--- EXPERIMENT NOTES




 --- EXPERIMENT PROPERTIES

#Wed Nov 02 17:28:21 WET 2016
codeml.models=0 1 2 3 7 8
mrbayes.mpich=
mrbayes.ngen=1000000
tcoffee.alignMethod=CLUSTALW2
tcoffee.params=
tcoffee.maxSeqs=0
codeml.bin=codeml
mrbayes.tburnin=2500
codeml.dir=
input.sequences=
mrbayes.pburnin=2500
mrbayes.bin=mb_adops
tcoffee.bin=t_coffee_ADOPS
mrbayes.dir=/usr/bin/
tcoffee.dir=
tcoffee.minScore=3
input.fasta=/opt/ADOPS/138/CG40498-PJ/input.fasta
input.names=
mrbayes.params=
codeml.params=



 --- PSRF SUMMARY

      Estimated marginal likelihoods for runs sampled in files
"/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
(Use the harmonic mean for Bayes factor comparisons of models)

(Values are saved to the file /opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.lstat)

Run   Arithmetic mean   Harmonic mean
--------------------------------------
1      -1673.57         -1687.71
2      -1673.43         -1685.56
--------------------------------------
TOTAL    -1673.50         -1687.12
--------------------------------------


Model parameter summaries over the runs sampled in files
"/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run1.p" and "/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run2.p":
Summaries are based on a total of 3002 samples from 2 runs.
Each run produced 2001 samples of which 1501 samples were included.
Parameter summaries saved to file "/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.pstat".

95% HPD Interval
--------------------
Parameter         Mean      Variance     Lower       Upper       Median    min ESS*  avg ESS    PSRF+
------------------------------------------------------------------------------------------------------
TL{all}         0.191346    0.000788    0.143251    0.250044    0.188683   1300.52   1344.40    1.000
r(A<->C){all}   0.163104    0.001937    0.086406    0.251787    0.159588    633.24    799.29    1.001
r(A<->G){all}   0.219810    0.002270    0.129506    0.311782    0.217522    982.88   1017.45    1.000
r(A<->T){all}   0.141806    0.001279    0.074502    0.211632    0.139052    580.29    757.52    1.001
r(C<->G){all}   0.079972    0.001164    0.021345    0.148659    0.075984    793.81    853.55    1.000
r(C<->T){all}   0.320578    0.003411    0.205393    0.431410    0.318027    888.86    913.43    1.000
r(G<->T){all}   0.074730    0.000795    0.023842    0.129777    0.071147    883.75    943.07    1.001
pi(A){all}      0.303960    0.000249    0.272927    0.334677    0.303690   1213.10   1253.67    1.000
pi(C){all}      0.185813    0.000174    0.160807    0.212727    0.185845    685.80    919.49    1.000
pi(G){all}      0.230645    0.000209    0.201962    0.258025    0.230731    855.33   1120.77    1.000
pi(T){all}      0.279582    0.000241    0.247232    0.307519    0.279526    906.74   1013.28    1.000
alpha{1,2}      0.079425    0.004939    0.000105    0.206737    0.063968   1034.96   1203.04    1.000
alpha{3}        1.674524    0.581301    0.420699    3.173134    1.532646   1370.65   1435.82    1.000
pinvar{all}     0.315130    0.018877    0.045477    0.560902    0.325572    964.18   1125.22    1.000
------------------------------------------------------------------------------------------------------
* Convergence diagnostic (ESS = Estimated Sample Size); min and avg values
correspond to minimal and average ESS among runs.
ESS value below 100 may indicate that the parameter is undersampled.
+ Convergence diagnostic (PSRF = Potential Scale Reduction Factor; Gelman
and Rubin, 1992) should approach 1.0 as runs converge.


