--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Fri Nov 25 15:45:35 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/1/140up-PB/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -2398.91 -2412.29 2 -2398.87 -2412.96 -------------------------------------- TOTAL -2398.89 -2412.68 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.817729 0.008042 0.657456 1.004305 0.811009 1081.66 1090.27 1.000 r(A<->C){all} 0.078667 0.000399 0.040214 0.117740 0.077390 1023.22 1145.72 1.000 r(A<->G){all} 0.198506 0.001051 0.138550 0.262135 0.196230 721.19 829.48 1.000 r(A<->T){all} 0.110319 0.000837 0.055637 0.166030 0.108921 850.56 898.52 1.000 r(C<->G){all} 0.063209 0.000266 0.031362 0.093662 0.062604 915.87 1030.72 1.001 r(C<->T){all} 0.492165 0.002433 0.392763 0.584091 0.492397 663.90 822.16 1.000 r(G<->T){all} 0.057134 0.000368 0.022753 0.095873 0.055229 1040.26 1090.41 1.000 pi(A){all} 0.258985 0.000207 0.229776 0.286546 0.258728 1222.57 1231.93 1.000 pi(C){all} 0.263456 0.000193 0.237335 0.291451 0.263350 1086.03 1166.34 1.000 pi(G){all} 0.269120 0.000215 0.239870 0.296685 0.268557 1031.94 1109.77 1.000 pi(T){all} 0.208439 0.000176 0.183002 0.234384 0.208114 915.59 1032.20 1.000 alpha{1,2} 0.081071 0.001181 0.002507 0.130731 0.087654 1099.90 1142.48 1.001 alpha{3} 3.089106 0.902213 1.597014 5.108281 2.951970 1246.35 1325.53 1.000 pinvar{all} 0.199959 0.005289 0.053441 0.335501 0.202828 915.85 1004.19 1.002 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -2265.340105 Model 2: PositiveSelection -2265.340105 Model 0: one-ratio -2296.71442 Model 3: discrete -2263.30653 Model 7: beta -2263.441582 Model 8: beta&w>1 -2263.4416 Model 0 vs 1 62.74862999999914 Model 2 vs 1 0.0 Model 8 vs 7 3.600000036385609E-5
>C1 MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK >C2 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C3 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C4 MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK TAEQVSLDSIK >C5 MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK VPEEVSLDSVK >C6 MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK KSSEVSLDSVK >C7 MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK VPEQVSLDSVK CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=261 C1 MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER C2 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER C3 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER C4 MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER C5 MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER C6 MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER C7 MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER *.*: ************ :: ..*:* ***.******* * *****:** C1 LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN C2 LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN C3 LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN C4 LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN C5 LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN C6 LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN C7 LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN **:**:*************:*********:************.******* C1 NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS C2 NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS C3 NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS C4 NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS C5 NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS C6 NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS C7 NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS *:****************:***********************:*****:* C1 VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL C2 VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL C3 VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL C4 VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL C5 VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL C6 VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL C7 VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL ****************:******:.*******************.***** C1 LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK C2 LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK C3 LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK C4 LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK C5 LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK C6 LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK C7 LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK *************************:*** ********: * ***.**** C1 TSEHVSLDTIK C2 TSEQVSLDTIK C3 TSEQVSLDTIK C4 TAEQVSLDSIK C5 VPEEVSLDSVK C6 KSSEVSLDSVK C7 VPEQVSLDSVK ...****::* PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] ins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 7 SEQUENCES [PROTEIN] Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 261 type PROTEIN Struct Unchecked Input File /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 261 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln --- Process Method/Library/Aln Mproba_pair xxx Retrieved S/opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln xxx Retrieved Mproba_pair All Methods Retrieved MANUAL PENALTIES: gapopen=0 gapext=0 Library Total Size: [10962] Library Relaxation: Multi_proc [72] Relaxation Summary: [10962]--->[10962] UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 OUTPUT RESULTS #### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii #### File Type= MSA Format= html Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html #### File Type= MSA Format= score_ascii Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii # Command Line: t_coffee_ADOPS -infile /opt/ADOPS/1/140up-PB/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast [PROGRAM:T-COFFEE] # T-COFFEE Memory Usage: Current= 29.398 Mb, Max= 30.781 Mb # Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) # T-COFFEE is available from http://www.tcoffee.org # Register on: https://groups.google.com/group/tcoffee/ >C1 MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK >C2 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C3 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C4 MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK TAEQVSLDSIK >C5 MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK VPEEVSLDSVK >C6 MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK KSSEVSLDSVK >C7 MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK VPEQVSLDSVK FORMAT of file /tmp/tmp3342885000778637361aln Not Supported[FATAL:T-COFFEE] >C1 MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK >C2 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C3 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C4 MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK TAEQVSLDSIK >C5 MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK VPEEVSLDSVK >C6 MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK KSSEVSLDSVK >C7 MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK VPEQVSLDSVK input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:261 S:100 BS:261 # TC_SIMILARITY_MATRIX_FORMAT_01 # SEQ_INDEX C1 0 # SEQ_INDEX C2 1 # SEQ_INDEX C3 2 # SEQ_INDEX C4 3 # SEQ_INDEX C5 4 # SEQ_INDEX C6 5 # SEQ_INDEX C7 6 # PW_SEQ_DISTANCES BOT 0 1 96.55 C1 C2 96.55 TOP 1 0 96.55 C2 C1 96.55 BOT 0 2 96.17 C1 C3 96.17 TOP 2 0 96.17 C3 C1 96.17 BOT 0 3 92.34 C1 C4 92.34 TOP 3 0 92.34 C4 C1 92.34 BOT 0 4 92.34 C1 C5 92.34 TOP 4 0 92.34 C5 C1 92.34 BOT 0 5 92.72 C1 