--- EXPERIMENT NOTES
--- EXPERIMENT PROPERTIES
#Thu Nov 10 15:47:17 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/181/CG7115-PD/input.fasta
input.names=
mrbayes.params=
codeml.params=
--- PSRF SUMMARY
Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)
(Values are saved to the file /opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)
Run Arithmetic mean Harmonic mean
--------------------------------------
1 -4875.05 -4889.93
2 -4874.74 -4892.69
--------------------------------------
TOTAL -4874.88 -4892.06
--------------------------------------
Model parameter summaries over the runs sampled in files
"/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".
95% HPD Interval
--------------------
Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+
------------------------------------------------------------------------------------------------------
TL{all} 0.959613 0.004821 0.828526 1.095842 0.957085 1275.84 1388.42 1.000
r(A<->C){all} 0.086608 0.000178 0.061522 0.112355 0.085842 915.34 1038.02 1.000
r(A<->G){all} 0.230688 0.000617 0.184069 0.280502 0.229102 929.76 1016.44 1.000
r(A<->T){all} 0.083356 0.000272 0.050972 0.115549 0.082642 1014.96 1105.99 1.000
r(C<->G){all} 0.060626 0.000115 0.040562 0.082548 0.060159 899.43 1015.49 1.000
r(C<->T){all} 0.469613 0.000998 0.408027 0.528957 0.469794 874.23 895.86 1.000
r(G<->T){all} 0.069110 0.000185 0.044442 0.097499 0.068380 1207.92 1236.81 1.000
pi(A){all} 0.263309 0.000132 0.240820 0.285524 0.263404 1035.54 1154.97 1.000
pi(C){all} 0.260112 0.000116 0.239479 0.280941 0.259902 1073.36 1143.66 1.000
pi(G){all} 0.282580 0.000131 0.261269 0.305702 0.282622 692.92 903.29 1.000
pi(T){all} 0.193998 0.000093 0.175802 0.212875 0.193829 975.45 1078.45 1.000
alpha{1,2} 0.153826 0.000225 0.124512 0.182547 0.152922 1409.80 1455.40 1.000
alpha{3} 3.939223 0.934930 2.234747 5.877338 3.811147 1199.83 1333.89 1.001
pinvar{all} 0.333563 0.001439 0.258221 0.402459 0.333646 1188.06 1263.97 1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.
Setting sumt conformat to Simple
--- CODEML SUMMARY
Model 1: NearlyNeutral -4579.698767
Model 2: PositiveSelection -4578.209913
Model 0: one-ratio -4611.932697
Model 3: discrete -4574.830921
Model 7: beta -4581.953361
Model 8: beta&w>1 -4576.16763
Model 0 vs 1 64.46786000000066
Model 2 vs 1 2.977708000000348
Model 8 vs 7 11.571461999999883
Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PD)
Pr(w>1) post mean +- SE for w
128 N 0.999** 4.744
Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PD)
Pr(w>1) post mean +- SE for w
6 R 0.671 1.240 +- 0.603
9 L 0.767 1.375 +- 0.617
128 N 0.989* 1.684 +- 0.721
159 M 0.646 1.204 +- 0.580
224 N 0.659 1.227 +- 0.546
>C1
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE
NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIEHGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C2
MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE
NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGKESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C3
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEDSLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C4
MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA
SGNMGSAKESFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSTGRAGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C5
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNMGAAKESFLNNNNNAQSGAGSAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGRAGEESLKV
PAKPQPVAPAVVQRSNSIKTKoo
>C6
MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE
NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGAGSAPPPNYEARCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIGSSAGKVGDETLKI
PAKSQAVAPAVVQRSNSIKTKoo
>C7
MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE
NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAPNGAGHAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGDETLKV
PAKSQPVASAVVQRSNSIKTKoo
>C8
MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE
NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD
EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR
GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGDESLK
VPAKSQPVAPAVVQRSNSIKTKo
>C9
MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE
NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD
EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL
KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL
KVPAKSQPVAPAVVQRSNSIKTK
>C10
MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHLK
ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=475
C1 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C2 MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C3 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C4 MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C5 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS
C6 MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C7 MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C8 MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C9 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C10 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
** *:: * ***:**********************.*:**:*********
C1 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C2 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C3 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C4 WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C5 WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA
C6 WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C7 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C8 WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C9 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C10 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
***::********************:************************
C1 ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE
C2 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE
C3 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE
C4 ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE
C5 ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
C6 ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE
C7 ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE
C8 ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE
C9 ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE
C10 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
*************:**** :****:** ..************.**::***
C1 NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C2 NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA
C3 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C4 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA
C5 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C6 NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA
C7 NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C8 NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C9 NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C10 NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
*:****.: *******: .**********:******.***..********
C1 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIEHGRINFGKLITD
C2 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD
C3 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD
C4 SGNMGSAKESFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD
C5 SGNMGAAKESFLNNNNNAQSG-AGSAPPPNYEAKCYIENGRINFGKLITD
C6 SGNVGAAKDSFLNNNNNAQNG-AGSAPPPNYEARCYIENGRINFGKLITD
C7 SGNVGAAKDSFLNNNNNAPNG-AGHAPPPNYEAKCYIENGRINFGKLITD
C8 SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD
C9 SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD
C10 SGNVGAAKDSFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD
***:*:**::*******. .* *. ********:****:***********
C1 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C2 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C3 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C4 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C5 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C6 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C7 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C8 EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR
C9 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C10 EIMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSR
***:***********************:******************** *
C1 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C2 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C3 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C4 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C5 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C6 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C7 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C8 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C9 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C10 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
**************************************************
C1 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C2 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C3 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C4 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C5 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C6 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C7 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C8 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C9 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL
C10 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHL
*****************************************:***. ***
C1 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEESL
C2 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGKESL
C3 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEDSL
C4 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSTGRAGEESL
C5 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGRAGEESL
C6 KEPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIG-SSAGKVGDETL
C7 KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGDETL
C8 KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGDESL
C9 KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL
C10 KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGEESL
**.*:*****.*********************.**:** *::*:.*.::*
C1 KVPAKSQPVAPAVVQRSNSIKTKoo
C2 KVPAKSQPVAPAVVQRSNSIKTKoo
C3 KVPAKSQPVAPAVVQRSNSIKTKoo
C4 KVPAKSQPVAPAVVQRSNSIKTKoo
C5 KVPAKPQPVAPAVVQRSNSIKTKoo
C6 KIPAKSQAVAPAVVQRSNSIKTKoo
C7 KVPAKSQPVASAVVQRSNSIKTKoo
C8 KVPAKSQPVAPAVVQRSNSIKTKo-
C9 KVPAKSQPVAPAVVQRSNSIKTK--
C10 KVPAKSQPVAPAVVQRSNSIKTKoo
*:***.*.**.************
PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log S [0]
-genepred_score S [0] nsd
-run_name S [0]
-mem_mode S [0] mem
-extend D [1] 1
-extend_mode S [0] very_fast_triplet
-max_n_pair D [0] 10
-seq_name_for_quadruplet S [0] all
-compact S [0] default
-clean S [0] no
-do_self FL [0] 0
-do_normalise D [0] 1000
-template_file S [0]
-setenv S [0] 0
-template_mode S [0]
-flip D [0] 0
-remove_template_file D [0] 0
-profile_template_file S [0]
-in S [0]
-seq S [0]
-aln S [0]
-method_limits S [0]
-method S [0]
-lib S [0]
-profile S [0]
-profile1 S [0]
-profile2 S [0]
-pdb S [0]
-relax_lib D [0] 1
-filter_lib D [0] 0
-shrink_lib D [0] 0
-out_lib W_F [0] no
-out_lib_mode S [0] primary
-lib_only D [0] 0
-outseqweight W_F [0] no
-dpa FL [0] 0
-seq_source S [0] ANY
-cosmetic_penalty D [0] 0
-gapopen D [0] 0
-gapext D [0] 0
-fgapopen D [0] 0
-fgapext D [0] 0
-nomatch D [0] 0
-newtree W_F [0] default
-tree W_F [0] NO
-usetree R_F [0]
-tree_mode S [0] nj
-distance_matrix_mode S [0] ktup
-distance_matrix_sim_mode S [0] idmat_sim1
-quicktree FL [0] 0
-outfile W_F [0] default
-maximise FL [1] 1
-output S [1] score_ascii html score_ascii
-len D [0] 0
-infile R_F [1] /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix S [0] default
-tg_mode D [0] 1
-profile_mode S [0] cw_profile_profile
-profile_comparison S [0] profile
-dp_mode S [0] linked_pair_wise
-ktuple D [0] 1
-ndiag D [0] 0
-diag_threshold D [0] 0
-diag_mode D [0] 0
-sim_matrix S [0] vasiliky
-transform S [0]
-extend_seq FL [0] 0
-outorder S [0] input
-inorder S [0] aligned
-seqnos S [0] off
-case S [0] keep
-cpu D [0] 0
-maxnseq D [0] 1000
-maxlen D [0] -1
-sample_dp D [0] 0
-weight S [0] default
-seq_weight S [0] no
-align FL [1] 1
-mocca FL [0] 0
-domain FL [0] 0
-start D [0] 0
-len D [0] 0
-scale D [0] 0
-mocca_interactive FL [0] 0
-method_evaluate_mode S [0] default
-evaluate_mode S [1] t_coffee_fast
-get_type FL [0] 0
-clean_aln D [0] 0
-clean_threshold D [1] 1
-clean_iteration D [1] 1
-clean_evaluate_mode S [0] t_coffee_fast
-extend_matrix FL [0] 0
-prot_min_sim D [40] 40
-prot_max_sim D [90] 90
-prot_min_cov D [40] 40
-pdb_type S [0] d
-pdb_min_sim D [35] 35
-pdb_max_sim D [100] 100
-pdb_min_cov D [50] 50
-pdb_blast_server W_F [0] EBI
-blast W_F [0]
-blast_server W_F [0] EBI
-pdb_db W_F [0] pdb
-protein_db W_F [0] uniprot
-method_log W_F [0] no
-struc_to_use S [0]
-cache W_F [0] use
-align_pdb_param_file W_F [0] no
-align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble
-external_aligner S [0] NO
-msa_mode S [0] tree
-master S [0] no
-blast_nseq D [0] 0
-lalign_n_top D [0] 10
-iterate D [1] 0
-trim D [0] 0
-split D [0] 0
-trimfile S [0] default
-split D [0] 0
-split_nseq_thres D [0] 0
-split_score_thres D [0] 0
-check_pdb_status D [0] 0
-clean_seq_name D [0] 0
-seq_to_keep S [0]
-dpa_master_aln S [0]
-dpa_maxnseq D [0] 0
-dpa_min_score1 D [0]
-dpa_min_score2 D [0]
-dpa_keep_tmpfile FL [0] 0
-dpa_debug D [0] 0
-multi_core S [0] templates_jobs_relax_msa_evaluate
-n_core D [0] 0
-max_n_proc D [0] 0
-lib_list S [0]
-prune_lib_mode S [0] 5
-tip S [0] none
-rna_lib S [0]
-no_warning D [0] 0
-run_local_script D [0] 0
-plugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
lugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked
Multi Core Mode: 72 processors:
--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default
-proxy S [0] unset
-email S [0]
-clean_overaln D [0] 0
-overaln_param S [0]
-overaln_mode S [0]
-overaln_model S [0]
-overaln_threshold D [0] 0
-overaln_target D [0] 0
-overaln_P1 D [0] 0
-overaln_P2 D [0] 0
-overaln_P3 D [0] 0
-overaln_P4 D [0] 0
-exon_boundaries S [0]
-dump S [0] no
-display D [0] 100
INPUT FILES
Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln
Input File (M) proba_pair
Identify Master Sequences [no]:
Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES [PROTEIN]
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked
Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C 