Setting sumt conformat to Simple



 --- CODEML SUMMARY

Model 1: NearlyNeutral	-1612.34319
Model 2: PositiveSelection	-1609.229767
Model 0: one-ratio	-1619.591069
Model 3: discrete	-1609.229767
Model 7: beta	-1613.242351
Model 8: beta&w>1	-1609.254657


Model 0 vs 1	14.495758000000023

Model 2 vs 1	6.226846000000023

Additional information for M1 vs M2:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG40498-PJ)

            Pr(w>1)     post mean +- SE for w

    63 T      0.879         4.631
   212 S      1.000**       5.254
   252 L      0.889         4.681
   259 L      0.878         4.624

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG40498-PJ)

            Pr(w>1)     post mean +- SE for w

    63 T      0.759         3.433 +- 2.310
   212 S      0.947         4.067 +- 2.183
   252 L      0.770         3.496 +- 2.328
   259 L      0.742         3.318 +- 2.253


Model 8 vs 7	7.975388000000294

Additional information for M7 vs M8:
Naive Empirical Bayes (NEB) analysis
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG40498-PJ)

            Pr(w>1)     post mean +- SE for w

    63 T      0.870         4.605
   212 S      1.000**       5.278
   252 L      0.880         4.658
   259 L      0.867         4.593

Bayes Empirical Bayes (BEB) analysis (Yang, Wong & Nielsen 2005. Mol. Biol. Evol. 22:1107-1118)
Positively selected sites (*: P>95%; **: P>99%)
(amino acids refer to 1st sequence: D_melanogaster_CG40498-PJ)

            Pr(w>1)     post mean +- SE for w

    63 T      0.831         2.904 +- 1.917
   212 S      0.980*        3.277 +- 1.766
   252 L      0.835         2.926 +- 1.925
   259 L      0.835         2.887 +- 1.882

>C1
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRNAVSSGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMSNGTIVSHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KLLLRRESLNDAISITRI
>C2
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C3
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRREFLSDAISITRI
>C4
MHSVSIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C5
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLVLNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNAYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C6
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSLRR
KYHHPRHPVSPGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDIETGVLTTRHARKAVALQKGGRNISPTDVSVVNCG
SAENMCNGPIVNHNVLNSTDAILEKIVEEDTTYLNDRNSGISPIELENDK
KQLLRRESTNDAINITRI
>C7
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSPGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCS
SAENMCNGPIVGHNVLNSSDAFLEKIVEEDTTYLNDRSSGISPIDLENDK
KLLLRRESINDAINITRI
CLUSTAL FORMAT for T-COFFEE Version_10.00.r1613 [http://www.tcoffee.org] [MODE:  ], CPU=0.00 sec, SCORE=100, Nseq=7, Len=268 

C1              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
C2              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
C3              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
C4              MHSVSIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
C5              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
C6              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSLRR
C7              MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
                ****.******************************************:**

C1              KYHHPRNAVSSGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C2              KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C3              KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C4              KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C5              KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C6              KYHHPRHPVSPGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
C7              KYHHPRHAVSPGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
                ******:.**.*.*************************************

C1              MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
C2              MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
C3              MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
C4              MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
C5              MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLVLNCLISRKEEEDLEDYVQ
C6              MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
C7              MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
                ***::**************************:******************

C1              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
C2              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
C3              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
C4              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
C5              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
C6              RQLTRSRSGHRLERDIETGVLTTRHARKAVALQKGGRNISPTDVSVVNCG
C7              RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCS
                ***************:*********************  **********.

C1              SSENMSNGTIVSHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
C2              SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
C3              SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
C4              SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
C5              SSENMCNGPIVVHNVLNSSDAILEKIVEEDNAYLNDRSSGISPIDLENDK
C6              SAENMCNGPIVNHNVLNSTDAILEKIVEEDTTYLNDRNSGISPIELENDK
C7              SAENMCNGPIVGHNVLNSSDAFLEKIVEEDTTYLNDRSSGISPIDLENDK
                *:***.**.** ******:**:********.:*****.******:*****

C1              KLLLRRESLNDAISITRI
C2              KQLLRRESLSDAISITRI
C3              KQLLRREFLSDAISITRI
C4              KQLLRRESLSDAISITRI
C5              KQLLRRESLSDAISITRI
C6              KQLLRRESTNDAINITRI
C7              KLLLRRESINDAINITRI
                * *****  .***.****




