--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Thu Nov 10 14:39:13 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/181/CG7115-PA/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -5175.93         -5190.37
2      -5175.45         -5190.80
--------------------------------------
TOTAL    -5175.66         -5190.61
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/181/CG7115-PA/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.899498    0.004157    0.772464    1.025492    0.899910   1228.35   1359.39    1.000
r(A<->C){all}   0.083173    0.000179    0.059053    0.110296    0.082355    899.74   1017.95    1.000
r(A<->G){all}   0.227886    0.000646    0.179643    0.278984    0.226200    815.55    941.96    1.001
r(A<->T){all}   0.087082    0.000268    0.055822    0.118547    0.086232    614.99    838.12    1.000
r(C<->G){all}   0.071747    0.000127    0.052435    0.095074    0.070923    925.84    981.73    1.000
r(C<->T){all}   0.457989    0.000958    0.400033    0.518184    0.458179    851.59    953.09    1.000
r(G<->T){all}   0.072122    0.000186    0.049040    0.101928    0.070830   1062.48   1079.09    1.000
pi(A){all}      0.255527    0.000114    0.234987    0.276220    0.255294    782.23    927.31    1.000
pi(C){all}      0.266551    0.000106    0.246657    0.287366    0.266549   1065.29   1083.10    1.000
pi(G){all}      0.275148    0.000118    0.254578    0.296201    0.275159   1038.34   1053.57    1.000
pi(T){all}      0.202774    0.000086    0.183734    0.219711    0.202901   1078.21   1111.32    1.001
alpha{1,2}      0.142695    0.000181    0.117839    0.170424    0.142163   1242.89   1304.01    1.000
alpha{3}        4.027017    0.976628    2.249385    5.918171    3.918334   1409.70   1438.49    1.000
pinvar{all}     0.389618    0.001141    0.321026    0.453228    0.390979   1372.73   1411.34    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-4844.651112
Model 2: PositiveSelection	-4842.314087
Model 0: one-ratio	-4872.136251
Model 3: discrete	-4838.935544
Model 7: beta	-4847.438568
Model 8: beta&w>1	-4839.860038


Model 0 vs 1	54.97027800000069

Model 2 vs 1	4.674049999999625

Model 8 vs 7	15.157059999999547

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PA)

            Pr(w>1)     post mean +- SE for w

   181 N      1.000**       5.389

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG7115-PA)

            Pr(w>1)     post mean +- SE for w

   181 N      0.994**       2.656 +- 2.066
   212 M      0.557         1.213 +- 0.793
   277 N      0.592         1.276 +- 0.777

>C1
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDA
NKENTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
MRASGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIEHGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
WRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALE
HLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEES
LKVPAKSQPVAPAVVQRSNSIKTKoo
>C2
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDA
NKENTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSA
MRASGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
WRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALE
HLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGKES
LKVPAKSQPVAPAVVQRSNSIKTKoo
>C3
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDA
NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
MRASGNLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
WRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALE
HLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEDS
LKVPAKSQPVAPAVVQRSNSIKTKoo
>C4
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
HQSWEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKES
NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSA
MRASGNMGSAKESFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
WRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQE
HLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSTGRAGEES
LKVPAKSQPVAPAVVQRSNSIKTKoo
>C5
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAAKLMELSASAGD
HQSWEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKES
NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
MRASGNMGAAKESFLNNNNNAQSGAGSAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
WRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQE
HLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGRAGEES
LKVPAKPQPVAPAVVQRSNSIKTKoo
>C6
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
HQSWEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKES
NKENAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSA
MRASGNVGAAKDSFLNNNNNAQNGAGSAPPPNYEARCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
SRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQE
HLKEPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIGSSAGKVGDET
LKIPAKSQAVAPAVVQRSNSIKTKoo
>C7
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDS
NKENTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
MRASGNVGAAKDSFLNNNNNAPNGAGHAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYD
SRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQE
HLKESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGDET
LKVPAKSQPVASAVVQRSNSIKTKoo
>C8
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGMILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
HQSWEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKES
NKENTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSA
MRASGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKL
ITDEIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
DFRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
EHLKESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGDE
SLKVPAKSQPVAPAVVQRSNSIKTKo
>C9
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDS
NKENTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
MRASGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKL
ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
DSRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQ
EHLKESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGD
ESLKVPAKSQPVAPAVVQRSNSIKTK
>C10
MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKES
NKENTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
MRASGNVGAAKDSFLNNNNNAQNGAGNAPPPNYEAKCYIENGRINFGKLI
TDEIMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMYD
SRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGD
YPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQE
HLKESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKVGEES
LKVPAKSQPVAPAVVQRSNSIKTKoo
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=10, Len=528 

C1              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C2              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C3              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C4              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C5              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C6              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C7              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C8              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C9              MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
C10             MDDELEDKVFYQTYVSHMKILSKFAVGFSSINSPLAYIWKLCRLYVLRPE
                **************************************************

C1              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
C2              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
C3              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
C4              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMELSASAGD
C5              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAAKLMELSASAGD
C6              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
C7              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
C8              VIFCGMILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
C9              VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
C10             VIFCGLILFVLLLYLQAVDVWSRSILGRIQATLGRQKAVKMMEMSASAGD
                *****:********************************.*:**:******

