--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Fri Nov 25 15:45:35 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/1/140up-PB/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -2398.91         -2412.29
2      -2398.87         -2412.96
--------------------------------------
TOTAL    -2398.89         -2412.68
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.817729    0.008042    0.657456    1.004305    0.811009   1081.66   1090.27    1.000
r(A<->C){all}   0.078667    0.000399    0.040214    0.117740    0.077390   1023.22   1145.72    1.000
r(A<->G){all}   0.198506    0.001051    0.138550    0.262135    0.196230    721.19    829.48    1.000
r(A<->T){all}   0.110319    0.000837    0.055637    0.166030    0.108921    850.56    898.52    1.000
r(C<->G){all}   0.063209    0.000266    0.031362    0.093662    0.062604    915.87   1030.72    1.001
r(C<->T){all}   0.492165    0.002433    0.392763    0.584091    0.492397    663.90    822.16    1.000
r(G<->T){all}   0.057134    0.000368    0.022753    0.095873    0.055229   1040.26   1090.41    1.000
pi(A){all}      0.258985    0.000207    0.229776    0.286546    0.258728   1222.57   1231.93    1.000
pi(C){all}      0.263456    0.000193    0.237335    0.291451    0.263350   1086.03   1166.34    1.000
pi(G){all}      0.269120    0.000215    0.239870    0.296685    0.268557   1031.94   1109.77    1.000
pi(T){all}      0.208439    0.000176    0.183002    0.234384    0.208114    915.59   1032.20    1.000
alpha{1,2}      0.081071    0.001181    0.002507    0.130731    0.087654   1099.90   1142.48    1.001
alpha{3}        3.089106    0.902213    1.597014    5.108281    2.951970   1246.35   1325.53    1.000
pinvar{all}     0.199959    0.005289    0.053441    0.335501    0.202828    915.85   1004.19    1.002
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-2265.340105
Model 2: PositiveSelection	-2265.340105
Model 0: one-ratio	-2296.71442
Model 3: discrete	-2263.30653
Model 7: beta	-2263.441582
Model 8: beta&w>1	-2263.4416


Model 0 vs 1	62.74862999999914

Model 2 vs 1	0.0

Model 8 vs 7	3.600000036385609E-5
>C1
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK
>C2
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C3
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C4
MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN
NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK
TAEQVSLDSIK
>C5
MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK
VPEEVSLDSVK
>C6
MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER
LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK
KSSEVSLDSVK
>C7
MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS
VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK
VPEQVSLDSVK
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=261 

C1              MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
C2              MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER
C3              MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER
C4              MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER
C5              MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER
C6              MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER
C7              MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER
                *.*: ************ :: ..*:* ***.*******  * *****:**

C1              LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
C2              LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
C3              LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
C4              LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN
C5              LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
C6              LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
C7              LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
                **:**:*************:*********:************.*******

C1              NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
C2              NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
C3              NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
C4              NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS
C5              NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
C6              NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
C7              NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS
                *:****************:***********************:*****:*

C1              VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
C2              VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
C3              VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
C4              VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL
C5              VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
C6              VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
C7              VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
                ****************:******:.*******************.*****

C1              LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
C2              LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
C3              LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
C4              LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK
C5              LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK
C6              LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK
C7              LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK
                *************************:*** ********: * ***.****

C1              TSEHVSLDTIK
C2              TSEQVSLDTIK
C3              TSEQVSLDTIK
C4              TAEQVSLDSIK
C5              VPEEVSLDSVK
C6              KSSEVSLDSVK
C7              VPEQVSLDSVK
                 ...****::*




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 ins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  261 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  261 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [10962]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [10962]--->[10962]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.398 Mb, Max= 30.781 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK
>C2
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C3
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C4
MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN
NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK
TAEQVSLDSIK
>C5
MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK
VPEEVSLDSVK
>C6
MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER
LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK
KSSEVSLDSVK
>C7
MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS
VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK
VPEQVSLDSVK

FORMAT of file /tmp/tmp3342885000778637361aln Not Supported[FATAL:T-COFFEE]
>C1
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK
>C2
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C3
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C4
MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN
NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK
TAEQVSLDSIK
>C5
MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK
VPEEVSLDSVK
>C6
MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER
LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK
KSSEVSLDSVK
>C7
MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS
VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK
VPEQVSLDSVK
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:261 S:100 BS:261
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES 
BOT	    0    1	 96.55 C1	 C2	 96.55
TOP	    1    0	 96.55 C2	 C1	 96.55
BOT	    0    2	 96.17 C1	 C3	 96.17
TOP	    2    0	 96.17 C3	 C1	 96.17
BOT	    0    3	 92.34 C1	 C4	 92.34
TOP	    3    0	 92.34 C4	 C1	 92.34
BOT	    0    4	 92.34 C1	 C5	 92.34
TOP	    4    0	 92.34 C5	 C1	 92.34
BOT	    0    5	 92.72 C1	 C6	 92.72
TOP	    5    0	 92.72 C6	 C1	 92.72
BOT	    0    6	 91.57 C1	 C7	 91.57
TOP	    6    0	 91.57 C7	 C1	 91.57
BOT	    1    2	 99.62 C2	 C3	 99.62
TOP	    2    1	 99.62 C3	 C2	 99.62
BOT	    1    3	 90.80 C2	 C4	 90.80
TOP	    3    1	 90.80 C4	 C2	 90.80
BOT	    1    4	 90.80 C2	 C5	 90.80
TOP	    4    1	 90.80 C5	 C2	 90.80
BOT	    1    5	 91.19 C2	 C6	 91.19
TOP	    5    1	 91.19 C6	 C2	 91.19
BOT	    1    6	 91.19 C2	 C7	 91.19
TOP	    6    1	 91.19 C7	 C2	 91.19
BOT	    2    3	 90.42 C3	 C4	 90.42
TOP	    3    2	 90.42 C4	 C3	 90.42
BOT	    2    4	 90.42 C3	 C5	 90.42
TOP	    4    2	 90.42 C5	 C3	 90.42
BOT	    2    5	 90.80 C3	 C6	 90.80
TOP	    5    2	 90.80 C6	 C3	 90.80
BOT	    2    6	 90.80 C3	 C7	 90.80
TOP	    6    2	 90.80 C7	 C3	 90.80
BOT	    3    4	 90.80 C4	 C5	 90.80
TOP	    4    3	 90.80 C5	 C4	 90.80
BOT	    3    5	 90.42 C4	 C6	 90.42
TOP	    5    3	 90.42 C6	 C4	 90.42
BOT	    3    6	 91.57 C4	 C7	 91.57
TOP	    6    3	 91.57 C7	 C4	 91.57
BOT	    4    5	 94.25 C5	 C6	 94.25
TOP	    5    4	 94.25 C6	 C5	 94.25
BOT	    4    6	 94.25 C5	 C7	 94.25
TOP	    6    4	 94.25 C7	 C5	 94.25
BOT	    5    6	 93.49 C6	 C7	 93.49
TOP	    6    5	 93.49 C7	 C6	 93.49
AVG	 0	 C1	  *	 93.61
AVG	 1	 C2	  *	 93.36
AVG	 2	 C3	  *	 93.04
AVG	 3	 C4	  *	 91.06
AVG	 4	 C5	  *	 92.15
AVG	 5	 C6	  *	 92.15
AVG	 6	 C7	  *	 92.15
TOT	 TOT	  *	 92.50
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
C2              ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
C3              ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
C4              ATGAATTTTCTGTGGAAAGGCCGTCGGTTTCTGATCGCAGGTATCCTGCC
C5              ATGAGTTTCTTGTGGAAAGGACGCCGGTTTCTGATCGCCGGGATCCTGCC
C6              ATGAGTTTCTTGTGGAAAGGACGACGGTTTTTGATTGCCGGCATTCTGCC
C7              ATGAGTTTTTTGTTGAAAGGACGCCGGTTTTTGATCGCCGGCATCCTGCC
                ****.***  *** ******.** ****** **** **.** ** *****

C1              AACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAACAAAACAT
C2              AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT
C3              AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT
C4              AACATTTGACGGCAGCTCAGACGACATAATCGACAAGGAAAGCAAAACTT
C5              GATCATGGAAAACGGCGCCGACGACATAAAGGACAAGGAAAACAAGACCT
C6              AGTCCTAGAACGCGGCGCAGATGACATAGTGGATAAGGAAAACAAGACCT
C7              AGCTTTTGAACGCGGCCCAGACGACATAGTGGATAAGGAAAACAAGACTT
                ..   *  *. .*. * *.** **.***.: ** *******. **.** *

C1              ACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACAGGACTGGAGCGC
C2              ACAAGGCATTTCTGGACAGTAAACTACCAGAAGAAACGGGACTGGAGCGC
C3              ACAAGGCCTTTCTGGACCGTAAACTACCAGAGGAAACGGGACTGGAGCGC
C4              ACAAGGCCTTCCTGGCCAGTAAACCACCAGAGGAAACGGGACTGGAGCGC
C5              ACAAGGCTTTCCTGGCCAGTAAACCGCCGGAGGAAACGGGTCTGGAGCGC
C6              ACAAGGCATTCCTAGCCAGTAAACCACCAGAGGAAACAGGAATGGAGCGC
C7              ATAAGGCATTCCTGGCCAGTAAACCGCCAGAGGAAACGGGACTGGAGCGC
                * ***** ** **.*.*.****** .**.**.*****.**:.********