PROGRAM: T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
-full_log      	S	[0] 
-genepred_score	S	[0] 	nsd
-run_name      	S	[0] 
-mem_mode      	S	[0] 	mem
-extend        	D	[1] 	1 
-extend_mode   	S	[0] 	very_fast_triplet
-max_n_pair    	D	[0] 	10 
-seq_name_for_quadruplet	S	[0] 	all
-compact       	S	[0] 	default
-clean         	S	[0] 	no
-do_self       	FL	[0] 	0
-do_normalise  	D	[0] 	1000 
-template_file 	S	[0] 
-setenv        	S	[0] 	0
-template_mode 	S	[0] 
-flip          	D	[0] 	0 
-remove_template_file	D	[0] 	0 
-profile_template_file	S	[0] 
-in            	S	[0] 
-seq           	S	[0] 
-aln           	S	[0] 
-method_limits 	S	[0] 
-method        	S	[0] 
-lib           	S	[0] 
-profile       	S	[0] 
-profile1      	S	[0] 
-profile2      	S	[0] 
-pdb           	S	[0] 
-relax_lib     	D	[0] 	1 
-filter_lib    	D	[0] 	0 
-shrink_lib    	D	[0] 	0 
-out_lib       	W_F	[0] 	no
-out_lib_mode  	S	[0] 	primary
-lib_only      	D	[0] 	0 
-outseqweight  	W_F	[0] 	no
-dpa           	FL	[0] 	0
-seq_source    	S	[0] 	ANY
-cosmetic_penalty	D	[0] 	0 
-gapopen       	D	[0] 	0 
-gapext        	D	[0] 	0 
-fgapopen      	D	[0] 	0 
-fgapext       	D	[0] 	0 
-nomatch       	D	[0] 	0 
-newtree       	W_F	[0] 	default
-tree          	W_F	[0] 	NO
-usetree       	R_F	[0] 
-tree_mode     	S	[0] 	nj
-distance_matrix_mode	S	[0] 	ktup
-distance_matrix_sim_mode	S	[0] 	idmat_sim1
-quicktree     	FL	[0] 	0
-outfile       	W_F	[0] 	default
-maximise      	FL	[1] 	1
-output        	S	[1] 	score_ascii	html	score_ascii
-len           	D	[0] 	0 
-infile        	R_F	[1] 	/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
-matrix        	S	[0] 	default
-tg_mode       	D	[0] 	1 
-profile_mode  	S	[0] 	cw_profile_profile
-profile_comparison	S	[0] 	profile
-dp_mode       	S	[0] 	linked_pair_wise
-ktuple        	D	[0] 	1 
-ndiag         	D	[0] 	0 
-diag_threshold	D	[0] 	0 
-diag_mode     	D	[0] 	0 
-sim_matrix    	S	[0] 	vasiliky
-transform     	S	[0] 
-extend_seq    	FL	[0] 	0
-outorder      	S	[0] 	input
-inorder       	S	[0] 	aligned
-seqnos        	S	[0] 	off
-case          	S	[0] 	keep
-cpu           	D	[0] 	0 
-maxnseq       	D	[0] 	1000 
-maxlen        	D	[0] 	-1 
-sample_dp     	D	[0] 	0 
-weight        	S	[0] 	default
-seq_weight    	S	[0] 	no
-align         	FL	[1] 	1