C1              HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C2              HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C3              HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C4              HQSWEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C5              HQSWEELKQQSSAFAVLGRRPRMEDRFIVEENINNNTGISFFAVFDGHGG
C6              HQSWEEMRQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C7              HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C8              HQSWEELKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C9              HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
C10             HQSWEEMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGG
                ******::********************:*********************

C1              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDA
C2              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKDA
C3              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQNRKDA
C4              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGLSGDYDKSPYLARKQSRKES
C5              EFAADFAKDVLVKNIYHKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKES
C6              EFAADFAKDVLVKNIYNKIIEMSKLLKAEGHGGDYDKSPYLARKQSRKES
C7              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGHAGDYDKSPYLARKQSRKDS
C8              EFAADFAKDVLVKNIYNKIIETTKLLKTEGVSSDYDKSPYLARKQSRKES
C9              EFAADFAKDVLVKNIYNKIIEMSKLLKTEGVSGDYDKSPYLARKQSRKDS
C10             EFAADFAKDVLVKNIYNKIIEMSKLLKTEGYSGDYDKSPYLARKQSRKES
                ****************:**** :****:** ..************.**::

C1              NKENTEPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
C2              NKENTEPTAAVMRKDSLRKAHNTTADCSAIKQKTTEASIVDIYTVQLNSA
C3              NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
C4              NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYVVQLNSA
C5              NKENTEPTAAVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSA
C6              NKENAEPTAALSRKDSLRKAHSTTADCSAIKQRTTEASIADIYTAQLNSA
C7              NKENTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
C8              NKENTEPTAAVARKDSLRKSISTTADCSAIKQKTTEASIADIYTAQLNSA
C9              NKENTEPTAAVARKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
C10             NKENTEPTAAVTRKDSLRKAHSTTADCSAIKQKTTEASIADIYTAQLNSA
                ****:****.: *******: .**********:******.***..*****

C1              MRASGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIEHGRINFGKL
C2              MRASGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKL
C3              MRASGNLGAAKDSFLNNNNNGQNG-AANAPPPNYEAKCYIENGRINFGKL
C4              MRASGNMGSAKESFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKL
C5              MRASGNMGAAKESFLNNNNNAQSG-AGSAPPPNYEAKCYIENGRINFGKL
C6              MRASGNVGAAKDSFLNNNNNAQNG-AGSAPPPNYEARCYIENGRINFGKL
C7              MRASGNVGAAKDSFLNNNNNAPNG-AGHAPPPNYEAKCYIENGRINFGKL
C8              MRASGNVGAAKDTFLNNNNNAQNGGAGNAPPPNYEAKCYIENGRINFGKL
C9              MRASGNVGAAKDSFLNNNNNAQNGGAGSAPPPNYEAKCYIENGRINFGKL
C10             MRASGNVGAAKDSFLNNNNNAQNG-AGNAPPPNYEAKCYIENGRINFGKL
                ******:*:**::*******. .* *. ********:****:********

C1              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C2              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C3              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C4              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C5              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C6              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C7              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C8              ITDEIMTADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C9              ITDEIMSADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMY
C10             ITDEIMSADYKLVEQAKRATNIAGTTALIAVVQGSKLIVANVGDSRGVMY
                ******:***********************:*******************

C1              DWRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C2              DWRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C3              DWRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C4              DWRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C5              DWRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C6              DSRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C7              DSRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C8              DFRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C9              DSRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
C10             DSRGIAIPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALG
                * ************************************************

C1              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAL
C2              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAL
C3              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAL
C4              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
C5              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
C6              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
C7              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
C8              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFVQ
C9              DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEESCTFVQ
C10             DYPLKDKNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFAQ
                ********************************************:***. 

C1              EHLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGE
C2              EHLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGK
C3              EHLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGE
C4              EHLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSTGRAGE
C5              EHLKEPDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGRAGE
C6              EHLKEPDYGAKSLVMESYKRGSVDNITVLVIVFKNGVYRIG-SSAGKVGD
C7              EHLKESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGD
C8              EHLKESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKAGD
C9              EHLKESDFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAAGKVGD
C10             EHLKESDFGAKSLVMESYKRGSVDNITVLVIVFKNDVYKIG-SSAGKVGE
                *****.*:*****.*********************.**:** *::*:.*.

C1              ESLKVPAKSQPVAPAVVQRSNSIKTKoo
C2              ESLKVPAKSQPVAPAVVQRSNSIKTKoo
C3              DSLKVPAKSQPVAPAVVQRSNSIKTKoo
C4              ESLKVPAKSQPVAPAVVQRSNSIKTKoo
C5              ESLKVPAKPQPVAPAVVQRSNSIKTKoo
C6              ETLKIPAKSQAVAPAVVQRSNSIKTKoo
C7              ETLKVPAKSQPVASAVVQRSNSIKTKoo
C8              ESLKVPAKSQPVAPAVVQRSNSIKTKo-
C9              ESLKVPAKSQPVAPAVVQRSNSIKTK--
C10             ESLKVPAKSQPVAPAVVQRSNSIKTKoo
                ::**:***.*.**.************  




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
lugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C8  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C9  Length  526 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnlugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 10 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C10 Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3  Length  526 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/181/CG7115-PA/b