C1              CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
C2              CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
C3              CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
C4              CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCGTCCGAACT
C5              CTCAAACAAATGTTTTCCATCGACGAGTTTGGAAGCATATCCTCCGAGTT
C6              CTTAAACATATGTTTACAATCGACGAGTTCGGTAGTATATCCTCTGAACT
C7              CTCAAACAAATGTTTTCAATTGACGAGTTTGGTAGTATATCTTCCGAGCT
                ** **.**:******:*.** ******** ** ** ***** ** **. *

C1              TAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTATTGGAGCTATTT
C2              TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT
C3              TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT
C4              TAACTCTGTTTACCAGGCTGGCTTCCTGGGATTCCTCGTTGGAGCAATTT
C5              GAACTCCATTTACCAGGCCGGCTTCCTGGGCTTCCTCATTGGAGCCATTT
C6              GAATTCAATTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCGATTT
C7              GAATTCAATTTACCAGGCCGGTTTCCTGGGATTCCTCATTGGAGCGATTT
                 ** ** .**** ***** ** *****.**.***** .******* ****

C1              ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC
C2              ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC
C3              ACGGCGGAGTTACACAATCGCGCGTGGCTTATATGAATTTCATGGAGAAC
C4              ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
C5              ATGGAGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
C6              ACGGTGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
C7              ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
                * ** **********************  ** ******************

C1              AACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
C2              AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
C3              AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
C4              AACGAAGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
C5              AACCAGGCGACAGCCTTCAAATCTCACTTTGATGCCAAGAAAAAGCTGCA
C6              AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTTCA
C7              AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTACA
                *** *.** ***** ** ***** *********************** **

C1              AGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCAAATGGGGCTGGC
C2              AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC
C3              AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC
C4              AGATCAATTCACAGTCAACTTCGCCAAAGGCGGTTTCAAATGGGGCTGGC
C5              GGATGAGTTCACAGTCAACTTTGCCAAGGGTGGTTTCAAATGGGGCTGGC
C6              GGACCAATTTACTGTTAACTTTGCCAAAGGCGGCTTTAAATGGGGTTGGC
C7              GGACCAATTTACGGTCAACTTTGCCAAGGGCGGCTTCAAATGGGGCTGGC
                .**  *.** ** ** ***** *****.** ** ** ******** ****

C1              GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACTTGTATGTCG
C2              GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG
C3              GAGTAGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG
C4              GAGTGGGACTTTTTACCACATCCTACCTCGGCATCATCACCTGCATTTCG
C5              GCGTGGGCCTCTTTACCACCTCCTACTTTGGGATCATCACCTGCATGTCG
C6              GAGTGGGACTTTTCACCACTTCCTACTTTGGCATCATTACGTGCATGTCG
C7              GAGTGGGACTTTTTACAACTTCCTACTTCGGCATCATCACCTGCATATCT
                *.**.**.** ** **.** ****** * ** ***** ** ** ** ** 

C1              GTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGCCGCTGGTTCCAT
C2              GTGTACCGTGGAAAATCCTCAATATACGAATACTTGGCCGCTGGCTCCGT
C3              GTGTACCGTGGAAAATCCTCAATTTACGAATACTTGGCCGCTGGTTCCGT
C4              GTGTACCGTGGAAAGTCCTCAATTTATGAGTACTTGGCCGCTGGTTCCAT
C5              GTGTACCGTGGCAAATCCTCGATCTACGAGTACCTGGCCGCCGGTTCCAT
C6              GTGTACCGTGGAAAATCATCTATCTACGAGTACTTGGCCGCTGGATCCGT
C7              GTGTATCGTGGAAAATCGTCGATCTACGAGTACTTGGCCGCAGGTTCCGT
                ***** *****.**.** ** ** ** **.*** ******* ** ***.*

C1              CACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGGGCATGGCGGCAG
C2              CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG
C3              CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG
C4              CACCGGCTCACTTTACAAAATGAATCTTGGTCTGCGGGGCATGGCGGCAG
C5              CACCGGCTCGCTCTACAAGATGAATTTGGGACTGCGCGGCATGGCGGCAG
C6              CACCGGCTCCCTTTACAAAGTAAATCTGGGACTACGGGGTATGGCAGCAG
C7              CACCGGCTCCCTTTACAAAATGAATCTGGGACTGCGAGGCATGGCGGCAG
                ********* ** *****..*.*.* * **:**.** ** *****.****

C1              GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG
C2              GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG
C3              GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGTTG
C4              GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGGTGGTGTAACGTCCCTG
C5              GTGGAATCATTGGAGGCTTCCTGGGCGGAGTGGCTGGCGTGACCTCGCTG
C6              GCGGGATCATTGGTGGCTTCTTGGGCGGAGTCGCTGGAGTCACCTCCCTG
C7              GCGGGATCATTGGCGGCTTCTTGGGCGGAGTGGCTGGAGTCACCTCCCTG
                * **.******** ** *** *******.** * *** ** ** **  **

C1              CTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGTTCGCTACTGGCA
C2              CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA
C3              CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA
C4              CTGCTGATGAAGGCATCCGGGACTTCGATGGAGGAGGTTCGCTACTGGCA
C5              CTGCTGATGAAGGCTTCCGGCACCTCGATGGAGGAGGTGCGCTACTGGCA
C6              CTGCTGATGAAGGCATCCGGCACTTCGATGGAGGAAGTGCGCTACTGGCA
C7              CTACTGATGAAGGCATCCGGCACTTCGATGGAGGAGGTGCGCTATTGGCA
                **.********.**:**.** ** ********.**.** ***** *****

C1              GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
C2              GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
C3              GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
C4              GTACAAATGGCGACTCGATCGCGACGAGAACATTCAACTGGCGTTCAAAA
C5              GTACAAGTGGCGACTCGACCGCGACGAAAACATCCAGCTGGCCTTCAAAA
C6              GTACAAGTGGCGACTGGATCGCGACGAAAACATTCAGCTGGCGTTCAAAA
C7              GTACAAGTGGCGGCTCGATCGCGATGATAACATCCAGCAGGCCTTCAAAA
                ******.*****.** ** ***** ** ***** **.*:*** *******

C1              AACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
C2              AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
C3              AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
C4              AACTGACAGAGGATGAAACCCCAGAACTTTTCAAGGTCCACGACGAAAAA
C5              AGCTGACGGAAGACGAAAACCCAGCGCTCTTCAAGGCGCACGACGAAAAA
C6              AACTGACGGAGGATGAAACCCCTGAGTTGTTTAAGGCCCATGATGAAAAG
C7              AACTGACAGAGGATGAACAACCGGAGCTGTTCAAGGTCCATGACGAAAAG
                *.*****.**.**  **...** *.. * ** ****  ** ** **.**.

C1              ACATCCGAACATGTATCGCTGGACACGATCAAG
C2              ACATCCGAACAGGTATCGCTGGACACGATCAAG
C3              ACATCCGAACAGGTATCGCTGGACACGATCAAG
C4              ACAGCCGAACAGGTATCGCTGGACTCGATCAAG
C5              GTACCCGAAGAGGTGTCCCTGGACTCGGTCAAG
C6              AAATCCTCTGAGGTATCCCTCGACTCGGTCAAG
C7              GTACCCGAACAGGTATCCCTGGACTCGGTCAAG
                . * ** .: * **.** ** ***:**.*****