-mocca         	FL	[0] 	0
-domain        	FL	[0] 	0
-start         	D	[0] 	0 
-len           	D	[0] 	0 
-scale         	D	[0] 	0 
-mocca_interactive	FL	[0] 	0
-method_evaluate_mode	S	[0] 	default
-evaluate_mode 	S	[1] 	t_coffee_fast
-get_type      	FL	[0] 	0
-clean_aln     	D	[0] 	0 
-clean_threshold	D	[1] 	1 
-clean_iteration	D	[1] 	1 
-clean_evaluate_mode	S	[0] 	t_coffee_fast
-extend_matrix 	FL	[0] 	0
-prot_min_sim  	D	[40] 	40 
-prot_max_sim  	D	[90] 	90 
-prot_min_cov  	D	[40] 	40 
-pdb_type      	S	[0] 	d
-pdb_min_sim   	D	[35] 	35 
-pdb_max_sim   	D	[100] 	100 
-pdb_min_cov   	D	[50] 	50 
-pdb_blast_server	W_F	[0] 	EBI
-blast         	W_F	[0] 
-blast_server  	W_F	[0] 	EBI
-pdb_db        	W_F	[0] 	pdb
-protein_db    	W_F	[0] 	uniprot
-method_log    	W_F	[0] 	no
-struc_to_use  	S	[0] 
-cache         	W_F	[0] 	use
-align_pdb_param_file	W_F	[0] 	no
-align_pdb_hasch_mode	W_F	[0] 	hasch_ca_trace_bubble
-external_aligner	S	[0] 	NO
-msa_mode      	S	[0] 	tree
-master        	S	[0] 	no
-blast_nseq    	D	[0] 	0 
-lalign_n_top  	D	[0] 	10 
-iterate       	D	[1] 	0 
-trim          	D	[0] 	0 
-split         	D	[0] 	0 
-trimfile      	S	[0] 	default
-split         	D	[0] 	0 
-split_nseq_thres	D	[0] 	0 
-split_score_thres	D	[0] 	0 
-check_pdb_status	D	[0] 	0 
-clean_seq_name	D	[0] 	0 
-seq_to_keep   	S	[0] 
-dpa_master_aln	S	[0] 
-dpa_maxnseq   	D	[0] 	0 
-dpa_min_score1	D	[0] 
-dpa_min_score2	D	[0] 
-dpa_keep_tmpfile	FL	[0] 	0
-dpa_debug     	D	[0] 	0 
-multi_core    	S	[0] 	templates_jobs_relax_msa_evaluate
-n_core        	D	[0] 	0 
-max_n_proc    	D	[0] 	0 
-lib_list      	S	[0] 
-prune_lib_mode	S	[0] 	5
-tip           	S	[0] 	none
-rna_lib       	S	[0] 
-no_warning    	D	[0] 	0 
-run_local_script	D	[0] 	0 
-plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:
plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.alnplugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 plugins       	S	[0] 	default
-proxy         	S	[0] 	unset
-email         	S	[0] 
-clean_overaln 	D	[0] 	0 
-overaln_param 	S	[0] 
-overaln_mode  	S	[0] 
-overaln_model 	S	[0] 
-overaln_threshold	D	[0] 	0 
-overaln_target	D	[0] 	0 
-overaln_P1    	D	[0] 	0 
-overaln_P2    	D	[0] 	0 
-overaln_P3    	D	[0] 	0 
-overaln_P4    	D	[0] 	0 
-exon_boundaries	S	[0] 
-dump          	S	[0] 	no
-display       	D	[0] 	100 

