 0:07:20
       9500 -- [-8668.013] (-8664.438) (-8668.469) (-8669.672) * (-8668.336) (-8675.298) [-8664.528] (-8667.151) -- 0:06:57
      10000 -- [-8662.944] (-8668.193) (-8670.588) (-8670.523) * [-8666.341] (-8671.761) (-8667.241) (-8667.087) -- 0:06:36

      Average standard deviation of split frequencies: 0.000000

      10500 -- (-8662.292) (-8665.861) (-8667.372) [-8666.975] * (-8668.594) (-8674.951) (-8664.761) [-8668.596] -- 0:07:51
      11000 -- (-8663.993) (-8677.982) [-8667.335] (-8663.555) * [-8669.675] (-8670.907) (-8666.795) (-8672.407) -- 0:07:29
      11500 -- (-8664.475) (-8672.577) [-8669.289] (-8665.419) * (-8668.219) (-8671.527) (-8662.850) [-8667.326] -- 0:07:09
      12000 -- (-8666.798) [-8669.810] (-8667.058) (-8670.132) * (-8671.805) (-8669.161) [-8663.722] (-8666.942) -- 0:06:51
      12500 -- (-8668.806) (-8674.464) (-8666.369) [-8666.768] * [-8665.226] (-8666.905) (-8667.203) (-8664.113) -- 0:07:54
      13000 -- (-8668.157) [-8670.488] (-8665.199) (-8667.089) * (-8670.449) [-8668.032] (-8668.222) (-8670.639) -- 0:07:35
      13500 -- (-8668.912) (-8670.369) (-8668.451) [-8666.368] * [-8667.526] (-8672.214) (-8663.368) (-8666.766) -- 0:07:18
      14000 -- (-8667.911) [-8665.718] (-8666.795) (-8670.695) * (-8668.069) (-8668.641) (-8661.717) [-8667.796] -- 0:07:02
      14500 -- (-8663.330) (-8664.440) (-8668.722) [-8664.600] * (-8669.160) [-8672.225] (-8663.960) (-8668.491) -- 0:07:55
      15000 -- [-8665.040] (-8663.924) (-8666.989) (-8666.767) * [-8667.121] (-8662.878) (-8663.580) (-8668.471) -- 0:07:39

      Average standard deviation of split frequencies: 0.000000

      15500 -- [-8665.453] (-8664.045) (-8668.464) (-8664.933) * (-8667.675) (-8666.058) (-8663.706) [-8671.896] -- 0:07:24
      16000 -- [-8663.526] (-8673.383) (-8668.727) (-8668.850) * (-8672.188) (-8666.775) (-8670.675) [-8669.485] -- 0:07:10
      16500 -- (-8667.109) (-8666.975) [-8667.406] (-8676.087) * (-8666.468) [-8666.066] (-8670.239) (-8676.075) -- 0:07:56
      17000 -- (-8664.683) (-8669.130) [-8663.131] (-8670.927) * (-8669.710) (-8667.224) [-8664.799] (-8665.486) -- 0:07:42
      17500 -- (-8664.473) (-8664.257) [-8667.807] (-8673.147) * (-8664.023) (-8665.141) (-8666.564) [-8670.906] -- 0:07:29
      18000 -- [-8684.476] (-8671.133) (-8668.110) (-8668.539) * [-8664.138] (-8668.654) (-8665.526) (-8668.908) -- 0:07:16
      18500 -- (-8677.112) (-8662.204) [-8665.114] (-8681.418) * (-8666.317) (-8662.294) [-8665.868] (-8665.393) -- 0:07:04
      19000 -- (-8666.232) [-8663.479] (-8664.891) (-8667.192) * (-8663.168) (-8667.316) (-8667.345) [-8671.122] -- 0:07:44
      19500 -- (-8664.340) [-8664.331] (-8662.601) (-8662.708) * (-8665.783) [-8667.029] (-8662.051) (-8670.649) -- 0:07:32
      20000 -- (-8665.991) (-8669.204) (-8663.281) [-8662.929] * (-8667.401) [-8662.411] (-8668.693) (-8662.607) -- 0:07:21

