--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Thu Nov 10 15:47:17 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/181/CG7115-PD/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -4875.05         -4889.93
2      -4874.74         -4892.69
--------------------------------------
TOTAL    -4874.88         -4892.06
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.959613    0.004821    0.828526    1.095842    0.957085   1275.84   1388.42    1.000
r(A<->C){all}   0.086608    0.000178    0.061522    0.112355    0.085842    915.34   1038.02    1.000
r(A<->G){all}   0.230688    0.000617    0.184069    0.280502    0.229102    929.76   1016.44    1.000
r(A<->T){all}   0.083356    0.000272    0.050972    0.115549    0.082642   1014.96   1105.99    1.000
r(C<->G){all}   0.060626    0.000115    0.040562    0.082548    0.060159    899.43   1015.49    1.000
r(C<->T){all}   0.469613    0.000998    0.408027    0.528957    0.469794    874.23    895.86    1.000
r(G<->T){all}   0.069110    0.000185    0.044442    0.097499    0.068380   1207.92   1236.81    1.000
pi(A){all}      0.263309    0.000132    0.240820    0.285524    0.263404   1035.54   1154.97    1.000
pi(C){all}      0.260112    0.000116    0.239479    0.280941    0.259902   1073.36   1143.66    1.000
pi(G){all}      0.282580    0.000131    0.261269    0.305702    0.282622    692.92    903.29    1.000
pi(T){all}      0.193998    0.000093    0.175802    0.212875    0.193829    975.45   1078.45    1.000
alpha{1,2}      0.153826    0.000225    0.124512    0.182547    0.152922   1409.80   1455.40    1.000
alpha{3}        3.939223    0.934930    2.234747    5.877338    3.811147   1199.83   1333.89    1.001
pinvar{all}     0.333563    0.001439    0.258221    0.402459    0.333646   1188.06   1263.97    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4579.698767
Model 2: PositiveSelection	-4578.209913
Model 0: one-ratio	-4611.932697
Model 3: discrete	-4574.830921
Model 7: beta	-4581.953361
Model 8: beta&w>1	-4576.16763


Model 0 vs 1	64.46786000000066

Model 2 vs 1	2.977708000000348

Model 8 vs 7	11.571461999999883

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PD)

            Pr(w>1)     post mean +- SE for w

   128 N      0.999**       4.744

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PD)

            Pr(w>1)     post mean +- SE for w

     6 R      0.671         1.240 +- 0.603
     9 L      0.767         1.375 +- 0.617
   128 N      0.989*        1.684 +- 0.721
   159 M      0.646         1.204 +- 0.580
   224 N      0.659         1.227 +- 0.546

>C1
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE
NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIEHGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C2
MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE
NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGKESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C3
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEDSLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C4
MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA
SGNMGSAKESFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSTGRAGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
>C5
MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
SGNMGAAKESFLNNNNNAQSGAGSAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGRAGEESLKV
PAKPQPVAPAVVQRSNSIKTKoo
>C6
MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE
NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGAGSAPPPNYEARCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
EPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIGSSAGKVGDETLKI
PAKSQAVAPAVVQRSNSIKTKoo
>C7
MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE
NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAPNGAGHAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK
ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGDETLKV
PAKSQPVASAVVQRSNSIKTKoo
>C8
MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE
NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD
EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR
GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGDESLK
VPAKSQPVAPAVVQRSNSIKTKo
>C9
MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE
NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD
EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL
KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL
KVPAKSQPVAPAVVQRSNSIKTK
>C10
MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
SGNVGAAKDSFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE
IMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSRG
IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL
KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHLK
ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGEESLKV
PAKSQPVAPAVVQRSNSIKTKoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=475 

C1              MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C2              MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C3              MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C4              MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS
C5              MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS
C6              MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C7              MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C8              MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C9              MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
C10             MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS
                ** *:: * ***:**********************.*:**:*********

C1              WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C2              WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C3              WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C4              WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C5              WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA
C6              WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C7              WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C8              WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C9              WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
C10             WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA
                ***::********************:************************

C1              ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE
C2              ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE
C3              ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE
C4              ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE
C5              ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
C6              ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE
C7              ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE
C8              ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE
C9              ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE
C10             ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE
                *************:**** :****:** ..************.**::***

C1              NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C2              NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA
C3              NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C4              NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA
C5              NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA
C6              NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA
C7              NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C8              NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C9              NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
C10             NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA
                *:****.: *******: .**********:******.***..********

C1              SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIEHGRINFGKLITD
C2              SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD
C3              SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD
C4              SGNMGSAKESFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD
C5              SGNMGAAKESFLNNNNNAQSG-AGSAPPPNYEAKCYIENGRINFGKLITD
C6              SGNVGAAKDSFLNNNNNAQNG-AGSAPPPNYEARCYIENGRINFGKLITD
C7              SGNVGAAKDSFLNNNNNAPNG-AGHAPPPNYEAKCYIENGRINFGKLITD
C8              SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD
C9              SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD
C10             SGNVGAAKDSFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD
                ***:*:**::*******. .* *. ********:****:***********

C1              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C2              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C3              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C4              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C5              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR
C6              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C7              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C8              EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR
C9              EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR
C10             EIMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSR
                ***:***********************:******************** *

C1              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C2              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C3              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C4              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C5              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C6              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C7              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C8              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C9              GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
C10             GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP
                **************************************************

C1              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C2              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C3              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL
C4              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C5              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C6              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C7              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C8              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL
C9              LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL
C10             LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHL
                *****************************************:***. ***

C1              KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEESL
C2              KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGKESL
C3              KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEDSL
C4              KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSTGRAGEESL
C5              KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGRAGEESL
C6              KEPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIG-SSAGKVGDETL
C7              KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGDETL
C8              KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGDESL
C9              KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL
C10             KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGEESL
                **.*:*****.*********************.**:** *::*:.*.::*

C1              KVPAKSQPVAPAVVQRSNSIKTKoo
C2              KVPAKSQPVAPAVVQRSNSIKTKoo
C3              KVPAKSQPVAPAVVQRSNSIKTKoo
C4              KVPAKSQPVAPAVVQRSNSIKTKoo
C5              KVPAKPQPVAPAVVQRSNSIKTKoo
C6              KIPAKSQAVAPAVVQRSNSIKTKoo
C7              KVPAKSQPVASAVVQRSNSIKTKoo
C8              KVPAKSQPVAPAVVQRSNSIKTKo-
C9              KVPAKSQPVAPAVVQRSNSIKTK--
C10             KVPAKSQPVAPAVVQRSNSIKTKoo
                *:***.*.**.************  




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  473 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  473 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C