--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Nov 25 17:07:19 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/1/2mit-PD/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -8663.19 -8674.61 2 -8663.09 -8673.22 -------------------------------------- TOTAL -8663.14 -8674.13 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.444184 0.000926 0.387169 0.503074 0.442610 1103.79 1253.32 1.000 r(A<->C){all} 0.071891 0.000114 0.051489 0.092122 0.071508 1195.75 1233.35 1.000 r(A<->G){all} 0.232592 0.000411 0.196026 0.275672 0.232162 774.38 807.73 1.000 r(A<->T){all} 0.100269 0.000218 0.072600 0.129156 0.099682 1255.57 1312.75 1.001 r(C<->G){all} 0.063888 0.000111 0.043729 0.084755 0.063368 1056.29 1114.94 1.000 r(C<->T){all} 0.458501 0.000715 0.404940 0.507943 0.458767 967.32 1106.76 1.001 r(G<->T){all} 0.072860 0.000183 0.047442 0.099632 0.072295 956.79 1033.74 1.000 pi(A){all} 0.291557 0.000053 0.277518 0.305812 0.291638 1166.55 1171.95 1.000 pi(C){all} 0.276841 0.000052 0.261886 0.289597 0.276740 996.76 1104.02 1.000 pi(G){all} 0.238748 0.000047 0.225209 0.251915 0.238610 1111.39 1138.52 1.000 pi(T){all} 0.192854 0.000038 0.181837 0.205375 0.192686 1099.82 1154.78 1.000 alpha{1,2} 0.094555 0.001861 0.002847 0.159969 0.100923 798.89 903.57 1.001 alpha{3} 2.890363 0.825780 1.419002 4.742718 2.747890 1209.37 1250.82 1.000 pinvar{all} 0.216060 0.005125 0.084346 0.351990 0.216533 694.19 788.68 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -8080.18077 Model 2: PositiveSelection -8080.18077 Model 0: one-ratio -8093.256365 Model 3: discrete -8076.033585 Model 7: beta -8076.711505 Model 8: beta&w>1 -8076.711686 Model 0 vs 1 26.151190000000497 Model 2 vs 1 0.0 Model 8 vs 7 3.619999988586642E-4
>C1 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ EAQATATSVEVAAATAATSEKTGIQATSAAQSTAAATTAEREAIATATSS DTTATPTLAAAAAIQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQMPGMP AKTTETPAKNLPSLAQTKATTALPILATRDAATATTEINSDKPTNISGAT KTVATSAAEIATPPAIEVPQTILAGKKSDKMPADKAHETLLKYPTRDTSG QVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVA DADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKGHKKKPSL SIKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQL KAYVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLA HVYRCELPWQRSNRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPA RLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSS SSGSSRSSLHSPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCR TDRVAATDLGGTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWooooooooo ooooooo >C2 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ EAQPTATSVEVAAAAAATSEKTDIHATPAAAPSAQSTAAATTAEREAIAT ATSSDTTATPTLAAAAAMQSAGNIPAQLTTKTLRPTETTSLAQLQRRQQM PGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATATTEINSDKPTNI SGATKTVATSAAEIATPPAIEVPQTILAGKKSDKMPADKAHETLLKYPTR DTSGQVATTPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGT ATVADADSEVLDPSQQHQSAEQEKHQSATDKRQADAINGDTKSPAKSHKK KPSLSIKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAAPEELST FAQLKAYVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVACVLFIVLL AGLAHVYRCELPWQRSNRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNG GDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADKSSS TSSSSSGSSRSSLHSPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNA YGCRTDRVAATDLGGTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWooooo ooooooo >C3 MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK ETQAPATSVEVAEATAAISEKTDTQATSAAAADTAEQSTAAATTAEKEAI PTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLAQ LQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADTATTEIN SDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGKKSDKMPADKAQET LLKYPTRDTSGQVATPPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAE QLLLPGTATVADADADSEVLDSSQQHQSAEQEKHQPATDKRQADAINGDT KSPKSHKKKPSLSIKKMTYTTKHVAKAAEDMAATAKTSQHQHSSVNTPKE STPEELSTFAQLKAFVELKSESKPEHLMDQREENHHNLTGNHPGVMLLVA CVLFIVLLAGLAHVYRCELPWQRSSRSGQSRPHHQRHLNETDDAHSFLHY QGSVNSNGGDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFYSS SLADKSSSTSSSSSGSSRSSLHSPSRDDSYYIEMAPSSPPAAHLPSLPME LLGSRSNVLGCRVDRVAATDLGGTTEAVPSSAATIKSVSSRLMTPSSRRL NIWoooo >C4 MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK EAQATATSVEVAAATAATSEKTDIQGTSAAQSTAAATTAEKETIPTATSS DTTATPTLAAATMQSAGNSLAQLTTKTLRPTETTSLAQLQRRQQMPGMPA KTTETPAKNLPSLAQTKATTALPILATRDAGTATTEINSDNPTSISGATK TAAASAAEIATTPAIEVPQTILAGKKSDKMPADKAQETLLKYPTRDTSGQ IATPPHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQLLLPGTATVAD ADSEVLDSSQQHQSAEQEKHQSATDKRQADAINGDTKAPAKSHKKKPSLS IKKMTYSTKHAAKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLK AYVELKSESKPEHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAH VYRCELPWQRSSRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPAR LQKWHHCTRREAPYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS PGSSRSSLHSNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRA DRVAATDLGGTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooooooooo ooooooo >C5 MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK GADTTAAAAAVATSEKHTAHTTDDTQATSASTQPTTGATSAEKAAIPTAT PTSPTAMQSAGNSVAQLTTKTLRPTETTSLEQLQQRQQMPGMPAKTTATP AKNLPSLAQTKATTAVPILAAPAAATTPAAAATTTTTTAATAINSNKPTN ISGATKTATEMVAAPPAIEVPQTILAGKKSDKMPTDKAHETLLKYPTRDT SGQAAASAAAAATLSHKHATLQLHVKDRHLIGTPLLMHKGDVLLVDAEQL LLPGTATVADADSEVLDSSQQQHQSAEQEKHQSAADKRQAEAINGDSKSS SSSPPKSHKKKPSLSIKKMTYSTKHAVKAVEELQATSKTPQHQHSSVNTP KEASPEELSTFAQLKAYVELKSESKPEHLMDQREENLHNLTGNHPGVMLL VACVLFIVLLAGLAHVYRCELPWQRSNRPGQMRPHHQRHLNDTDDAHSFL HYQGSVNSNGGDPARLQKWHHSTRREAPYSSPLHNLQARELQQQRCQQFY SSSLADKSSSTASSSSLSGSSRSSLHSPSRDDSYYIEMAPSNPPSATLPS LPMELLGSRSNGLGSRTDRVAATDLGGTTAAVPSSATAIKSVSSRLMAPS SRRLGIW CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=5, Len=1198 C1 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS C2 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS C3 MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS C4 MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS C5 MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS ******:*********:.****** **::*** ****** ****** *** C1 RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN C2 RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN C3 RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN C4 RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN C5 LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN *: * *** ************ *:************************* C1 LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG C2 LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG C3 LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG C4 LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG C5 LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG ******:.***:******* ****.*********.:**::********** C1 NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL C2 NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL C3 NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL C4 NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL C5 NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL ***********.*.* ***:********:* *: *.**.**** **:*** C1 AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH C2 AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH C3 AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH C4 AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH C5 AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH *:*:*:****************:****:*:**************:***** C1 NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG C2 NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG C3 NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG C4 NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG C5 NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG **************************:*********************** C1 LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE C2 LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE C3 LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE C4 LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE C5 LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE ***************:*:******************************** C1 DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV C2 DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV C3 DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV C4 DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV C5 DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV ****************:*******.********************.*:** C1 GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL C2 GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL C3 GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL C4 GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL C5 GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL *********** *******.*:*********:****************** C1 RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ C2 RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ C3 RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ C4 RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ C5 RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ ****************.************.***.* * ** ********* C1 FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ C2 FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ C3 FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK C4 FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK C5 FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK **** ***** * ***** * ****: *:*: ***. :****:**: C1 EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA C2 EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA C3 ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA C4 EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET C5 GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA ::..*::. ** : :..*. :.* *.*:.**:**: : C1 IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA C2 IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA C3 IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA C4 IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA C5 IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE *.***.:..** :***** **************** C1 QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- C2 QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- C3 QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT----- C4 QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT----- C5 QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA ***:************ ************ ****:****: * * C1 -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK C2 -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK C3 -------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK C4 -------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK C5 ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK *:* ***::**.*******.: :.:.************* C1 KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR C2 KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR C3 KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR C4 KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR C5 KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR ******:***:************** *:.. ************* C1 HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA C2 HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA C3 HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA C4 HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA C5 HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA **********************************: ****.