      Average standard deviation of split frequencies: 0.000000

      20500 -- (-8667.068) [-8665.415] (-8668.095) (-8665.184) * (-8669.207) (-8666.970) (-8666.786) [-8667.037] -- 0:07:10
      21000 -- (-8664.351) (-8664.108) (-8664.478) [-8667.678] * (-8666.624) (-8663.410) (-8664.561) [-8665.525] -- 0:07:46
      21500 -- [-8659.921] (-8664.140) (-8666.680) (-8667.648) * (-8670.497) (-8667.762) (-8668.633) [-8664.158] -- 0:07:35
      22000 -- (-8663.155) [-8668.485] (-8667.196) (-8666.982) * (-8668.697) (-8673.036) [-8665.624] (-8665.607) -- 0:07:24
      22500 -- (-8664.387) (-8672.988) (-8667.296) [-8664.575] * (-8671.088) (-8671.311) [-8665.491] (-8667.908) -- 0:07:14
      23000 -- (-8670.146) (-8665.784) (-8671.516) [-8663.927] * [-8664.227] (-8677.767) (-8675.247) (-8673.315) -- 0:07:47
      23500 -- (-8666.895) (-8666.071) (-8670.524) [-8664.626] * [-8666.141] (-8674.273) (-8669.946) (-8672.191) -- 0:07:37
      24000 -- [-8666.426] (-8666.605) (-8663.891) (-8672.497) * (-8663.182) (-8667.403) (-8661.461) [-8664.627] -- 0:07:27
      24500 -- [-8666.455] (-8668.391) (-8670.812) (-8660.624) * [-8666.385] (-8665.325) (-8661.464) (-8674.544) -- 0:07:17
      25000 -- [-8668.680] (-8672.482) (-8664.433) (-8659.158) * (-8665.834) (-8675.539) [-8668.522] (-8664.198) -- 0:07:09

      Average standard deviation of split frequencies: 0.000000

      25500 -- [-8670.395] (-8662.329) (-8663.407) (-8668.065) * (-8663.081) (-8675.831) [-8667.035] (-8669.911) -- 0:07:38
      26000 -- (-8665.358) (-8668.798) (-8666.489) [-8661.847] * [-8666.001] (-8671.384) (-8670.108) (-8667.986) -- 0:07:29
      26500 -- (-8665.114) [-8664.387] (-8669.526) (-8668.121) * (-8666.935) (-8672.573) [-8671.145] (-8670.075) -- 0:07:20
      27000 -- (-8667.720) (-8666.450) (-8671.157) [-8671.075] * (-8668.694) [-8666.047] (-8666.223) (-8664.064) -- 0:07:12
      27500 -- [-8673.249] (-8664.982) (-8666.215) (-8671.119) * (-8667.791) [-8664.165] (-8668.806) (-8665.887) -- 0:07:39
      28000 -- (-8672.016) (-8669.951) (-8667.876) [-8665.047] * [-8667.795] (-8663.693) (-8664.010) (-8671.878) -- 0:07:31
      28500 -- (-8667.589) [-8664.910] (-8668.153) (-8663.909) * (-8666.790) [-8665.684] (-8667.444) (-8673.299) -- 0:07:23
      29000 -- (-8671.927) (-8669.949) [-8671.037] (-8672.572) * (-8667.478) (-8669.768) [-8667.028] (-8671.643) -- 0:07:15
      29500 -- [-8669.315] (-8667.452) (-8676.260) (-8671.762) * (-8673.317) [-8666.017] (-8670.048) (-8673.768) -- 0:07:40
      30000 -- (-8679.948) (-8666.856) (-8671.757) [-8667.761] * (-8675.519) [-8662.643] (-8668.309) (-8670.126) -- 0:07:32