>C1
ATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
AACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAACAAAACAT
ACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACAGGACTGGAGCGC
CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
TAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTATTGGAGCTATTT
ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC
AACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
AGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCAAATGGGGCTGGC
GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACTTGTATGTCG
GTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGCCGCTGGTTCCAT
CACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGGGCATGGCGGCAG
GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG
CTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGTTCGCTACTGGCA
GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
AACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
ACATCCGAACATGTATCGCTGGACACGATCAAG
>C2
ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT
ACAAGGCATTTCTGGACAGTAAACTACCAGAAGAAACGGGACTGGAGCGC
CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT
ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC
AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC
GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG
GTGTACCGTGGAAAATCCTCAATATACGAATACTTGGCCGCTGGCTCCGT
CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG
GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG
CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA
GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
ACATCCGAACAGGTATCGCTGGACACGATCAAG
>C3
ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC
AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT
ACAAGGCCTTTCTGGACCGTAAACTACCAGAGGAAACGGGACTGGAGCGC
CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT
TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT
ACGGCGGAGTTACACAATCGCGCGTGGCTTATATGAATTTCATGGAGAAC
AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC
GAGTAGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG
GTGTACCGTGGAAAATCCTCAATTTACGAATACTTGGCCGCTGGTTCCGT
CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG
GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGTTG
CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA
GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA
AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA
ACATCCGAACAGGTATCGCTGGACACGATCAAG
>C4
ATGAATTTTCTGTGGAAAGGCCGTCGGTTTCTGATCGCAGGTATCCTGCC
AACATTTGACGGCAGCTCAGACGACATAATCGACAAGGAAAGCAAAACTT
ACAAGGCCTTCCTGGCCAGTAAACCACCAGAGGAAACGGGACTGGAGCGC
CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCGTCCGAACT
TAACTCTGTTTACCAGGCTGGCTTCCTGGGATTCCTCGTTGGAGCAATTT
ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
AACGAAGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA
AGATCAATTCACAGTCAACTTCGCCAAAGGCGGTTTCAAATGGGGCTGGC
GAGTGGGACTTTTTACCACATCCTACCTCGGCATCATCACCTGCATTTCG
GTGTACCGTGGAAAGTCCTCAATTTATGAGTACTTGGCCGCTGGTTCCAT
CACCGGCTCACTTTACAAAATGAATCTTGGTCTGCGGGGCATGGCGGCAG
GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGGTGGTGTAACGTCCCTG
CTGCTGATGAAGGCATCCGGGACTTCGATGGAGGAGGTTCGCTACTGGCA
GTACAAATGGCGACTCGATCGCGACGAGAACATTCAACTGGCGTTCAAAA
AACTGACAGAGGATGAAACCCCAGAACTTTTCAAGGTCCACGACGAAAAA
ACAGCCGAACAGGTATCGCTGGACTCGATCAAG
>C5
ATGAGTTTCTTGTGGAAAGGACGCCGGTTTCTGATCGCCGGGATCCTGCC
GATCATGGAAAACGGCGCCGACGACATAAAGGACAAGGAAAACAAGACCT
ACAAGGCTTTCCTGGCCAGTAAACCGCCGGAGGAAACGGGTCTGGAGCGC
CTCAAACAAATGTTTTCCATCGACGAGTTTGGAAGCATATCCTCCGAGTT
GAACTCCATTTACCAGGCCGGCTTCCTGGGCTTCCTCATTGGAGCCATTT
ATGGAGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
AACCAGGCGACAGCCTTCAAATCTCACTTTGATGCCAAGAAAAAGCTGCA
GGATGAGTTCACAGTCAACTTTGCCAAGGGTGGTTTCAAATGGGGCTGGC
GCGTGGGCCTCTTTACCACCTCCTACTTTGGGATCATCACCTGCATGTCG
GTGTACCGTGGCAAATCCTCGATCTACGAGTACCTGGCCGCCGGTTCCAT
CACCGGCTCGCTCTACAAGATGAATTTGGGACTGCGCGGCATGGCGGCAG
GTGGAATCATTGGAGGCTTCCTGGGCGGAGTGGCTGGCGTGACCTCGCTG
CTGCTGATGAAGGCTTCCGGCACCTCGATGGAGGAGGTGCGCTACTGGCA
GTACAAGTGGCGACTCGACCGCGACGAAAACATCCAGCTGGCCTTCAAAA
AGCTGACGGAAGACGAAAACCCAGCGCTCTTCAAGGCGCACGACGAAAAA
GTACCCGAAGAGGTGTCCCTGGACTCGGTCAAG
>C6
ATGAGTTTCTTGTGGAAAGGACGACGGTTTTTGATTGCCGGCATTCTGCC
AGTCCTAGAACGCGGCGCAGATGACATAGTGGATAAGGAAAACAAGACCT
ACAAGGCATTCCTAGCCAGTAAACCACCAGAGGAAACAGGAATGGAGCGC
CTTAAACATATGTTTACAATCGACGAGTTCGGTAGTATATCCTCTGAACT
GAATTCAATTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCGATTT
ACGGTGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTTCA
GGACCAATTTACTGTTAACTTTGCCAAAGGCGGCTTTAAATGGGGTTGGC
GAGTGGGACTTTTCACCACTTCCTACTTTGGCATCATTACGTGCATGTCG
GTGTACCGTGGAAAATCATCTATCTACGAGTACTTGGCCGCTGGATCCGT
CACCGGCTCCCTTTACAAAGTAAATCTGGGACTACGGGGTATGGCAGCAG
GCGGGATCATTGGTGGCTTCTTGGGCGGAGTCGCTGGAGTCACCTCCCTG
CTGCTGATGAAGGCATCCGGCACTTCGATGGAGGAAGTGCGCTACTGGCA
GTACAAGTGGCGACTGGATCGCGACGAAAACATTCAGCTGGCGTTCAAAA
AACTGACGGAGGATGAAACCCCTGAGTTGTTTAAGGCCCATGATGAAAAG
AAATCCTCTGAGGTATCCCTCGACTCGGTCAAG
>C7
ATGAGTTTTTTGTTGAAAGGACGCCGGTTTTTGATCGCCGGCATCCTGCC
AGCTTTTGAACGCGGCCCAGACGACATAGTGGATAAGGAAAACAAGACTT
ATAAGGCATTCCTGGCCAGTAAACCGCCAGAGGAAACGGGACTGGAGCGC
CTCAAACAAATGTTTTCAATTGACGAGTTTGGTAGTATATCTTCCGAGCT
GAATTCAATTTACCAGGCCGGTTTCCTGGGATTCCTCATTGGAGCGATTT
ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC
AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTACA
GGACCAATTTACGGTCAACTTTGCCAAGGGCGGCTTCAAATGGGGCTGGC
GAGTGGGACTTTTTACAACTTCCTACTTCGGCATCATCACCTGCATATCT
GTGTATCGTGGAAAATCGTCGATCTACGAGTACTTGGCCGCAGGTTCCGT
CACCGGCTCCCTTTACAAAATGAATCTGGGACTGCGAGGCATGGCGGCAG
GCGGGATCATTGGCGGCTTCTTGGGCGGAGTGGCTGGAGTCACCTCCCTG
CTACTGATGAAGGCATCCGGCACTTCGATGGAGGAGGTGCGCTATTGGCA
GTACAAGTGGCGGCTCGATCGCGATGATAACATCCAGCAGGCCTTCAAAA
AACTGACAGAGGATGAACAACCGGAGCTGTTCAAGGTCCATGACGAAAAG
GTACCCGAACAGGTATCCCTGGACTCGGTCAAG
>C1
MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK
TSEHVSLDTIK
>C2
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C3
MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER
LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK
TSEQVSLDTIK
>C4
MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER
LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN
NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK
TAEQVSLDSIK
>C5
MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK
VPEEVSLDSVK
>C6
MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER
LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS
VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK
KSSEVSLDSVK
>C7
MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER
LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN
NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS
VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL
LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK
VPEQVSLDSVK


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 7 taxa and 783 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Taxon 6 -> C6
      Taxon 7 -> C7
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1480088178
      Setting output file names to "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 1789361399
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 7160712863
      Seed = 1990334525
      Swapseed = 1480088178
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 34 unique site patterns
      Division 2 has 21 unique site patterns
      Division 3 has 97 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -3057.137270 -- -24.557203
         Chain 2 -- -3011.521253 -- -24.557203
         Chain 3 -- -2986.654542 -- -24.557203
         Chain 4 -- -2981.230552 -- -24.557203

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -3046.022622 -- -24.557203
         Chain 2 -- -2980.749586 -- -24.557203
         Chain 3 -- -3045.756777 -- -24.557203
         Chain 4 -- -3039.644610 -- -24.557203


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-3057.137] (-3011.521) (-2986.655) (-2981.231) * [-3046.023] (-2980.750) (-3045.757) (-3039.645) 
        500 -- (-2524.371) (-2516.998) [-2494.752] (-2530.720) * (-2520.174) (-2512.939) (-2509.779) [-2490.629] -- 0:00:00
       1000 -- (-2495.223) (-2474.944) [-2458.521] (-2513.603) * (-2475.225) [-2466.106] (-2488.624) (-2454.309) -- 0:00:00
       1500 -- (-2463.732) [-2427.933] (-2428.605) (-2493.559) * [-2451.642] (-2434.593) (-2459.888) (-2438.230) -- 0:00:00
       2000 -- (-2441.026) [-2426.067] (-2421.696) (-2461.875) * (-2425.965) (-2425.446) [-2408.331] (-2422.146) -- 0:08:19
       2500 -- (-2414.469) (-2429.750) [-2409.187] (-2442.004) * (-2418.130) (-2405.069) [-2408.019] (-2414.582) -- 0:06:39
       3000 -- (-2407.913) (-2419.277) [-2403.094] (-2436.109) * (-2409.233) [-2404.457] (-2411.778) (-2405.373) -- 0:05:32
       3500 -- (-2406.601) (-2416.457) [-2399.456] (-2420.591) * (-2408.937) [-2401.991] (-2405.598) (-2414.136) -- 0:04:44
       4000 -- (-2403.181) (-2412.561) [-2407.076] (-2411.471) * (-2405.662) (-2406.628) (-2404.562) [-2400.581] -- 0:04:09
       4500 -- (-2402.834) (-2411.243) (-2408.221) [-2401.938] * [-2401.084] (-2402.360) (-2407.405) (-2404.221) -- 0:07:22
       5000 -- (-2401.913) (-2407.668) [-2406.744] (-2406.550) * (-2399.602) (-2407.684) (-2403.549) [-2397.425] -- 0:06:38