*** **** C1 EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA C2 EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA C3 EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV C4 EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA C5 EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA ******.*:*****:*****: .:* *.**************:***. C1 AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP C2 AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP C3 AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP C4 AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP C5 VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP .*:.*:: **:**.************: ************:********* C1 EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS C2 EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS C3 EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS C4 EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS C5 EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS ******** . **************:************************ C1 NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE C2 NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE C3 SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE C4 SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE C5 NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE .*.** *********:*****************************.**** C1 APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH C2 APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH C3 APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH C4 APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH C5 APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH ******************************:****:*** .******** C1 SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG C2 SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG C3 SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG C4 SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG C5 SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG * *************.*.:* ************** *.*.********* C1 GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo- C2 GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo----- C3 GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo------------- C4 GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo C5 GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW----------------- *** ******::*********:******.** PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] ns S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 5 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 1157 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 1157 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [26054] Library Relaxation: Multi_proc [72] Relaxation Summary: [26054]--->[24770] UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 OUTPUT RESULTS #### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii #### File Type= MSA Format= html Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html #### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii # Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/2mit-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast [PROGRAM:T-COFFEE] # T-COFFEE Memory Usage: Current= 29.492 Mb, Max= 31.431 Mb # Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) # T-COFFEE is available from http://www.tcoffee.org # Register on: https://groups.google.com/group/tcoffee/ >C1 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo- >C2 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo----- >C3 MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT----- -------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo------------- >C4 MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT----- -------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo >C5 MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW----------------- FORMAT of file /tmp/tmp1506833237826868836aln Not Supported[FATAL:T-COFFEE] >C1 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ EAQATATSVEVAAATAATSEKTG-IQAT------SAAQSTAAATTAEREA IATATSSDTTATPTLAAAAA-----IQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA EQEKHQSATDKRQADAINGDT----KSPAKGHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooooooo- >C2 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ EAQPTATSVEVAAAAAATSEKTD-IHATPAAA--PSAQSTAAATTAEREA IATATSSDTTATPTLAAAAA-----MQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAAT----- -------ATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDPSQQ-HQSA EQEKHQSATDKRQADAINGDT----KSPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIWoooooooooooo----- >C3 MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK ETQAPATSVEVAEATAAISEKTD-TQATSAAAADTAEQSTAAATTAEKEA IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADT----- -------ATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQVATPP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQ-HQSA EQEKHQPATDKRQADAINGDT----KSP-KSHKKKPSLSIKKMTYTTKHV AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSS--SGSSRSSLH SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWoooo------------- >C4 MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK EAQATATSVEVAAATAATSEKTD-IQGTSAA------QSTAAATTAEKET IPTATSSDTTATPTLAAAT------MQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGT----- -------ATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQIATPP-------HKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQ-HQSA EQEKHQSATDKRQADAINGDT----KAPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSS--PGSSRSSLH SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIWooooooooooooooooo >C5 MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK GADTTAAAAAVATSEKHTAHTTDDTQATSAS-----TQPTTGATSAEKAA IPTATPTSPTA--------------MQSAGNSVAQLTTKTLRPTETTSLE QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA ATTTTTTAATAINSNKPTNISGATKTAT---EMVAAPPAIEVPQTILAGK KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADS--EVLDSSQQQHQSA EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW----------------- input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:1198 S:97 BS:1198 # TC_SIMILARITY_MATRIX_FORMAT_01 # SEQ_INDEX C1 0 # SEQ_INDEX C2 1 # SEQ_INDEX C3 2 # SEQ_INDEX C4 3 # SEQ_INDEX C5 4 # PW_SEQ_DISTANCES BOT 0 1 98.35 C1 C2 98.35 TOP 1 0 98.35 C2 C1 98.35 BOT 0 2 93.62 C1 C3 93.62 TOP 2 0 93.62 C3 C1 93.62 BOT 0 3 94.45 C1 C4 94.45 TOP 3 0 94.45 C4 C1 94.45 BOT 0 4 88.82 C1 C5 88.82 TOP 4 0 88.82 C5 C1 88.82 BOT 1 2 93.73 C2 C3 93.73 TOP 2 1 93.73 C3 C2 93.73 BOT 1 3 94.62 C2 C4 94.62 TOP 3 1 94.62 C4 C2 94.62 BOT 1 4 88.85 C2 C5 88.85 TOP 4 1 88.85 C5 C2 88.85 BOT 2 3 93.53 C3 C4 93.53 TOP 3 2 93.53 C4 C3 93.53 BOT 2 4 87.25 C3 C5 87.25 TOP 4 2 87.25 C5 C3 87.25 BOT 3 4 86.80 C4 C5 86.80 TOP 4 3 86.80 C5 C4 86.80 AVG 0 C1 * 93.81 AVG 1 C2 * 93.89 AVG 2 C3 * 92.03 AVG 3 C4 * 92.35 AVG 4 C5 * 87.93 TOT TOT * 92.00 CLUSTAL W (1.83) multiple sequence alignment C1 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTTCTCCT C2 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCCT C3 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT C4 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT C5 ATGGTGAAAATTGTGAACCGACACTGTGATCTAGGCCTGGCCCTACTCCT *********** *******.************************ *** * C1 GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA C2 GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGTCA C3 GGTCTGGACGTGGCTAACAAGGCTGGTGGTGGCGACCCATCTGGTCGACA C4 TGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA C5 GGCCTGGACATGGCTAACAAGGCAGGTGGTTTCGGCCCATCTGGTCGATA * ******.*************:****** **.************: * C1 TCCCCACCTCATCACGCCTGGCCGCTGAACGGGAGGAGCAGCAGTTGTCC C2 TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGTTGTCC C3 TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGCTATCC C4 TCCCCACCTCATCACGCCTGGCCGCCGAGCGGGAGGAGCTGCAGTTATCC C5 TTCCCACCTCATCTCGCCAGGCTGCCGAACGGGAGGAGCAGCAGTTATCC * ***********:****:*** ** **.**********:**** *.*** C1 CGGCAGGACGTAGGACGGCTCAGCTACCAGAGTATCCATCGTATGCTGAG C2 CGGCAGGACGTGGGACGGCTCAGCTACCAAAGTATCCATCGCATGTTGAG C3 CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG C4 CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG C5 CTGCAGAATGGCGGTGGTCTCAGCTACCCGAGCATTCATCGAATGCTGAG * ****.* * **: * **********..** ** ***** *** **** C1 GGACGAAAACGAACCGGATAGCTTTCGGGGGGAATTGCGATACCAACAGA C2 GGACGAAAACGAACCTGCCAGCTTTCGGGGGGAATTGCGATACCAACAGA C3 GGACGAAAACGAACCGGCCAGCTTTAGGGGGGAATTGCGATACCAACAGA C4 GGACGAAAACGAACCGGCCAGCATTCGGGGGGAATTGCGATACCAACAGA C5 GGACGAAAACGAACCGGCCAGCTTTCGAGGGGAATTACGATACCAACAGA *************** *. ***:**.*.********.************* C1 AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT C2 AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT C3 AACGCCACAAAAGGGAGCTGGAGCTCAATGCTCCGGCAAACAAGCTGAAT C4 AACGCCACAAAAGGGAGCTGGAGCTGAATGCTCCGGCAAACAAACTTAAT C5 AACGTCACAAAAGAGAGTTGGAGCTGAATGCTCCAGCCAACAAGCTTAAT **** ********.*** ******* ***** **.**.*****.** *** C1 CTCACCCACCGCGATTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA C2 CTCACCCACCGCGACTTAAGGACATTCAATAGCACTGGCGGTCAGTGGAA C3 CTCACCCACCGCGACTTAAAAACATTCAATAGCACTGGTGGTCAGTGGAA C4 CTCACCCACCGCGACTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA C5 CTCACCCACCGCGACTTGAGGAACTTTAATAGCAGTGGTGGTCAGTGGAA ************** **.*..*..** ******* *** *********** C1 GGGCGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG C2 GGGGGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG C3 GGGCGACTTTCAGGTCATCACCGCCATGGATCTGAGCAGCAATCAACTGG C4 GGGCGACTGTCAGGTGATCACAGCCATGGATCTGAGCAGCAATCAACTGG C5 GGGTGACTTTCAGGTGATCACTGGTATGGATCTGAGTAGTAATCAACTGG *** **** ***.** ***** * *********** ** ********** C1 AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGA C2 AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGT C3 AGAACGTCAGCTTGGACAACTTCAATCAACTAAGGCAGCTGGACTTGGGC C4 AGAGCATCAGCTTGGACAAATTCAATCAACTAAGGCAGCTGGACTTGGGC C5 AAAGTCTCAGTTTGAACAACTTCAATCAGCTGAGGCAACTGGATTTGGGT *.*. **** ***.****.********.**.*****.***** ***** C1 AATAACTCCCTGGAGGTAATACCCTTGAGTTTGGCAGACACCAATATGTC C2 AACAACTCCCTGGAGGTTATACCCTTAAGTTTGGCAGACACCAATATGTC C3 AATAACTCCCTGGAGGTTATACCCCTGAGTTTGGTCGACAACAATAAGTC C4 AATAACTCCCTGGAGGTTATACCCCTGAGCTTGGCCGACAACAATAAGTC C5 AACAACTCTTTGGAGGTTATACCTCTGAGCTTAGCTGATACCAACAAATC ** ***** *******:***** *.** **.* ** *.*** *:.** C1 ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT C2 ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT C3 ACTACCCCTTGTAACGCTCGATCTATCCTGCAACGAATTCAGACAAATTT C4 ACTACCCTTTGTAACGCTCGATCTATCCTGTAATAAATTCTGCCAAATGT C5 ACTTCCGTTCGTAACACTCGATCTTTCCTGCAACAAATTCAGCCAACTTT ***:** * **.**.********:***** ** .*****:*.***.* * C1 CTACGAGCTTTTTTGCCCAGCGATTGCCTCAGTTGAAAAATCTGAATCTG C2 CTACGAGCTTTTTTGCCCAGAGATTGCCTCAGTTGAAAAATCTGAACCTG C3 CTACGAACTTTTTTGCCCAGCGATTGCCTCAGTTGAAACATCTGAACTTG C4 CTACGAGCTTTTTTGCCCAGCGATTGCCTCTGTTGAAACATCTTAACTTG C5 ACACCAACTTCTTTGTCCAGCGATTGCCTGAACTTAAGAACCTCAACTTG . ** *.*** **** ****.******** :. * **..* ** ** ** C1 GCTCACAATGAATTGCTAAATATTTCCCGGGAATCATTCTATAATTTATT C2 GCTCACAATGAATTGCTAAACATTTCCCGGGAATCATTCTACAATTTGTT C3 GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT C4 GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT C5 GCTTACAATCAATTGTTAAACATTTCAAGGGAATCATTCTACAATTTGTT *** ***** *.