      Average standard deviation of split frequencies: 0.000000

      30500 -- (-8671.581) (-8664.698) (-8666.326) [-8675.325] * (-8666.920) (-8661.757) (-8663.876) [-8667.392] -- 0:07:25
      31000 -- [-8662.565] (-8665.345) (-8672.558) (-8667.897) * (-8668.359) (-8665.973) [-8665.230] (-8665.491) -- 0:07:17
      31500 -- [-8665.855] (-8669.095) (-8676.116) (-8666.930) * (-8667.256) [-8668.502] (-8672.962) (-8666.592) -- 0:07:41
      32000 -- (-8669.747) (-8667.036) [-8661.984] (-8662.431) * (-8670.828) [-8673.778] (-8674.140) (-8667.328) -- 0:07:33
      32500 -- (-8664.161) (-8664.486) (-8672.610) [-8667.713] * (-8667.384) (-8664.661) (-8673.163) [-8673.259] -- 0:07:26
      33000 -- [-8666.476] (-8670.434) (-8673.518) (-8662.018) * (-8672.800) (-8670.386) (-8672.206) [-8665.798] -- 0:07:19
      33500 -- [-8664.386] (-8669.641) (-8667.837) (-8670.586) * (-8667.347) (-8668.134) (-8664.193) [-8668.608] -- 0:07:12
      34000 -- [-8667.821] (-8663.433) (-8669.540) (-8670.561) * (-8666.800) [-8661.242] (-8666.248) (-8665.107) -- 0:07:34
      34500 -- [-8667.120] (-8663.380) (-8669.571) (-8664.826) * [-8664.492] (-8663.807) (-8664.968) (-8671.901) -- 0:07:27
      35000 -- (-8664.045) [-8670.479] (-8668.793) (-8668.218) * (-8675.382) [-8669.063] (-8662.071) (-8673.746) -- 0:07:21

      Average standard deviation of split frequencies: 0.000000

      35500 -- [-8662.787] (-8666.856) (-8672.531) (-8673.412) * [-8660.114] (-8667.606) (-8663.457) (-8665.966) -- 0:07:14
      36000 -- [-8663.681] (-8665.475) (-8675.568) (-8668.621) * [-8668.358] (-8674.133) (-8663.781) (-8667.123) -- 0:07:35
      36500 -- (-8676.645) [-8665.853] (-8670.557) (-8664.260) * (-8667.260) (-8662.885) [-8666.583] (-8662.540) -- 0:07:28
      37000 -- [-8669.666] (-8667.766) (-8670.265) (-8668.839) * (-8669.513) (-8668.776) [-8665.327] (-8662.167) -- 0:07:22
      37500 -- (-8664.294) (-8668.537) (-8668.750) [-8668.452] * (-8664.780) (-8666.250) [-8661.384] (-8666.756) -- 0:07:16
      38000 -- (-8670.451) (-8676.471) (-8671.565) [-8668.029] * (-8671.180) [-8666.632] (-8670.676) (-8673.514) -- 0:07:35
      38500 -- (-8669.173) (-8671.447) (-8668.221) [-8670.749] * (-8663.109) [-8667.950] (-8663.920) (-8670.504) -- 0:07:29
      39000 -- (-8675.151) (-8662.931) [-8668.670] (-8666.620) * (-8664.519) (-8670.808) [-8668.406] (-8666.343) -- 0:07:23
      39500 -- (-8672.357) [-8668.720] (-8664.080) (-8670.836) * (-8664.532) [-8671.969] (-8664.548) (-8669.662) -- 0:07:17
      40000 -- [-8667.806] (-8667.946) (-8669.396) (-8671.016) * [-8664.859] (-8670.810) (-8669.096) (-8672.267) -- 0:07:36