C6 92.72 TOP 5 0 92.72 C6 C1 92.72 BOT 0 6 91.57 C1 C7 91.57 TOP 6 0 91.57 C7 C1 91.57 BOT 1 2 99.62 C2 C3 99.62 TOP 2 1 99.62 C3 C2 99.62 BOT 1 3 90.80 C2 C4 90.80 TOP 3 1 90.80 C4 C2 90.80 BOT 1 4 90.80 C2 C5 90.80 TOP 4 1 90.80 C5 C2 90.80 BOT 1 5 91.19 C2 C6 91.19 TOP 5 1 91.19 C6 C2 91.19 BOT 1 6 91.19 C2 C7 91.19 TOP 6 1 91.19 C7 C2 91.19 BOT 2 3 90.42 C3 C4 90.42 TOP 3 2 90.42 C4 C3 90.42 BOT 2 4 90.42 C3 C5 90.42 TOP 4 2 90.42 C5 C3 90.42 BOT 2 5 90.80 C3 C6 90.80 TOP 5 2 90.80 C6 C3 90.80 BOT 2 6 90.80 C3 C7 90.80 TOP 6 2 90.80 C7 C3 90.80 BOT 3 4 90.80 C4 C5 90.80 TOP 4 3 90.80 C5 C4 90.80 BOT 3 5 90.42 C4 C6 90.42 TOP 5 3 90.42 C6 C4 90.42 BOT 3 6 91.57 C4 C7 91.57 TOP 6 3 91.57 C7 C4 91.57 BOT 4 5 94.25 C5 C6 94.25 TOP 5 4 94.25 C6 C5 94.25 BOT 4 6 94.25 C5 C7 94.25 TOP 6 4 94.25 C7 C5 94.25 BOT 5 6 93.49 C6 C7 93.49 TOP 6 5 93.49 C7 C6 93.49 AVG 0 C1 * 93.61 AVG 1 C2 * 93.36 AVG 2 C3 * 93.04 AVG 3 C4 * 91.06 AVG 4 C5 * 92.15 AVG 5 C6 * 92.15 AVG 6 C7 * 92.15 TOT TOT * 92.50 CLUSTAL W (1.83) multiple sequence alignment C1 ATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC C2 ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC C3 ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC C4 ATGAATTTTCTGTGGAAAGGCCGTCGGTTTCTGATCGCAGGTATCCTGCC C5 ATGAGTTTCTTGTGGAAAGGACGCCGGTTTCTGATCGCCGGGATCCTGCC C6 ATGAGTTTCTTGTGGAAAGGACGACGGTTTTTGATTGCCGGCATTCTGCC C7 ATGAGTTTTTTGTTGAAAGGACGCCGGTTTTTGATCGCCGGCATCCTGCC ****.*** *** ******.** ****** **** **.** ** ***** C1 AACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAACAAAACAT C2 AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT C3 AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT C4 AACATTTGACGGCAGCTCAGACGACATAATCGACAAGGAAAGCAAAACTT C5 GATCATGGAAAACGGCGCCGACGACATAAAGGACAAGGAAAACAAGACCT C6 AGTCCTAGAACGCGGCGCAGATGACATAGTGGATAAGGAAAACAAGACCT C7 AGCTTTTGAACGCGGCCCAGACGACATAGTGGATAAGGAAAACAAGACTT .. * *. .*. * *.** **.***.: ** *******. **.** * C1 ACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACAGGACTGGAGCGC C2 ACAAGGCATTTCTGGACAGTAAACTACCAGAAGAAACGGGACTGGAGCGC C3 ACAAGGCCTTTCTGGACCGTAAACTACCAGAGGAAACGGGACTGGAGCGC C4 ACAAGGCCTTCCTGGCCAGTAAACCACCAGAGGAAACGGGACTGGAGCGC C5 ACAAGGCTTTCCTGGCCAGTAAACCGCCGGAGGAAACGGGTCTGGAGCGC C6 ACAAGGCATTCCTAGCCAGTAAACCACCAGAGGAAACAGGAATGGAGCGC C7 ATAAGGCATTCCTGGCCAGTAAACCGCCAGAGGAAACGGGACTGGAGCGC * ***** ** **.*.*.****** .**.**.*****.**:.******** C1 CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCCTCCGAGCT C2 CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT C3 CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT C4 CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCGTCCGAACT C5 CTCAAACAAATGTTTTCCATCGACGAGTTTGGAAGCATATCCTCCGAGTT C6 CTTAAACATATGTTTACAATCGACGAGTTCGGTAGTATATCCTCTGAACT C7 CTCAAACAAATGTTTTCAATTGACGAGTTTGGTAGTATATCTTCCGAGCT ** **.**:******:*.** ******** ** ** ***** ** **. * C1 TAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTATTGGAGCTATTT C2 TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT C3 TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT C4 TAACTCTGTTTACCAGGCTGGCTTCCTGGGATTCCTCGTTGGAGCAATTT C5 GAACTCCATTTACCAGGCCGGCTTCCTGGGCTTCCTCATTGGAGCCATTT C6 GAATTCAATTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCGATTT C7 GAATTCAATTTACCAGGCCGGTTTCCTGGGATTCCTCATTGGAGCGATTT ** ** .**** ***** ** *****.**.***** .******* **** C1 ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC C2 ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC C3 ACGGCGGAGTTACACAATCGCGCGTGGCTTATATGAATTTCATGGAGAAC C4 ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC C5 ATGGAGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC C6 ACGGTGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC C7 ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC * ** ********************** ** ****************** C1 AACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA C2 AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA C3 AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA C4 AACGAAGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA C5 AACCAGGCGACAGCCTTCAAATCTCACTTTGATGCCAAGAAAAAGCTGCA C6 AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTTCA C7 AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTACA *** *.** ***** ** ***** *********************** ** C1 AGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCAAATGGGGCTGGC C2 AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC C3 AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC C4 AGATCAATTCACAGTCAACTTCGCCAAAGGCGGTTTCAAATGGGGCTGGC C5 GGATGAGTTCACAGTCAACTTTGCCAAGGGTGGTTTCAAATGGGGCTGGC C6 GGACCAATTTACTGTTAACTTTGCCAAAGGCGGCTTTAAATGGGGTTGGC C7 GGACCAATTTACGGTCAACTTTGCCAAGGGCGGCTTCAAATGGGGCTGGC .** *.** ** ** ***** *****.** ** ** ******** **** C1 GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACTTGTATGTCG C2 GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG C3 GAGTAGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG C4 GAGTGGGACTTTTTACCACATCCTACCTCGGCATCATCACCTGCATTTCG C5 GCGTGGGCCTCTTTACCACCTCCTACTTTGGGATCATCACCTGCATGTCG C6 GAGTGGGACTTTTCACCACTTCCTACTTTGGCATCATTACGTGCATGTCG C7 GAGTGGGACTTTTTACAACTTCCTACTTCGGCATCATCACCTGCATATCT *.**.**.** ** **.** ****** * ** ***** ** ** ** ** C1 GTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGCCGCTGGTTCCAT C2 GTGTACCGTGGAAAATCCTCAATATACGAATACTTGGCCGCTGGCTCCGT C3 GTGTACCGTGGAAAATCCTCAATTTACGAATACTTGGCCGCTGGTTCCGT C4 GTGTACCGTGGAAAGTCCTCAATTTATGAGTACTTGGCCGCTGGTTCCAT C5 GTGTACCGTGGCAAATCCTCGATCTACGAGTACCTGGCCGCCGGTTCCAT C6 GTGTACCGTGGAAAATCATCTATCTACGAGTACTTGGCCGCTGGATCCGT C7 GTGTATCGTGGAAAATCGTCGATCTACGAGTACTTGGCCGCAGGTTCCGT ***** *****.**.** ** ** ** **.*** ******* ** ***.* C1 CACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGGGCATGGCGGCAG C2 CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG C3 CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG C4 CACCGGCTCACTTTACAAAATGAATCTTGGTCTGCGGGGCATGGCGGCAG C5 CACCGGCTCGCTCTACAAGATGAATTTGGGACTGCGCGGCATGGCGGCAG C6 CACCGGCTCCCTTTACAAAGTAAATCTGGGACTACGGGGTATGGCAGCAG C7 CACCGGCTCCCTTTACAAAATGAATCTGGGACTGCGAGGCATGGCGGCAG ********* ** *****..*.*.* * **:**.** ** *****.**** C1 GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG C2 GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG C3 GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGTTG C4 GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGGTGGTGTAACGTCCCTG C5 GTGGAATCATTGGAGGCTTCCTGGGCGGAGTGGCTGGCGTGACCTCGCTG C6 GCGGGATCATTGGTGGCTTCTTGGGCGGAGTCGCTGGAGTCACCTCCCTG C7 GCGGGATCATTGGCGGCTTCTTGGGCGGAGTGGCTGGAGTCACCTCCCTG * **.******** ** *** *******.** * *** ** ** ** ** C1 CTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGTTCGCTACTGGCA C2 CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA C3 CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA C4 CTGCTGATGAAGGCATCCGGGACTTCGATGGAGGAGGTTCGCTACTGGCA C5 CTGCTGATGAAGGCTTCCGGCACCTCGATGGAGGAGGTGCGCTACTGGCA C6 CTGCTGATGAAGGCATCCGGCACTTCGATGGAGGAAGTGCGCTACTGGCA C7 CTACTGATGAAGGCATCCGGCACTTCGATGGAGGAGGTGCGCTATTGGCA **.********.**:**.** ** ********.**.** ***** ***** C1 GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA C2 GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA C3 GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA C4 GTACAAATGGCGACTCGATCGCGACGAGAACATTCAACTGGCGTTCAAAA C5 GTACAAGTGGCGACTCGACCGCGACGAAAACATCCAGCTGGCCTTCAAAA C6 GTACAAGTGGCGACTGGATCGCGACGAAAACATTCAGCTGGCGTTCAAAA C7 GTACAAGTGGCGGCTCGATCGCGATGATAACATCCAGCAGGCCTTCAAAA ******.*****.** ** ***** ** ***** **.