--- EXPERIMENT NOTES --- EXPERIMENT PROPERTIES #Thu Nov 10 15:47:17 WET 2016 codeml.models=0 1 2 3 7 8 mrbayes.mpich= mrbayes.ngen=1000000 tcoffee.alignMethod=CLUSTALW2 tcoffee.params= tcoffee.maxSeqs=0 codeml.bin=codeml mrbayes.tburnin=2500 codeml.dir= input.sequences= mrbayes.pburnin=2500 mrbayes.bin=mb_adops tcoffee.bin=t_coffee_ADOPS mrbayes.dir=/usr/bin/ tcoffee.dir= tcoffee.minScore=3 input.fasta=/opt/ADOPS/181/CG7115-PD/input.fasta input.names= mrbayes.params= codeml.params= --- PSRF SUMMARY Estimated marginal likelihoods for runs sampled in files "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": (Use the harmonic mean for Bayes factor comparisons of models) (Values are saved to the file /opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat) Run Arithmetic mean Harmonic mean -------------------------------------- 1 -4875.05 -4889.93 2 -4874.74 -4892.69 -------------------------------------- TOTAL -4874.88 -4892.06 -------------------------------------- Model parameter summaries over the runs sampled in files "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p": Summaries are based on a total of 3002 samples from 2 runs. Each run produced 2001 samples of which 1501 samples were included. Parameter summaries saved to file "/opt/ADOPS/181/CG7115-PD/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat". 95% HPD Interval -------------------- Parameter Mean Variance Lower Upper Median min ESS* avg ESS PSRF+ ------------------------------------------------------------------------------------------------------ TL{all} 0.959613 0.004821 0.828526 1.095842 0.957085 1275.84 1388.42 1.000 r(A<->C){all} 0.086608 0.000178 0.061522 0.112355 0.085842 915.34 1038.02 1.000 r(A<->G){all} 0.230688 0.000617 0.184069 0.280502 0.229102 929.76 1016.44 1.000 r(A<->T){all} 0.083356 0.000272 0.050972 0.115549 0.082642 1014.96 1105.99 1.000 r(C<->G){all} 0.060626 0.000115 0.040562 0.082548 0.060159 899.43 1015.49 1.000 r(C<->T){all} 0.469613 0.000998 0.408027 0.528957 0.469794 874.23 895.86 1.000 r(G<->T){all} 0.069110 0.000185 0.044442 0.097499 0.068380 1207.92 1236.81 1.000 pi(A){all} 0.263309 0.000132 0.240820 0.285524 0.263404 1035.54 1154.97 1.000 pi(C){all} 0.260112 0.000116 0.239479 0.280941 0.259902 1073.36 1143.66 1.000 pi(G){all} 0.282580 0.000131 0.261269 0.305702 0.282622 692.92 903.29 1.000 pi(T){all} 0.193998 0.000093 0.175802 0.212875 0.193829 975.45 1078.45 1.000 alpha{1,2} 0.153826 0.000225 0.124512 0.182547 0.152922 1409.80 1455.40 1.000 alpha{3} 3.939223 0.934930 2.234747 5.877338 3.811147 1199.83 1333.89 1.001 pinvar{all} 0.333563 0.001439 0.258221 0.402459 0.333646 1188.06 1263.97 1.000 ------------------------------------------------------------------------------------------------------ * Convergence diagnostic (ESS = Estimated Sample Size); min and avg values correspond to minimal and average ESS among runs. ESS value below 100 may indicate that the parameter is undersampled. + Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman and Rubin, 1992) should approach 1.0 as runs converge. Setting sumt conformat to Simple --- CODEML SUMMARY Model 1: NearlyNeutral -4579.698767 Model 2: PositiveSelection -4578.209913 Model 0: one-ratio -4611.932697 Model 3: discrete -4574.830921 Model 7: beta -4581.953361 Model 8: beta&w>1 -4576.16763 Model 0 vs 1 64.46786000000066 Model 2 vs 1 2.977708000000348 Model 8 vs 7 11.571461999999883 Additional information for M7 vs M8: Naive Empirical Bayes (NEB) analysis Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG7115-PD) Pr(w>1) post mean +- SE for w 128 N 0.999** 4.744 Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118) Positively selected sites (*: P>95%; **: P>99%) (amino acids refer to 1st sequence: D_melanogaster_CG7115-PD) Pr(w>1) post mean +- SE for w 6 R 0.671 1.240 +- 0.603 9 L 0.767 1.375 +- 0.617 128 N 0.989* 1.684 +- 0.721 159 M 0.646 1.204 +- 0.580 224 N 0.659 1.227 +- 0.546
>C1 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIEHGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEESLKV PAKSQPVAPAVVQRSNSIKTKoo >C2 MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGKESLKV PAKSQPVAPAVVQRSNSIKTKoo >C3 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA SGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLK EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEDSLKV PAKSQPVAPAVVQRSNSIKTKoo >C4 MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA SGNMGSAKESFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSTGRAGEESLKV PAKSQPVAPAVVQRSNSIKTKoo >C5 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA SGNMGAAKESFLNNNNNAQSGAGSAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK EPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGRAGEESLKV PAKPQPVAPAVVQRSNSIKTKoo >C6 MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA SGNVGAAKDSFLNNNNNAQNGAGSAPPPNYEARCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK EPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIGSSAGKVGDETLKI PAKSQAVAPAVVQRSNSIKTKoo >C7 MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA SGNVGAAKDSFLNNNNNAPNGAGHAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHLK ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGDETLKV PAKSQPVASAVVQRSNSIKTKoo >C8 MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGDESLK VPAKSQPVAPAVVQRSNSIKTKo >C9 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL KVPAKSQPVAPAVVQRSNSIKTK >C10 