      Average standard deviation of split frequencies: 0.000000

      40500 -- [-8665.660] (-8668.278) (-8667.284) (-8669.242) * (-8668.235) (-8670.840) (-8664.929) [-8674.701] -- 0:07:30
      41000 -- (-8672.221) (-8671.229) [-8676.580] (-8673.007) * (-8664.042) (-8663.754) [-8668.029] (-8670.974) -- 0:07:24
      41500 -- (-8665.847) [-8670.907] (-8668.026) (-8673.233) * (-8668.255) (-8675.333) [-8665.097] (-8675.323) -- 0:07:18
      42000 -- (-8667.282) (-8670.043) (-8666.448) [-8673.038] * [-8664.145] (-8666.404) (-8671.041) (-8671.713) -- 0:07:13
      42500 -- (-8672.387) [-8664.698] (-8666.507) (-8670.267) * (-8670.273) [-8673.262] (-8668.995) (-8665.621) -- 0:07:30
      43000 -- (-8671.463) [-8667.067] (-8669.562) (-8667.225) * [-8670.455] (-8668.417) (-8669.220) (-8664.280) -- 0:07:25
      43500 -- (-8667.356) [-8672.230] (-8668.954) (-8672.702) * (-8666.663) [-8663.117] (-8662.650) (-8664.307) -- 0:07:19
      44000 -- (-8675.783) [-8667.999] (-8665.938) (-8671.790) * (-8659.702) (-8672.101) [-8665.151] (-8668.329) -- 0:07:14
      44500 -- [-8674.125] (-8670.446) (-8670.845) (-8669.030) * (-8665.479) (-8667.352) [-8664.652] (-8673.573) -- 0:07:30
      45000 -- [-8672.758] (-8672.465) (-8675.959) (-8666.609) * (-8670.193) [-8665.850] (-8665.470) (-8669.868) -- 0:07:25

      Average standard deviation of split frequencies: 0.000000

      45500 -- (-8672.156) [-8670.040] (-8671.743) (-8664.026) * (-8669.574) (-8677.040) [-8665.182] (-8666.708) -- 0:07:20
      46000 -- (-8670.567) (-8666.908) [-8668.667] (-8669.141) * (-8672.139) (-8664.955) [-8673.333] (-8676.686) -- 0:07:15
      46500 -- (-8667.938) (-8666.022) [-8662.469] (-8661.466) * (-8673.837) [-8670.521] (-8678.968) (-8663.079) -- 0:07:31
      47000 -- (-8670.366) (-8665.302) (-8669.001) [-8667.779] * [-8667.423] (-8662.077) (-8672.241) (-8665.661) -- 0:07:26
      47500 -- [-8674.060] (-8667.662) (-8666.154) (-8664.903) * (-8665.536) [-8664.814] (-8672.609) (-8668.382) -- 0:07:21
      48000 -- (-8670.161) (-8666.181) (-8663.075) [-8669.448] * (-8664.465) (-8669.116) (-8668.632) [-8670.187] -- 0:07:16
      48500 -- (-8668.900) [-8666.218] (-8666.301) (-8672.032) * [-8669.480] (-8671.209) (-8665.994) (-8673.390) -- 0:07:31
      49000 -- (-8666.103) (-8665.766) (-8669.285) [-8668.074] * (-8672.659) (-8669.191) [-8667.405] (-8672.487) -- 0:07:26
      49500 -- (-8671.532) (-8666.562) [-8670.869] (-8666.644) * [-8664.044] (-8669.606) (-8666.450) (-8670.929) -- 0:07:21
      50000 -- (-8668.768) (-8664.511) [-8669.905] (-8667.079) * [-8664.823] (-8668.924) (-8674.354) (-8668.933) -- 0:07:17