      Average standard deviation of split frequencies: 0.062854

       5500 -- (-2406.528) (-2406.343) (-2414.453) [-2399.565] * (-2402.698) [-2401.671] (-2411.516) (-2403.459) -- 0:06:01
       6000 -- (-2400.734) (-2416.677) (-2404.744) [-2398.452] * [-2406.848] (-2404.475) (-2405.294) (-2403.559) -- 0:05:31
       6500 -- [-2406.921] (-2401.603) (-2401.355) (-2402.402) * (-2406.812) [-2401.616] (-2403.619) (-2412.524) -- 0:05:05
       7000 -- (-2405.086) (-2404.102) [-2398.616] (-2401.545) * (-2404.481) [-2405.067] (-2408.722) (-2412.129) -- 0:04:43
       7500 -- (-2399.047) (-2396.464) (-2404.842) [-2396.115] * (-2405.866) (-2401.829) (-2406.906) [-2403.132] -- 0:06:37
       8000 -- (-2402.521) (-2401.235) [-2402.788] (-2401.858) * (-2407.878) [-2401.938] (-2405.870) (-2411.490) -- 0:06:12
       8500 -- (-2401.264) (-2414.232) [-2403.607] (-2403.645) * (-2407.227) (-2409.422) [-2405.732] (-2402.077) -- 0:05:49
       9000 -- (-2402.320) (-2406.935) (-2395.187) [-2400.281] * [-2410.939] (-2405.914) (-2407.093) (-2406.577) -- 0:05:30
       9500 -- (-2402.048) (-2400.399) (-2402.538) [-2401.608] * (-2409.796) [-2408.425] (-2404.418) (-2410.541) -- 0:05:12
      10000 -- (-2405.930) (-2406.794) (-2404.355) [-2398.616] * [-2399.539] (-2404.657) (-2408.531) (-2404.119) -- 0:06:36

      Average standard deviation of split frequencies: 0.035355

      10500 -- (-2402.698) (-2399.489) [-2398.322] (-2403.711) * (-2406.485) [-2401.396] (-2401.948) (-2405.836) -- 0:06:16
      11000 -- (-2398.242) (-2405.632) [-2407.608] (-2400.282) * (-2403.267) [-2403.072] (-2397.443) (-2403.772) -- 0:05:59
      11500 -- [-2404.760] (-2398.306) (-2411.455) (-2404.057) * (-2406.316) [-2401.168] (-2405.039) (-2407.874) -- 0:05:43
      12000 -- [-2404.930] (-2406.390) (-2402.269) (-2411.104) * [-2401.468] (-2406.830) (-2415.730) (-2408.121) -- 0:05:29
      12500 -- (-2410.313) (-2398.449) (-2405.502) [-2406.779] * [-2404.772] (-2401.121) (-2416.619) (-2409.017) -- 0:05:16
      13000 -- [-2403.806] (-2410.161) (-2406.973) (-2403.630) * (-2396.706) [-2402.134] (-2405.453) (-2403.138) -- 0:06:19
      13500 -- (-2409.954) (-2407.238) [-2407.004] (-2403.914) * (-2404.436) (-2400.773) (-2404.945) [-2402.522] -- 0:06:05
      14000 -- (-2404.179) (-2399.203) [-2399.042] (-2403.687) * (-2402.795) (-2404.316) (-2411.945) [-2402.690] -- 0:05:52
      14500 -- (-2401.780) (-2403.138) [-2398.612] (-2406.233) * (-2401.531) (-2411.184) (-2414.709) [-2404.300] -- 0:05:39
      15000 -- (-2405.366) [-2405.245] (-2400.379) (-2410.826) * (-2399.468) (-2405.455) [-2396.417] (-2409.103) -- 0:05:28

      Average standard deviation of split frequencies: 0.000000

      15500 -- (-2407.427) (-2414.800) (-2408.142) [-2405.777] * (-2407.232) [-2402.040] (-2400.719) (-2406.722) -- 0:06:21
      16000 -- (-2400.308) [-2413.403] (-2401.236) (-2404.666) * [-2402.524] (-2399.305) (-2407.479) (-2408.567) -- 0:06:09
      16500 -- (-2395.780) [-2403.432] (-2401.565) (-2402.978) * [-2403.293] (-2400.295) (-2400.582) (-2406.182) -- 0:05:57
      17000 -- (-2402.375) (-2406.567) (-2403.919) [-2402.004] * [-2401.236] (-2400.438) (-2402.121) (-2412.639) -- 0:05:46
      17500 -- (-2397.460) (-2400.294) [-2398.252] (-2406.800) * (-2405.753) [-2400.623] (-2404.127) (-2413.447) -- 0:05:36
      18000 -- [-2404.735] (-2399.658) (-2409.189) (-2401.292) * [-2405.943] (-2409.753) (-2401.381) (-2413.072) -- 0:05:27
      18500 -- [-2404.435] (-2402.452) (-2398.062) (-2400.590) * (-2400.844) (-2405.023) [-2402.115] (-2403.807) -- 0:06:11
      19000 -- [-2408.167] (-2400.548) (-2406.751) (-2399.218) * (-2401.694) (-2404.443) (-2407.314) [-2406.532] -- 0:06:01
      19500 -- [-2400.571] (-2405.956) (-2405.649) (-2400.360) * (-2402.637) (-2406.372) (-2403.229) [-2407.409] -- 0:05:51
      20000 -- (-2403.187) (-2407.668) (-2399.443) [-2398.982] * (-2403.679) (-2406.223) (-2403.908) [-2404.157] -- 0:05:43

      Average standard deviation of split frequencies: 0.027372

      20500 -- (-2402.761) (-2399.534) [-2399.514] (-2401.080) * (-2410.633) (-2414.180) (-2404.510) [-2402.254] -- 0:05:34
      21000 -- (-2405.613) [-2401.401] (-2402.401) (-2399.406) * (-2409.781) (-2404.630) (-2407.890) [-2397.646] -- 0:06:12
      21500 -- (-2407.672) (-2404.674) [-2406.924] (-2400.564) * (-2406.715) (-2400.108) [-2411.078] (-2405.934) -- 0:06:04
      22000 -- [-2407.107] (-2405.269) (-2403.728) (-2401.326) * [-2402.538] (-2409.525) (-2405.097) (-2403.387) -- 0:05:55
      22500 -- (-2408.321) [-2404.427] (-2406.475) (-2403.155) * [-2401.847] (-2405.869) (-2406.742) (-2404.024) -- 0:05:47
      23000 -- (-2407.253) (-2413.203) (-2407.680) [-2401.536] * (-2403.233) (-2401.456) (-2401.187) [-2404.934] -- 0:05:39
      23500 -- (-2402.167) [-2414.384] (-2401.766) (-2398.800) * (-2402.756) (-2401.234) [-2402.929] (-2406.085) -- 0:05:32
      24000 -- [-2397.983] (-2404.442) (-2397.525) (-2404.029) * (-2412.847) [-2397.536] (-2401.777) (-2401.055) -- 0:06:06
      24500 -- [-2401.067] (-2398.431) (-2405.434) (-2405.974) * (-2403.412) (-2413.023) [-2408.230] (-2398.739) -- 0:05:58
      25000 -- [-2399.387] (-2411.859) (-2405.390) (-2406.199) * (-2403.964) (-2400.856) [-2398.611] (-2406.423) -- 0:05:51

      Average standard deviation of split frequencies: 0.014505

      25500 -- [-2401.254] (-2405.520) (-2401.085) (-2403.462) * (-2408.760) (-2411.608) [-2400.676] (-2402.724) -- 0:05:43
      26000 -- (-2405.128) (-2409.914) [-2403.345] (-2400.095) * (-2407.024) (-2404.076) (-2395.045) [-2401.577] -- 0:05:37
      26500 -- (-2401.581) [-2402.482] (-2404.027) (-2408.046) * [-2398.165] (-2410.276) (-2410.636) (-2404.321) -- 0:05:30
      27000 -- [-2402.506] (-2409.182) (-2409.898) (-2406.950) * (-2407.700) [-2400.853] (-2405.908) (-2404.640) -- 0:06:00
      27500 -- [-2401.428] (-2407.523) (-2414.620) (-2402.796) * [-2406.845] (-2399.373) (-2399.281) (-2404.664) -- 0:05:53
      28000 -- [-2397.706] (-2412.526) (-2403.361) (-2404.676) * (-2410.663) (-2400.843) [-2402.034] (-2401.771) -- 0:05:47
      28500 -- (-2401.080) (-2404.070) (-2401.866) [-2401.342] * (-2408.259) (-2410.848) [-2401.198] (-2403.282) -- 0:05:40
      29000 -- [-2402.122] (-2404.774) (-2401.483) (-2404.641) * (-2405.813) [-2399.144] (-2407.117) (-2409.667) -- 0:05:34
      29500 -- [-2395.693] (-2401.748) (-2402.155) (-2408.245) * (-2408.429) (-2406.890) (-2405.959) [-2412.618] -- 0:06:01
      30000 -- (-2404.257) (-2411.898) [-2399.206] (-2407.002) * (-2406.304) (-2408.333) [-2399.049] (-2400.969) -- 0:05:55