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA SGNVGAAKDSFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLITDE IMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSRG IAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPL KDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHLK ESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGEESLKV PAKSQPVAPAVVQRSNSIKTKoo CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=475 C1 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS C2 MDHRHKRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS C3 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS C4 MDDRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMELSASAGDHQS C5 MDHRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAAKLMELSASAGDHQS C6 MDRRYRRSARSSTAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS C7 MDRRYQRSLRSSSAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS C8 MDRRYKGSIRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS C9 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS C10 MDRRYRRSLRSSAAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGDHQS ** *:: * ***:**********************.*:**:********* C1 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C2 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C3 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C4 WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C5 WEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGGEFA C6 WEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C7 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C8 WEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C9 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA C10 WEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFA ***::********************:************************ C1 ADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKE C2 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDANKE C3 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDANKE C4 ADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKESNKE C5 ADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE C6 ADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKESNKE C7 ADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDSNKE C8 ADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKESNKE C9 ADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDSNKE C10 ADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKESNKE *************:**** :****:** ..************.**::*** C1 NTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA C2 NTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSAMRA C3 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA C4 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSAMRA C5 NTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRA C6 NAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSAMRA C7 NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA C8 NTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSAMRA C9 NTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA C10 NTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSAMRA *:****.: *******: .**********:******.***..******** C1 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIEHGRINFGKLITD C2 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD C3 SGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKLITD C4 SGNMGSAKESFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD C5 SGNMGAAKESFLNNNNNAQSG-AGSAPPPNYEAKCYIENGRINFGKLITD C6 SGNVGAAKDSFLNNNNNAQNG-AGSAPPPNYEARCYIENGRINFGKLITD C7 SGNVGAAKDSFLNNNNNAPNG-AGHAPPPNYEAKCYIENGRINFGKLITD C8 SGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKLITD C9 SGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKLITD C10 SGNVGAAKDSFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKLITD ***:*:**::*******. .* *. ********:****:*********** C1 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR C2 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR C3 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR C4 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR C5 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWR C6 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR C7 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR C8 EIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDFR C9 EIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDSR C10 EIMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYDSR ***:***********************:******************** * C1 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C2 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C3 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C4 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C5 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C6 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C7 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C8 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C9 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP C10 GIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYP ************************************************** C1 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL C2 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL C3 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHL C4 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL C5 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL C6 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL C7 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL C8 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQEHL C9 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQEHL C10 LKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQEHL *****************************************:***. *** C1 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEESL C2 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGKESL C3 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGEDSL C4 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSTGRAGEESL C5 KEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGRAGEESL C6 KEPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIG-SSAGKVGDETL C7 KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGDETL C8 KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGDESL C9 KESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGDESL C10 KESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGEESL **.*:*****.*********************.**:** *::*:.*.::* C1 KVPAKSQPVAPAVVQRSNSIKTKoo C2 KVPAKSQPVAPAVVQRSNSIKTKoo C3 KVPAKSQPVAPAVVQRSNSIKTKoo C4 KVPAKSQPVAPAVVQRSNSIKTKoo C5 KVPAKPQPVAPAVVQRSNSIKTKoo C6 KIPAKSQAVAPAVVQRSNSIKTKoo C7 KVPAKSQPVASAVVQRSNSIKTKoo C8 KVPAKSQPVAPAVVQRSNSIKTKo- C9 KVPAKSQPVAPAVVQRSNSIKTK-- C10 KVPAKSQPVAPAVVQRSNSIKTKoo *:***.*.**.************ PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427) -full_log S [0] -genepred_score S [0] nsd -run_name S [0] -mem_mode S [0] mem -extend D [1] 1 -extend_mode S [0] very_fast_triplet -max_n_pair D [0] 10 -seq_name_for_quadruplet S [0] all -compact S [0] default -clean S [0] no -do_self FL [0] 0 -do_normalise D [0] 1000 -template_file S [0] -setenv S [0] 0 -template_mode S [0] -flip D [0] 0 -remove_template_file D [0] 0 -profile_template_file S [0] -in S [0] -seq S [0] -aln S [0] -method_limits S [0] -method S [0] -lib S [0] -profile S [0] -profile1 S [0] -profile2 S [0] -pdb S [0] -relax_lib D [0] 1 -filter_lib D [0] 0 -shrink_lib D [0] 0 -out_lib W_F [0] no -out_lib_mode S [0] primary -lib_only D [0] 0 -outseqweight W_F [0] no -dpa FL [0] 0 -seq_source S [0] ANY -cosmetic_penalty D [0] 0 -gapopen D [0] 0 -gapext D [0] 0 -fgapopen D [0] 0 -fgapext D [0] 0 -nomatch D [0] 0 -newtree W_F [0] default -tree W_F [0] NO -usetree R_F [0] -tree_mode S [0] nj -distance_matrix_mode S [0] ktup -distance_matrix_sim_mode S [0] idmat_sim1 -quicktree FL [0] 0 -outfile W_F [0] default -maximise FL [1] 1 -output S [1] score_ascii html score_ascii -len D [0] 0 -infile R_F [1] /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -matrix S [0] default -tg_mode D [0] 1 -profile_mode S [0] cw_profile_profile -profile_comparison S [0] profile -dp_mode S [0] linked_pair_wise -ktuple D [0] 1 -ndiag D [0] 0 -diag_threshold D [0] 0 -diag_mode D [0] 0 -sim_matrix S [0] vasiliky -transform S [0] -extend_seq FL [0] 0 -outorder S [0] input -inorder S [0] aligned -seqnos S [0] off -case S [0] keep -cpu D [0] 0 -maxnseq D [0] 1000 -maxlen D [0] -1 -sample_dp D [0] 0 -weight S [0] default -seq_weight S [0] no -align FL [1] 1 -mocca FL [0] 0 -domain FL [0] 0 -start D [0] 0 -len D [0] 0 -scale D [0] 0 -mocca_interactive FL [0] 0 -method_evaluate_mode S [0] default -evaluate_mode S [1] t_coffee_fast -get_type FL [0] 0 -clean_aln D [0] 0 -clean_threshold D [1] 1 -clean_iteration D [1] 1 -clean_evaluate_mode S [0] t_coffee_fast -extend_matrix FL [0] 0 -prot_min_sim D [40] 40 -prot_max_sim D [90] 90 -prot_min_cov D [40] 40 -pdb_type S [0] d -pdb_min_sim D [35] 35 -pdb_max_sim D [100] 100 -pdb_min_cov D [50] 50 -pdb_blast_server W_F [0] EBI -blast W_F [0] -blast_server W_F [0] EBI -pdb_db W_F [0] pdb -protein_db W_F [0] uniprot -method_log W_F [0] no -struc_to_use S [0] -cache W_F [0] use -align_pdb_param_file W_F [0] no -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble -external_aligner S [0] NO -msa_mode S [0] tree -master S [0] no -blast_nseq D [0] 0 -lalign_n_top D [0] 10 -iterate D [1] 0 -trim D [0] 0 -split D [0] 0 -trimfile S [0] default -split D [0] 0 -split_nseq_thres D [0] 0 -split_score_thres D [0] 0 -check_pdb_status D [0] 0 -clean_seq_name D [0] 0 -seq_to_keep S [0] -dpa_master_aln S [0] -dpa_maxnseq D [0] 0 -dpa_min_score1 D [0] -dpa_min_score2 D [0] -dpa_keep_tmpfile FL [0] 0 -dpa_debug D [0] 0 -multi_core S [0] templates_jobs_relax_msa_evaluate -n_core D [0] 0 -max_n_proc D [0] 0 -lib_list S [0] -prune_lib_mode S [0] 5 -tip S [0] none -rna_lib S [0] -no_warning D [0] 0 -run_local_script D [0] 0 -plugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: lugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9 Length 473 type PROTEIN Struct Unchecked Multi Core Mode: 72 processors: --- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins S [0] default -proxy S [0] unset -email S [0] -clean_overaln D [0] 0 -overaln_param S [0] -overaln_mode S [0] -overaln_model S [0] -overaln_threshold D [0] 0 -overaln_target D [0] 0 -overaln_P1 D [0] 0 -overaln_P2 D [0] 0 -overaln_P3 D [0] 0 -overaln_P4 D [0] 0 -exon_boundaries S [0] -dump S [0] no -display D [0] 100 INPUT FILES Input File (S) /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Format clustal_aln Input File (M) proba_pair Identify Master Sequences [no]: Master Sequences Identified INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length 473 type PROTEIN Struct Unchecked Input File /opt/ADOPS/181/CG7115-PD/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C