      Average standard deviation of split frequencies: 0.000000

      50500 -- (-8669.647) (-8669.162) [-8667.616] (-8666.191) * (-8675.522) (-8670.332) [-8671.893] (-8669.684) -- 0:07:12
      51000 -- (-8667.420) (-8673.991) [-8668.302] (-8671.118) * [-8668.409] (-8665.276) (-8665.820) (-8672.717) -- 0:07:26
      51500 -- (-8667.618) (-8665.249) (-8670.754) [-8668.452] * [-8669.895] (-8667.205) (-8667.757) (-8664.598) -- 0:07:22
      52000 -- (-8668.840) (-8667.745) (-8668.621) [-8669.326] * (-8664.406) [-8665.910] (-8670.218) (-8663.705) -- 0:07:17
      52500 -- (-8666.772) (-8667.943) [-8661.615] (-8677.836) * (-8663.539) (-8669.520) (-8672.422) [-8663.981] -- 0:07:13
      53000 -- (-8670.378) [-8668.016] (-8664.058) (-8668.703) * (-8663.759) [-8668.059] (-8668.243) (-8663.740) -- 0:07:26
      53500 -- [-8663.170] (-8668.343) (-8668.203) (-8666.658) * (-8665.708) (-8661.545) (-8669.954) [-8666.842] -- 0:07:22
      54000 -- (-8669.744) [-8670.998] (-8675.592) (-8668.833) * (-8668.099) [-8671.903] (-8669.318) (-8669.889) -- 0:07:17
      54500 -- (-8667.602) (-8670.369) (-8667.855) [-8665.862] * (-8671.925) [-8668.344] (-8665.851) (-8668.708) -- 0:07:13
      55000 -- (-8670.510) (-8663.698) (-8665.737) [-8665.525] * (-8668.212) [-8660.022] (-8661.049) (-8669.535) -- 0:07:26

      Average standard deviation of split frequencies: 0.000000

      55500 -- (-8665.468) [-8662.922] (-8667.942) (-8665.066) * (-8662.539) (-8665.769) [-8665.345] (-8669.191) -- 0:07:22
      56000 -- (-8672.451) [-8661.975] (-8669.175) (-8669.073) * (-8667.399) (-8669.539) [-8668.269] (-8668.396) -- 0:07:18
      56500 -- (-8666.794) (-8665.646) [-8667.767] (-8663.554) * (-8662.045) (-8672.037) (-8662.924) [-8669.312] -- 0:07:14
      57000 -- [-8668.454] (-8666.525) (-8663.964) (-8667.648) * (-8667.500) (-8672.352) [-8668.349] (-8666.302) -- 0:07:26
      57500 -- (-8664.116) (-8666.065) (-8661.527) [-8668.250] * (-8667.521) (-8669.800) (-8669.285) [-8668.070] -- 0:07:22
      58000 -- [-8664.320] (-8666.101) (-8667.783) (-8665.572) * (-8675.582) (-8670.211) (-8667.571) [-8662.079] -- 0:07:18
      58500 -- (-8670.001) (-8667.003) (-8664.163) [-8660.971] * (-8669.455) (-8672.462) (-8668.198) [-8667.799] -- 0:07:14
      59000 -- (-8670.255) (-8668.219) (-8663.022) [-8665.181] * (-8668.273) [-8665.193] (-8669.000) (-8666.256) -- 0:07:26
      59500 -- (-8667.669) [-8670.686] (-8665.576) (-8669.829) * [-8667.175] (-8664.615) (-8678.344) (-8666.396) -- 0:07:22
      60000 -- (-8667.345) (-8672.683) [-8666.430] (-8665.567) * [-8664.059] (-8664.984) (-8671.972) (-8666.819) -- 0:07:18

      Average standard deviation of split frequencies: 0.000000

      60500 -- (-8664.733) (-8674.144) [-8666.862] (-8672.068) * [-8665.560] (-8668.013) (-8667.484) (-8669.114) -- 0:07:14
      61000 -- (-8667.850) (-8665.288) (-8667.176) [-8665.252] * (-8664.143) (-8669.731) (-8669.230) [-8667.398] -- 0:07:11
      61500 -- (-8663.684) (-8666.382) (-8668.573) [-8665.916] * (-8663.663) [-8670.613] (-8663.123) (-8663.754) -- 0:07:22
      62000 -- (-8669.051) (-8674.740) [-8668.375] (-8666.339) * (-8662.864) (-8668.695) (-8669.110) [-8664.786] -- 0:07:18
      62500 -- (-8676.692) (-8672.246) (-8661.518) [-8670.598] * (-8666.655) (-8670.258) [-8665.253] (-8670.952) -- 0:07:15
      63000 -- (-8673.971) [-8667.517] (-8665.590) (-8666.467) * (-8677.357) [-8672.714] (-8666.725) (-8665.599) -- 0:07:11
      63500 -- [-8667.784] (-8664.725) (-8668.112) (-8670.708) * [-8673.894] (-8674.494) (-8673.905) (-8670.282) -- 0:07:22
      64000 -- (-8663.908) (-8661.118) [-8664.423] (-8668.182) * (-8670.956) (-8676.877) [-8668.910] (-8671.620) -- 0:07:18
      64500 -- (-8664.520) [-8663.606] (-8660.141) (-8669.436) * [-8663.056] (-8680.857) (-8670.962) (-8665.913) -- 0:07:15
      65000 -- (-8665.055) (-8670.335) (-8667.448) [-8671.686] * (-8659.458) (-8666.639) (-8665.732) [-8669.265] -- 0:07:11