*** **** ***** .*******.***** *****.** C1 GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT C2 GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT C3 GGAACTACAAACGTTAATTCTCAGTCACAACAACATCTCGGATATAGACT C4 GGAACTACAAACGTTAGTTCTCAGTCACAACAAAATCTCGGATATAGACT C5 GGAACTACAAACATTAATACTCAGTCACAACAACATCACGGATATAGACT ************.***.*:**************.***:*******:**** C1 ATGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT C2 ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT C3 ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT C4 ATGAAACATTTTTGGCGCTACCGAATCTGCAATATCTGGATTTATCCCAT C5 ACGAAACCTTTTTGGCTCTGCCGAATCTGCAACATCTGGACTTATCCCAC * *****.******** **.************ ******* ******** C1 AACCGCTTGAGTGGATCCGCTATTCGTGCTCTGCAAGGAATTCCGGATTT C2 AACCGCTTGAGTGGATCCGCAATTCGTGCTCTGCAGGGAATTCCGGATTT C3 AACCGCTTGAGCGGATCCGCTATCAGAGCTCTGCAGGGAATTCCGGATTT C4 AACCGCTTGAGTGGTTCCGCCATCCGAGCTCTGCAGGGAATTCCGGATTT C5 AACCGCTTGAGTGGCTCTGCAATACGAGCTTTGCAGGGAATTCCGGATTT *********** ** ** ** ** .*:*** ****.************** C1 GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG C2 GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG C3 GGTCAGCCTTTCAATCGCTTACAATCCAGAAGTGGGAGTGGCGATGCAGG C4 GGTCAGCCTTTCTATCGCTTACAATCCTGATGTGGGAGTTGCGATGCAGG C5 GGTCAGCCTTTCCATTGCCTACAATCCGGAAGTGGGAGTGGCCATGCAGG ************ ** ** ******** **:******** ** ******* C1 AGTTCGTTGCTTCCTGGAGCCTAAAGGAGTTGGATGCCAGTGGCACTGGA C2 AGTTCGTCGCTTCCTGGAGCCTCAAAGAGTTGGATGCCAGTGGCACTGGA C3 AGTTCGTCGCATCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGCACTGGA C4 AGTTCGTCGCGTCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGTACTGGA C5 AGTTCGTCGCCTCCTGGAGTCTCAAGGAGTTGGATGCTAGTGGCACTGGA ******* ** ******** **.**.*********** ***** ****** C1 TTGTGTCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT C2 TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCTGTGAGGACTCTCAAGTT C3 TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT C4 TTGTGCCAGGTGCCTGCAGCTTTAGCCCAATCCGTGAGGACTCTCAGGTT C5 TTGTGCCAGGTGCCAGCAGCTTTAGCCCAATCTGTGAGGACTCTTAAGTT ***** ********:****** ********** *********** *.*** C1 GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC C2 GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC C3 GTCCGACAATTGGCTCAAGGCAATTAATTGCGGCGACATGGACAGCTACC C4 GGCCGACAACTGGCTTAAGGCAATTAATTGCGGTGACATGGACAGTTATC C5 ATCCGACAACTGGTTAAAGGCCATCAACTGCGGCGACATGGACAGCTATC . ******* *** * *****.** ** ***** *********** ** * C1 CGCTGCTGCAGTATCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG C2 CGCTCCTGCAGTACCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG C3 CACTGCTGCAGTACCTTGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG C4 CACTGCTGCAGTACCTCGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG C5 CCCTGCTGCAGTACCTTGATCTCTCTCACTCCCGGATTGCCCAAGTGGAA * ** ******** ** ******** ** ***** **************. C1 GACGATGCCTTGGGACGATTGGAGCTCCTCGAATCCCTTTTCCTAGACCG C2 GACGATGCTCTGGGACGATTGGAGCTCCTCGAATCACTTTTCCTCGACCA C3 GACGATGCCCTGGGACGACTGGAGCTCCTCGAGTCCCTTTTCCTCGACCA C4 GACGATGCTCTGGGACGACTGGAGCTCCTCGAATCCCTTTTCCTGGACCA C5 GACGATGCCCTGGGACGTTTGGAGCTCCTTGAATCTCTTTTCTTGGACCA ******** *******: ********** **.** ****** * ****. C1 TAATCTACTGATGCGAGTGCCAAGTAGTCTGCCGCCATCGCTGGAACACT C2 CAATCTTCTGATGCGAGTGCCCAGCAGTCTGCCACCATCGCTGGAACACT C3 CAATCTTCTAATGCGAGTGCCCAGCAGCCTGCCGCCATCGCTGGAACACC C4 CAATCTTCTGATGCGAGTGCCCAGTAGCCTGCCGCCATCGCTGGAACACT C5 CAATCTTCTAATGCGAGTGCCAAACAGTCTACCACCATCACTGGAACACC *****:**.***********.*. ** **.**.*****.********* C1 TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCACAGGCTTTTGTG C2 TATTTCTGCAGCACAATCAGATAATGGAACTTCCGCCACAGGCTTTTGTG C3 TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCTCAGGCTTTTGTG C4 TATTTCTGCAGCACAATCAGATAATGGAGCTCCCGGCGCAGGCTTTTGTG C5 TATTCCTACAGCACAACCAGATAATGGAACTGCCACCTCAGACTTTCGTT **** **.******** ***********.** **. * ***.**** ** C1 GGATTGGTCAATCTACAGACTCTGGACTTATCCAACAATCGATTGATCTT C2 GGATTGGTCAATCTACAGACTCTGGACTTATCTAACAATCGATTGATCTT C3 GGATTGGTCAATCTGCAGACTCTGGACTTATCCAGCAATCGATTGATCTT C4 GGATTGGTCAATCTGCAGACTCTGGACTTATCCAACAACCGATTGATTTT C5 GGCCTGGTCAACCTGCAGACCCTGGACTTGTCCCACAATCGTTTGATCTT **. ******* **.***** ********.** ..*** **:***** ** C1 CCTGCCCCCGCTATCGCTCCCCAAATTGCTCACCCTGAATCTGGAATCGT C2 CCTGCCCCCGCTATCACTGCCCAAATTGCTCACCCTGAATCTGCAATCGT C3 CCTGCCCCCGCTTTCGCTGCCCAAATTGCTCACCCTGAATCTGCAATCGT C4 CCTGCCCCCACTTTCGCTGCCCAAATTGCTAACCCTGAATCTGCAATCGT C5 TCTGCCCGCTCTTGCACTGCCCAAATTGCTTACCCTAAATCTGCAATCTT ****** * **: *.** *********** *****.****** **** * C1 CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA C2 CAGGGGTGGAGAGTGTTAGTCAATCGATAGTGCACACACTGCCACAGTTA C3 CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA C4 CAGGAGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA C5 CAGGTGTAGAGAGTGTCAGCCAATCGATAGTGCACACATTGCCCCAGTTG **** **.***** ** ** ****************** ****.*****. C1 AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG C2 AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGAG C3 AGGGATCTTTTACTAGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG C4 AGGGATCTTTTGCTAGAGGACAACCCTATCAAGTGCAGCGATTTGCTGGG C5 AGGGATCTCTTACTGGAGGACAATCCCATAAAATGCAGCGATTTGCTGGG ******** *.**.******** ** ** **.***************.* C1 CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGCGGGTCAATCGA C2 CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA C3 CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA C4 CATTGCCGAATGGGCCAGTCCATGCAGGTCAGTGGATGTGGGTCAATCGA C5 CATTGCCGAGTGGGCCAGCCCTTGCAGGTCAGTGGATGTGGGTCAGTCGA *********.******** **:**************** ******.**** C1 ATGGGGCAAGTGTAAGTGGGCGCGTGGATTTGAAGACGGAGTATCTGCAA C2 ATGGGGCAAGTGTGAGTGGGCGCGTGGATCTAAAAACGGAGTATCTGCAG C3 GTGGGGCAAGTGTGAGTGGGCGGGTGGACTTGAAGACGGAGTATCTGCAG C4 ATGGGCCAAGCGTGAGTGGGCGGGTGGATTTGAAGACGGAGTATCTGCAG C5 ATGGGAGAAGTCCAAGTGGGTGGGTGGACCTCAAGACGGAGTATCTGCAA .**** *** .****** * ***** * **.**************. C1 TTCCACAATTTTTACGAAAACTTCAGCAGCCGAGAGTGTGGTATAAGAAA C2 TTCCACAATTTCTACGAAAACTTCAGCAGCCGTGAGTGTGGTATAAGAAA C3 TTCCACAATTTTTACGTAAACTTCAGTAGCCGAGGGTGTGTCATAAGAAA C4 TTCCACAATTTTAACGAAAACTTCAGTAGCCGAGAGTGTGGTATAAGAAA C5 TTTCACAATTTTTACGACAACTTCAGTAGCCGAGAGTGTGGAGCCAGGAA ** ******** :***:.******** *****:*.***** . .**.** C1 ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTAACAAGGGCATCAG C2 ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTGACAAGGGCAGCAG C3 ACCGGAAAATGACACAAAGCTGCCTTCTTGCAGCCTGACAAGGGCAGCAG C4 ACCGGAAAATTACACAATGCCGCCTTCTTGCAGCGTGATAAGGGCAGCAG C5 ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTCACAAGTGCCACAG ********** ******:** ************* * * *** **. *** C1 CTACATTAACAACAACACCCAGAAGTATGTCAAAAGTTGAAAAGTCACAA C2 CAACATTAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCACAA C3 CAGCATCAACAACAACACCCGGAAGTATGTCAAAAGTTAAAAAGTCAAAA C4 CAACATCAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCAAAA C5 CAGCATTAACAACAACGTCGAGAACTATGTCAAAAGTTAAAAAGTCAAAA *:.*** *********. * .*** *************.********.** C1 GAAGCACAAGCAACAGCAACATCAGTGGAAGTAGCAGCGGCAACAGCAGC C2 GAAGCACAACCAACAGCAACATCAGTGGAAGTAGCAGCGGCCGCAGCAGC C3 GAAACACAAGCACCAGCAACATCAGTGGAAGTAGCGGAGGCAACAGCAGC C4 GAAGCACAGGCAACAGCAACATCAGTGGAAGTAGCGGCGGCAACAGCAGC C5 GGAGCAGACACGACAGCAGCAGCAGCAGCAGTGGCAACATCAGAAAAACA *.*.** * *..*****.** *** .*.***.**.... *...*..* . C1 AACATCAGAAAAAACAGGC---ATACAAGCAACA---------------- C2 AACATCAGAAAAAACAGAC---ATACACGCAACACCAGCAGCAGCA---- C3 AATATCAGAAAAAACAGAC---ACCCAAGCAACATCAGCTGCAGCAGCAG C4 AACATCAGAAAAAACAGAC---ATACAAGGAACATCAGCTGCA------- C5 CACAGCACATACAACAGACGACACACAGGCAACGTCAGCATCA------- .* * ** *:*.*****.* * .** * ***. C1 --TCAGCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCA C2 --CCATCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCG C3 ATACAGCAGAGCAGTCGACTGCAGCAGCAACAACAGCGGAAAAAGAAGCA C4 -----------CAGTCCACTGCAGCAGCCACAACAGCGGAAAAAGAAACA C5 --------ACTCAGCCAACTACAGGAGCAACATCAGCGGAAAAAGCAGCA *** * ***.*.* .**.***:****.****.**.*.*. C1 ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC C2 ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC C3 ATCCCAACAGCAACATCAAGCGACACCACAGCAACACCAGCACTCGCAGC C4 ATCCCAACAGCAACATCGAGCGACACCACAGCAACACCAACACTCGCAGC C5 ATTCCAACAGCAACACCAACTTCACCAACAGCA----------------- ** *********** *.* ...*.****** C1 AGCAGCAGCA---------------ATACAATCAGCTGGCAACATCCCTG C2 AGCAGCAGCA---------------ATGCAATCAGCTGGCAACATCCCTG C3 AGCAGCAGCAGCAGCAGCAGCAGCAATGCAATCAGCTGGCAACAGCCTTG C4 AGCAACA------------------ATGCAATCAGCTGGCAACAGCCTCG C5 -------------------------ATGCAATCAGCTGGCAACAGCGTTG **.**************** * * C1 CCCAGTTAACCACAAAAACGTTGCGGCCCACAGAAACAACTTCGTTAGCG C2 CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG C3 CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG C4 CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG C5 CCCAGTTAACCACAAAAACTTTGCGGCCAACAGAAACAACTTCGTTAGAG ******************* ********.*******************.* C1 CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA C2 CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA C3 CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA C4 CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA C5 CAACTGCAGCAGCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGC **********. *************************************. C1 AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG C2 AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG C3 AACGCCAGCAAAGAACCTGCCAAGTTTAGCCCAGACAATGGCAACAACAG C4 AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG C5 CACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG .**************************.**********:*********** C1 CGCTTCCCATTTTGGCAACACGAGATGCTGCCACA--------------- C2 CGCTTCCCATTTTGGCAACACGAGATGCTGCTACA--------------- C3 CGCTTCCCATTTTGGCAACACGAGATGCCGACACG--------------- C4 CGCTTCCCATTTTGGCAACACGAGATGCCGGCACA--------------- C5 CGGTTCCCATTTTGGCAGCCCCAGCAGCAGCAACAACACCAGCAGCTGCA ** **************.*.* **.:** * **. C1 ---------------------GCAACAACGGAAATAAATTCCGACAAGCC C2 ---------------------GCAACAACGGAAATAAATTCCGACAAGCC C3 ---------------------GCAACAACAGAAATAAATTCCGACAAGCC C4 ---------------------GCAACAACAGAAATAAATTCCGACAACCC C5 GCAACAACAACAACAACAACAGCAGCAACAGCAATAAATTCCAACAAGCC ***.****.*.**********.**** ** C1 AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA C2 AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA C3 AACGAACATTAGCGGTGCCACAAAAACAGCAGCAACATCAGCTGCTGAAA C4 AACGAGCATTAGCGGTGCCACAAAAACAGCAGCAGCATCAGCCGCTGAAA C5 AACGAACATTAGCGGTGCCACAAAAACAGCAACA---------GAAATGG *****.*********************** *.** *.:.:.. C1 TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA C2 TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA C3 TACCAACAACACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA C4 TAGCAACAACACCAGCAATTGAAGTGCCGCAAACCATTTTGGCCGGCAAA C5 TGGCAGCACCACCAGCAATTGAAGTGCCACAAACAATTTTGGCCGGAAAA *. **.**.*******************.*****.***********.*** C1 AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA C2 AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA C3 AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA C4 AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA C5 AAATCTGACAAAATGCCAACCGATAAGGCACACGAGACTTTATTAAAATA ******************.************* ***************** C1 CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA---------- C2 CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA---------- C3 CCCAACAAGGGACACATCCGGTCAAGTTGCAACACCGCCA---------- C4 CCCAACAAGGGACACGTCTGGTCAAATTGCAACACCACCA---------- C5 CCCAACAAGGGACACATCCGGTCAAGCAGCAGCATCAGCAGCAGCAGCCG ***************.