      Average standard deviation of split frequencies: 0.036893

      30500 -- (-2404.348) (-2405.099) [-2403.213] (-2407.101) * (-2401.403) (-2410.527) (-2404.030) [-2398.714] -- 0:05:49
      31000 -- (-2405.388) (-2402.202) [-2401.759] (-2410.127) * (-2409.233) [-2408.039] (-2399.140) (-2404.755) -- 0:05:43
      31500 -- (-2404.062) (-2406.066) [-2406.339] (-2400.085) * (-2404.140) (-2405.563) [-2401.654] (-2408.939) -- 0:05:38
      32000 -- (-2405.459) (-2406.613) [-2412.781] (-2396.141) * (-2402.924) [-2404.533] (-2411.086) (-2404.443) -- 0:05:32
      32500 -- (-2407.888) [-2410.909] (-2407.022) (-2405.356) * (-2405.823) [-2400.999] (-2406.417) (-2403.541) -- 0:05:57
      33000 -- (-2401.203) [-2405.362] (-2407.011) (-2410.665) * [-2403.608] (-2399.473) (-2406.880) (-2401.954) -- 0:05:51
      33500 -- (-2404.325) (-2410.773) (-2397.613) [-2403.592] * (-2400.158) (-2398.760) (-2407.168) [-2401.778] -- 0:05:46
      34000 -- (-2403.281) (-2398.974) [-2403.957] (-2408.948) * [-2401.996] (-2404.571) (-2405.722) (-2408.462) -- 0:05:40
      34500 -- (-2409.534) [-2405.479] (-2404.824) (-2408.030) * (-2421.142) (-2401.586) (-2401.318) [-2403.815] -- 0:05:35
      35000 -- (-2404.420) (-2400.125) (-2403.389) [-2408.519] * (-2404.030) [-2400.401] (-2399.108) (-2399.091) -- 0:05:30

      Average standard deviation of split frequencies: 0.023570

      35500 -- (-2404.973) (-2401.460) (-2405.270) [-2401.582] * (-2406.340) [-2398.412] (-2404.984) (-2399.744) -- 0:05:53
      36000 -- (-2402.549) (-2401.347) [-2396.822] (-2398.657) * (-2409.811) (-2402.369) [-2406.304] (-2405.916) -- 0:05:48
      36500 -- (-2409.833) [-2412.464] (-2401.503) (-2405.455) * (-2407.451) [-2402.420] (-2404.917) (-2410.234) -- 0:05:43
      37000 -- (-2400.717) [-2404.517] (-2400.845) (-2407.543) * (-2407.024) (-2403.280) (-2401.245) [-2404.972] -- 0:05:38
      37500 -- (-2400.346) [-2404.174] (-2405.195) (-2405.451) * [-2401.232] (-2410.236) (-2405.317) (-2403.279) -- 0:05:33
      38000 -- [-2410.464] (-2401.789) (-2407.788) (-2406.256) * (-2398.883) (-2401.010) (-2404.216) [-2404.634] -- 0:05:54
      38500 -- (-2405.054) (-2414.956) [-2397.503] (-2402.487) * [-2403.085] (-2401.223) (-2403.479) (-2397.727) -- 0:05:49
      39000 -- (-2403.788) (-2400.990) [-2402.537] (-2405.569) * (-2399.217) [-2399.347] (-2402.542) (-2409.367) -- 0:05:44
      39500 -- [-2397.034] (-2401.974) (-2410.950) (-2400.378) * (-2408.496) (-2405.849) [-2401.222] (-2402.709) -- 0:05:40
      40000 -- (-2409.518) (-2403.037) [-2403.570] (-2406.467) * (-2401.527) [-2400.639] (-2403.905) (-2408.304) -- 0:05:36

      Average standard deviation of split frequencies: 0.020865

      40500 -- (-2402.144) (-2397.925) [-2399.693] (-2408.342) * [-2400.917] (-2398.013) (-2405.654) (-2405.003) -- 0:05:31
      41000 -- (-2407.185) [-2398.580] (-2407.543) (-2407.192) * [-2405.730] (-2404.410) (-2401.040) (-2401.318) -- 0:05:50
      41500 -- (-2400.389) (-2398.465) [-2401.812] (-2407.320) * (-2405.736) [-2403.129] (-2408.279) (-2401.362) -- 0:05:46
      42000 -- (-2399.165) [-2400.301] (-2398.703) (-2405.716) * (-2400.768) [-2400.675] (-2401.771) (-2399.779) -- 0:05:42
      42500 -- (-2399.560) (-2410.888) [-2402.752] (-2402.291) * [-2401.388] (-2395.870) (-2396.937) (-2397.682) -- 0:05:37
      43000 -- (-2399.510) (-2403.237) [-2399.426] (-2406.371) * [-2399.967] (-2398.535) (-2401.805) (-2401.966) -- 0:05:33
      43500 -- (-2401.250) (-2411.028) (-2402.584) [-2403.481] * [-2402.129] (-2398.381) (-2401.646) (-2399.110) -- 0:05:51
      44000 -- [-2404.487] (-2401.126) (-2404.821) (-2403.580) * (-2403.306) [-2406.467] (-2407.708) (-2402.574) -- 0:05:47
      44500 -- [-2400.580] (-2411.349) (-2403.320) (-2400.490) * (-2409.200) (-2398.652) [-2400.960] (-2403.548) -- 0:05:43
      45000 -- (-2404.692) (-2403.173) (-2404.915) [-2402.567] * (-2404.185) (-2403.561) (-2398.509) [-2402.005] -- 0:05:39

      Average standard deviation of split frequencies: 0.018446

      45500 -- [-2400.407] (-2401.340) (-2405.715) (-2405.943) * (-2400.670) [-2401.701] (-2401.368) (-2402.008) -- 0:05:35
      46000 -- (-2404.085) [-2403.234] (-2400.539) (-2406.120) * (-2402.252) (-2408.233) [-2401.281] (-2408.469) -- 0:05:31
      46500 -- (-2396.984) [-2401.375] (-2398.427) (-2404.194) * (-2397.882) (-2405.199) (-2411.856) [-2401.257] -- 0:05:48
      47000 -- (-2400.727) (-2399.492) [-2400.595] (-2416.545) * (-2399.242) (-2405.196) (-2409.127) [-2399.770] -- 0:05:44
      47500 -- [-2400.320] (-2398.812) (-2399.692) (-2404.429) * (-2401.231) (-2407.674) [-2402.124] (-2405.505) -- 0:05:40
      48000 -- (-2399.229) (-2399.906) (-2399.465) [-2401.207] * (-2404.814) (-2407.682) [-2400.481] (-2407.733) -- 0:05:37
      48500 -- (-2405.302) (-2400.956) [-2403.713] (-2405.514) * (-2400.966) (-2405.126) (-2403.588) [-2403.756] -- 0:05:33
      49000 -- (-2401.592) [-2403.245] (-2402.339) (-2402.034) * (-2398.884) (-2409.353) [-2404.714] (-2409.901) -- 0:05:29
      49500 -- (-2399.290) (-2404.128) (-2407.056) [-2402.570] * (-2404.009) (-2404.070) [-2405.614] (-2410.600) -- 0:05:45
      50000 -- (-2407.351) [-2398.448] (-2406.337) (-2402.123) * (-2406.990) (-2420.398) [-2398.668] (-2404.663) -- 0:05:42

      Average standard deviation of split frequencies: 0.020469

      50500 -- (-2406.445) (-2408.271) [-2403.682] (-2406.163) * (-2397.879) (-2404.206) (-2406.220) [-2404.373] -- 0:05:38
      51000 -- (-2412.231) (-2404.780) [-2402.846] (-2409.439) * [-2404.500] (-2400.846) (-2401.871) (-2402.674) -- 0:05:34
      51500 -- (-2404.253) [-2399.277] (-2418.644) (-2407.558) * (-2398.810) (-2411.444) [-2401.829] (-2402.043) -- 0:05:31
      52000 -- (-2405.774) (-2403.314) (-2411.044) [-2398.117] * (-2405.656) (-2403.946) (-2403.090) [-2403.212] -- 0:05:28
      52500 -- (-2407.112) [-2397.888] (-2410.740) (-2398.901) * [-2399.388] (-2408.117) (-2406.027) (-2405.204) -- 0:05:42
      53000 -- (-2403.730) (-2408.742) (-2413.030) [-2407.760] * (-2408.270) (-2402.566) [-2402.483] (-2401.376) -- 0:05:39
      53500 -- [-2407.069] (-2410.126) (-2409.384) (-2408.658) * (-2406.698) [-2401.688] (-2405.288) (-2407.856) -- 0:05:36
      54000 -- (-2406.686) (-2405.736) [-2410.702] (-2412.589) * [-2397.627] (-2402.884) (-2404.774) (-2408.638) -- 0:05:32
      54500 -- [-2404.115] (-2399.021) (-2402.835) (-2403.968) * (-2402.937) (-2405.854) [-2395.682] (-2404.555) -- 0:05:29
      55000 -- (-2401.265) (-2402.629) (-2408.647) [-2402.840] * [-2406.794] (-2403.858) (-2401.381) (-2405.971) -- 0:05:43