      Average standard deviation of split frequencies: 0.000000

      65500 -- (-8667.320) [-8665.735] (-8668.867) (-8677.267) * (-8659.720) [-8671.516] (-8671.465) (-8668.922) -- 0:07:22
      66000 -- (-8666.093) [-8665.553] (-8666.252) (-8672.855) * (-8672.607) (-8673.082) (-8668.999) [-8672.459] -- 0:07:18
      66500 -- (-8671.977) (-8664.067) (-8668.597) [-8674.835] * (-8667.197) (-8670.855) (-8673.375) [-8671.246] -- 0:07:15
      67000 -- [-8669.888] (-8669.272) (-8669.803) (-8671.573) * (-8666.998) (-8671.577) [-8677.824] (-8675.082) -- 0:07:11
      67500 -- (-8668.179) [-8665.871] (-8671.334) (-8660.724) * (-8668.218) [-8668.776] (-8671.615) (-8669.059) -- 0:07:22
      68000 -- (-8665.572) (-8665.762) (-8664.493) [-8668.992] * (-8668.824) [-8668.029] (-8669.420) (-8667.369) -- 0:07:18
      68500 -- [-8663.800] (-8666.038) (-8669.981) (-8666.497) * (-8664.464) (-8664.252) [-8665.071] (-8672.305) -- 0:07:15
      69000 -- (-8669.110) (-8666.877) [-8670.168] (-8667.228) * (-8672.611) (-8663.138) [-8672.387] (-8669.077) -- 0:07:11
      69500 -- (-8673.911) (-8668.256) [-8668.553] (-8672.900) * (-8668.749) (-8666.777) (-8670.578) [-8668.137] -- 0:07:08
      70000 -- (-8665.474) (-8668.968) [-8667.493] (-8666.113) * (-8671.257) [-8670.900] (-8664.077) (-8667.746) -- 0:07:18

      Average standard deviation of split frequencies: 0.000000

      70500 -- (-8670.148) [-8666.534] (-8668.715) (-8659.049) * (-8666.748) (-8673.769) (-8666.783) [-8661.452] -- 0:07:15
      71000 -- [-8669.350] (-8668.466) (-8668.917) (-8665.587) * (-8669.404) (-8670.594) (-8675.210) [-8665.205] -- 0:07:11
      71500 -- (-8665.282) (-8667.763) (-8670.780) [-8659.961] * [-8665.080] (-8665.720) (-8668.995) (-8660.218) -- 0:07:08
      72000 -- (-8664.200) (-8671.786) (-8668.901) [-8660.312] * (-8664.322) (-8665.995) (-8671.858) [-8660.897] -- 0:07:18
      72500 -- (-8666.876) [-8665.372] (-8666.301) (-8660.950) * (-8665.902) [-8667.638] (-8675.799) (-8663.134) -- 0:07:14
      73000 -- (-8669.493) (-8673.298) (-8664.486) [-8661.654] * [-8670.294] (-8665.448) (-8672.484) (-8664.949) -- 0:07:11
      73500 -- (-8667.212) [-8665.155] (-8664.912) (-8673.216) * (-8667.855) (-8667.317) [-8663.613] (-8662.400) -- 0:07:08
      74000 -- [-8664.913] (-8660.838) (-8661.173) (-8666.739) * (-8670.180) (-8666.625) [-8666.326] (-8669.618) -- 0:07:17
      74500 -- (-8667.321) (-8664.937) (-8665.549) [-8669.427] * (-8665.205) [-8666.201] (-8666.551) (-8671.502) -- 0:07:14
      75000 -- (-8664.820) (-8668.425) [-8666.095] (-8668.527) * (-8664.010) (-8670.084) (-8666.629) [-8666.821] -- 0:07:11