*:*** ******* C1 AACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA C2 AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA C3 AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA C4 AACTGACAGAGGATGAAACCCCAGAACTTTTCAAGGTCCACGACGAAAAA C5 AGCTGACGGAAGACGAAAACCCAGCGCTCTTCAAGGCGCACGACGAAAAA C6 AACTGACGGAGGATGAAACCCCTGAGTTGTTTAAGGCCCATGATGAAAAG C7 AACTGACAGAGGATGAACAACCGGAGCTGTTCAAGGTCCATGACGAAAAG *.*****.**.** **...** *.. * ** **** ** ** **.**. C1 ACATCCGAACATGTATCGCTGGACACGATCAAG C2 ACATCCGAACAGGTATCGCTGGACACGATCAAG C3 ACATCCGAACAGGTATCGCTGGACACGATCAAG C4 ACAGCCGAACAGGTATCGCTGGACTCGATCAAG C5 GTACCCGAAGAGGTGTCCCTGGACTCGGTCAAG C6 AAATCCTCTGAGGTATCCCTCGACTCGGTCAAG C7 GTACCCGAACAGGTATCCCTGGACTCGGTCAAG . * ** .: * **.** ** ***:**.***** >C1 ATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC AACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAACAAAACAT ACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACAGGACTGGAGCGC CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCCTCCGAGCT TAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTATTGGAGCTATTT ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC AACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA AGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCAAATGGGGCTGGC GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACTTGTATGTCG GTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGCCGCTGGTTCCAT CACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGGGCATGGCGGCAG GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG CTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGTTCGCTACTGGCA GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA AACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA ACATCCGAACATGTATCGCTGGACACGATCAAG >C2 ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT ACAAGGCATTTCTGGACAGTAAACTACCAGAAGAAACGGGACTGGAGCGC CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT ACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCATGGAGAAC AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC GAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG GTGTACCGTGGAAAATCCTCAATATACGAATACTTGGCCGCTGGCTCCGT CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGCTG CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA ACATCCGAACAGGTATCGCTGGACACGATCAAG >C3 ATGAATTTTATGTGGAAAGGACGCCGGTTTCTGATCGCAGGCATCCTGCC AACTTTCCAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAATAAAACCT ACAAGGCCTTTCTGGACCGTAAACTACCAGAGGAAACGGGACTGGAGCGC CTCAAACAAATGTTTTCAATCGACGAGTTTGGCAGCATATCCTCCGAGCT TAACTCTGTTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCAATTT ACGGCGGAGTTACACAATCGCGCGTGGCTTATATGAATTTCATGGAGAAC AACCAGGCCACAGCCTTCAAATCGCACTTTGATGCCAAGAAAAAGCTGCA AGATCAATTCACAGTCAACTTCGCCAAAGGCGGCTTCAAATGGGGCTGGC GAGTAGGACTTTTTACCACATCCTACTTCGGCATCATCACCTGCATGTCG GTGTACCGTGGAAAATCCTCAATTTACGAATACTTGGCCGCTGGTTCCGT CACCGGCTCGCTGTACAAAGTGAATCTGGGTCTGCGGGGCATGGCGGCAG GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGACGTCGTTG CTGCTGATGAAGGCATCCGGGACCTCGATGGAGGAGGTTCGCTACTGGCA GTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGCGTTCAAAA AACTGACAGAGGACCAAAACCCAGAGCTTTTCAAGGCCCACGACGAGAAA ACATCCGAACAGGTATCGCTGGACACGATCAAG >C4 ATGAATTTTCTGTGGAAAGGCCGTCGGTTTCTGATCGCAGGTATCCTGCC AACATTTGACGGCAGCTCAGACGACATAATCGACAAGGAAAGCAAAACTT ACAAGGCCTTCCTGGCCAGTAAACCACCAGAGGAAACGGGACTGGAGCGC CTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCGTCCGAACT TAACTCTGTTTACCAGGCTGGCTTCCTGGGATTCCTCGTTGGAGCAATTT ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC AACGAAGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAAAAGCTGCA AGATCAATTCACAGTCAACTTCGCCAAAGGCGGTTTCAAATGGGGCTGGC GAGTGGGACTTTTTACCACATCCTACCTCGGCATCATCACCTGCATTTCG GTGTACCGTGGAAAGTCCTCAATTTATGAGTACTTGGCCGCTGGTTCCAT CACCGGCTCACTTTACAAAATGAATCTTGGTCTGCGGGGCATGGCGGCAG GTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGGTGGTGTAACGTCCCTG CTGCTGATGAAGGCATCCGGGACTTCGATGGAGGAGGTTCGCTACTGGCA GTACAAATGGCGACTCGATCGCGACGAGAACATTCAACTGGCGTTCAAAA AACTGACAGAGGATGAAACCCCAGAACTTTTCAAGGTCCACGACGAAAAA ACAGCCGAACAGGTATCGCTGGACTCGATCAAG >C5 ATGAGTTTCTTGTGGAAAGGACGCCGGTTTCTGATCGCCGGGATCCTGCC GATCATGGAAAACGGCGCCGACGACATAAAGGACAAGGAAAACAAGACCT ACAAGGCTTTCCTGGCCAGTAAACCGCCGGAGGAAACGGGTCTGGAGCGC CTCAAACAAATGTTTTCCATCGACGAGTTTGGAAGCATATCCTCCGAGTT GAACTCCATTTACCAGGCCGGCTTCCTGGGCTTCCTCATTGGAGCCATTT ATGGAGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC AACCAGGCGACAGCCTTCAAATCTCACTTTGATGCCAAGAAAAAGCTGCA GGATGAGTTCACAGTCAACTTTGCCAAGGGTGGTTTCAAATGGGGCTGGC GCGTGGGCCTCTTTACCACCTCCTACTTTGGGATCATCACCTGCATGTCG GTGTACCGTGGCAAATCCTCGATCTACGAGTACCTGGCCGCCGGTTCCAT CACCGGCTCGCTCTACAAGATGAATTTGGGACTGCGCGGCATGGCGGCAG GTGGAATCATTGGAGGCTTCCTGGGCGGAGTGGCTGGCGTGACCTCGCTG CTGCTGATGAAGGCTTCCGGCACCTCGATGGAGGAGGTGCGCTACTGGCA GTACAAGTGGCGACTCGACCGCGACGAAAACATCCAGCTGGCCTTCAAAA AGCTGACGGAAGACGAAAACCCAGCGCTCTTCAAGGCGCACGACGAAAAA GTACCCGAAGAGGTGTCCCTGGACTCGGTCAAG >C6 ATGAGTTTCTTGTGGAAAGGACGACGGTTTTTGATTGCCGGCATTCTGCC AGTCCTAGAACGCGGCGCAGATGACATAGTGGATAAGGAAAACAAGACCT ACAAGGCATTCCTAGCCAGTAAACCACCAGAGGAAACAGGAATGGAGCGC CTTAAACATATGTTTACAATCGACGAGTTCGGTAGTATATCCTCTGAACT GAATTCAATTTATCAGGCCGGCTTCCTGGGATTCCTCATTGGAGCGATTT ACGGTGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTTCA GGACCAATTTACTGTTAACTTTGCCAAAGGCGGCTTTAAATGGGGTTGGC GAGTGGGACTTTTCACCACTTCCTACTTTGGCATCATTACGTGCATGTCG GTGTACCGTGGAAAATCATCTATCTACGAGTACTTGGCCGCTGGATCCGT CACCGGCTCCCTTTACAAAGTAAATCTGGGACTACGGGGTATGGCAGCAG GCGGGATCATTGGTGGCTTCTTGGGCGGAGTCGCTGGAGTCACCTCCCTG CTGCTGATGAAGGCATCCGGCACTTCGATGGAGGAAGTGCGCTACTGGCA GTACAAGTGGCGACTGGATCGCGACGAAAACATTCAGCTGGCGTTCAAAA AACTGACGGAGGATGAAACCCCTGAGTTGTTTAAGGCCCATGATGAAAAG AAATCCTCTGAGGTATCCCTCGACTCGGTCAAG >C7 ATGAGTTTTTTGTTGAAAGGACGCCGGTTTTTGATCGCCGGCATCCTGCC AGCTTTTGAACGCGGCCCAGACGACATAGTGGATAAGGAAAACAAGACTT ATAAGGCATTCCTGGCCAGTAAACCGCCAGAGGAAACGGGACTGGAGCGC CTCAAACAAATGTTTTCAATTGACGAGTTTGGTAGTATATCTTCCGAGCT GAATTCAATTTACCAGGCCGGTTTCCTGGGATTCCTCATTGGAGCGATTT ACGGCGGAGTTACACAATCGCGCGTGGGCTACATGAATTTCATGGAGAAC AACCAGGCCACAGCTTTCAAATCGCACTTTGATGCCAAGAAAAAGCTACA GGACCAATTTACGGTCAACTTTGCCAAGGGCGGCTTCAAATGGGGCTGGC GAGTGGGACTTTTTACAACTTCCTACTTCGGCATCATCACCTGCATATCT GTGTATCGTGGAAAATCGTCGATCTACGAGTACTTGGCCGCAGGTTCCGT CACCGGCTCCCTTTACAAAATGAATCTGGGACTGCGAGGCATGGCGGCAG GCGGGATCATTGGCGGCTTCTTGGGCGGAGTGGCTGGAGTCACCTCCCTG CTACTGATGAAGGCATCCGGCACTTCGATGGAGGAGGTGCGCTATTGGCA GTACAAGTGGCGGCTCGATCGCGATGATAACATCCAGCAGGCCTTCAAAA AACTGACAGAGGATGAACAACCGGAGCTGTTCAAGGTCCATGACGAAAAG GTACCCGAACAGGTATCCCTGGACTCGGTCAAG >C1 MNFLWKGRRFLIAGILPTFEGAADEIVDKENKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKVSLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDENPELFKAHDEK TSEHVSLDTIK >C2 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDSKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C3 MNFMWKGRRFLIAGILPTFQGAADEIVDKENKTYKAFLDRKLPEETGLER LKQMFSIDEFGSISSELNSVYQAGFLGFLIGAIYGGVTQSRVAYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQQAFKKLTEDQNPELFKAHDEK TSEQVSLDTIK >C4 MNFLWKGRRFLIAGILPTFDGSSDDIIDKESKTYKAFLASKPPEETGLER LKQMFTIDEFGSISSELNSVYQAGFLGFLVGAIYGGVTQSRVGYMNFMEN NEATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYLGIITCIS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVGGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKVHDEK TAEQVSLDSIK >C5 MSFLWKGRRFLIAGILPIMENGADDIKDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDEFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSITGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDENPALFKAHDEK VPEEVSLDSVK >C6 MSFLWKGRRFLIAGILPVLERGADDIVDKENKTYKAFLASKPPEETGMER LKHMFTIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCMS VYRGKSSIYEYLAAGSVTGSLYKVNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDENIQLAFKKLTEDETPELFKAHDEK KSSEVSLDSVK >C7 MSFLLKGRRFLIAGILPAFERGPDDIVDKENKTYKAFLASKPPEETGLER LKQMFSIDEFGSISSELNSIYQAGFLGFLIGAIYGGVTQSRVGYMNFMEN NQATAFKSHFDAKKKLQDQFTVNFAKGGFKWGWRVGLFTTSYFGIITCIS VYRGKSSIYEYLAAGSVTGSLYKMNLGLRGMAAGGIIGGFLGGVAGVTSL LLMKASGTSMEEVRYWQYKWRLDRDDNIQQAFKKLTEDEQPELFKVHDEK VPEQVSLDSVK MrBayes v3.2.2 x64 (Bayesian Analysis of Phylogeny) Distributed under the GNU General Public License Type "help" or "help <command>" for information on the commands that are available. Type "about" for authorship and general information about the program. Executing file "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb" UNIX line termination Longest line length = 63 Parsing file Expecting NEXUS formatted file Reading data block Allocated taxon set Allocated matrix Defining new matrix with 7 taxa and 783 characters Missing data coded as ? Data matrix is interleaved Data is Dna Gaps coded as - Matching characters coded as . Taxon 1 -> C1 Taxon 2 -> C2 Taxon 3 -> C3 Taxon 4 -> C4 Taxon 5 -> C5 Taxon 6 -> C6 Taxon 7 -> C7 Successfully read matrix Setting default partition (does not divide up characters) Setting model defaults Seed (for generating default start values) = 1480088178 Setting output file names to "/opt/ADOPS/1/140up-PB/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>" Exiting data block Reading mrbayes block Setting autoclose to yes Setting nowarnings to yes Defining charset called first_pos Defining charset called second_pos Defining charset called third_pos Defining partition called by_codon Setting by_codon as the partition, dividing characters into 3 parts. Setting model defaults Seed (for generating default start values) = 1789361399 Setting Nst to 6 for partition 1 Setting Nst to 6 for partition 2 Setting Nst to 6 for partition 3 Setting Rates to Invgamma for partition 1 Setting Rates to Invgamma for partition 2 Setting Rates to Invgamma for partition 3 Successfully set likelihood model parameters to all applicable data partitions Unlinking Setting number of generations to 1000000 Running Markov chain MCMC stamp = 7160712863 Seed = 1990334525 Swapseed = 1480088178 Model settings: Settings for partition 1 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 2 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Settings for partition 3 -- Datatype = DNA Nucmodel = 4by4 Nst = 6 Substitution rates, expressed as proportions of the rate sum, have a Dirichlet prior (1.00,1.00,1.00,1.00,1.00,1.00) Covarion = No # States = 4 State frequencies have a Dirichlet prior (1.00,1.00,1.00,1.00) Rates = Invgamma Gamma shape parameter is exponentially distributed with parameter (2.00). Proportion of invariable sites is uniformly dist- ributed on the interval (0.00,1.00). Gamma distribution is approximated using 4 categories. Likelihood summarized over all rate categories in each generation. Active parameters: Partition(s) Parameters 1 2 3 ------------------------ Revmat 1 1 1 Statefreq 2 2 2 Shape 3 3 4 Pinvar 5 5 5 Ratemultiplier 6 6 6 Topology 7 7 7 Brlens 8 8 8 ------------------------ Parameters can be linked or unlinked across partitions using 'link' and 'unlink' 1 -- Parameter = Revmat{all} Type = Rates of reversible rate matrix Prior = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00) Partitions = All 2 -- Parameter = Pi{all} Type = Stationary state frequencies Prior = Dirichlet Partitions = All 3 -- Parameter = Alpha{1,2} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partitions = 1 and 2 4 -- Parameter = Alpha{3} Type = Shape of scaled gamma distribution of site rates Prior = Exponential(2.00) Partition = 3 5 -- Parameter = Pinvar{all} Type = Proportion of invariable sites Prior = Uniform(0.00,1.00) Partitions = All 6 -- Parameter = Ratemultiplier{all} Type = Partition-specific rate multiplier Prior = Fixed(1.0) Partitions = All 7 -- Parameter = Tau{all} Type = Topology Prior = All topologies equally probable a priori Partitions = All Subparam. = V{all} 8 -- Parameter = V{all} Type = Branch lengths Prior = Unconstrained:Exponential(10.0) Partitions = All The MCMC sampler will use the following moves: With prob. Chain will use move 1.06 % Dirichlet(Revmat{all}) 1.06 % Slider(Revmat{all}) 1.06 % Dirichlet(Pi{all}) 1.06 % Slider(Pi{all}) 2.13 % Multiplier(Alpha{1,2}) 2.13 % Multiplier(Alpha{3}) 2.13 % Slider(Pinvar{all}) 10.64 % ExtSPR(Tau{all},V{all}) 10.64 % ExtTBR(Tau{all},V{all}) 10.64 % NNI(Tau{all},V{all}) 10.64 % ParsSPR(Tau{all},V{all}) 31.91 % Multiplier(V{all}) 10.64 % Nodeslider(V{all}) 4.26 % TLMultiplier(V{all}) Division 1 has 34 unique site patterns Division 2 has 21 unique site patterns Division 3 has 97 unique site patterns Initializing conditional likelihoods Using standard SSE likelihood calculator for division 1 (single-precision) Using standard SSE likelihood calculator for division 2 (single-precision) Using standard SSE likelihood calculator for division 3 (single-precision) Initializing invariable-site conditional likelihoods Initial log likelihoods and log prior probs for run 1: Chain 1 -- -3057.137270 -- -24.557203 Chain 2 -- -3011.521253 -- -24.557203 Chain 3 -- -2986.654542 -- -24.557203 Chain 4 -- -2981.230552 -- -24.557203 Initial log likelihoods and log prior probs for run 2: Chain 1 -- -3046.022622 -- -24.557203 Chain 2 -- -2980.749586 -- -24.557203 Chain 3 -- -3045.756777 -- -24.557203 Chain 4 -- -3039.644610 -- -24.557203 Using a relative burnin of 25.0 % for diagnostics Chain results (1000000 generations requested): 0 -- [-3057.137] (-3011.521) (-2986.655) (-2981.231) * [-3046.023] (-2980.750) (-3045.757) (-3039.645) 500 -- (-2524.371) (-2516.998) [-2494.752] (-2530.720) * (-2520.174) (-2512.939) (-2509.779) [-2490.629] -- 0:00:00 1000 -- (-2495.223) (-2474.944) [-2458.521] (-2513.603) * (-2475.225) [-2466.106] (-2488.624) (-2454.309) -- 0:00:00 1500 -- (-2463.732) [-2427.933] (-2428.605) (-2493.559) * [-2451.642] (-2434.593) (-2459.888) (-2438.230) -- 0:00:00 2000 -- (-2441.026) [-2426.067] (-2421.696) (-2461.875) * (-2425.965) (-2425.446) [-2408.331] (-2422.146) -- 0:08:19 2500 -- (-2414.469) (-2429.750) [-2409.187] (-2442.004) * (-2418.130) (-2405.069) [-2408.019] (-2414.582) -- 0:06:39 3000 -- (-2407.913) (-2419.277) [-2403.094] (-2436.109) * (-2409.233) [-2404.457] (-2411.778) (-2405.373) -- 0:05:32 3500 -- (-2406.601) (-2416.457) [-2399.456] (-2420.591) * (-2408.937) [-2401.991] (-2405.598) (-2414.136) -- 0:04:44 4000 -- (-2403.181) (-2412.561) [-2407.076] (-2411.471) * (-2405.662) (-2406.628) (-2404.562) [-2400.581] -- 0:04:09 4500 -- (-2402.834) (-2411.243) (-2408.221) [-2401.938] * [-2401.084] (-2402.360) (-2407.405) (-2404.221) -- 0:07:22 5000 -- (-2401.913) (-2407.668) [-2406.744] (-2406.550) * (-2399.602) (-2407.684) (-2403.549) [-2397.425] -- 0:06:38 Average standard deviation of split frequencies: 0.062854 5500 -- (-2406.528) (-2406.343) (-2414.453) [-2399.565] * (-2402.698) [-2401.671] (-2411.516) (-2403.459) -- 0:06:01 6000 -- (-2400.734) (-2416.677) (-2404.744) [-2398.452] * [-2406.848] (-2404.475) (-2405.294) (-2403.559) -- 0:05:31 6500 -- [-2406.921] (-2401.603) (-2401.355) (-2402.402) * (-2406.812) [-2401.616] (-2403.619) (-2412.524) -- 0:05:05 7000 -- (-2405.086) (-2404.102) [-2398.616] (-2401.545) * (-2404.481) [-2405.067] (-2408.722) (-2412.129) -- 0:04:43 7500 -- (-2399.047) (-2396.464) (-2404.842) [-2396.115] * (-2405.866) (-2401.829) (-2406.906) [-2403.132] -- 0:06:37 8000 -- (-2402.521) (-2401.235) [-2402.788] (-2401.858) * (-2407.878) [-2401.938] (-2405.870) (-2411.490) -- 0:06:12 8500 -- (-2401.264) (-2414.232) [-2403.607] (-2403.645) * (-2407.227) (-2409.422) [-2405.732] (-2402.077) -- 0:05:49 9000 -- (-2402.320) (-2406.935) (-2395.187) [-2400.281] * [-2410.939] (-2405.914) (-2407.093) (-2406.577) -- 0:05:30 9500 -- (-2402.048) (-2400.399) (-2402.538) [-2401.608] * (-2409.796) [-2408.425] (-2404.418) (-2410.541) -- 0:05:12 10000 -- (-2405.930) (-2406.794) (-2404.355) [-2398.616] * [-2399.539] (-2404.657) (-2408.531) (-2404.119) -- 0:06:36 Average standard deviation of split frequencies: 0.035355 10500 -- (-2402.698) (-2399.489) [-2398.322] (-2403.711) * (-2406.485) [-2401.396] (-2401.948) (-2405.836) -- 0:06:16 11000 -- (-2398.242) (-2405.632) [-2407.608] (-2400.282) * (-2403.267) [-2403.072] (-2397.443) (-2403.772) -- 0:05:59 11500 -- [-2404.760] (-2398.306) (-2411.455) (-2404.057) * (-2406.316) [-2401.168] (-2405.039) (-2407.874) -- 0:05:43 12000 -- [-2404.930] (-2406.390) (-2402.269) (-2411.104) * [-2401.468] (-2406.830) (-2415.730) (-2408.121) -- 0:05:29 12500 -- (-2410.313) (-2398.449) (-2405.502) [-2406.779] * [-2404.772] (-2401.121) (-2416.619) (-2409.017) -- 0:05:16 13000 -- [-2403.806] (-2410.161) (-2406.973) (-2403.630) * (-2396.706) [-2402.134] (-2405.453) (-2403.138) -- 0:06:19 13500 -- (-2409.954) (-2407.238) [-2407.004] (-2403.914) * (-2404.436) (-2400.773) (-2404.945) [-2402.522] -- 0:06:05 14000 -- (-2404.179) (-2399.203) [-2399.042] (-2403.687) * (-2402.795) (-2404.316) (-2411.945) [-2402.690] -- 0:05:52 14500 -- (-2401.780) (-2403.138) [-2398.612] (-2406.233) * (-2401.531) (-2411.184) (-2414.709) [-2404.300] -- 0:05:39 15000 -- (-2405.366) [-2405.245] (-2400.379) (-2410.826) * (-2399.468) (-2405.455) [-2396.417] (-2409.103) -- 0:05:28 Average standard deviation of split frequencies: 0.000000 15500 -- (-2407.427) (-2414.800) (-2408.142) [-2405.777] * (-2407.232) [-2402.040] (-2400.719) (-2406.722) -- 0:06:21 16000 -- (-2400.308) [-2413.403] (-2401.236) (-2404.666) * [-2402.524] (-2399.305) (-2407.479) (-2408.567) -- 0:06:09 16500 -- (-2395.780) [-2403.432] (-2401.565) (-2402.978) * [-2403.293] (-2400.295) (-2400.582) (-2406.182) -- 0:05:57 17000 -- (-2402.375) (-2406.567) (-2403.919) [-2402.004] * [-2401.236] (-2400.438) (-2402.121) (-2412.639) -- 0:05:46 17500 -- (-2397.460) (-2400.294) [-2398.252] (-2406.800) * (-2405.753) [-2400.623] (-2404.127) (-2413.447) -- 0:05:36 18000 -- [-2404.735] (-2399.658) (-2409.189) (-2401.292) * [-2405.943] (-2409.753) (-2401.381) (-2413.072) -- 0:05:27 18500 -- [-2404.435] (-2402.452) (-2398.062) (-2400.590) * (-2400.844) (-2405.023) [-2402.115] (-2403.807) -- 0:06:11 19000 -- [-2408.167] (-2400.548) (-2406.751) (-2399.218) * (-2401.694) (-2404.443) (-2407.314) [-2406.532] -- 0:06:01 19500 -- [-2400.571] (-2405.956) (-2405.649) (-2400.360) * (-2402.637) (-2406.372) (-2403.229) [-2407.409] -- 0:05:51 20000 -- (-2403.187) (-2407.668) (-2399.443) [-2398.982] * (-2403.679) (-2406.223) (-2403.908) [-2404.157] -- 0:05:43 Average standard deviation of split frequencies: 0.027372 20500 -- (-2402.761) (-2399.534) [-2399.514] (-2401.080) * (-2410.633) (-2414.180) (-2404.510) [-2402.254] -- 0:05:34 21000 -- (-2405.613) [-2401.401] (-2402.401) (-2399.406) * (-2409.781) (-2404.630) (-2407.890) [-2397.646] -- 0:06:12 21500 -- (-2407.672) (-2404.674) [-2406.924] (-2400.564) * (-2406.715) (-2400.108) [-2411.078] (-2405.934) -- 0:06:04 22000 -- [-2407.107] (-2405.269) (-2403.728) (-2401.326) * [-2402.538] (-2409.525) (-2405.097) (-2403.387) -- 0:05:55 22500 -- (-2408.321) [-2404.427] (-2406.475) (-2403.155) * [-2401.847] (-2405.869) (-2406.742) (-2404.024) -- 0:05:47 23000 -- (-2407.253) (-2413.203) (-2407.680) [-2401.536] * (-2403.233) (-2401.456) (-2401.187) [-2404.934] -- 0:05:39 23500 -- (-2402.167) [-2414.384] (-2401.766) (-2398.800) * (-2402.756) (-2401.234) [-2402.929] (-2406.085) -- 0:05:32 24000 -- [-2397.983] (-2404.442) (-2397.525) (-2404.029) * (-2412.847) [-2397.536] (-2401.777) (-2401.055) -- 0:06:06 24500 -- [-2401.067] (-2398.431) (-2405.434) (-2405.974) * (-2403.412) (-2413.023) [-2408.230] (-2398.739) -- 0:05:58 25000 -- [-2399.387] (-2411.859) (-2405.390) (-2406.199) * (-2403.964) (-2400.856) [-2398.611] (-2406.423) -- 0:05:51 Average standard deviation of split frequencies: 0.014505 25500 -- [-2401.254] (-2405.520) (-2401.085) (-2403.462) * (-2408.760) (-2411.608) [-2400.676] (-2402.724) -- 0:05:43 26000 -- (-2405.128) (-2409.914) [-2403.345] (-2400.095) * (-2407.024) (-2404.076) (-2395.045) [-2401.577] -- 0:05:37 26500 -- (-2401.581) [-2402.482] (-2404.027) (-2408.046) * [-2398.165] (-2410.276) (-2410.636) (-2404.321) -- 0:05:30 27000 -- [-2402.506] (-2409.182) (-2409.898) (-2406.950) * (-2407.700) [-2400.853] (-2405.908) (-2404.640) -- 0:06:00 27500 -- [-2401.428] (-2407.523) (-2414.620) (-2402.796) * [-2406.845] (-2399.373) (-2399.281) (-2404.664) -- 0:05:53 28000 -- [-2397.706] (-2412.526) (-2403.361) (-2404.676) * (-2410.663) (-2400.843) [-2402.034] (-2401.771) -- 0:05:47 28500 -- (-2401.080) (-2404.070) (-2401.866) [-2401.342] * (-2408.259) (-2410.848) [-2401.198] (-2403.282) -- 0:05:40 29000 -- [-2402.122] (-2404.774) (-2401.483) (-2404.641) * (-2405.813) [-2399.144] (-2407.117) (-2409.667) -- 0:05:34 29500 -- [-2395.693] (-2401.748) (-2402.155) (-2408.245) * (-2408.429) (-2406.890) (-2405.959) [-2412.618] -- 0:06:01 30000 -- (-2404.257) (-2411.898) [-2399.206] (-2407.002) * (-2406.304) (-2408.333) [-2399.049] (-2400.969) -- 0:05:55 Average standard deviation of split frequencies: 0.036893 30500 -- (-2404.348) (-2405.099) [-2403.213] (-2407.101) * (-2401.403) (-2410.527) (-2404.030) [-2398.714] -- 0:05:49 31000 -- (-2405.388) (-2402.202) [-2401.759] (-2410.127) * (-2409.233) [-2408.039] (-2399.140) (-2404.755) -- 0:05:43 31500 -- (-2404.062) (-2406.066) [-2406.339] (-2400.085) * (-2404.140) (-2405.563) [-2401.654] (-2408.939) -- 0:05:38 32000 -- (-2405.459) (-2406.613) [-2412.781] (-2396.141) * (-2402.924) [-2404.533] (-2411.086) (-2404.443) -- 0:05:32 32500 -- (-2407.888) [-2410.909] (-2407.022) (-2405.356) * (-2405.823) [-2400.999] (-2406.417) (-2403.541) -- 0:05:57 33000 -- (-2401.203) [-2405.362] (-2407.011) (-2410.665) * [-2403.608] (-2399.473) (-2406.880) (-2401.954) -- 0:05:51 33500 -- (-2404.325) (-2410.773) (-2397.613) [-2403.592] * (-2400.158) (-2398.760) (-2407.168) [-2401.778] -- 0:05:46 34000 -- (-2403.281) (-2398.974) [-2403.957] (-2408.948) * [-2401.996] (-2404.571) (-2405.722) (-2408.462) -- 0:05:40 34500 -- (-2409.534) [-2405.479] (-2404.824) (-2408.030) * (-2421.142) (-2401.586) (-2401.318) [-2403.815] -- 0:05:35 35000 -- (-2404.420) (-2400.125) (-2403.389) [-2408.519] * (-2404.030) [-2400.401] (-2399.108) (-2399.091) -- 0:05:30 Average standard deviation of split frequencies: 0.023570 35500 -- (-2404.973) (-2401.460) (-2405.270) [-2401.582] * (-2406.340) [-2398.412] (-2404.984) (-2399.744) -- 0:05:53 36000 -- (-2402.549) (-2401.347) [-2396.822] (-2398.657) * (-2409.811) (-2402.369) [-2406.304] (-2405.916) -- 0:05:48 36500 -- (-2409.833) [-2412.464] (-2401.503) (-2405.455) * (-2407.451) [-2402.420] (-2404.917) (-2410.234) -- 0:05:43 37000 -- (-2400.717) [-2404.517] (-2400.845) (-2407.543) * (-2407.024) (-2403.280) (-2401.245) [-2404.972] -- 0:05:38 37500 -- (-2400.346) [-2404.174] (-2405.195) (-2405.451) * [-2401.232] (-2410.236) (-2405.317) (-2403.279) -- 0:05:33 38000 -- [-2410.464] (-2401.789) (-2407.788) (-2406.256) * (-2398.883) (-2401.010) (-2404.216) [-2404.634] -- 