      Average standard deviation of split frequencies: 0.025254

      55500 -- (-2399.099) (-2409.114) (-2402.642) [-2406.024] * (-2400.793) (-2399.631) (-2406.246) [-2400.046] -- 0:05:40
      56000 -- (-2398.819) [-2402.732] (-2400.987) (-2415.870) * (-2408.044) [-2402.317] (-2408.434) (-2408.546) -- 0:05:37
      56500 -- [-2399.790] (-2402.172) (-2411.877) (-2402.802) * (-2402.859) [-2401.166] (-2407.597) (-2403.229) -- 0:05:33
      57000 -- [-2401.652] (-2401.515) (-2407.738) (-2401.096) * (-2404.615) [-2400.964] (-2411.612) (-2397.804) -- 0:05:30
      57500 -- [-2403.566] (-2401.849) (-2404.096) (-2402.367) * [-2401.796] (-2405.280) (-2405.670) (-2398.703) -- 0:05:27
      58000 -- (-2405.434) (-2409.509) (-2408.862) [-2397.958] * (-2399.372) [-2402.444] (-2405.212) (-2403.355) -- 0:05:41
      58500 -- (-2410.069) [-2405.331] (-2408.095) (-2399.014) * (-2404.735) (-2403.734) (-2398.974) [-2399.492] -- 0:05:37
      59000 -- (-2408.581) [-2399.561] (-2416.062) (-2408.856) * (-2402.479) [-2400.857] (-2401.866) (-2406.239) -- 0:05:34
      59500 -- (-2405.900) (-2407.876) (-2404.952) [-2397.477] * (-2406.304) (-2405.906) (-2405.820) [-2402.583] -- 0:05:31
      60000 -- (-2402.741) [-2401.655] (-2411.751) (-2400.140) * (-2403.691) (-2404.427) (-2400.740) [-2408.567] -- 0:05:29

      Average standard deviation of split frequencies: 0.023311

      60500 -- (-2399.668) (-2399.628) [-2402.901] (-2399.949) * (-2408.757) [-2404.569] (-2408.226) (-2404.087) -- 0:05:26
      61000 -- (-2400.907) [-2404.786] (-2406.051) (-2410.565) * (-2418.905) (-2407.463) (-2404.526) [-2405.824] -- 0:05:38
      61500 -- (-2398.453) (-2406.566) (-2401.415) [-2401.966] * (-2408.538) (-2409.276) (-2398.103) [-2408.692] -- 0:05:35
      62000 -- [-2401.277] (-2410.524) (-2409.476) (-2410.090) * (-2405.700) [-2404.848] (-2403.237) (-2401.612) -- 0:05:32
      62500 -- (-2400.605) [-2404.243] (-2404.712) (-2407.542) * (-2414.054) (-2403.065) (-2403.724) [-2398.225] -- 0:05:30
      63000 -- (-2406.174) (-2400.713) (-2406.502) [-2405.309] * (-2411.213) (-2406.454) (-2404.667) [-2401.458] -- 0:05:27
      63500 -- (-2411.792) [-2407.004] (-2399.432) (-2406.765) * (-2403.847) (-2407.763) (-2399.183) [-2405.972] -- 0:05:39
      64000 -- [-2400.883] (-2403.824) (-2402.368) (-2406.798) * [-2400.349] (-2405.522) (-2405.937) (-2404.282) -- 0:05:36
      64500 -- (-2403.000) [-2399.668] (-2409.552) (-2405.647) * [-2404.851] (-2408.819) (-2404.477) (-2408.111) -- 0:05:33
      65000 -- (-2410.271) (-2405.376) (-2402.412) [-2401.276] * (-2401.095) (-2412.873) [-2402.095] (-2402.230) -- 0:05:30

      Average standard deviation of split frequencies: 0.014285

      65500 -- [-2401.034] (-2407.558) (-2395.659) (-2409.158) * (-2398.326) [-2408.187] (-2402.895) (-2397.637) -- 0:05:28
      66000 -- (-2409.053) [-2405.485] (-2396.215) (-2406.269) * (-2403.800) (-2404.855) (-2405.743) [-2400.946] -- 0:05:25
      66500 -- (-2405.164) (-2400.297) [-2395.580] (-2397.881) * [-2399.113] (-2399.516) (-2398.656) (-2400.910) -- 0:05:36
      67000 -- [-2405.797] (-2404.651) (-2401.310) (-2402.144) * (-2399.187) (-2397.826) (-2406.282) [-2399.677] -- 0:05:34
      67500 -- (-2413.959) (-2400.915) [-2404.532] (-2404.400) * (-2399.601) (-2402.190) (-2407.382) [-2400.559] -- 0:05:31
      68000 -- [-2402.632] (-2410.718) (-2400.945) (-2412.231) * (-2406.727) (-2399.811) (-2404.640) [-2401.280] -- 0:05:28
      68500 -- (-2399.395) (-2402.758) (-2403.599) [-2400.547] * [-2408.294] (-2407.760) (-2406.040) (-2398.909) -- 0:05:26
      69000 -- (-2402.759) (-2404.433) [-2402.623] (-2398.233) * [-2402.295] (-2402.434) (-2402.425) (-2403.640) -- 0:05:23
      69500 -- (-2396.141) (-2403.437) (-2404.822) [-2398.682] * (-2400.971) (-2402.724) (-2403.116) [-2403.369] -- 0:05:34
      70000 -- (-2400.147) (-2401.124) [-2399.952] (-2402.421) * (-2411.898) (-2402.803) (-2409.428) [-2404.667] -- 0:05:32

      Average standard deviation of split frequencies: 0.021347

      70500 -- [-2402.930] (-2405.222) (-2398.719) (-2396.973) * (-2407.905) (-2409.846) [-2401.413] (-2400.375) -- 0:05:29
      71000 -- (-2400.918) (-2401.837) [-2404.419] (-2399.595) * (-2412.849) (-2401.333) [-2403.236] (-2406.707) -- 0:05:27
      71500 -- (-2403.201) (-2407.344) [-2399.648] (-2406.796) * (-2402.688) (-2403.705) [-2407.631] (-2409.254) -- 0:05:24
      72000 -- (-2401.798) (-2414.377) (-2405.803) [-2403.725] * (-2400.866) [-2402.120] (-2401.355) (-2401.489) -- 0:05:22
      72500 -- (-2412.984) [-2399.171] (-2403.655) (-2408.166) * (-2406.186) [-2398.914] (-2407.757) (-2403.978) -- 0:05:32
      73000 -- (-2400.980) (-2404.601) (-2408.622) [-2403.305] * (-2405.255) (-2402.250) (-2410.327) [-2402.205] -- 0:05:30
      73500 -- (-2412.365) (-2408.960) [-2403.327] (-2404.854) * [-2400.088] (-2401.277) (-2407.498) (-2409.031) -- 0:05:27
      74000 -- (-2406.815) (-2397.123) (-2399.671) [-2404.496] * (-2408.637) [-2404.459] (-2406.516) (-2408.385) -- 0:05:25
      74500 -- (-2410.863) [-2397.303] (-2409.590) (-2406.742) * [-2402.822] (-2400.496) (-2405.961) (-2411.273) -- 0:05:22
      75000 -- (-2404.036) (-2402.003) (-2401.214) [-2405.418] * [-2405.317] (-2405.216) (-2406.107) (-2404.691) -- 0:05:33

      Average standard deviation of split frequencies: 0.014886

      75500 -- (-2401.910) [-2402.505] (-2402.990) (-2407.964) * (-2399.516) (-2404.449) (-2407.579) [-2398.728] -- 0:05:30
      76000 -- (-2401.233) (-2400.096) (-2403.321) [-2408.610] * (-2405.123) (-2398.127) [-2404.137] (-2406.454) -- 0:05:28
      76500 -- (-2399.128) [-2399.674] (-2410.198) (-2406.132) * (-2402.957) [-2397.365] (-2400.310) (-2403.172) -- 0:05:25
      77000 -- (-2404.803) [-2406.253] (-2409.897) (-2401.079) * (-2402.716) [-2399.242] (-2400.223) (-2401.011) -- 0:05:23
      77500 -- [-2404.832] (-2406.801) (-2415.711) (-2399.540) * (-2408.277) [-2400.762] (-2410.646) (-2407.601) -- 0:05:21
      78000 -- (-2405.737) (-2410.978) (-2408.480) [-2397.351] * (-2406.086) (-2403.728) (-2405.722) [-2400.125] -- 0:05:30
      78500 -- (-2400.679) (-2412.014) [-2406.806] (-2413.195) * (-2401.733) [-2404.479] (-2407.260) (-2400.598) -- 0:05:28
      79000 -- (-2404.895) (-2409.185) [-2401.273] (-2403.176) * (-2400.014) (-2405.206) (-2415.514) [-2402.659] -- 0:05:26
      79500 -- (-2408.455) (-2413.536) (-2403.070) [-2406.816] * (-2407.381) (-2406.384) (-2415.923) [-2403.169] -- 0:05:24
      80000 -- (-2402.459) (-2404.849) [-2405.169] (-2402.481) * (-2401.238) (-2407.419) [-2405.740] (-2406.176) -- 0:05:22