** ******. :***.** *. ** C1 -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA C2 -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA C3 -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA C4 -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA C5 CAACACTGTCACACAAACATGCAACATTGCAGCTGCACGTTAAGGATCGA *************** *********************** C1 CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTATTGGT C2 CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT C3 CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTCCTGGT C4 CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT C5 CATCTAATTGGCACACCGCTTCTGATGCACAAGGGCGATGTCCTTTTGGT ******************** *********************** **** C1 GGATGCCGAGCAGTTGTTGCTGCCTGGTACGGCCACCGTGGCGGATGCGG C2 GGATGCCGAACAGCTGCTGCTGCCTGGTACGGCCACCGTGGCAGATGCGG C3 GGACGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG C4 GGATGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG C5 GGATGCCGAGCAGTTGTTGCTGCCTGGAACGGCAACCGTGGCGGATGCGG *** *****.*** ** **** *****:*****.********.******* C1 ATTCG------GAAGTTCTGGACCCGAGCCAACAA---CATCAGTCAGCG C2 ATTCG------GAAGTCCTGGACCCGAGCCAACAA---CATCAGTCAGCG C3 ATGCGGATTCGGAAGTTCTGGACTCGAGCCAACAA---CATCAGTCAGCG C4 ATTCG------GAAGTTCTGGACTCCAGCCAACAA---CATCAGTCAGCG C5 ATTCG------GAAGTCTTGGACTCGAGCCAACAACAACATCAGTCGGCG ** ** ***** ***** * ********* ********.*** C1 GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGGCAAGCGGATGCAAT C2 GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT C3 GAGCAGGAAAAGCACCAGCCAGCGACTGATAAGCGACAAGCGGATGCAAT C4 GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT C5 GAGCAGGAAAAGCACCAGTCAGCGGCTGATAAGCGACAAGCGGAAGCCAT ****************** *****.**********.********:**.** C1 AAACGGCGACACG------------AAGTCGCCGGCGAAAGGCCACAAAA C2 AAACGGCGACACA------------AAGTCGCCGGCGAAAAGCCACAAAA C3 AAACGGCGACACA------------AAGTCGCCG---AAAAGCCACAAGA C4 AAACGGCGACACA------------AAGGCGCCGGCGAAAAGCCACAAAA C5 AAATGGCGACTCAAAGTCGTCGTCGTCGTCGCCACCAAAAAGTCACAAAA *** ******:*. :.* ****. ***.* *****.* C1 AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG C2 AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG C3 AGAAACCATCGCTGAGCATTAAGAAGATGACCTACACTACCAAACATGTG C4 AGAAACCATCGCTGAGCATCAAAAAGATGACCTACAGTACCAAGCATGCG C5 AGAAGCCATCGCTGAGTATCAAGAAGATGACCTACAGTACCAAACATGCA ****.*********** ** **.************* ******.** * . C1 GCAAAAACCGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA C2 GCGAAAACAGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA C3 GCAAAAGCCGCGGAGGACATGGCAGCCACCGCGAAGACATCGCAACATCA C4 GCAAAAACCGTGGAGGACATGGCAGCTACCTCGAAGACACCGCAGCACCA C5 GTAAAAGCCGTTGAGGAACTACAAGCCACCTCCAAAACACCCCAGCACCA * .***.*.* ***** .*. .*** *** * **.*** * **.** ** C1 ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGTTGAGCA C2 ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGCTGAGCA C3 ACATAGCAGTGTGAACACACCCAAGGAGTCTACTCCCGAGGAGCTGAGCA C4 ACATAGCAGTGTGAACACACCCAAGGAGGCTATTCCCGAGGAGCTGAGCA C5 ACACAGCAGTGTCAACACACCCAAAGAGGCTTCGCCGGAGGAACTCAGTA *** ******** ***********.*** ** ** *****. * ** * C1 CCTTTGCGCAGCTTAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG C2 CCTTTGCGCAGCTCAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG C3 CCTTTGCCCAGCTAAAAGCCTTCGTAGAGCTAAAGAGCGAATCGAAACCG C4 CCTTTGCCCAGCTAAAAGCATATGTAGAGCTAAAGAGCGAATCGAAACCG C5 CTTTCGCCCAGCTAAAGGCCTATGTGGAACTAAAAAGCGAATCGAAACCA * ** ** ***** **.**.*: **.**.*****.**************. C1 GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA C2 GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA C3 GAACACCTAATGGACCAGCGAGAGGAAAACCATCACAATCTCACAGGAAA C4 GAACACCTAATGGATCAGCGGGAGGGAACCCATCACAATCTTACAGGAAA C5 GAACATTTAATGGACCAGCGAGAGGAAAACCTTCACAATCTTACAGGAAA ***** ******* *****.****.**.**:*** ***** ******** C1 TCATCCAGGAGTCATGCTCCTGGTGGCCTGCGTTTTGTTCATCGTCCTGC C2 TCATCCCGGAGTCATGCTCCTTGTGGCCTGCGTTTTGTTCATCGTCCTGC C3 TCATCCCGGGGTTATGCTTCTGGTAGCCTGCGTTTTGTTCATCGTGCTGC C4 TCATCCCGGTGTTATGCTCCTGGTGTCCTGCGTTTTGTTTATCGTGCTGC C5 TCATCCTGGAGTAATGTTGCTGGTAGCCTGCGTATTATTCATCGTATTGC ****** ** ** *** * ** **. *******:**.** ***** *** C1 TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC C2 TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC C3 TAGCCGGTCTGGCCCACGTCTATCGCTGTGAATTGCCCTGGCAGAGGAGC C4 TTGCCGGTCTGGCCCACGTCTACCGCTGTGAATTGCCTTGGCAGAGGAGC C5 TAGCAGGATTGGCTCATGTCTATCGCTGTGAATTGCCCTGGCAGAGAAGC * **.**: **** ** ***** ************** *****.**.*** C1 AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGACACCTAAACGAAAC C2 AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGGCATCTAAACGAAAC C3 AGCCGCTCCGGACAATCGCGACCGCATCATCAAAGGCATCTGAACGAAAC C4 AGCCGTTCTGGACAATCACGACCGCATCATCAAAGGCATCTAAACGAAAC C5 AATCGACCTGGACAGATGCGCCCGCATCATCAAAGGCATCTAAACGACAC *. ** * **:**.: .**.**************.** **.*****.** C1 CGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG C2 CGATGATGCGCATAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG C3 GGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG C4 GGATGACGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAATTCCAATG C5 CGATGATGCCCATAGTTTTCTGCACTATCAGGGCTCTGTGAATTCCAATG ***** ** ** ** ** **************.******** ******* C1 GCGGTGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA C2 GCGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA C3 GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGCGAGAA C4 GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACTGCACCCGGAGAGAA C5 GAGGAGATCCCGCCCGTTTACAAAAGTGGCATCATAGCACTCGGAGAGAA * **:***** ** ** *.*********** ** :**** ***.***** C1 GCACCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGGGAACTGCAACA C2 GCACCCTACAGCTCCCCGCTCCACAATCTGCAAGCGCGGGAACTGCAACA C3 GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA C4 GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA C5 GCTCCTTATAGTTCTCCACTTCACAATCTGCAAGCTCGCGAGTTGCAACA **:** ** ** ** **.** ********.***** ** **. ******* C1 GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTGGCGGACAAGAGCTCCT C2 GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTAGCGGACAAGAGCTCCT C3 GCAGCGCTGCCAGCAATTCTACAGCTCCTCGCTGGCGGACAAGAGCTCCT C4 GCAACGCTGCCAGCAATTCTACAGCTCCTCTCTGGCGGACAGAAGCTCCT C5 GCAACGTTGCCAGCAATTCTATAGCTCATCTCTGGCGGACAAGAGCTCCT ***.** ************** *****.** **.*******..******* C1 CCACCTCGTCTTCCTCG------TCGGGAAGCAGTCGCAGTAGCCTGCAC C2 CCACCTCGTCATCCTCA------TCGGGAAGCAGTCGCAGTAGCCTGCAC C3 CCACCTCGTCATCCTCG------TCGGGAAGCAGTCGCAGCAGCCTGCAC C4 CCACCTCGTCTTCCTCG------CCGGGAAGCAGTCGCAGTAGCCTGCAC C5 CCACTGCCTCCTCGTCTTCCTTATCGGGAAGCAGCCGCAGTAGCCTGCAT **** * ** ** ** ********** ***** ******** C1 TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCGCCCAGTAGTCC C2 TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCCCCCAGTAGTCC C3 TCGCCCAGCAGAGACGACAGCTACTACATAGAGATGGCGCCCAGTAGTCC C4 TCGAACAGCAGGGATGACAGCTACTATATAGAGATGGCACCCAGTAGTCC C5 TCTCCCAGTAGAGATGATAGCTACTACATAGAGATGGCTCCCAGTAATCC ** ..*** **.** ** ******** *********** *******.*** C1 ACCAGCAGCCAACCTGCCCAGTTTGCCCATGGAACTTTTGGGCAGCCGGA C2 AGCAGCAGCCAACCTGCCAAGTTTGCCCATGGAACTCTTGGGCAGCAGGA C3 ACCAGCAGCCCACCTGCCCAGTTTGCCCATGGAACTCTTGGGCAGCAGGA C4 ACCAGCAGCCAACCTGCCTAGTTTGCCCATGGAACTCTTGGGCAGCAGGA C5 ACCATCCGCCACCCTGCCTAGTTTACCCATGGAACTGTTGGGCAGCAGGA * ** *.***..****** *****.*********** *********.*** C1 GTAATGCCCTCGGATGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC C2 GTAATGCCTACGGTTGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC C3 GCAATGTCCTCGGTTGCCGGGTGGACCGAGTGGCTGCCACCGATCTGGGC C4 GCAACGCCCTTGGCTGCCGGGCGGACCGAGTGGCAGCCACCGATCTGGGC C5 GTAATGGCCTAGGAAGCCGAACAGATCGAGTGGCTGCCACCGATCTGGGC * ** * * : ** :****.. .** ********:*************** C1 GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG C2 GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG C3 GGTACGACAGAGGCGGTACCTTCCTCGGCGGCGACCATCAAGTCGGTCAG C4 GGTACGACAGAGGCGGTACCTTCGTCGGCGGCGACCATCAAATCCGTGAG C5 GGAACGACAGCAGCGGTACCTTCTTCAGCGACAGCCATCAAGTCTGTTAG **:*******..******** ** **.***.*..*******.** ** ** C1 CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- C2 CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- C3 CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- C4 CAGCAGACTGATGACGCCCAGTTCGCGCAGGCTGAACATCTGG------- C5 CAGCAGACTAATGGCTCCAAGTTCAAGGAGGTTGGGAATCTGG------- *********.***.* **.*****..* *** **...****** C1 -------------------------------------------- C2 -------------------------------------------- C3 -------------------------------------------- C4 -------------------------------------------- C5 -------------------------------------------- >C1 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTTCTCCT GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA TCCCCACCTCATCACGCCTGGCCGCTGAACGGGAGGAGCAGCAGTTGTCC CGGCAGGACGTAGGACGGCTCAGCTACCAGAGTATCCATCGTATGCTGAG GGACGAAAACGAACCGGATAGCTTTCGGGGGGAATTGCGATACCAACAGA AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT CTCACCCACCGCGATTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA GGGCGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGA AATAACTCCCTGGAGGTAATACCCTTGAGTTTGGCAGACACCAATATGTC ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT CTACGAGCTTTTTTGCCCAGCGATTGCCTCAGTTGAAAAATCTGAATCTG GCTCACAATGAATTGCTAAATATTTCCCGGGAATCATTCTATAATTTATT GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT ATGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT AACCGCTTGAGTGGATCCGCTATTCGTGCTCTGCAAGGAATTCCGGATTT GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG AGTTCGTTGCTTCCTGGAGCCTAAAGGAGTTGGATGCCAGTGGCACTGGA TTGTGTCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC CGCTGCTGCAGTATCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG GACGATGCCTTGGGACGATTGGAGCTCCTCGAATCCCTTTTCCTAGACCG TAATCTACTGATGCGAGTGCCAAGTAGTCTGCCGCCATCGCTGGAACACT TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCACAGGCTTTTGTG GGATTGGTCAATCTACAGACTCTGGACTTATCCAACAATCGATTGATCTT CCTGCCCCCGCTATCGCTCCCCAAATTGCTCACCCTGAATCTGGAATCGT CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGCGGGTCAATCGA ATGGGGCAAGTGTAAGTGGGCGCGTGGATTTGAAGACGGAGTATCTGCAA TTCCACAATTTTTACGAAAACTTCAGCAGCCGAGAGTGTGGTATAAGAAA ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTAACAAGGGCATCAG CTACATTAACAACAACACCCAGAAGTATGTCAAAAGTTGAAAAGTCACAA GAAGCACAAGCAACAGCAACATCAGTGGAAGTAGCAGCGGCAACAGCAGC AACATCAGAAAAAACAGGC---ATACAAGCAACA---------------- --TCAGCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCA ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC AGCAGCAGCA---------------ATACAATCAGCTGGCAACATCCCTG CCCAGTTAACCACAAAAACGTTGCGGCCCACAGAAACAACTTCGTTAGCG CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG CGCTTCCCATTTTGGCAACACGAGATGCTGCCACA--------------- ---------------------GCAACAACGGAAATAAATTCCGACAAGCC AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA---------- -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTATTGGT GGATGCCGAGCAGTTGTTGCTGCCTGGTACGGCCACCGTGGCGGATGCGG ATTCG------GAAGTTCTGGACCCGAGCCAACAA---CATCAGTCAGCG GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGGCAAGCGGATGCAAT AAACGGCGACACG------------AAGTCGCCGGCGAAAGGCCACAAAA AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG GCAAAAACCGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGTTGAGCA CCTTTGCGCAGCTTAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA TCATCCAGGAGTCATGCTCCTGGTGGCCTGCGTTTTGTTCATCGTCCTGC TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGACACCTAAACGAAAC CGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG GCGGTGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA GCACCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGGGAACTGCAACA GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTGGCGGACAAGAGCTCCT CCACCTCGTCTTCCTCG------TCGGGAAGCAGTCGCAGTAGCCTGCAC TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCGCCCAGTAGTCC ACCAGCAGCCAACCTGCCCAGTTTGCCCATGGAACTTTTGGGCAGCCGGA GTAATGCCCTCGGATGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- -------------------------------------------- >C2 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCCT GGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGTCA TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGTTGTCC CGGCAGGACGTGGGACGGCTCAGCTACCAAAGTATCCATCGCATGTTGAG GGACGAAAACGAACCTGCCAGCTTTCGGGGGGAATTGCGATACCAACAGA AACGCCACAAAAGGGAGCTGGAGCTGAATGCGCCGGCCAACAAGCTTAAT CTCACCCACCGCGACTTAAGGACATTCAATAGCACTGGCGGTCAGTGGAA GGGGGACTTTCAAGTGATCACCGCCATGGATCTGAGCAGCAATCAACTGG AGAGCCTCAGCTTGGACAACTTCAATCAACTGAGGCAGCTGGACTTGGGT AACAACTCCCTGGAGGTTATACCCTTAAGTTTGGCAGACACCAATATGTC ACTACCCTTTGTGACGCTCGATCTTTCCTGCAACAAATTCAGCCAAATTT CTACGAGCTTTTTTGCCCAGAGATTGCCTCAGTTGAAAAATCTGAACCTG GCTCACAATGAATTGCTAAACATTTCCCGGGAATCATTCTACAATTTGTT GGAACTACAAACGTTAGTTCTCAGTCACAACAACATCTCGGATATTGACT ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT AACCGCTTGAGTGGATCCGCAATTCGTGCTCTGCAGGGAATTCCGGATTT GGTCAGCCTTTCCATCGCTTACAATCCAGATGTGGGAGTGGCGATGCAGG AGTTCGTCGCTTCCTGGAGCCTCAAAGAGTTGGATGCCAGTGGCACTGGA TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCTGTGAGGACTCTCAAGTT GTCCGACAACTGGCTCAAGGCAATTAATTGCGGTGACATGGACAGCTATC CGCTCCTGCAGTACCTTGATCTCTCGCACTCCCGCATTGCCCAAGTGGAG GACGATGCTCTGGGACGATTGGAGCTCCTCGAATCACTTTTCCTCGACCA CAATCTTCTGATGCGAGTGCCCAGCAGTCTGCCACCATCGCTGGAACACT TATTTCTGCAGCACAATCAGATAATGGAACTTCCGCCACAGGCTTTTGTG GGATTGGTCAATCTACAGACTCTGGACTTATCTAACAATCGATTGATCTT CCTGCCCCCGCTATCACTGCCCAAATTGCTCACCCTGAATCTGCAATCGT CAGGGGTGGAGAGTGTTAGTCAATCGATAGTGCACACACTGCCACAGTTA AGGGATCTTCTACTGGAGGACAACCCCATTAAGTGCAGCGATTTGCTGAG CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA ATGGGGCAAGTGTGAGTGGGCGCGTGGATCTAAAAACGGAGTATCTGCAG TTCCACAATTTCTACGAAAACTTCAGCAGCCGTGAGTGTGGTATAAGAAA ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTGACAAGGGCAGCAG CAACATTAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCACAA GAAGCACAACCAACAGCAACATCAGTGGAAGTAGCAGCGGCCGCAGCAGC AACATCAGAAAAAACAGAC---ATACACGCAACACCAGCAGCAGCA---- --CCATCAGCACAGTCGACTGCGGCGGCAACAACAGCAGAAAGAGAAGCG ATTGCAACAGCAACATCAAGCGACACCACAGCAACACCAACACTCGCAGC AGCAGCAGCA---------------ATGCAATCAGCTGGCAACATCCCTG CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG CGCTTCCCATTTTGGCAACACGAGATGCTGCTACA--------------- ---------------------GCAACAACGGAAATAAATTCCGACAAGCC AACGAACATTAGCGGTGCCACAAAAACAGTAGCAACATCAGCTGCAGAAA TAGCAACACCACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA AAATCTGACAAAATGCCAGCCGATAAGGCACACGAGACTTTATTAAAATA CCCAACAAGGGACACATCCGGTCAAGTTGCAACAACGCCA---------- -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT GGATGCCGAACAGCTGCTGCTGCCTGGTACGGCCACCGTGGCAGATGCGG ATTCG------GAAGTCCTGGACCCGAGCCAACAA---CATCAGTCAGCG GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT AAACGGCGACACA------------AAGTCGCCGGCGAAAAGCCACAAAA AGAAACCATCGCTGAGCATCAAGAAGATGACCTACAGTACCAAACACGCG GCGAAAACAGTGGAGGATATGGCAGCCACCTCGAAGACACCGCAACACCA ACATAGCAGTGTGAACACACCCAAAGAGGCTGCTCCCGAGGAGCTGAGCA CCTTTGCGCAGCTCAAAGCCTATGTGGAGCTAAAGAGCGAATCGAAACCG GAACACCTAATGGACCAGCGGGAGGAAAACCATCATAATCTTACAGGAAA TCATCCCGGAGTCATGCTCCTTGTGGCCTGCGTTTTGTTCATCGTCCTGC TCGCCGGTTTGGCCCACGTCTATCGCTGTGAATTGCCTTGGCAAAGGAGC AACCGCTCTGGTCAATTGCGACCGCATCATCAAAGGCATCTAAACGAAAC CGATGATGCGCATAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG GCGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGAGAGAA GCACCCTACAGCTCCCCGCTCCACAATCTGCAAGCGCGGGAACTGCAACA GCAACGCTGCCAGCAATTCTATAGCTCCTCGCTAGCGGACAAGAGCTCCT CCACCTCGTCATCCTCA------TCGGGAAGCAGTCGCAGTAGCCTGCAC TCGCCCAGCAGAGATGACAGCTACTATATAGAGATGGCCCCCAGTAGTCC AGCAGCAGCCAACCTGCCAAGTTTGCCCATGGAACTCTTGGGCAGCAGGA GTAATGCCTACGGTTGCCGGACGGATCGAGTGGCAGCCACCGATCTGGGC GGTACGACAGAGGCGGTACCCTCTTCGGCGGCGGCCATCAAGTCGGTGAG CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- -------------------------------------------- >C3 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT GGTCTGGACGTGGCTAACAAGGCTGGTGGTGGCGACCCATCTGGTCGACA TCCCCACCTCATCACGCCTGGCCGCCGAACGGGAGGAGCTGCAGCTATCC CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG GGACGAAAACGAACCGGCCAGCTTTAGGGGGGAATTGCGATACCAACAGA AACGCCACAAAAGGGAGCTGGAGCTCAATGCTCCGGCAAACAAGCTGAAT CTCACCCACCGCGACTTAAAAACATTCAATAGCACTGGTGGTCAGTGGAA GGGCGACTTTCAGGTCATCACCGCCATGGATCTGAGCAGCAATCAACTGG AGAACGTCAGCTTGGACAACTTCAATCAACTAAGGCAGCTGGACTTGGGC AATAACTCCCTGGAGGTTATACCCCTGAGTTTGGTCGACAACAATAAGTC ACTACCCCTTGTAACGCTCGATCTATCCTGCAACGAATTCAGACAAATTT CTACGAACTTTTTTGCCCAGCGATTGCCTCAGTTGAAACATCTGAACTTG GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT GGAACTACAAACGTTAATTCTCAGTCACAACAACATCTCGGATATAGACT ACGAAACATTTTTGGCACTACCGAATCTGCAATATCTGGATTTATCCCAT AACCGCTTGAGCGGATCCGCTATCAGAGCTCTGCAGGGAATTCCGGATTT GGTCAGCCTTTCAATCGCTTACAATCCAGAAGTGGGAGTGGCGATGCAGG AGTTCGTCGCATCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGCACTGGA TTGTGCCAGGTGCCTGCAGCTCTAGCCCAATCCGTGAGGACTCTCAAGTT GTCCGACAATTGGCTCAAGGCAATTAATTGCGGCGACATGGACAGCTACC CACTGCTGCAGTACCTTGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG GACGATGCCCTGGGACGACTGGAGCTCCTCGAGTCCCTTTTCCTCGACCA CAATCTTCTAATGCGAGTGCCCAGCAGCCTGCCGCCATCGCTGGAACACC TATTTCTGCAGCACAATCAGATAATGGAGCTTCCGCCTCAGGCTTTTGTG GGATTGGTCAATCTGCAGACTCTGGACTTATCCAGCAATCGATTGATCTT CCTGCCCCCGCTTTCGCTGCCCAAATTGCTCACCCTGAATCTGCAATCGT CAGGGGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA AGGGATCTTTTACTAGAGGACAACCCCATTAAGTGCAGCGATTTGCTGGG CATTGCCGAATGGGCCAGTCCTTGCAGGTCAGTGGATGTGGGTCAATCGA GTGGGGCAAGTGTGAGTGGGCGGGTGGACTTGAAGACGGAGTATCTGCAG TTCCACAATTTTTACGTAAACTTCAGTAGCCGAGGGTGTGTCATAAGAAA ACCGGAAAATGACACAAAGCTGCCTTCTTGCAGCCTGACAAGGGCAGCAG CAGCATCAACAACAACACCCGGAAGTATGTCAAAAGTTAAAAAGTCAAAA GAAACACAAGCACCAGCAACATCAGTGGAAGTAGCGGAGGCAACAGCAGC AATATCAGAAAAAACAGAC---ACCCAAGCAACATCAGCTGCAGCAGCAG ATACAGCAGAGCAGTCGACTGCAGCAGCAACAACAGCGGAAAAAGAAGCA ATCCCAACAGCAACATCAAGCGACACCACAGCAACACCAGCACTCGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAATGCAATCAGCTGGCAACAGCCTTG CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA AACGCCAGCAAAGAACCTGCCAAGTTTAGCCCAGACAATGGCAACAACAG CGCTTCCCATTTTGGCAACACGAGATGCCGACACG--------------- ---------------------GCAACAACAGAAATAAATTCCGACAAGCC AACGAACATTAGCGGTGCCACAAAAACAGCAGCAACATCAGCTGCTGAAA TACCAACAACACCAGCAATTGAAGTGCCACAAACCATTTTGGCCGGCAAA AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA CCCAACAAGGGACACATCCGGTCAAGTTGCAACACCGCCA---------- -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTCCTGGT GGACGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG ATGCGGATTCGGAAGTTCTGGACTCGAGCCAACAA---CATCAGTCAGCG GAGCAGGAAAAGCACCAGCCAGCGACTGATAAGCGACAAGCGGATGCAAT AAACGGCGACACA------------AAGTCGCCG---AAAAGCCACAAGA AGAAACCATCGCTGAGCATTAAGAAGATGACCTACACTACCAAACATGTG GCAAAAGCCGCGGAGGACATGGCAGCCACCGCGAAGACATCGCAACATCA ACATAGCAGTGTGAACACACCCAAGGAGTCTACTCCCGAGGAGCTGAGCA CCTTTGCCCAGCTAAAAGCCTTCGTAGAGCTAAAGAGCGAATCGAAACCG GAACACCTAATGGACCAGCGAGAGGAAAACCATCACAATCTCACAGGAAA TCATCCCGGGGTTATGCTTCTGGTAGCCTGCGTTTTGTTCATCGTGCTGC TAGCCGGTCTGGCCCACGTCTATCGCTGTGAATTGCCCTGGCAGAGGAGC AGCCGCTCCGGACAATCGCGACCGCATCATCAAAGGCATCTGAACGAAAC GGATGATGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAACTCCAATG GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACAGCACGCGGCGAGAA GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA GCAGCGCTGCCAGCAATTCTACAGCTCCTCGCTGGCGGACAAGAGCTCCT CCACCTCGTCATCCTCG------TCGGGAAGCAGTCGCAGCAGCCTGCAC TCGCCCAGCAGAGACGACAGCTACTACATAGAGATGGCGCCCAGTAGTCC ACCAGCAGCCCACCTGCCCAGTTTGCCCATGGAACTCTTGGGCAGCAGGA GCAATGTCCTCGGTTGCCGGGTGGACCGAGTGGCTGCCACCGATCTGGGC GGTACGACAGAGGCGGTACCTTCCTCGGCGGCGACCATCAAGTCGGTCAG CAGCAGACTGATGACGCCCAGTTCGCGGAGGCTGAACATCTGG------- -------------------------------------------- >C4 ATGGTGAAAATCGTGAACCAACACTGTGATCTAGGCCTGGCCCTCCTCTT TGCCTGGACGTGGCTAACAAGGCTGGTGGTGGCGGCCCATCTGGTCGACA TCCCCACCTCATCACGCCTGGCCGCCGAGCGGGAGGAGCTGCAGTTATCC CGGCAGGACGTGGGACGGCTCAGCTACCAGAGTATCCATCGCATGCTGAG GGACGAAAACGAACCGGCCAGCATTCGGGGGGAATTGCGATACCAACAGA AACGCCACAAAAGGGAGCTGGAGCTGAATGCTCCGGCAAACAAACTTAAT CTCACCCACCGCGACTTGAGGACATTCAATAGCACTGGTGGTCAGTGGAA GGGCGACTGTCAGGTGATCACAGCCATGGATCTGAGCAGCAATCAACTGG AGAGCATCAGCTTGGACAAATTCAATCAACTAAGGCAGCTGGACTTGGGC AATAACTCCCTGGAGGTTATACCCCTGAGCTTGGCCGACAACAATAAGTC ACTACCCTTTGTAACGCTCGATCTATCCTGTAATAAATTCTGCCAAATGT CTACGAGCTTTTTTGCCCAGCGATTGCCTCTGTTGAAACATCTTAACTTG GCTCACAATGAGTTGGTAAACATTTCGCGGGAATCCTTCTACAATTTGTT GGAACTACAAACGTTAGTTCTCAGTCACAACAAAATCTCGGATATAGACT ATGAAACATTTTTGGCGCTACCGAATCTGCAATATCTGGATTTATCCCAT AACCGCTTGAGTGGTTCCGCCATCCGAGCTCTGCAGGGAATTCCGGATTT GGTCAGCCTTTCTATCGCTTACAATCCTGATGTGGGAGTTGCGATGCAGG AGTTCGTCGCGTCCTGGAGCCTCAAGGAGTTGGATGCCAGTGGTACTGGA TTGTGCCAGGTGCCTGCAGCTTTAGCCCAATCCGTGAGGACTCTCAGGTT GGCCGACAACTGGCTTAAGGCAATTAATTGCGGTGACATGGACAGTTATC CACTGCTGCAGTACCTCGATCTCTCGCATTCCCGCATTGCCCAAGTGGAG GACGATGCTCTGGGACGACTGGAGCTCCTCGAATCCCTTTTCCTGGACCA CAATCTTCTGATGCGAGTGCCCAGTAGCCTGCCGCCATCGCTGGAACACT TATTTCTGCAGCACAATCAGATAATGGAGCTCCCGGCGCAGGCTTTTGTG GGATTGGTCAATCTGCAGACTCTGGACTTATCCAACAACCGATTGATTTT CCTGCCCCCACTTTCGCTGCCCAAATTGCTAACCCTGAATCTGCAATCGT CAGGAGTGGAGAGCGTTAGCCAATCGATAGTGCACACACTGCCACAGTTA AGGGATCTTTTGCTAGAGGACAACCCTATCAAGTGCAGCGATTTGCTGGG CATTGCCGAATGGGCCAGTCCATGCAGGTCAGTGGATGTGGGTCAATCGA ATGGGCCAAGCGTGAGTGGGCGGGTGGATTTGAAGACGGAGTATCTGCAG TTCCACAATTTTAACGAAAACTTCAGTAGCCGAGAGTGTGGTATAAGAAA ACCGGAAAATTACACAATGCCGCCTTCTTGCAGCGTGATAAGGGCAGCAG CAACATCAACAACAACACCCAGAAGTATGTCAAAAGTTAAAAAGTCAAAA GAAGCACAGGCAACAGCAACATCAGTGGAAGTAGCGGCGGCAACAGCAGC AACATCAGAAAAAACAGAC---ATACAAGGAACATCAGCTGCA------- -----------CAGTCCACTGCAGCAGCCACAACAGCGGAAAAAGAAACA ATCCCAACAGCAACATCGAGCGACACCACAGCAACACCAACACTCGCAGC AGCAACA------------------ATGCAATCAGCTGGCAACAGCCTCG CCCAGTTAACCACAAAAACGTTGCGGCCAACAGAAACAACTTCGTTAGCG CAACTGCAGCGTCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGA AACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG CGCTTCCCATTTTGGCAACACGAGATGCCGGCACA--------------- ---------------------GCAACAACAGAAATAAATTCCGACAACCC AACGAGCATTAGCGGTGCCACAAAAACAGCAGCAGCATCAGCCGCTGAAA TAGCAACAACACCAGCAATTGAAGTGCCGCAAACCATTTTGGCCGGCAAA AAATCTGACAAAATGCCAGCCGATAAGGCACAGGAGACTTTATTAAAATA CCCAACAAGGGACACGTCTGGTCAAATTGCAACACCACCA---------- -----------CACAAACATGCAACACTGCAGCTGCACGTTAAGGATCGA CATCTAATTGGCACACCGCTGCTGATGCACAAGGGCGATGTCCTTTTGGT GGATGCCGAGCAGTTGTTGCTCCCTGGTACGGCCACCGTGGCGGATGCGG ATTCG------GAAGTTCTGGACTCCAGCCAACAA---CATCAGTCAGCG GAGCAGGAAAAGCACCAGTCAGCGACTGATAAGCGACAAGCGGATGCAAT AAACGGCGACACA------------AAGGCGCCGGCGAAAAGCCACAAAA AGAAACCATCGCTGAGCATCAAAAAGATGACCTACAGTACCAAGCATGCG GCAAAAACCGTGGAGGACATGGCAGCTACCTCGAAGACACCGCAGCACCA ACATAGCAGTGTGAACACACCCAAGGAGGCTATTCCCGAGGAGCTGAGCA CCTTTGCCCAGCTAAAAGCATATGTAGAGCTAAAGAGCGAATCGAAACCG GAACACCTAATGGATCAGCGGGAGGGAACCCATCACAATCTTACAGGAAA TCATCCCGGTGTTATGCTCCTGGTGTCCTGCGTTTTGTTTATCGTGCTGC TTGCCGGTCTGGCCCACGTCTACCGCTGTGAATTGCCTTGGCAGAGGAGC AGCCGTTCTGGACAATCACGACCGCATCATCAAAGGCATCTAAACGAAAC GGATGACGCGCACAGCTTCCTGCACTATCAGGGATCTGTGAATTCCAATG GGGGAGATCCGGCTCGCCTGCAAAAGTGGCACCACTGCACCCGGAGAGAA GCTCCCTACAGCTCCCCGCTGCACAATCTACAAGCGCGCGAACTGCAACA GCAACGCTGCCAGCAATTCTACAGCTCCTCTCTGGCGGACAGAAGCTCCT CCACCTCGTCTTCCTCG------CCGGGAAGCAGTCGCAGTAGCCTGCAC TCGAACAGCAGGGATGACAGCTACTATATAGAGATGGCACCCAGTAGTCC ACCAGCAGCCAACCTGCCTAGTTTGCCCATGGAACTCTTGGGCAGCAGGA GCAACGCCCTTGGCTGCCGGGCGGACCGAGTGGCAGCCACCGATCTGGGC