0:05:54 38500 -- (-2405.054) (-2414.956) [-2397.503] (-2402.487) * [-2403.085] (-2401.223) (-2403.479) (-2397.727) -- 0:05:49 39000 -- (-2403.788) (-2400.990) [-2402.537] (-2405.569) * (-2399.217) [-2399.347] (-2402.542) (-2409.367) -- 0:05:44 39500 -- [-2397.034] (-2401.974) (-2410.950) (-2400.378) * (-2408.496) (-2405.849) [-2401.222] (-2402.709) -- 0:05:40 40000 -- (-2409.518) (-2403.037) [-2403.570] (-2406.467) * (-2401.527) [-2400.639] (-2403.905) (-2408.304) -- 0:05:36 Average standard deviation of split frequencies: 0.020865 40500 -- (-2402.144) (-2397.925) [-2399.693] (-2408.342) * [-2400.917] (-2398.013) (-2405.654) (-2405.003) -- 0:05:31 41000 -- (-2407.185) [-2398.580] (-2407.543) (-2407.192) * [-2405.730] (-2404.410) (-2401.040) (-2401.318) -- 0:05:50 41500 -- (-2400.389) (-2398.465) [-2401.812] (-2407.320) * (-2405.736) [-2403.129] (-2408.279) (-2401.362) -- 0:05:46 42000 -- (-2399.165) [-2400.301] (-2398.703) (-2405.716) * (-2400.768) [-2400.675] (-2401.771) (-2399.779) -- 0:05:42 42500 -- (-2399.560) (-2410.888) [-2402.752] (-2402.291) * [-2401.388] (-2395.870) (-2396.937) (-2397.682) -- 0:05:37 43000 -- (-2399.510) (-2403.237) [-2399.426] (-2406.371) * [-2399.967] (-2398.535) (-2401.805) (-2401.966) -- 0:05:33 43500 -- (-2401.250) (-2411.028) (-2402.584) [-2403.481] * [-2402.129] (-2398.381) (-2401.646) (-2399.110) -- 0:05:51 44000 -- [-2404.487] (-2401.126) (-2404.821) (-2403.580) * (-2403.306) [-2406.467] (-2407.708) (-2402.574) -- 0:05:47 44500 -- [-2400.580] (-2411.349) (-2403.320) (-2400.490) * (-2409.200) (-2398.652) [-2400.960] (-2403.548) -- 0:05:43 45000 -- (-2404.692) (-2403.173) (-2404.915) [-2402.567] * (-2404.185) (-2403.561) (-2398.509) [-2402.005] -- 0:05:39 Average standard deviation of split frequencies: 0.018446 45500 -- [-2400.407] (-2401.340) (-2405.715) (-2405.943) * (-2400.670) [-2401.701] (-2401.368) (-2402.008) -- 0:05:35 46000 -- (-2404.085) [-2403.234] (-2400.539) (-2406.120) * (-2402.252) (-2408.233) [-2401.281] (-2408.469) -- 0:05:31 46500 -- (-2396.984) [-2401.375] (-2398.427) (-2404.194) * (-2397.882) (-2405.199) (-2411.856) [-2401.257] -- 0:05:48 47000 -- (-2400.727) (-2399.492) [-2400.595] (-2416.545) * (-2399.242) (-2405.196) (-2409.127) [-2399.770] -- 0:05:44 47500 -- [-2400.320] (-2398.812) (-2399.692) (-2404.429) * (-2401.231) (-2407.674) [-2402.124] (-2405.505) -- 0:05:40 48000 -- (-2399.229) (-2399.906) (-2399.465) [-2401.207] * (-2404.814) (-2407.682) [-2400.481] (-2407.733) -- 0:05:37 48500 -- (-2405.302) (-2400.956) [-2403.713] (-2405.514) * (-2400.966) (-2405.126) (-2403.588) [-2403.756] -- 0:05:33 49000 -- (-2401.592) [-2403.245] (-2402.339) (-2402.034) * (-2398.884) (-2409.353) [-2404.714] (-2409.901) -- 0:05:29 49500 -- (-2399.290) (-2404.128) (-2407.056) [-2402.570] * (-2404.009) (-2404.070) [-2405.614] (-2410.600) -- 0:05:45 50000 -- (-2407.351) [-2398.448] (-2406.337) (-2402.123) * (-2406.990) (-2420.398) [-2398.668] (-2404.663) -- 0:05:42 Average standard deviation of split frequencies: 0.020469 50500 -- (-2406.445) (-2408.271) [-2403.682] (-2406.163) * (-2397.879) (-2404.206) (-2406.220) [-2404.373] -- 0:05:38 51000 -- (-2412.231) (-2404.780) [-2402.846] (-2409.439) * [-2404.500] (-2400.846) (-2401.871) (-2402.674) -- 0:05:34 51500 -- (-2404.253) [-2399.277] (-2418.644) (-2407.558) * (-2398.810) (-2411.444) [-2401.829] (-2402.043) -- 0:05:31 52000 -- (-2405.774) (-2403.314) (-2411.044) [-2398.117] * (-2405.656) (-2403.946) (-2403.090) [-2403.212] -- 0:05:28 52500 -- (-2407.112) [-2397.888] (-2410.740) (-2398.901) * [-2399.388] (-2408.117) (-2406.027) (-2405.204) -- 0:05:42 53000 -- (-2403.730) (-2408.742) (-2413.030) [-2407.760] * (-2408.270) (-2402.566) [-2402.483] (-2401.376) -- 0:05:39 53500 -- [-2407.069] (-2410.126) (-2409.384) (-2408.658) * (-2406.698) [-2401.688] (-2405.288) (-2407.856) -- 0:05:36 54000 -- (-2406.686) (-2405.736) [-2410.702] (-2412.589) * [-2397.627] (-2402.884) (-2404.774) (-2408.638) -- 0:05:32 54500 -- [-2404.115] (-2399.021) (-2402.835) (-2403.968) * (-2402.937) (-2405.854) [-2395.682] (-2404.555) -- 0:05:29 55000 -- (-2401.265) (-2402.629) (-2408.647) [-2402.840] * [-2406.794] (-2403.858) (-2401.381) (-2405.971) -- 0:05:43 Average standard deviation of split frequencies: 0.025254 55500 -- (-2399.099) (-2409.114) (-2402.642) [-2406.024] * (-2400.793) (-2399.631) (-2406.246) [-2400.046] -- 0:05:40 56000 -- (-2398.819) [-2402.732] (-2400.987) (-2415.870) * (-2408.044) [-2402.317] (-2408.434) (-2408.546) -- 0:05:37 56500 -- [-2399.790] (-2402.172) (-2411.877) (-2402.802) * (-2402.859) [-2401.166] (-2407.597) (-2403.229) -- 0:05:33 57000 -- [-2401.652] (-2401.515) (-2407.738) (-2401.096) * (-2404.615) [-2400.964] (-2411.612) (-2397.804) -- 0:05:30 57500 -- [-2403.566] (-2401.849) (-2404.096) (-2402.367) * [-2401.796] (-2405.280) (-2405.670) (-2398.703) -- 0:05:27 58000 -- (-2405.434) (-2409.509) (-2408.862) [-2397.958] * (-2399.372) [-2402.444] (-2405.212) (-2403.355) -- 0:05:41 58500 -- (-2410.069) [-2405.331] (-2408.095) (-2399.014) * (-2404.735) (-2403.734) (-2398.974) [-2399.492] -- 0:05:37 59000 -- (-2408.581) [-2399.561] (-2416.062) (-2408.856) * (-2402.479) [-2400.857] (-2401.866) (-2406.239) -- 0:05:34 59500 -- (-2405.900) (-2407.876) (-2404.952) [-2397.477] * (-2406.304) (-2405.906) (-2405.820) [-2402.583] -- 0:05:31 60000 -- (-2402.741) [-2401.655] (-2411.751) (-2400.140) * (-2403.691) (-2404.427) (-2400.740) [-2408.567] -- 0:05:29 Average standard deviation of split frequencies: 0.023311 60500 -- (-2399.668) (-2399.628) [-2402.901] (-2399.949) * (-2408.757) [-2404.569] (-2408.226) (-2404.087) -- 0:05:26 61000 -- (-2400.907) [-2404.786] (-2406.051) (-2410.565) * (-2418.905) (-2407.463) (-2404.526) [-2405.824] -- 0:05:38 61500 -- (-2398.453) (-2406.566) (-2401.415) [-2401.966] * (-2408.538) (-2409.276) (-2398.103) [-2408.692] -- 0:05:35 62000 -- [-2401.277] (-2410.524) (-2409.476) (-2410.090) * (-2405.700) [-2404.848] (-2403.237) (-2401.612) -- 0:05:32 62500 -- (-2400.605) [-2404.243] (-2404.712) (-2407.542) * (-2414.054) (-2403.065) (-2403.724) [-2398.225] -- 0:05:30 63000 -- (-2406.174) (-2400.713) (-2406.502) [-2405.309] * (-2411.213) (-2406.454) (-2404.667) [-2401.458] -- 0:05:27 63500 -- (-2411.792) [-2407.004] (-2399.432) (-2406.765) * (-2403.847) (-2407.763) (-2399.183) [-2405.972] -- 0:05:39 64000 -- [-2400.883] (-2403.824) (-2402.368) (-2406.798) * [-2400.349] (-2405.522) (-2405.937) (-2404.282) -- 0:05:36 64500 -- (-2403.000) [-2399.668] (-2409.552) (-2405.647) * [-2404.851] (-2408.819) (-2404.477) (-2408.111) -- 0:05:33 65000 -- (-2410.271) (-2405.376) (-2402.412) [-2401.276] * (-2401.095) (-2412.873) [-2402.095] (-2402.230) -- 0:05:30 Average standard deviation of split frequencies: 0.014285 65500 -- [-2401.034] (-2407.558) (-2395.659) (-2409.158) * (-2398.326) [-2408.187] (-2402.895) (-2397.637) -- 0:05:28 66000 -- (-2409.053) [-2405.485] (-2396.215) (-2406.269) * (-2403.800) (-2404.855) (-2405.743) [-2400.946] -- 0:05:25 66500 -- (-2405.164) (-2400.297) [-2395.580] (-2397.881) * [-2399.113] (-2399.516) (-2398.656) (-2400.910) -- 0:05:36 67000 -- [-2405.797] (-2404.651) (-2401.310) (-2402.144) * (-2399.187) (-2397.826) (-2406.282) [-2399.677] -- 0:05:34 67500 -- (-2413.959) (-2400.915) [-2404.532] (-2404.400) * (-2399.601) (-2402.190) (-2407.382) [-2400.559] -- 0:05:31 68000 -- [-2402.632] (-2410.718) (-2400.945) (-2412.231) * (-2406.727) (-2399.811) (-2404.640) [-2401.280] -- 0:05:28 68500 -- (-2399.395) (-2402.758) (-2403.599) [-2400.547] * [-2408.294] (-2407.760) (-2406.040) (-2398.909) -- 0:05:26 69000 -- (-2402.759) (-2404.433) [-2402.623] (-2398.233) * [-2402.295] (-2402.434) (-2402.425) (-2403.640) -- 0:05:23 69500 -- (-2396.141) (-2403.437) (-2404.822) [-2398.682] * (-2400.971) (-2402.724) (-2403.116) [-2403.369] -- 0:05:34 70000 -- (-2400.147) (-2401.124) [-2399.952] (-2402.421) * (-2411.898) (-2402.803) (-2409.428) [-2404.667] -- 0:05:32 Average standard deviation of split frequencies: 0.021347 70500 -- [-2402.930] (-2405.222) (-2398.719) (-2396.973) * (-2407.905) (-2409.846) [-2401.413] (-2400.375) -- 0:05:29 71000 -- (-2400.918) (-2401.837) [-2404.419] (-2399.595) * (-2412.849) (-2401.333) [-2403.236] (-2406.707) -- 0:05:27 71500 -- (-2403.201) (-2407.344) [-2399.648] (-2406.796) * (-2402.688) (-2403.705) [-2407.631] (-2409.254) -- 0:05:24 72000 -- (-2401.798) (-2414.377) (-2405.803) [-2403.725] * (-2400.866) [-2402.120] (-2401.355) (-2401.489) -- 0:05:22 72500 -- (-2412.984) [-2399.171] (-2403.655) (-2408.166) * (-2406.186) [-2398.914] (-2407.757) (-2403.978) -- 0:05:32 73000 -- (-2400.980) (-2404.601) (-2408.622) [-2403.305] * (-2405.255) (-2402.250) (-2410.327) [-2402.205] -- 0:05:30 73500 -- (-2412.365) (-2408.960) [-2403.327] (-2404.854) * [-2400.088] (-2401.277) (-2407.498) (-2409.031) -- 0:05:27 74000 -- (-2406.815) (-2397.123) (-2399.671) [-2404.496] * (-2408.637) [-2404.459] (-2406.516) (-2408.385) -- 0:05:25 74500 -- (-2410.863) [-2397.303] (-2409.590) (-2406.742) * [-2402.822] (-2400.496) (-2405.961) (-2411.273) -- 0:05:22 75000 -- (-2404.036) (-2402.003) (-2401.214) [-2405.418] * [-2405.317] (-2405.216) (-2406.107) (-2404.691) -- 0:05:33 Average standard deviation of split frequencies: 0.014886 75500 -- (-2401.910) [-2402.505] (-2402.990) (-2407.964) * (-2399.516) (-2404.449) (-2407.579) [-2398.728] -- 0:05:30 76000 -- (-2401.233) (-2400.096) (-2403.321) [-2408.610] * (-2405.123) (-2398.127) [-2404.137] (-2406.454) -- 0:05:28 76500 -- (-2399.128) [-2399.674] (-2410.198) (-2406.132) * (-2402.957) [-2397.365] (-2400.310) (-2403.172) -- 0:05:25 77000 -- (-2404.803) [-2406.253] (-2409.897) (-2401.079) * (-2402.716) [-2399.242] (-2400.223) (-2401.011) -- 0:05:23 77500 -- [-2404.832] (-2406.801) (-2415.711) (-2399.540) * (-2408.277) [-2400.762] (-2410.646) (-2407.601) -- 0:05:21 78000 -- (-2405.737) (-2410.978) (-2408.480) [-2397.351] * (-2406.086) (-2403.728) (-2405.722) [-2400.125] -- 0:05:30 78500 -- (-2400.679) (-2412.014) [-2406.806] (-2413.195) * (-2401.733) [-2404.479] (-2407.260) (-2400.598) -- 0:05:28 79000 -- (-2404.895) (-2409.185) [-2401.273] (-2403.176) * (-2400.014) (-2405.206) (-2415.514) [-2402.659] -- 0:05:26 79500 -- (-2408.455) (-2413.536) (-2403.070) [-2406.816] * (-2407.381) (-2406.384) (-2415.923) [-2403.169] -- 0:05:24 80000 -- (-2402.459) (-2404.849) [-2405.169] (-2402.481) * (-2401.238) (-2407.419) [-2405.740] (-2406.176) -- 0:05:22 Average standard deviation of split frequencies: 0.011688 80500 -- (-2409.635) (-2407.325) (-2404.951) [-2399.039] * (-2404.552) [-2401.041] (-2416.191) (-2406.224) -- 0:05:19 81000 -- [-2402.061] (-2402.284) (-2397.123) (-2397.686) * (-2403.760) [-2408.079] (-2404.123) (-2400.203) -- 0:05:29 81500 -- [-2405.034] (-2412.024) (-2401.605) (-2405.737) * (-2396.852) (-2403.137) (-2404.009) [-2399.777] -- 0:05:26 82000 -- [-2408.196] (-2404.438) (-2412.319) (-2403.831) * (-2406.324) [-2403.057] (-2408.683) (-2403.473) -- 0:05:24 82500 -- (-2401.227) [-2404.929] (-2413.054) (-2399.145) * (-2400.294) (-2411.143) [-2404.397] (-2403.364) -- 0:05:22 83000 -- [-2407.279] (-2415.764) (-2407.264) (-2408.151) * [-2400.194] (-2413.216) (-2410.342) (-2400.398) -- 0:05:20 83500 -- (-2399.383) [-2406.087] (-2403.143) (-2406.327) * (-2404.067) (-2418.781) (-2403.797) [-2404.077] -- 0:05:29 84000 -- (-2399.412) [-2406.983] (-2406.792) (-2402.204) * (-2400.859) (-2403.750) (-2408.508) [-2410.255] -- 0:05:27 84500 -- (-2407.258) [-2402.346] (-2408.358) (-2401.993) * [-2407.672] (-2399.394) (-2403.201) (-2401.943) -- 0:05:25 85000 -- [-2404.308] (-2403.952) (-2406.114) (-2400.447) * (-2406.219) (-2402.097) [-2405.347] (-2406.003) -- 0:05:22 Average standard deviation of split frequencies: 0.004385 85500 -- [-2403.306] (-2413.068) (-2409.739) (-2400.252) * (-2410.243) [-2398.182] (-2403.425) (-2407.348) -- 0:05:20 86000 -- (-2405.396) (-2402.995) (-2399.253) [-2401.341] * (-2404.363) [-2397.161] (-2400.827) (-2401.799) -- 0:05:18 86500 -- (-2406.383) (-2404.265) (-2401.987) [-2408.485] * [-2396.642] (-2400.199) (-2406.662) (-2405.080) -- 0:05:27 87000 -- (-2401.790) (-2404.069) [-2398.715] (-2401.160) * (-2398.410) [-2400.291] (-2405.804) (-2401.663) -- 0:05:25 87500 -- (-2400.349) (-2410.284) (-2406.613) [-2405.631] * [-2402.763] (-2399.253) (-2401.946) (-2399.527) -- 0:05:23 88000 -- [-2396.907] (-2409.094) (-2402.383) (-2406.526) * (-2401.888) [-2402.975] (-2414.043) (-2401.858) -- 0:05:21 88500 -- [-2404.252] (-2404.132) (-2402.906) (-2412.951) * (-2397.512) [-2406.543] (-2399.828) (-2404.482) -- 0:05:19 89000 -- (-2407.923) [-2401.153] (-2403.116) (-2405.062) * (-2401.913) [-2405.503] (-2394.019) (-2399.622) -- 0:05:17 89500 -- [-2399.545] (-2405.295) (-2410.838) (-2398.146) * [-2397.236] (-2408.712) (-2403.192) (-2410.221) -- 0:05:25 90000 -- (-2409.921) (-2400.660) (-2406.728) [-2397.789] * (-2399.868) [-2402.000] (-2407.530) (-2409.778) -- 0:05:23 Average standard deviation of split frequencies: 0.002080 90500 -- (-2405.632) (-2397.497) (-2407.219) [-2401.077] * (-2402.598) [-2411.951] (-2410.448) (-2403.416) -- 0:05:21 91000 -- [-2406.481] (-2403.630) (-2417.617) (-2404.998) * (-2404.275) (-2415.331) [-2408.535] (-2406.627) -- 0:05:19 91500 -- [-2403.120] (-2400.326) (-2404.843) (-2402.759) * [-2408.792] (-2401.243) (-2411.793) (-2407.198) -- 0:05:17 92000 -- (-2401.356) (-2410.578) (-2401.889) [-2405.541] * (-2404.274) [-2404.910] (-2412.226) (-2413.301) -- 0:05:25 92500 -- [-2402.333] (-2407.086) (-2407.236) (-2399.645) * (-2400.185) (-2407.656) [-2403.155] (-2410.100) -- 0:05:23 93000 -- [-2400.676] (-2409.124) (-2411.818) (-2403.369) * (-2405.295) (-2401.856) [-2403.868] (-2406.977) -- 0:05:21 93500 -- (-2409.302) (-2411.726) (-2404.398) [-2398.711] * (-2402.074) (-2407.469) (-2398.621) [-2405.809] -- 0:05:19 94000 -- [-2409.240] (-2403.235) (-2398.415) (-2404.793) * (-2405.079) (-2399.499) [-2404.028] (-2401.989) -- 0:05:18 94500 -- (-2407.534) (-2403.051) (-2400.598) [-2400.172] * (-2402.109) (-2405.612) (-2403.616) [-2400.282] -- 0:05:16 95000 -- (-2399.158) (-2397.449) [-2400.721] (-2400.421) * (-2407.549) (-2400.542) (-2407.446) [-2400.397] -- 0:05:23 Average standard deviation of split frequencies: 0.005893 95500 -- (-2396.072) [-2403.707] (-2402.971) (-2401.183) * (-2400.038) [-2398.798] (-2402.544) (-2407.262) -- 0:05:22 96000 -- [-2399.304] (-2403.140) (-2406.152) (-2408.069) * (-2400.759) [-2398.734] (-2409.954) (-2401.462) -- 0:05:20 96500 -- (-2402.895) [-2406.922] (-2401.678) (-2400.840) * [-2407.811] (-2411.487) (-2408.012) (-2408.773) -- 0:05:18 97000 -- (-2400.563) (-2405.753) (-2407.527) [-2399.877] * [-2406.355] (-2398.380) (-2409.446) (-2400.532) -- 0:05:16 97500 -- (-2403.032) (-2403.824) (-2404.331) [-2405.313] * [-2404.156] (-2402.402) (-2408.613) (-2406.573) -- 0:05:14 98000 -- [-2400.905] (-2403.918) (-2414.970) (-2398.164) * (-2404.771) (-2406.897) [-2404.050] (-2408.576) -- 0:05:22 98500 -- (-2404.430) [-2400.706] (-2407.755) (-2405.747) * [-2406.900] (-2408.323) (-2402.137) (-2407.115) -- 0:05:20 99000 -- (-2406.559) (-2407.117) (-2404.802) [-2398.006] * (-2414.173) (-2404.683) [-2410.100] (-2407.328) -- 0:05:18 99500 -- [-2401.518] (-2408.416) (-2400.970) (-2404.022) * [-2406.322] (-2408.667) (-2399.928) (-2409.990) -- 0:05:16 100000 -- [-2399.867] (-2410.943) (-2399.621) (-2398.516) * [-2401.668] (-2410.643) (-2407.773) (-2409.289) -- 0:05:15 Average standard deviation of split frequencies: 0.001873 100500 -- [-2399.247] (-2413.485) (-2408.504) (-2405.615) * (-2404.807) (-2405.445) (-2408.629) [-2407.212] -- 0:05:22 101000 -- (-2408.581) (-2406.429) [-2394.939] (-2400.941) * (-2407.674) (-2404.664) (-2400.487) [-2401.337] -- 0:05:20 101500 -- (-2407.424) (-2408.315) [-2398.609] (-2395.718) * (-2398.548) (-2405.405) (-2404.830) [-2404.677] -- 0:05:18 102000 -- (-2401.900) (-2400.753) [-2404.184] (-2403.516) * (-2405.032) (-2404.884) (-2409.473) [-2398.243] -- 0:05:16 102500 -- (-2404.377) (-2401.232) (-2404.371) [-2402.082] * [-2402.351] (-2405.942) (-2404.974) (-2399.887) -- 0:05:15 103000 -- [-2403.137] (-2401.260) (-2409.235) (-2407.242) * (-2405.337) (-2402.714) [-2403.398] (-2406.591) -- 0:05:13 103500 -- (-2405.623) (-2406.008) (-2404.123) [-2407.123] * (-2400.481) (-2400.066) [-2401.550] (-2399.217) -- 0:05:20 104000 -- (-2403.278) [-2400.604] (-2401.576) (-2403.300) * [-2399.271] (-2398.848) (-2399.584) (-2402.895) -- 0:05:18 104500 -- (-2414.172) (-2403.934) [-2399.160] (-2408.515) * (-2412.240) (-2405.703) [-2405.997] (-2401.188) -- 0:05:17 105000 -- [-2401.964] (-2409.681) (-2402.456) (-2411.493) * (-2412.636) (-2403.132) (-2406.384) [-2401.364] -- 0:05:15 Average standard deviation of split frequencies: 0.001779 105500 -- (-2403.651) [-2402.490] (-2405.263) (-2406.893) * (-2413.099) [-2400.492] (-2403.949) (-2406.511) -- 0:05:13 106000 -- (-2399.462) [-2409.315] (-2404.086) (-2413.147) * (-2410.685) (-2402.330) [-2402.506] (-2408.731) -- 0:05:20 106500 -- (-2404.191) (-2408.858) [-2404.766] (-2406.357) * (-2400.774) [-2402.552] (-2407.309) (-2400.818) -- 0:05:18 107000 -- (-2411.698) (-2405.466) [-2406.966] (-2403.262) * (-2413.504) [-2400.980] (-2408.906) (-2416.256) -- 0:05:17 107500 -- (-2407.897) (-2399.621) (-2403.208) [-2404.287] * [-2400.739] (-2404.487) (-2409.567) (-2403.834) -- 0:05:15 108000 -- (-2405.262) (-2402.149) (-2398.157) [-2398.532] * [-2406.796] (-2406.516) (-2404.554) (-2405.603) -- 0:05:13 108500 -- (-2411.594) (-2401.893) [-2397.794] (-2405.428) * (-2401.286) (-2401.323) [-2401.936] (-2408.776) -- 0:05:12 109000 -- (-2404.500) (-2402.559) (-2404.392) [-2400.204] * [-2404.787] (-2407.718) (-2402.526) (-2407.576) -- 0:05:18 109500 -- (-2404.261) (-2406.992) (-2412.018) [-2400.229] * (-2402.522) [-2412.326] (-2409.933) (-2400.094) -- 0:05:17 110000 -- [-2398.829] (-2406.933) (-2406.479) (-2404.916) * (-2406.663) (-2404.548) [-2405.955] (-2407.194) -- 0:05:15 Average standard deviation of split frequencies: 0.001704 110500 -- [-2396.637] (-2405.760) (-2405.260) (-2400.755) * [-2401.034] (-2414.497) (-2412.947) (-2405.340) -- 0:05:13 111000 -- (-2407.222) (-2411.800) [-2401.200] (-2404.039) * (-2407.199) [-2411.162] (-2402.977) (-2413.444) -- 0:05:12 111500 -- (-2406.467) (-2408.660) [-2406.060] (-2403.039) * [-2400.640] (-2401.262) (-2409.956) (-2403.748) -- 0:05:10 112000 -- (-2406.512) [-2405.902] (-2406.000) (-2403.391) * (-2406.104) [-2404.652] (-2407.593) (-2405.371) -- 0:05:17 112500 -- (-2404.343) (-2411.674) (-2396.945) [-2405.813] * (-2403.250) [-2399.846] (-2404.434) (-2403.697) -- 0:05:15 113000 -- (-2402.951) (-2404.946) (-2402.836) [-2403.563] * (-2401.572) (-2403.878) (-2403.285) [-2404.913] -- 0:05:13 113500 -- [-2405.131] (-2412.031) (-2399.925) (-2404.929) * [-2400.620] (-2410.835) (-2403.700) (-2404.566) -- 0:05:12 114000 -- [-2403.270] (-2405.160) (-2410.020) (-2400.117) * (-2402.069) (-2400.730) (-2401.292) [-2398.087] -- 0:05:10 114500 -- (-2410.360) [-2402.030] (-2403.301) (-2405.896) * (-2405.845) (-2404.605) [-2403.822] (-2406.697) -- 0:05:17 115000 -- (-2407.651) (-2410.385) (-2405.382) [-2403.498] * [-2404.312] (-2404.670) (-2409.607) (-2404.038) -- 0:05:15 Average standard deviation of split frequencies: 0.003251 115500 -- (-2398.360) (-2406.530) (-2400.902) [-2403.410] * (-2403.852) (-2402.008) (-2404.309) [-2409.171] -- 0:05:13 116000 -- [-2397.009] (-2405.400) (-2400.504) (-2407.124) * (-2401.939) [-2403.523] (-2403.309) (-2405.295) -- 0:05:12 116500 -- [-2397.261] (-2405.266) (-2402.186) (-2398.359) * [-2400.841] (-2405.460) (-2405.041) (-2400.170) -- 0:05:10 117000 -- (-2403.054) (-2400.495) [-2399.910] (-2403.429) * (-2407.900) (-2395.302) [-2404.833] (-2405.792) -- 0:05:09 117500 -- (-2405.683) (-2398.885) [-2398.244] (-2401.275) * (-2403.252) (-2396.422) [-2402.150] (-2404.069) -- 0:05:15 118000 -- [-2399.564] (-2400.790) (-2408.696) (-2404.568) * (-2405.418) (-2406.665) (-2406.041) [-2400.408] -- 0:05:13 118500 -- [-2402.142] (-2405.006) (-2407.668) (-2400.480) * [-2406.535] (-2405.434) (-2402.176) (-2406.882) -- 0:05:12 119000 -- (-2404.224) (-2400.929) [-2401.190] (-2405.693) * [-2403.011] (-2408.755) (-2403.127) (-2398.680) -- 0:05:10 119500 -- (-2403.765) [-2404.677] (-2408.671) (-2402.228) * (-2400.919) [-2401.069] (-2401.982) (-2406.406) -- 0:05:09 120000 -- (-2411.958) [-2406.096] (-2411.999) (-2406.917) * (-2399.557) [-2402.939] (-2404.736) (-2405.705) -- 0:05:08 Average standard deviation of split frequencies: 0.001563 120500 -- (-2406.936) (-2408.303) (-2403.295) [-2398.771] * (-2407.783) [-2401.806] (-2404.948) (-2403.155) -- 0:05:13 121000 -- (-2405.017) (-2402.590) (-2409.768) [-2403.095] * (-2403.392) [-2404.944] (-2396.396) (-2408.426) -- 0:05:12 121500 -- (-2405.338) (-2406.219) (-2401.828) [-2402.587] * (-2401.147) [-2403.914] (-2397.109) (-2407.916) -- 0:05:10 122000 -- (-2403.469) (-2412.396) (-2415.009) [-2407.441] * [-2399.566] (-2405.565) (-2406.315) (-2410.195) -- 0:05:09 122500 -- (-2411.848) (-2407.697) (-2396.294) [-2396.602] * (-2400.426) (-2408.922) (-2399.806) [-2400.622] -- 0:05:08 123000 -- (-2405.563) [-2397.835] (-2405.231) (-2398.146) * (-2400.773) (-2409.749) (-2405.210) [-2405.076] -- 0:05:13 123500 -- [-2397.031] (-2413.981) (-2404.620) (-2400.513) * [-2398.874] (-2411.306) (-2407.861) (-2404.473) -- 0:05:12 124000 -- (-2397.562) (-2409.055) [-2399.174] (-2401.922) * (-2414.153) (-2409.471) (-2403.380) [-2403.771] -- 0:05:10 124500 -- (-2403.991) (-2405.689) (-2401.938) [-2399.081] * (-2410.487) [-2402.278] (-2408.428) (-2401.911) -- 0:05:09 125000 -- [-2405.204] (-2402.947) (-2401.847) (-2402.222) * (-2409.173) (-2398.930) (-2405.822) [-2398.386] -- 0:05:08 Average standard deviation of split frequencies: 0.008979 125500 -- (-2400.039) [-2409.059] (-2402.338) (-2411.093) * (-2412.546) [-2401.988] (-2406.469) (-2405.862) -- 0:05:06 126000 -- (-2399.850) (-2407.066) [-2400.580] (-2401.339) * (-2405.841) [-2396.126] (-2403.936) (-2406.003) -- 0:05:12 126500 -- (-2411.178) (-2408.697) (-2408.214) [-2403.116] * (-2409.838) (-2403.804) [-2404.887] (-2409.370) -- 0:05:10 127000 -- (-2406.563) (-2406.733) (-2403.946) [-2405.831] * [-2397.876] (-2403.001) (-2403.852) (-2401.746) -- 0:05:09 127500 -- (-2404.550) [-2407.357] (-2407.212) (-2401.691) * [-2400.585] (-2403.335) (-2405.745) (-2404.060) -- 0:05:07 128000 -- (-2396.213) [-2400.606] (-2400.235) (-2401.997) * [-2398.476] (-2411.696) (-2409.058) (-2408.104) -- 0:05:06 128500 -- (-2400.639) (-2405.188) [-2400.648] (-2400.308) * [-2402.341] (-2399.391) (-2404.632) (-2410.078) -- 0:05:05 129000 -- [-24