      Average standard deviation of split frequencies: 0.000000

      75500 -- (-8667.799) [-8665.031] (-8669.448) (-8666.792) * (-8666.191) [-8666.895] (-8664.379) (-8664.091) -- 0:07:08
      76000 -- (-8669.358) [-8666.260] (-8665.130) (-8663.401) * (-8660.409) (-8672.734) (-8662.951) [-8665.665] -- 0:07:17
      76500 -- (-8669.248) [-8671.274] (-8673.338) (-8669.995) * (-8664.004) (-8666.133) (-8670.821) [-8661.345] -- 0:07:14
      77000 -- (-8672.033) (-8679.321) (-8670.174) [-8668.422] * (-8667.539) [-8663.500] (-8671.698) (-8665.666) -- 0:07:11
      77500 -- (-8668.617) (-8665.957) [-8666.004] (-8667.674) * (-8673.687) (-8661.575) [-8668.805] (-8668.679) -- 0:07:08
      78000 -- (-8668.365) (-8664.744) (-8671.877) [-8668.536] * (-8666.540) (-8665.362) [-8669.917] (-8666.729) -- 0:07:05
      78500 -- (-8663.376) [-8664.506] (-8669.174) (-8670.690) * (-8667.121) [-8663.482] (-8667.538) (-8665.597) -- 0:07:14
      79000 -- (-8672.297) [-8664.753] (-8675.023) (-8662.477) * [-8660.593] (-8662.982) (-8670.584) (-8664.232) -- 0:07:11
      79500 -- (-8667.523) (-8665.880) (-8671.411) [-8665.407] * [-8663.523] (-8678.028) (-8667.399) (-8661.093) -- 0:07:08
      80000 -- (-8669.018) [-8673.347] (-8669.701) (-8663.438) * (-8668.298) (-8671.189) [-8668.150] (-8662.907) -- 0:07:05

      Average standard deviation of split frequencies: 0.000000

      80500 -- [-8665.981] (-8672.051) (-8673.184) (-8664.065) * (-8665.369) (-8670.367) [-8665.688] (-8665.456) -- 0:07:14
      81000 -- [-8666.982] (-8672.591) (-8665.780) (-8660.648) * [-8665.609] (-8663.661) (-8664.591) (-8665.520) -- 0:07:11
      81500 -- [-8666.800] (-8672.011) (-8666.377) (-8673.251) * (-8669.392) (-8672.221) [-8664.160] (-8666.828) -- 0:07:08
      82000 -- (-8667.795) [-8668.090] (-8661.301) (-8667.989) * (-8666.795) (-8667.396) (-8668.678) [-8667.103] -- 0:07:05
      82500 -- [-8667.404] (-8671.568) (-8672.770) (-8667.122) * (-8674.949) (-8670.700) [-8662.015] (-8660.786) -- 0:07:13
      83000 -- (-8669.203) (-8675.611) (-8667.788) [-8661.721] * (-8671.381) (-8674.791) [-8667.513] (-8667.305) -- 0:07:10
      83500 -- (-8672.427) [-8666.876] (-8664.338) (-8666.212) * (-8672.616) (-8670.517) (-8664.505) [-8662.856] -- 0:07:08
      84000 -- (-8675.030) [-8663.378] (-8664.951) (-8660.981) * (-8675.305) (-8667.216) [-8665.326] (-8666.749) -- 0:07:05
      84500 -- (-8671.