      Average standard deviation of split frequencies: 0.011688

      80500 -- (-2409.635) (-2407.325) (-2404.951) [-2399.039] * (-2404.552) [-2401.041] (-2416.191) (-2406.224) -- 0:05:19
      81000 -- [-2402.061] (-2402.284) (-2397.123) (-2397.686) * (-2403.760) [-2408.079] (-2404.123) (-2400.203) -- 0:05:29
      81500 -- [-2405.034] (-2412.024) (-2401.605) (-2405.737) * (-2396.852) (-2403.137) (-2404.009) [-2399.777] -- 0:05:26
      82000 -- [-2408.196] (-2404.438) (-2412.319) (-2403.831) * (-2406.324) [-2403.057] (-2408.683) (-2403.473) -- 0:05:24
      82500 -- (-2401.227) [-2404.929] (-2413.054) (-2399.145) * (-2400.294) (-2411.143) [-2404.397] (-2403.364) -- 0:05:22
      83000 -- [-2407.279] (-2415.764) (-2407.264) (-2408.151) * [-2400.194] (-2413.216) (-2410.342) (-2400.398) -- 0:05:20
      83500 -- (-2399.383) [-2406.087] (-2403.143) (-2406.327) * (-2404.067) (-2418.781) (-2403.797) [-2404.077] -- 0:05:29
      84000 -- (-2399.412) [-2406.983] (-2406.792) (-2402.204) * (-2400.859) (-2403.750) (-2408.508) [-2410.255] -- 0:05:27
      84500 -- (-2407.258) [-2402.346] (-2408.358) (-2401.993) * [-2407.672] (-2399.394) (-2403.201) (-2401.943) -- 0:05:25
      85000 -- [-2404.308] (-2403.952) (-2406.114) (-2400.447) * (-2406.219) (-2402.097) [-2405.347] (-2406.003) -- 0:05:22

      Average standard deviation of split frequencies: 0.004385

      85500 -- [-2403.306] (-2413.068) (-2409.739) (-2400.252) * (-2410.243) [-2398.182] (-2403.425) (-2407.348) -- 0:05:20
      86000 -- (-2405.396) (-2402.995) (-2399.253) [-2401.341] * (-2404.363) [-2397.161] (-2400.827) (-2401.799) -- 0:05:18
      86500 -- (-2406.383) (-2404.265) (-2401.987) [-2408.485] * [-2396.642] (-2400.199) (-2406.662) (-2405.080) -- 0:05:27
      87000 -- (-2401.790) (-2404.069) [-2398.715] (-2401.160) * (-2398.410) [-2400.291] (-2405.804) (-2401.663) -- 0:05:25
      87500 -- (-2400.349) (-2410.284) (-2406.613) [-2405.631] * [-2402.763] (-2399.253) (-2401.946) (-2399.527) -- 0:05:23
      88000 -- [-2396.907] (-2409.094) (-2402.383) (-2406.526) * (-2401.888) [-2402.975] (-2414.043) (-2401.858) -- 0:05:21
      88500 -- [-2404.252] (-2404.132) (-2402.906) (-2412.951) * (-2397.512) [-2406.543] (-2399.828) (-2404.482) -- 0:05:19
      89000 -- (-2407.923) [-2401.153] (-2403.116) (-2405.062) * (-2401.913) [-2405.503] (-2394.019) (-2399.622) -- 0:05:17
      89500 -- [-2399.545] (-2405.295) (-2410.838) (-2398.146) * [-2397.236] (-2408.712) (-2403.192) (-2410.221) -- 0:05:25
      90000 -- (-2409.921) (-2400.660) (-2406.728) [-2397.789] * (-2399.868) [-2402.000] (-2407.530) (-2409.778) -- 0:05:23

      Average standard deviation of split frequencies: 0.002080

      90500 -- (-2405.632) (-2397.497) (-2407.219) [-2401.077] * (-2402.598) [-2411.951] (-2410.448) (-2403.416) -- 0:05:21
      91000 -- [-2406.481] (-2403.630) (-2417.617) (-2404.998) * (-2404.275) (-2415.331) [-2408.535] (-2406.627) -- 0:05:19
      91500 -- [-2403.120] (-2400.326) (-2404.843) (-2402.759) * [-2408.792] (-2401.243) (-2411.793) (-2407.198) -- 0:05:17
      92000 -- (-2401.356) (-2410.578) (-2401.889) [-2405.541] * (-2404.274) [-2404.910] (-2412.226) (-2413.301) -- 0:05:25
      92500 -- [-2402.333] (-2407.086) (-2407.236) (-2399.645) * (-2400.185) (-2407.656) [-2403.155] (-2410.100) -- 0:05:23
      93000 -- [-2400.676] (-2409.124) (-2411.818) (-2403.369) * (-2405.295) (-2401.856) [-2403.868] (-2406.977) -- 0:05:21
      93500 -- (-2409.302) (-2411.726) (-2404.398) [-2398.711] * (-2402.074) (-2407.469) (-2398.621) [-2405.809] -- 0:05:19
      94000 -- [-2409.240] (-2403.235) (-2398.415) (-2404.793) * (-2405.079) (-2399.499) [-2404.028] (-2401.989) -- 0:05:18
      94500 -- (-2407.534) (-2403.051) (-2400.598) [-2400.172] * (-2402.109) (-2405.612) (-2403.616) [-2400.282] -- 0:05:16
      95000 -- (-2399.158) (-2397.449) [-2400.721] (-2400.421) * (-2407.549) (-2400.542) (-2407.446) [-2400.397] -- 0:05:23

      Average standard deviation of split frequencies: 0.005893

      95500 -- (-2396.072) [-2403.707] (-2402.971) (-2401.183) * (-2400.038) [-2398.798] (-2402.544) (-2407.262) -- 0:05:22
      96000 -- [-2399.304] (-2403.140) (-2406.152) (-2408.069) * (-2400.759) [-2398.734] (-2409.954) (-2401.462) -- 0:05:20
      96500 -- (-2402.895) [-2406.922] (-2401.678) (-2400.840) * [-2407.811] (-2411.487) (-2408.012) (-2408.773) -- 0:05:18
      97000 -- (-2400.563) (-2405.753) (-2407.527) [-2399.877] * [-2406.355] (-2398.380) (-2409.446) (-2400.532) -- 0:05:16
      97500 -- (-2403.032) (-2403.824) (-2404.331) [-2405.313] * [-2404.156] (-2402.402) (-2408.613) (-2406.573) -- 0:05:14
      98000 -- [-2400.905] (-2403.918) (-2414.970) (-2398.164) * (-2404.771) (-2406.897) [-2404.050] (-2408.576) -- 0:05:22
      98500 -- (-2404.430) [-2400.706] (-2407.755) (-2405.747) * [-2406.900] (-2408.323) (-2402.137) (-2407.115) -- 0:05:20
      99000 -- (-2406.559) (-2407.117) (-2404.802) [-2398.006] * (-2414.173) (-2404.683) [-2410.100] (-2407.328) -- 0:05:18
      99500 -- [-2401.518] (-2408.416) (-2400.970) (-2404.022) * [-2406.322] (-2408.667) (-2399.928) (-2409.990) -- 0:05:16
      100000 -- [-2399.867] (-2410.943) (-2399.621) (-2398.516) * [-2401.668] (-2410.643) (-2407.773) (-2409.289) -- 0:05:15

      Average standard deviation of split frequencies: 0.001873

      100500 -- [-2399.247] (-2413.485) (-2408.504) (-2405.615) * (-2404.807) (-2405.445) (-2408.629) [-2407.212] -- 0:05:22
      101000 -- (-2408.581) (-2406.429) [-2394.939] (-2400.941) * (-2407.674) (-2404.664) (-2400.487) [-2401.337] -- 0:05:20
      101500 -- (-2407.424) (-2408.315) [-2398.609] (-2395.718) * (-2398.548) (-2405.405) (-2404.830) [-2404.677] -- 0:05:18
      102000 -- (-2401.900) (-2400.753) [-2404.184] (-2403.516) * (-2405.032) (-2404.884) (-2409.473) [-2398.243] -- 0:05:16
      102500 -- (-2404.377) (-2401.232) (-2404.371) [-2402.082] * [-2402.351] (-2405.942) (-2404.974) (-2399.887) -- 0:05:15
      103000 -- [-2403.137] (-2401.260) (-2409.235) (-2407.242) * (-2405.337) (-2402.714) [-2403.398] (-2406.591) -- 0:05:13
      103500 -- (-2405.623) (-2406.008) (-2404.123) [-2407.123] * (-2400.481) (-2400.066) [-2401.550] (-2399.217) -- 0:05:20
      104000 -- (-2403.278) [-2400.604] (-2401.576) (-2403.300) * [-2399.271] (-2398.848) (-2399.584) (-2402.895) -- 0:05:18
      104500 -- (-2414.172) (-2403.934) [-2399.160] (-2408.515) * (-2412.240) (-2405.703) [-2405.997] (-2401.188) -- 0:05:17
      105000 -- [-2401.964] (-2409.681) (-2402.456) (-2411.493) * (-2412.636) (-2403.132) (-2406.384) [-2401.364] -- 0:05:15