GGTACGACAGAGGCGGTACCTTCGTCGGCGGCGACCATCAAATCCGTGAG CAGCAGACTGATGACGCCCAGTTCGCGCAGGCTGAACATCTGG------- -------------------------------------------- >C5 ATGGTGAAAATTGTGAACCGACACTGTGATCTAGGCCTGGCCCTACTCCT GGCCTGGACATGGCTAACAAGGCAGGTGGTTTCGGCCCATCTGGTCGATA TTCCCACCTCATCTCGCCAGGCTGCCGAACGGGAGGAGCAGCAGTTATCC CTGCAGAATGGCGGTGGTCTCAGCTACCCGAGCATTCATCGAATGCTGAG GGACGAAAACGAACCGGCCAGCTTTCGAGGGGAATTACGATACCAACAGA AACGTCACAAAAGAGAGTTGGAGCTGAATGCTCCAGCCAACAAGCTTAAT CTCACCCACCGCGACTTGAGGAACTTTAATAGCAGTGGTGGTCAGTGGAA GGGTGACTTTCAGGTGATCACTGGTATGGATCTGAGTAGTAATCAACTGG AAAGTCTCAGTTTGAACAACTTCAATCAGCTGAGGCAACTGGATTTGGGT AACAACTCTTTGGAGGTTATACCTCTGAGCTTAGCTGATACCAACAAATC ACTTCCGTTCGTAACACTCGATCTTTCCTGCAACAAATTCAGCCAACTTT ACACCAACTTCTTTGTCCAGCGATTGCCTGAACTTAAGAACCTCAACTTG GCTTACAATCAATTGTTAAACATTTCAAGGGAATCATTCTACAATTTGTT GGAACTACAAACATTAATACTCAGTCACAACAACATCACGGATATAGACT ACGAAACCTTTTTGGCTCTGCCGAATCTGCAACATCTGGACTTATCCCAC AACCGCTTGAGTGGCTCTGCAATACGAGCTTTGCAGGGAATTCCGGATTT GGTCAGCCTTTCCATTGCCTACAATCCGGAAGTGGGAGTGGCCATGCAGG AGTTCGTCGCCTCCTGGAGTCTCAAGGAGTTGGATGCTAGTGGCACTGGA TTGTGCCAGGTGCCAGCAGCTTTAGCCCAATCTGTGAGGACTCTTAAGTT ATCCGACAACTGGTTAAAGGCCATCAACTGCGGCGACATGGACAGCTATC CCCTGCTGCAGTACCTTGATCTCTCTCACTCCCGGATTGCCCAAGTGGAA GACGATGCCCTGGGACGTTTGGAGCTCCTTGAATCTCTTTTCTTGGACCA CAATCTTCTAATGCGAGTGCCAAACAGTCTACCACCATCACTGGAACACC TATTCCTACAGCACAACCAGATAATGGAACTGCCACCTCAGACTTTCGTT GGCCTGGTCAACCTGCAGACCCTGGACTTGTCCCACAATCGTTTGATCTT TCTGCCCGCTCTTGCACTGCCCAAATTGCTTACCCTAAATCTGCAATCTT CAGGTGTAGAGAGTGTCAGCCAATCGATAGTGCACACATTGCCCCAGTTG AGGGATCTCTTACTGGAGGACAATCCCATAAAATGCAGCGATTTGCTGGG CATTGCCGAGTGGGCCAGCCCTTGCAGGTCAGTGGATGTGGGTCAGTCGA ATGGGAGAAGTCCAAGTGGGTGGGTGGACCTCAAGACGGAGTATCTGCAA TTTCACAATTTTTACGACAACTTCAGTAGCCGAGAGTGTGGAGCCAGGAA ACCGGAAAATGACACAAAGCCGCCTTCTTGCAGCCTCACAAGTGCCACAG CAGCATTAACAACAACGTCGAGAACTATGTCAAAAGTTAAAAAGTCAAAA GGAGCAGACACGACAGCAGCAGCAGCAGCAGTGGCAACATCAGAAAAACA CACAGCACATACAACAGACGACACACAGGCAACGTCAGCATCA------- --------ACTCAGCCAACTACAGGAGCAACATCAGCGGAAAAAGCAGCA ATTCCAACAGCAACACCAACTTCACCAACAGCA----------------- -------------------------ATGCAATCAGCTGGCAACAGCGTTG CCCAGTTAACCACAAAAACTTTGCGGCCAACAGAAACAACTTCGTTAGAG CAACTGCAGCAGCGGCAACAAATGCCTGGCATGCCGGCCAAAACAACAGC CACGCCAGCAAAGAACCTGCCAAGTTTGGCCCAGACAAAGGCAACAACAG CGGTTCCCATTTTGGCAGCCCCAGCAGCAGCAACAACACCAGCAGCTGCA GCAACAACAACAACAACAACAGCAGCAACAGCAATAAATTCCAACAAGCC AACGAACATTAGCGGTGCCACAAAAACAGCAACA---------GAAATGG TGGCAGCACCACCAGCAATTGAAGTGCCACAAACAATTTTGGCCGGAAAA AAATCTGACAAAATGCCAACCGATAAGGCACACGAGACTTTATTAAAATA CCCAACAAGGGACACATCCGGTCAAGCAGCAGCATCAGCAGCAGCAGCCG CAACACTGTCACACAAACATGCAACATTGCAGCTGCACGTTAAGGATCGA CATCTAATTGGCACACCGCTTCTGATGCACAAGGGCGATGTCCTTTTGGT GGATGCCGAGCAGTTGTTGCTGCCTGGAACGGCAACCGTGGCGGATGCGG ATTCG------GAAGTCTTGGACTCGAGCCAACAACAACATCAGTCGGCG GAGCAGGAAAAGCACCAGTCAGCGGCTGATAAGCGACAAGCGGAAGCCAT AAATGGCGACTCAAAGTCGTCGTCGTCGTCGCCACCAAAAAGTCACAAAA AGAAGCCATCGCTGAGTATCAAGAAGATGACCTACAGTACCAAACATGCA GTAAAAGCCGTTGAGGAACTACAAGCCACCTCCAAAACACCCCAGCACCA ACACAGCAGTGTCAACACACCCAAAGAGGCTTCGCCGGAGGAACTCAGTA CTTTCGCCCAGCTAAAGGCCTATGTGGAACTAAAAAGCGAATCGAAACCA GAACATTTAATGGACCAGCGAGAGGAAAACCTTCACAATCTTACAGGAAA TCATCCTGGAGTAATGTTGCTGGTAGCCTGCGTATTATTCATCGTATTGC TAGCAGGATTGGCTCATGTCTATCGCTGTGAATTGCCCTGGCAGAGAAGC AATCGACCTGGACAGATGCGCCCGCATCATCAAAGGCATCTAAACGACAC CGATGATGCCCATAGTTTTCTGCACTATCAGGGCTCTGTGAATTCCAATG GAGGAGATCCCGCCCGTTTACAAAAGTGGCATCATAGCACTCGGAGAGAA GCTCCTTATAGTTCTCCACTTCACAATCTGCAAGCTCGCGAGTTGCAACA GCAACGTTGCCAGCAATTCTATAGCTCATCTCTGGCGGACAAGAGCTCCT CCACTGCCTCCTCGTCTTCCTTATCGGGAAGCAGCCGCAGTAGCCTGCAT TCTCCCAGTAGAGATGATAGCTACTACATAGAGATGGCTCCCAGTAATCC ACCATCCGCCACCCTGCCTAGTTTACCCATGGAACTGTTGGGCAGCAGGA GTAATGGCCTAGGAAGCCGAACAGATCGAGTGGCTGCCACCGATCTGGGC GGAACGACAGCAGCGGTACCTTCTTCAGCGACAGCCATCAAGTCTGTTAG CAGCAGACTAATGGCTCCAAGTTCAAGGAGGTTGGGAATCTGG------- -------------------------------------------- >C1 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVDIPTSSRLAAEREEQQLS RQDVGRLSYQSIHRMLRDENEPDSFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRASATLTTTPRSMSKVEKSQ EAQATATSVEVAAATAATSEKTGoIQATooooooSAAQSTAAATTAEREA IATATSSDTTATPTLAAAAAoooooIQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATooooo oooooooATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTPoooooooHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDPSQQoHQSA EQEKHQSATDKRQADAINGDTooooKSPAKGHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH SPSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIW >C2 MVKIVNQHCDLGLALLLAWTWLTRLVVAAHLVVIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDFQVITAMDLSSNQLESLSLDNFNQLRQLDLG NNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLSIAEWASPCRSVDVGQSNGASVSGRVDLKTEYLQ FHNFYENFSSRECGIRKPENDTKPPSCSLTRAAATLTTTPRSMSKVKKSQ EAQPTATSVEVAAAAAATSEKTDoIHATPAAAooPSAQSTAAATTAEREA IATATSSDTTATPTLAAAAAoooooMQSAGNIPAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAATooooo oooooooATTEINSDKPTNISGATKTVATSAAEIATPPAIEVPQTILAGK KSDKMPADKAHETLLKYPTRDTSGQVATTPoooooooHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDPSQQoHQSA EQEKHQSATDKRQADAINGDTooooKSPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAAPEELSTFAQLKAYVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRSGQLRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH SPSRDDSYYIEMAPSSPAAANLPSLPMELLGSRSNAYGCRTDRVAATDLG GTTEAVPSSAAAIKSVSSRLMTPSSRRLNIW >C3 MVKIVNQHCDLGLALLLVWTWLTRLVVATHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLKTFNSTGGQWKGDFQVITAMDLSSNQLENVSLDNFNQLRQLDLG NNSLEVIPLSLVDNNKSLPLVTLDLSCNEFRQISTNFFAQRLPQLKHLNL AHNELVNISRESFYNLLELQTLILSHNNISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPPQAFV GLVNLQTLDLSSNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSSGASVSGRVDLKTEYLQ FHNFYVNFSSRGCVIRKPENDTKLPSCSLTRAAAASTTTPGSMSKVKKSK ETQAPATSVEVAEATAAISEKTDoTQATSAAAADTAEQSTAAATTAEKEA IPTATSSDTTATPALAAAAAAAAAAMQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTMATTALPILATRDADTooooo oooooooATTEINSDKPTNISGATKTAATSAAEIPTTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQVATPPoooooooHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADADSEVLDSSQQoHQSA EQEKHQPATDKRQADAINGDTooooKSPoKSHKKKPSLSIKKMTYTTKHV AKAAEDMAATAKTSQHQHSSVNTPKESTPEELSTFAQLKAFVELKSESKP EHLMDQREENHHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTSSSSooSGSSRSSLH SPSRDDSYYIEMAPSSPPAAHLPSLPMELLGSRSNVLGCRVDRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIW >C4 MVKIVNQHCDLGLALLFAWTWLTRLVVAAHLVDIPTSSRLAAEREELQLS RQDVGRLSYQSIHRMLRDENEPASIRGELRYQQKRHKRELELNAPANKLN LTHRDLRTFNSTGGQWKGDCQVITAMDLSSNQLESISLDKFNQLRQLDLG NNSLEVIPLSLADNNKSLPFVTLDLSCNKFCQMSTSFFAQRLPLLKHLNL AHNELVNISRESFYNLLELQTLVLSHNKISDIDYETFLALPNLQYLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLRLADNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPSSLPPSLEHLFLQHNQIMELPAQAFV GLVNLQTLDLSNNRLIFLPPLSLPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGPSVSGRVDLKTEYLQ FHNFNENFSSRECGIRKPENYTMPPSCSVIRAAATSTTTPRSMSKVKKSK EAQATATSVEVAAATAATSEKTDoIQGTSAAooooooQSTAAATTAEKET IPTATSSDTTATPTLAAATooooooMQSAGNSLAQLTTKTLRPTETTSLA QLQRRQQMPGMPAKTTETPAKNLPSLAQTKATTALPILATRDAGTooooo oooooooATTEINSDNPTSISGATKTAAASAAEIATTPAIEVPQTILAGK KSDKMPADKAQETLLKYPTRDTSGQIATPPoooooooHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDSSQQoHQSA EQEKHQSATDKRQADAINGDTooooKAPAKSHKKKPSLSIKKMTYSTKHA AKTVEDMAATSKTPQHQHSSVNTPKEAIPEELSTFAQLKAYVELKSESKP EHLMDQREGTHHNLTGNHPGVMLLVSCVLFIVLLAGLAHVYRCELPWQRS SRSGQSRPHHQRHLNETDDAHSFLHYQGSVNSNGGDPARLQKWHHCTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADRSSSTSSSSooPGSSRSSLH SNSRDDSYYIEMAPSSPPAANLPSLPMELLGSRSNALGCRADRVAATDLG GTTEAVPSSAATIKSVSSRLMTPSSRRLNIW >C5 MVKIVNRHCDLGLALLLAWTWLTRQVVSAHLVDIPTSSRQAAEREEQQLS LQNGGGLSYPSIHRMLRDENEPASFRGELRYQQKRHKRELELNAPANKLN LTHRDLRNFNSSGGQWKGDFQVITGMDLSSNQLESLSLNNFNQLRQLDLG NNSLEVIPLSLADTNKSLPFVTLDLSCNKFSQLYTNFFVQRLPELKNLNL AYNQLLNISRESFYNLLELQTLILSHNNITDIDYETFLALPNLQHLDLSH NRLSGSAIRALQGIPDLVSLSIAYNPEVGVAMQEFVASWSLKELDASGTG LCQVPAALAQSVRTLKLSDNWLKAINCGDMDSYPLLQYLDLSHSRIAQVE DDALGRLELLESLFLDHNLLMRVPNSLPPSLEHLFLQHNQIMELPPQTFV GLVNLQTLDLSHNRLIFLPALALPKLLTLNLQSSGVESVSQSIVHTLPQL RDLLLEDNPIKCSDLLGIAEWASPCRSVDVGQSNGRSPSGWVDLKTEYLQ FHNFYDNFSSRECGARKPENDTKPPSCSLTSATAALTTTSRTMSKVKKSK GADTTAAAAAVATSEKHTAHTTDDTQATSASoooooTQPTTGATSAEKAA IPTATPTSPTAooooooooooooooMQSAGNSVAQLTTKTLRPTETTSLE QLQQRQQMPGMPAKTTATPAKNLPSLAQTKATTAVPILAAPAAATTPAAA ATTTTTTAATAINSNKPTNISGATKTAToooEMVAAPPAIEVPQTILAGK KSDKMPTDKAHETLLKYPTRDTSGQAAASAAAAATLSHKHATLQLHVKDR HLIGTPLLMHKGDVLLVDAEQLLLPGTATVADADSooEVLDSSQQQHQSA EQEKHQSAADKRQAEAINGDSKSSSSSPPKSHKKKPSLSIKKMTYSTKHA VKAVEELQATSKTPQHQHSSVNTPKEASPEELSTFAQLKAYVELKSESKP EHLMDQREENLHNLTGNHPGVMLLVACVLFIVLLAGLAHVYRCELPWQRS NRPGQMRPHHQRHLNDTDDAHSFLHYQGSVNSNGGDPARLQKWHHSTRRE APYSSPLHNLQARELQQQRCQQFYSSSLADKSSSTASSSSLSGSSRSSLH SPSRDDSYYIEMAPSNPPSATLPSLPMELLGSRSNGLGSRTDRVAATDLG GTTAAVPSSATAIKSVSSRLMAPSSRRLGIW MrBayes v3.2.2 x64 (Bayesian Analysis of Phylogeny) Distributed under the GNU General Public License Type "help" or "help <command>" for information on the commands that are available. Type "about" for authorship and general information about the program. Executing file "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb" UNIX line termination Longest line length = 63 Parsing file Expecting NEXUS formatted file Reading data block Allocated taxon set Allocated matrix Defining new matrix with 5 taxa and 3594 characters Missing data coded as ? Data matrix is interleaved Data is Dna Gaps coded as - Matching characters coded as . Taxon 1 -> C1 Taxon 2 -> C2 Taxon 3 -> C3 Taxon 4 -> C4 Taxon 5 -> C5 Successfully read matrix Setting default partition (does not divide up characters) Setting model defaults Seed (for generating default start values) = 1480093056 Setting output file names to "/opt/ADOPS/1/2mit-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>" Exiting data block Reading mrbayes block Setting autoclose to yes Setting nowarnings to yes Defining charset called first_pos Defining charset called second_pos Defining charset called third_pos Defining partition called by_codon Setting by_codon as the partition, dividing characters into 3 parts. Setting model defaults Seed (for generating default start values) = 1969739849 Setting Nst to 6 for partition 1 Setting Nst to 6 for partition 2 Setting Nst to 6 for partition 3 Setting Rates to Invgamma for partition 1 Setting Rates to Invgamma for partition 2 Setting Rates to Invgamma for partition 3 Successfully set likelihood model parameters to all applicable data partitions Unlinking Setting number of generations to 1000000 Running Markov chain MCMC stamp = 7843527427 Seed = 1823930664 Swapseed = 1480093056 Model settings: Settings for partition 1 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 2 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 3 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Active parameters: Partition(s) Parameters 1 2 3 ------------------------ Revmat 1 1 1 Statefreq 2 2 2 Shape 3 3 4 Pinvar 5 5 5 Ratemultiplier 6 6 6 Topology 7 7 7 Brlens 8 8 8 ------------------------ Parameters can be linked or unlinked across partitions using 'link' and 'unlink' 1 -- Parameter = Revmat{all} Type = Rates of reversible rate matrix Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00) Partitions = All 2 -- Parameter = Pi{all} Type = Stationary state frequencies Prior = Dirichlet Partitions = All 3 -- Parameter = Alpha{1,2} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partitions = 1 and 2 4 -- Parameter = Alpha{3} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partition = 3 5 -- Parameter = Pinvar{all} Type = Proportion of invariable sites Prior = Uniform(0.00,1.00) Partitions = All 6 -- Parameter = Ratemultiplier{all} Type = Partition-specific rate multiplier Prior = Fixed(1.0) Partitions = All 7 -- Parameter = Tau{all} Type = Topology Prior = All topologies equally probable a priori Partitions = All Subparam. = V{all} 8 -- Parameter = V{all} Type = Branch lengths Prior = Unconstrained:Exponential(10.0) Partitions = All The MCMC sampler will use the following moves: With prob. Chain will use move 1.06 % Dirichlet(Revmat{all}) 1.06 % Slider(Revmat{all}) 1.06 % Dirichlet(Pi{all}) 1.06 % Slider(Pi{all}) 2.13 % Multiplier(Alpha{1,2}) 2.13 % Multiplier(Alpha{3}) 2.13 % Slider(Pinvar{all}) 10.64 % ExtSPR(Tau{all},V{all}) 10.64 % ExtTBR(Tau{all},V{all}) 10.64 % NNI(Tau{all},V{all}) 10.64 % ParsSPR(Tau{all},V{all}) 31.91 % Multiplier(V{all}) 10.64 % Nodeslider(V{all}) 4.26 % TLMultiplier(V{all}) Division 1 has 88 unique site patterns Division 2 has 62 unique site patterns Division 3 has 152 unique site patterns Initializing conditional likelihoods Using standard SSE likelihood calculator for division 1 (single-precision) Using standard SSE likelihood calculator for division 2 (single-precision) Using standard SSE likelihood calculator for division 3 (single-precision) Initializing invariable-site conditional likelihoods Initial log likelihoods and log prior probs for run 1: Chain 1 -- -10065.216368 -- -25.624409 Chain 2 -- -10065.216368 -- -25.624409 Chain 3 -- -10058.092041 -- -25.624409 Chain 4 -- -10065.216368 -- -25.624409 Initial log likelihoods and log prior probs for run 2: Chain 1 -- -10064.613834 -- -25.624409 Chain 2 -- -10110.160275 -- -25.624409 Chain 3 -- -10065.216368 -- -25.624409 Chain 4 -- -10117.050133 -- -25.624409 Using a relative burnin of 25.0 % for diagnostics Chain results (1000000 generations requested): 0 -- [-10065.216] (-10065.216) (-10058.092) (-10065.216) * [-10064.614] (-10110.160) (-10065.216) (-10117.050) 500 -- [-8818.565] (-8835.901) (-8854.050) (-8883.515) * [-8806.386] (-8882.085) (-8885.414) (-8866.877) -- 0:00:00 1000 -- [-8774.697] (-8804.022) (-8794.227) (-8839.323) * (-8778.394) (-8828.920) (-8803.741) [-8784.524] -- 0:00:00 1500 -- (-8730.941) (-8756.461) [-8722.238] (-8737.929) * (-8753.104) [-8740.556] (-8766.289) (-8753.638) -- 0:11:05 2000 -- (-8701.490) [-8711.458] (-8700.887) (-8709.095) * (-8713.211) [-8695.952] (-8707.765) (-8696.049) -- 0:08:19 2500 -- (-8676.591) [-8674.709] (-8672.735) (-8695.569) * (-8699.975) (-8689.414) [-8680.977] (-8684.017) -- 0:06:39 3000 -- (-8674.696) [-8669.789] (-8674.419) (-8676.227) * (-8679.213) (-8678.312) [-8675.990] (-8676.898) -- 0:05:32 3500 -- (-8671.468) (-8666.100) [-8668.288] (-8674.203) * (-8678.373) (-8674.670) (-8668.723) [-8673.006] -- 0:04:44 4000 -- [-8668.200] (-8672.990) (-8667.986) (-8671.362) * (-8679.097) [-8668.513] (-8675.926) (-8666.370) -- 0:08:18 4500 -- (-8663.688) (-8673.844) [-8666.194] (-8668.133) * (-8672.278) (-8670.418) (-8674.928) [-8666.902] -- 0:07:22 5000 -- (-8661.771) (-8668.673) [-8664.020] (-8669.561) * [-8667.038] (-8666.532) (-8669.626) (-8676.731) -- 0:06:38 Average standard deviation of split frequencies: 0.000000 5500 -- (-8666.183) (-8667.833) (-8671.672) [-8669.843] * (-8675.215) (-8670.275) (-8664.154) [-8666.573] -- 0:06:01 6000 -- (-8668.051) [-8665.115] (-8671.890) (-8677.997) * (-8668.038) (-8670.651) [-8668.712] (-8662.227) -- 0:08:17 6500 -- [-8665.948] (-8672.979) (-8670.199) (-8672.479) * (-8663.208) (-8672.380) (-8668.964) [-8669.801] -- 0:07:38 7000 -- [-8666.276] (-8661.099) (-8666.902) (-8662.315) * (-8671.922) [-8663.861] (-8665.150) (-8670.383) -- 0:07:05 7500 -- (-8667.103) (-8659.335) (-8677.548) [-8668.221] * (-8670.116) [-8669.427] (-8665.238) (-8674.374) -- 0:06:37 8000 -- [-8663.755] (-8670.468) (-8669.187) (-8669.600) * (-8663.341) (-8669.164) (-8663.344) [-8667.214] -- 0:08:16 8500 -- (-8665.853) (-8670.780) (-8666.570) [-8664.378] * [-8665.438] (-8670.113) (-8670.636) (-8668.852) -- 0:07:46 9000 -- (-8660.815) (-8671.173) (-8671.026) [-8666.506] * [-8667.050] (-8669.406) (-8664.848) (-8668.372) -- 0:07:20 9500 -- [-8668.013] (-8664.438) (-8668.469) (-8669.672) * (-8668.336) (-8675.298) [-8664.528] (-8667.151) -- 0:06:57 10000 -- [-8662.944] (-8668.193) (-8670.588) (-8670.523) * [-8666.341] (-8671.761) (-8667.241) (-8667.087) -- 0:06:36 Average standard deviation of split frequencies: 0.000000 10500 -- (-8662.292) (-8665.861) (-8667.372) [-8666.975] * (-8668.594) (-8674.951) (-8664.761) [-8668.596] -- 0:07:51 11000 -- (-8663.993) (-8677.982) [-8667.335] (-8663.555) * [-8669.675] (-8670.907) (-8666.795) (-8672.407) -- 0:07:29 11500 -- (-8664.475) (-8672.577) [-8669.289] (-8665.419) * (-8668.219) (-8671.527) (-8662.850) [-8667.326] -- 0:07:09 12000 -- (-8666.798) [-8669.810] (-8667.058) (-8670.132) * (-8671.805) (-8669.161) [-8663.722] (-8666.942) -- 0:06:51 12500 -- (-8668.806) (-8674.464) (-8666.369) [-8666.768] * [-8665.226] (-8666.905) (-8667.203) (-8664.113) -- 0:07:54 13000 -- (-8668.157) [-8670.488] (-8665.199) (-8667.089) * (-8670.449) [-8668.032] (-8668.222) (-8670.639) -- 0:07:35 13500 -- (-8668.912) (-8670.369) (-8668.451) [-8666.368] * [-8667.526] (-8672.214) (-8663.368) (-8666.766) -- 0:07:18 14000 -- (-8667.911) [-8665.718] (-8666.795) (-8670.695) * (-8668.069) (-8668.641) (-8661.717) [-8667.796] -- 0:07:02 14500 -- (-8663.330) (-8664.440) (-8668.722) [-8664.600] * (-8669.160) [-8672.225] (-8663.960) (-8668.491) -- 0:07:55 15000 -- [-8665.040] (-8663.924) (-8666.989) (-8666.767) * [-8667.121] (-8662.878) (-8663.580) (-8668.471) -- 0:07:39 Average standard deviation of split frequencies: 0.000000 15500 -- [-8665.453] (-8664.045) (-8668.464) (-8664.933) * (-8667.675) (-8666.058) (-8663.706) [-8671.896] -- 0:07:24 16000 -- [-8663.526] (-8673.383) (-8668.727) (-8668.850) * (-8672.188) (-8666.775) (-8670.675) [-8669.485] -- 0:07:10 16500 -- (-8667.109) (-8666.975) [-8667.406] (-8676.087) * (-8666.468) [-8666.066] (-8670.239) (-8676.075) -- 0:07:56 17000 -- (-8664.683) (-8669.130) [-8663.131] (-8670.927) * (-8669.710) (-8667.224) [-8664.799] (-8665.486) -- 0:07:42 17500 -- (-8664.473) (-8664.257) [-8667.807] (-8673.147) * (-8664.023) (-8665.141) (-8666.564) [-8670.906] -- 0:07:29 18000 -- [-8684.476] (-8671.133) (-8668.110) (-8668.539) * [-8664.138] (-8668.654) (-8665.526) (-8668.908) -- 0:07:16 18500 -- (-8677.112) (-8662.204) [-8665.114] (-8681.418) * (-8666.317) (-8662.294) [-8665.868] (-8665.393) -- 0:07:04 19000 -- (-8666.232) [-8663.479] (-8664.891) (-8667.192) * (-8663.168) (-8667.316) (-8667.345) [-8671.122] -- 0:07:44 19500 -- (-8664.340) [-8664.331] (-8662.601) (-8662.708) * (-8665.783) [-8667.029] (-8662.051) (-8670.649) -- 0:07:32 20000 -- (-8665.991) (-8669.204) (-8663.281) [-8662.929] * (-8667.401) [-8662.411] (-8668.693) (-8662.607) -- 0:07:21 Average standard deviation of split frequencies: 0.000000 20500 -- (-8667.068) [-8665.415] (-8668.095) (-8665.184) * (-8669.207) (-8666.970) (-8666.786) [-8667.037] -- 0:07:10 21000 -- (-8664.351) (-8664.108) (-8664.478) [-8667.678] * (-8666.624) (-8663.410) (-8664.561) [-8665.525] -- 0:07:46 21500 -- [-8659.921] (-8664.140) (-8666.680) (-8667.648) * (-8670.497) (-8667.762) (-8668.633) [-8664.158] -- 0:07:35 22000 -- (-8663.155) [-8668.485] (-8667.196) (-8666.982) * (-8668.697) (-8673.036) [-8665.624] (-8665.607) -- 0:07:24 22500 -- (-8664.387) (-8672.988) (-8667.296) [-8664.575] * (-8671.088) (-8671.311) [-8665.491] (-8667.908) -- 0:07:14 23000 -- (-8670.146) (-8665.784) (-8671.516) [-8663.927] * [-8664.227] (-8677.767) (-8675.247) (-8673.315) -- 0:07:47 23500 -- (-8666.895) (-8666.071) (-8670.524) [-8664.626] * [-8666.141] (-8674.273) (-8669.946) (-8672.191) -- 0:07:37 24000 -- [-8666.426] (-8666.605) (-8663.891) (-8672.497) * (-8663.182) (-8667.403) (-8661.461) [-8664.627] -- 0:07:27 24500 -- [-8666.455] (-8668.391) (-8670.812) (-8660.624) * [-8666.385] (-8665.325) (-8661.464) (-8674.544) -- 0:07:17 25000 -- [-8668.680] (-8672.482) (-8664.433) (-8659.158) * (-8665.834) (-8675.539) [-8668.522] (-8664.198) -- 0:07:09 Average standard deviation of split frequencies: 0.000000 25500 -- [-8670.395] (-8662.329) (-8663.407) (-8668.065) * (-8663.081) (-8675.831) [-8667.035] (-8669.911) -- 0:07:38 26000 -- (-8665.358) (-8668.798) (-8666.489) [-8661.847] * [-8666.001] (-8671.384) (-8670.108) (-8667.986) -- 0:07:29 26500 -- (-8665.114) [-8664.387] (-8669.526) (-8668.121) * (-8666.935) (-8672.573) [-8671.145] (-8670.075) -- 0:07:20 27000 -- (-8667.720) (-8666.450) (-8671.157) [-8671.075] * (-8668.694) [-8666.047] (-8666.223) (-8664.064) -- 0:07:12 27500 -- [-8673.249] (-8664.982) (-8666.215) (-8671.119) * (-8667.791) [-8664.165] (-8668.806) (-8665.887) -- 0:07:39 28000 -- (-8672.016) (-8669.951) (-8667.876) [-8665.047] * [-8667.795] (-8663.693) (-8664.010) (-8671.878) -- 0:07:31 28500 -- (-8667.589) [-8664.910] (-8668.153) (-8663.909) * (-8666.790) [-8665.684] (-8667.444) (-8673.299) -- 0:07:23 29000 -- (-8671.927) (-8669.949) [-8671.037] (-8672.572) * (-8667.478) (-8669.768) [-8667.028] (-8671.643) -- 0:07:15 29500 -- [-8669.315] (-8667.452) (-8676.260) (-8671.762) * (-8673.317) [-8666.017] (-8670.048) (-8673.768) -- 0:07:40 30000 -- (-8679.948) (-8666.856) (-8671.757) [-8667.761] * (-8675.519) [-8662.643] (-8668.309) (-8670.126) -- 0:07:32 Average standard deviation of split frequencies: 0.000000 30500 -- (-8671.581) (-8664.698) (-8666.326) [-8675.325] * (-8666.920) (-8661.757) (-8663.876) [-8667.392] -- 0:07:25 31000 -- [-8662.565] (-8665.345) (-8672.558) (-8667.897) * (-8668.359) (-8665.973) [-8665.230] (-8665.491) -- 0:07:17 31500 -- [-8665.855] (-8669.095) (-8676.116) (-8666.930) * (-8667.256) [-8668.502] (-8672.962) (-8666.592) -- 0:07:41 32000 -- (-8669.747) (-8667.036) [-8661.984] (-8662.431) * (-8670.828) [-8673.778] (-8674.140) (-8667.328) -- 0:07:33 32500 -- (-8664.161) (-8664.486) (-8672.610) [-8667.713] * (-8667.384) (-8664.661) (-8673.163) [-8673.259] -- 0:07:26 33000 -- [-8666.476] (-8670.434) (-8673.518) (-8662.018) * (-8672.800) (-8670.386) (-8672.206) [-8665.798] -- 0:07:19 33500 -- [-8664.386] (-8669.641) (-8667.837) (-8670.586) * (-8667.347) (-8668.134) (-8664.193) [-8668.608] -- 0:07:12 34000 -- [-8667.821] (-8663.433) (-8669.540) (-8670.561) * (-8666.800) [-8661.242] (-8666.248) (-8665.107) -- 0:07:34 34500 -- [-8667.120] (-8663.380) (-8669.571) (-8664.826) * [-8664.492] (-8663.807) (-8664.968) (-8671.901) -- 0:07:27 35000 -- (-8664.045) [-8670.479] (-8668.793) (-8668.218) * (-8675.382) [-8669.063] (-8662.071) (-8673.746) -- 0:07:21 Average standard deviation of split frequencies: 0.000000 35500 -- [-8662.787] (-8666.856) (-8672.531) (-8673.412) * [-8660.114] (-8667.606) (-8663.457) (-8665.966) -- 0:07:14 36000 -- [-8663.681] (-8665.475) (-8675.568) (-8668.621) * [-8668.358] (-8674.133) (-8663.781) (-8667.123) -- 0:07:35 36500 -- (-8676.645) [-8665.853] (-8670.557) (-8664.260) * (-8667.260) (-8662.885) [-8666.583] (-8662.540) -- 0:07:28 37000 -- [-8669.666] (-8667.766) (-8670.265) (-8668.839) * (-8669.513) (-8668.776) [-8665.327] (-8662.167) -- 0:07:22 37500 -- (-8664.294) (-8668.537) (-8668.750) [-8668.452] * (-8664.780) (-8666.250) [-8661.384] (-8666.756) -- 0:07:16 38000 -- (-8670.451) (-8676.471) (-8671.565) [-8668.029] * (-8671.180) [-8666.632] (-8670.676) (-8673.514) -- 0:07:35 38500 -- (-8669.173) (-8671.447) (-8668.221) [-8670.749] * (-8663.109) [-8667.950] (-8663.920) (-8670.504) -- 0:07:29 39000 -- (-8675.151) (-8662.931) [-8668.670] (-8666.620) * (-8664.519) (-8670.808) [-8668.406] (-8666.343) -- 0:07:23 39500 -- (-8672.357) [-8668.720] (-8664.080) (-8670.836) * (-8664.532) [-8671.969] (-8664.548) (-8669.662) -- 0:07:17 40000 -- [-8667.806] (-8667.946) (-8669.396) (-8671.016) * [-8664.859] (-8670.810) (-8669.096) (-8672.267) -- 0:07:36 Average standard deviation of split frequencies: 0.000000 40500 -- [-8665.660] (-8668.278) (-8667.284) (-8669.242) * (-8668.235) (-8670.840) (-8664.929) [-8674.701] -- 0:07:30 41000 -- (-8672.221) (-8671.229) [-8676.580] (-8673.007) * (-8664.042) (-8663.754) [-8668.029] (-8670.974) -- 0:07:24 41500 -- (-8665.847) [-8670.907] (-8668.026) (-8673.233) * (-8668.255) (-8675.333) [-8665.097] (-8675.323) -- 0:07:18 42000 -- (-8667.282) (-8670.043) (-8666.448) [-8673.038] * [-8664.145] (-8666.404) (-8671.041) (-8671.713) -- 0:07:13 42500 -- (-8672.387) [-8664.698] (-8666.507) (-8670.267) * (-8670.273) [-8673.262] (-8668.995) (-8665.621) -- 0:07:30 43000 -- (-8671.463) [-8667.067] (-8669.562) (-8667.225) * [-8670.455] (-8668.417) (-8669.220) (-8664.280) -- 0:07:25 43500 -- (-8667.356) [-8672.230] (-8668.954) (-8672.702) * (-8666.663) [-8663.117] (-8662.650) (-8664.307) -- 0:07:19 44000 -- (-8675.783) [-8667.999] (-8665.938) (-8671.790) * (-8659.702) (-8672.101) [-8665.151] (-8668.329) -- 0:07:14 44500 -- [-8674.125] (-8670.446) (-8670.845) (-8669.030) * (-8665.479) (-8667.352) [-8664.652] (-8673.573) -- 0:07:30 45000 -- [-8672.758] (-8672.465) (-8675.959) (-8666.609) * (-8670.193) [-8665.850] (-8665.470) (-8669.868) -- 0:07:25 Average standard deviation of split frequencies: 0.000000 45500 -- (-8672.156) [-8670.040] (-8671.743) (-8664.026) * (-8669.574) (-8677.040) [-8665.182] (-8666.708) -- 0:07:20 46000 -- (-8670.567) (-8666.908) [-8668.667] (-8669.141) * (-8672.139) (-8664.955) [-8673.333] (-8676.686) -- 0:07:15 46500 -- (-8667.938) (-8666.022) [-8662.469] (-8661.466) * (-8673.837) [-8670.521] (-8678.968) (-8663.079) -- 0:07:31 47000 -- (-8670.366) (-8665.302) (-8669.001) [-8667.779] * [-8667.423] (-8662.077) (-8672.241) (-8665.661) -- 0:07:26 47500 -- [-8674.060] (-8667.662) (-8666.154) (-8664.903) * (-8665.536) [-8664.814] (-8672.609) (-8668.382) -- 0:07:21 48000 -- (-8670.161) (-8666.181) (-8663.075) [-8669.448] * (-8664.465) (-8669.116) (-8668.632) [-8670.187] -- 0:07:16 48500 -- (-8668.900) [-8666.218] (-8666.301) (-8672.032) * [-8669.480] (-8671.209) (-8665.994) (-8673.390) -- 0:07:31 49000 -- (-8666.103) (-8665.766) (-8669.285) [-8668.074] * (-8672.659) (-8669.191) [-8667.405] (-8672.487) -- 0:07:26 49500 -- (-8671.532) (-8666.562) [-8670.869] (-8666.644) * [-8664.044] (-8669.606) (-8666.450) (-8670.929) -- 0:07:21 50000 -- (-8668.768) (-8664.511) [-8669.905] (-8667.079) * [-8664.823] (-8668.924) (-8674.354) (-8668.933) -- 0:07:17 Average standard deviation of split frequencies: 0.000000 50500 -- (-8669.647) (-8669.162) [-8667.616] (-8666.191) * (-8675.522) (-8670.332) [-8671.893] (-8669.684) -- 0:07:12 51000 -- (-8667.420) (-8673.991) [-8668.302] (-8671.118) * [-8668.409] (-8665.276) (-8665.820) (-8672.717) -- 0:07:26 51500 -- (-8667.618) (-8665.249) (-8670.754) [-8668.452] * [-8669.895] (-8667.205) (-8667.757) (-8664.598) -- 0:07:22 52000 -- (-8668.840) (-8667.745) (-8668.621) [-8669.326] * (-8664.406) [-8665.910] (-8670.218) (-8663.705) -- 0:07:17 52500 -- (-8666.772) (-8667.943) [-8661.615] (-8677.836) * (-8663.539) (-8669.520) (-8672.422) [-8663.981] -- 0:07:13 53000 -- (-8670.378) [-8668.016] (-8664.058) (-8668.703) * (-8663.759) [-8668.059] (-8668.243) (-8663.740) -- 0:07:26 53500 -- [-8663.170] (-8668.343) (-8668.203) (-8666.658) * (-8665.708) (-8661.545) (-8669.954) [-8666.842] -- 0:07:22 54000 -- (-8669.744) [-8670.998] (-8675.592) (-8668.833) * (-8668.099) [-8671.903] (-8669.318) (-8669.889) -- 0:07:17 54500 -- (-8667.602) (-8670.369) (-8667.855) [-8665.862] * (-8671.925) [-8668.344] (-8665.851) (-8668.708) -- 0:07:13 55000 -- (-8670.510) (-8663.698) (-8665.737) [-8665.525] * (-8668.212) [-8660.022] (-8661.049) (-8669.535) -- 0:07:26 Average standard deviation of split frequencies: 0.000000 55500 -- (-8665.468) [-8662.922] (-8667.942) (-8665.066) * (-8662.539) (-8665.769) [-8665.345] (-8669.191) -- 0:07:22 56000 -- (-8672.451) [-8661.975] (-8669.175) (-8669.073) * (-8667.399) (-8669.539) [-8668.269] (-8668.396) -- 0:07:18 56500 -- (-8666.794) (-8665.646) [-8667.767] (-8663.554) * (-8662.045) (-8672.037) (-8662.924) [-8669.312] -- 0:07:14 57000 -- [-8668.454] (-8666.525) (-8663.964) (-8667.648) * (-8667.500) (-8672.352) [-8668.349] (-8666.302) -- 0:07:26 57500 -- (-8664.116) (-8666.065) (-8661.527) [-8668.250] * (-8667.521) (-8669.800) (-8669.285) [-8668.070] -- 0:07:22 58000 -- [-8664.320] (-8666.101) (-8667.783) (-8665.572) * (-8675.582) (-8670.211) (-8667.571) [-8662.079] -- 0:07:18 58500 -- (-8670.001) (-8667.003) (-8664.163) [-8660.971] * (-8669.455) (-8672.462) (-8668.198) [-8667.799] -- 0:07:14 59000 -- (-8670.255) (-8668.219) (-8663.022) [-8665.181] * (-8668.273) [-8665.193] (-8669.000) (-8666.256) -- 0:07:26 59500 -- (-8667.669) [-8670.686] (-8665.576) (-8669.829) * [-8667.175] (-8664.615) (-8678.344) (-8666.396) -- 0:07:22 60000 -- (-8667.345) (-8672.683) [-8666.430] (-8665.567) * [-8664.059] (-8664.984) (-8671.972) (-8666.819) -- 0:07:18 Average standard deviation of split frequencies: 0.000000 60500 -- (-8664.733) (-8674.144) [-8666.862] (-8672.068) * [-8665.560] (-8668.013) (-8667.484) (-8669.114) -- 0:07:14 61000 -- (-8667.850) (-8665.288) (-8667.176) [-8665.252] * (-8664.143) (-8669.731) (-8669.230) [-8667.398] -- 0:07:11 61500 -- (-8663.684) (-8666.382) (-8668.573) [-8665.916] * (-8663.663) [-8670.613] (-8663.123) (-8663.754) -- 0:07:22 62000 -- (-8669.051) (-8674.740) [-8668.375] (-8666.339) * (-8662.864) (-8668.695) (-8669.110) [-8664.786] -- 0:07:18 62500 -- (-8676.692) (-8672.246) (-8661.518) [-8670.598] * (-8666.655) (-8670.258) [-8665.253] (-8670.952) -- 0:07:15 63000 -- (-8673.971) [-8667.517] (-8665.590) (-8666.467) * (-8677.357) [-8672.714] (-8666.725) (-8665.599) -- 0:07:11 63500 -- [-8667.784] (-8664.725) (-8668.112) (-8670.708) * [-8673.894] (-8674.494) (-8673.905) (-8670.282) -- 0:07:22 64000 -- (-8663.908) (-8661.118) [-8664.423] (-8668.182) * (-8670.956) (-8676.877) [-8668.910] (-8671.620) -- 0:07:18 64500 -- (-8664.520) [-8663.606] (-8660.141) (-8669.436) * [-8663.056] (-8680.857) (-8670.962) (-8665.913) -- 0:07:15 65000 -- (-8665.055) (-8670.335) (-8667.448) [-8671.686] * (-8659.458) (-8666.639) (-8665.732) [-8669.265] -- 0:07:11 Average standard deviation of split frequencies: 0.000000 65500 -- (-8667.320) [-8665.735] (-8668.867) (-8677.267) * (-8659.720) [-8671.516] (-8671.465) (-8668.922) -- 0:07:22 66000 -- (-8666.093) [-8665.553] (-8666.252) (-8672.855) * (-8672.607) (-8673.082) (-8668.999) [-8672.459] -- 0:07:18 66500 -- (-8671.977) (-8664.067) (-8668.597) [-8674.835] * (-8667.197) (-8670.855) (-8673.375) [-8671.246] -- 0:07:15 67000 -- [-8669.888] (-8669.272) (-8669.803) (-8671.573) * (-8666.998) (-8671.577) [-8677.824] (-8675.082) -- 0:07:11 67500 -- (-8668.179) [-8665.871] (-8671.334) (-8660.724) * (-8668.218) [-8668.776] (-8671.615) (-8669.059) -- 0:07:22 68000 -- (-8665.572) (-8665.762) (-8664.493) [-8668.992] * (-8668.824) [-8668.029] (-8669.420) (-8667.369) -- 0:07:18 68500 -- [-8663.800] (-8666.038) (-8669.981) (-8666.497) * (-8664.464) (-8664.252) [-8665.071] (-8672.305) -- 0:07:15 69000 -- (-8669.110) (-8666.877) [-8670.168] (-8667.228) * (-8672.611) (-8663.138) [-8672.387] (-8669.077) -- 0:07:11 69500 -- (-8673.911) (-8668.256) [-8668.553] (-8672.900) * (-8668.749) (-8666.777) (-8670.578) [-8668.137] -- 0:07:08 70000 -- (-8665.474) (-8668.968) [-8667.493] (-8666.113) * (-8671.257) [-8670.900] (-8664.077) (-8667.746) -- 0:07:18 Average standard deviation of split frequencies: 0.000000 70500 -- (-8670.148) [-8666.534] (-8668.715) (-8659.049) * (-8666.748) (-8673.769) (-8666.783) [-8661.452] -- 0:07:15 71000 -- [-8669.350] (-8668.466) (-8668.917) (-8665.587) * (-8669.404) (-8670.594) (-8675.210) [-8665.205] -- 0:07:11 71500 -- (-8665.282) (-8667.763) (-8670.780) [-8659.961] * [-8665.080] (-8665.720) (-8668.995) (-8660.218) -- 0:07:08 72000 -- (-8664.200) (-8671.786) (-8668.901) [-8660.312] * (-8664.322) (-8665.995) (-8671.858) [-8660.897] -- 0:07:18 72500 -- (-8666.876) [-8665.372] (-8666.301) (-8660.950) * (-8665.902) [-8667.638] (-8675.799) (-8663.134) -- 0:07:14 73000 -- (-8669.493) (-8673.298) (-8664.486) [-8661.654] * [-8670.294] (-8665.448) (-8672.484) (-8664.949) -- 0:07:11 73500 -- (-8667.212) [-8665.155] (-8664.912) (-8673.216) * (-8667.855) (-8667.317) [-8663.613] (-8662.400) -- 0:07:08 74000 -- [-8664.913] (-8660.838) (-8661.173) (-8666.739) * (-8670.180) (-8666.625) [-8666.326] (-8669.618) -- 0:07:17 74500 -- (-8667.321) (-8664.937) (-8665.549) [-8669.427] * (-8665.205) [-8666.201] (-8666.551) (-8671.502) -- 0:07:14 75000 -- (-8664.820) (-8668.425) [-8666.095] (-8668.527) * (-8664.010) (-8670.084) (-8666.629) [-8666.821] -- 0:07:11 Average standard deviation of split frequencies: 0.000000 75500 -- (-8667.799) [-8665.031] (-8669.448) (-8666.792) * (-8666.191) [-8666.895] (-8664.379) (-8664.091) -- 0:07:08 76000 -- (-8669.358) [-8666.260] (-8665.130) (-8663.401) * (-8660.409) (-8672.734) (-8662.951) [-8665.665] -- 0:07:17 76500 -- (-8669.248) [-8671.274] (-8673.338) (-8669.995) * (-8664.004) (-8666.133) (-8670.821) [-8661.345] -- 0:07:14 77000 -- (-8672.033) (-8679.321) (-8670.174) [-8668.422] * (-8667.539) [-8663.500] (-8671.698) (-8665.666) -- 0:07:11 77500 -- (-8668.617) (-8665.957) [-8666.004] (-8667.674) * (-8673.687) (-8661.575) [-8668.805] (-8668.679) -- 0:07:08 78000 -- (-8668.365) (-8664.744) (-8671.877) [-8668.536] * (-8666.540) (-8665.362) [-8669.917] (-8666.729) -- 0:07:05 78500 -- (-8663.376) [-8664.506] (-8669.174) (-8670.690) * (-8667.121) [-8663.482] (-8667.538) (-8665.597) -- 0:07:14 79000 -- (-8672.297) [-8664.753] (-8675.023) (-8662.477) * [-8660.593] (-8662.982) (-8670.584) (-8664.232) -- 0:07:11 79500 -- (-8667.523) (-8665.880) (-8671.411) [-8665.407] * [-8663.523] (-8678.028) (-8667.399) (-8661.093) -- 0:07:08 80000 -- (-8669.018) [-8673.347] (-8669.701) (-8663.438) * (-8668.298) (-8671.189) [-8668.150] (-8662.907) -- 0:07:05 Average standard deviation of split frequencies: 0.000000 80500 -- [-8665.981] (-8672.051) (-8673.184) (-8664.065) * (-8665.369) (-8670.367) [-8665.688] (-8665.456) -- 0:07:14 81000 -- [-8666.982] (-8672.591) (-8665.780) (-8660.648) * [-8665.609] (-8663.661) (-8664.591) (-8665.520) -- 0:07:11 81500 -- [-8666.800] (-8672.011) (-8666.377) (-8673.251) * (-8669.392) (-8672.221) [-8664.160] (-8666.828) -- 0:07:08 82000 -- (-8667.795) [-8668.090] (-8661.301) (-8667.989) * (-8666.795) (-8667.396) (-8668.678) [-8667.103] -- 0:07:05 82500 -- [-8667.404] (-8671.568) (-8672.770) (-8667.122) * (-8674.949) (-8670.700) [-8662.015] (-8660.786) -- 0:07:13 83000 -- (-8669.203) (-8675.611) (-8667.788) [-8661.721] * (-8671.381) (-8674.791) [-8667.513] (-8667.305) -- 0:07:10 83500 -- (-8672.427) [-8666.876] (-8664.338) (-8666.212) * (-8672.616) (-8670.517) (-8664.505) [-8662.856] -- 0:07:08 84000 -- (-8675.030) [-8663.378] (-8664.951) (-8660.981) * (-8675.305) (-8667.216) [-8665.326] (-8666.749) -- 0:07:05 84500 -- (-8671.