      Average standard deviation of split frequencies: 0.001779

      105500 -- (-2403.651) [-2402.490] (-2405.263) (-2406.893) * (-2413.099) [-2400.492] (-2403.949) (-2406.511) -- 0:05:13
      106000 -- (-2399.462) [-2409.315] (-2404.086) (-2413.147) * (-2410.685) (-2402.330) [-2402.506] (-2408.731) -- 0:05:20
      106500 -- (-2404.191) (-2408.858) [-2404.766] (-2406.357) * (-2400.774) [-2402.552] (-2407.309) (-2400.818) -- 0:05:18
      107000 -- (-2411.698) (-2405.466) [-2406.966] (-2403.262) * (-2413.504) [-2400.980] (-2408.906) (-2416.256) -- 0:05:17
      107500 -- (-2407.897) (-2399.621) (-2403.208) [-2404.287] * [-2400.739] (-2404.487) (-2409.567) (-2403.834) -- 0:05:15
      108000 -- (-2405.262) (-2402.149) (-2398.157) [-2398.532] * [-2406.796] (-2406.516) (-2404.554) (-2405.603) -- 0:05:13
      108500 -- (-2411.594) (-2401.893) [-2397.794] (-2405.428) * (-2401.286) (-2401.323) [-2401.936] (-2408.776) -- 0:05:12
      109000 -- (-2404.500) (-2402.559) (-2404.392) [-2400.204] * [-2404.787] (-2407.718) (-2402.526) (-2407.576) -- 0:05:18
      109500 -- (-2404.261) (-2406.992) (-2412.018) [-2400.229] * (-2402.522) [-2412.326] (-2409.933) (-2400.094) -- 0:05:17
      110000 -- [-2398.829] (-2406.933) (-2406.479) (-2404.916) * (-2406.663) (-2404.548) [-2405.955] (-2407.194) -- 0:05:15

      Average standard deviation of split frequencies: 0.001704

      110500 -- [-2396.637] (-2405.760) (-2405.260) (-2400.755) * [-2401.034] (-2414.497) (-2412.947) (-2405.340) -- 0:05:13
      111000 -- (-2407.222) (-2411.800) [-2401.200] (-2404.039) * (-2407.199) [-2411.162] (-2402.977) (-2413.444) -- 0:05:12
      111500 -- (-2406.467) (-2408.660) [-2406.060] (-2403.039) * [-2400.640] (-2401.262) (-2409.956) (-2403.748) -- 0:05:10
      112000 -- (-2406.512) [-2405.902] (-2406.000) (-2403.391) * (-2406.104) [-2404.652] (-2407.593) (-2405.371) -- 0:05:17
      112500 -- (-2404.343) (-2411.674) (-2396.945) [-2405.813] * (-2403.250) [-2399.846] (-2404.434) (-2403.697) -- 0:05:15
      113000 -- (-2402.951) (-2404.946) (-2402.836) [-2403.563] * (-2401.572) (-2403.878) (-2403.285) [-2404.913] -- 0:05:13
      113500 -- [-2405.131] (-2412.031) (-2399.925) (-2404.929) * [-2400.620] (-2410.835) (-2403.700) (-2404.566) -- 0:05:12
      114000 -- [-2403.270] (-2405.160) (-2410.020) (-2400.117) * (-2402.069) (-2400.730) (-2401.292) [-2398.087] -- 0:05:10
      114500 -- (-2410.360) [-2402.030] (-2403.301) (-2405.896) * (-2405.845) (-2404.605) [-2403.822] (-2406.697) -- 0:05:17
      115000 -- (-2407.651) (-2410.385) (-2405.382) [-2403.498] * [-2404.312] (-2404.670) (-2409.607) (-2404.038) -- 0:05:15

      Average standard deviation of split frequencies: 0.003251

      115500 -- (-2398.360) (-2406.530) (-2400.902) [-2403.410] * (-2403.852) (-2402.008) (-2404.309) [-2409.171] -- 0:05:13
      116000 -- [-2397.009] (-2405.400) (-2400.504) (-2407.124) * (-2401.939) [-2403.523] (-2403.309) (-2405.295) -- 0:05:12
      116500 -- [-2397.261] (-2405.266) (-2402.186) (-2398.359) * [-2400.841] (-2405.460) (-2405.041) (-2400.170) -- 0:05:10
      117000 -- (-2403.054) (-2400.495) [-2399.910] (-2403.429) * (-2407.900) (-2395.302) [-2404.833] (-2405.792) -- 0:05:09
      117500 -- (-2405.683) (-2398.885) [-2398.244] (-2401.275) * (-2403.252) (-2396.422) [-2402.150] (-2404.069) -- 0:05:15
      118000 -- [-2399.564] (-2400.790) (-2408.696) (-2404.568) * (-2405.418) (-2406.665) (-2406.041) [-2400.408] -- 0:05:13
      118500 -- [-2402.142] (-2405.006) (-2407.668) (-2400.480) * [-2406.535] (-2405.434) (-2402.176) (-2406.882) -- 0:05:12
      119000 -- (-2404.224) (-2400.929) [-2401.190] (-2405.693) * [-2403.011] (-2408.755) (-2403.127) (-2398.680) -- 0:05:10
      119500 -- (-2403.765) [-2404.677] (-2408.671) (-2402.228) * (-2400.919) [-2401.069] (-2401.982) (-2406.406) -- 0:05:09
      120000 -- (-2411.958) [-2406.096] (-2411.999) (-2406.917) * (-2399.557) [-2402.939] (-2404.736) (-2405.705) -- 0:05:08

      Average standard deviation of split frequencies: 0.001563

      120500 -- (-2406.936) (-2408.303) (-2403.295) [-2398.771] * (-2407.783) [-2401.806] (-2404.948) (-2403.155) -- 0:05:13
      121000 -- (-2405.017) (-2402.590) (-2409.768) [-2403.095] * (-2403.392) [-2404.944] (-2396.396) (-2408.426) -- 0:05:12
      121500 -- (-2405.338) (-2406.219) (-2401.828) [-2402.587] * (-2401.147) [-2403.914] (-2397.109) (-2407.916) -- 0:05:10
      122000 -- (-2403.469) (-2412.396) (-2415.009) [-2407.441] * [-2399.566] (-2405.565) (-2406.315) (-2410.195) -- 0:05:09
      122500 -- (-2411.848) (-2407.697) (-2396.294) [-2396.602] * (-2400.426) (-2408.922) (-2399.806) [-2400.622] -- 0:05:08
      123000 -- (-2405.563) [-2397.835] (-2405.231) (-2398.146) * (-2400.773) (-2409.749) (-2405.210) [-2405.076] -- 0:05:13
      123500 -- [-2397.031] (-2413.981) (-2404.620) (-2400.513) * [-2398.874] (-2411.306) (-2407.861) (-2404.473) -- 0:05:12
      124000 -- (-2397.562) (-2409.055) [-2399.174] (-2401.922) * (-2414.153) (-2409.471) (-2403.380) [-2403.771] -- 0:05:10
      124500 -- (-2403.991) (-2405.689) (-2401.938) [-2399.081] * (-2410.487) [-2402.278] (-2408.428) (-2401.911) -- 0:05:09
      125000 -- [-2405.204] (-2402.947) (-2401.847) (-2402.222) * (-2409.173) (-2398.930) (-2405.822) [-2398.386] -- 0:05:08

      Average standard deviation of split frequencies: 0.008979

      125500 -- (-2400.039) [-2409.059] (-2402.338) (-2411.093) * (-2412.546) [-2401.988] (-2406.469) (-2405.862) -- 0:05:06
      126000 -- (-2399.850) (-2407.066) [-2400.580] (-2401.339) * (-2405.841) [-2396.126] (-2403.936) (-2406.003) -- 0:05:12
      126500 -- (-2411.178) (-2408.697) (-2408.214) [-2403.116] * (-2409.838) (-2403.804) [-2404.887] (-2409.370) -- 0:05:10
      127000 -- (-2406.563) (-2406.733) (-2403.946) [-2405.831] * [-2397.876] (-2403.001) (-2403.852) (-2401.746) -- 0:05:09
      127500 -- (-2404.550) [-2407.357] (-2407.212) (-2401.691) * [-2400.585] (-2403.335) (-2405.745) (-2404.060) -- 0:05:07
      128000 -- (-2396.213) [-2400.606] (-2400.235) (-2401.997) * [-2398.476] (-2411.696) (-2409.058) (-2408.104) -- 0:05:06
      128500 -- (-2400.639) (-2405.188) [-2400.648] (-2400.308) * [-2402.341] (-2399.391) (-2404.632) (-2410.078) -- 0:05:05
      129000 -- [-24