INPUT FILES
	Input File (S) /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln  Format clustal_aln
	Input File (M) proba_pair 

Identify Master Sequences [no]:

Master Sequences Identified
INPUT SEQUENCES: 7 SEQUENCES  [PROTEIN]
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C1 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C2 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C3 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C4 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C5 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C6 Length  268 type PROTEIN Struct Unchecked
  Input File /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln Seq C7 Length  268 type PROTEIN Struct Unchecked

	Multi Core Mode: 72 processors:

	--- Process Method/Library/Aln S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	--- Process Method/Library/Aln Mproba_pair
	xxx Retrieved S/opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln
	xxx Retrieved Mproba_pair

	All Methods Retrieved

MANUAL PENALTIES: gapopen=0 gapext=0

	Library Total Size: [11256]

Library Relaxation: Multi_proc [72]
 
Relaxation Summary: [11256]--->[11256]



UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1


OUTPUT RESULTS
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii
	#### File Type= MSA             Format= html            Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.html
	#### File Type= MSA             Format= score_ascii     Name= input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.score_ascii

# Command Line: t_coffee_ADOPS -infile /opt/ADOPS/138/CG40498-PJ/batch/allfiles/tcoffee/input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln -output score_ascii -special_mode evaluate -evaluate_mode t_coffee_fast  [PROGRAM:T-COFFEE]
# T-COFFEE Memory Usage: Current= 29.390 Mb, Max= 30.781 Mb
# Results Produced with T-COFFEE Version_10.00.r1613 (2013-10-22 15:49:04 - Revision 1613 - Build 427)
# T-COFFEE is available from http://www.tcoffee.org
# Register on: https://groups.google.com/group/tcoffee/
>C1
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRNAVSSGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMSNGTIVSHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KLLLRRESLNDAISITRI
>C2
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C3
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRREFLSDAISITRI
>C4
MHSVSIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C5
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLVLNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNAYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C6
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSLRR
KYHHPRHPVSPGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDIETGVLTTRHARKAVALQKGGRNISPTDVSVVNCG
SAENMCNGPIVNHNVLNSTDAILEKIVEEDTTYLNDRNSGISPIELENDK
KQLLRRESTNDAINITRI
>C7
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSPGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCS
SAENMCNGPIVGHNVLNSSDAFLEKIVEEDTTYLNDRSSGISPIDLENDK
KLLLRRESINDAINITRI

FORMAT of file /tmp/tmp6541711160963002138aln Not Supported[FATAL:T-COFFEE]
>C1
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRNAVSSGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMSNGTIVSHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KLLLRRESLNDAISITRI
>C2
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C3
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRREFLSDAISITRI
>C4
MHSVSIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C5
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLVLNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNAYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C6
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSLRR
KYHHPRHPVSPGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDIETGVLTTRHARKAVALQKGGRNISPTDVSVVNCG
SAENMCNGPIVNHNVLNSTDAILEKIVEEDTTYLNDRNSGISPIELENDK
KQLLRRESTNDAINITRI
>C7
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSPGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCS
SAENMCNGPIVGHNVLNSSDAFLEKIVEEDTTYLNDRSSGISPIDLENDK
KLLLRRESINDAINITRI
input.fasta.prot.fasta.clustalw2_rs_0_0.fasta.aln I:268 S:100 BS:268
# TC_SIMILARITY_MATRIX_FORMAT_01
# SEQ_INDEX C1 0
# SEQ_INDEX C2 1
# SEQ_INDEX C3 2
# SEQ_INDEX C4 3
# SEQ_INDEX C5 4
# SEQ_INDEX C6 5
# SEQ_INDEX C7 6
# PW_SEQ_DISTANCES 
BOT	    0    1	 96.27 C1	 C2	 96.27
TOP	    1    0	 96.27 C2	 C1	 96.27
BOT	    0    2	 95.90 C1	 C3	 95.90
TOP	    2    0	 95.90 C3	 C1	 95.90
BOT	    0    3	 95.90 C1	 C4	 95.90
TOP	    3    0	 95.90 C4	 C1	 95.90
BOT	    0    4	 95.90 C1	 C5	 95.90
TOP	    4    0	 95.90 C5	 C1	 95.90
BOT	    0    5	 93.28 C1	 C6	 93.28
TOP	    5    0	 93.28 C6	 C1	 93.28
BOT	    0    6	 95.90 C1	 C7	 95.90
TOP	    6    0	 95.90 C7	 C1	 95.90
BOT	    1    2	 99.63 C2	 C3	 99.63
TOP	    2    1	 99.63 C3	 C2	 99.63
BOT	    1    3	 99.63 C2	 C4	 99.63
TOP	    3    1	 99.63 C4	 C2	 99.63
BOT	    1    4	 98.88 C2	 C5	 98.88
TOP	    4    1	 98.88 C5	 C2	 98.88
BOT	    1    5	 93.66 C2	 C6	 93.66
TOP	    5    1	 93.66 C6	 C2	 93.66
BOT	    1    6	 94.78 C2	 C7	 94.78
TOP	    6    1	 94.78 C7	 C2	 94.78
BOT	    2    3	 99.25 C3	 C4	 99.25
TOP	    3    2	 99.25 C4	 C3	 99.25
BOT	    2    4	 98.51 C3	 C5	 98.51
TOP	    4    2	 98.51 C5	 C3	 98.51
BOT	    2    5	 93.28 C3	 C6	 93.28
TOP	    5    2	 93.28 C6	 C3	 93.28
BOT	    2    6	 94.40 C3	 C7	 94.40
TOP	    6    2	 94.40 C7	 C3	 94.40
BOT	    3    4	 98.51 C4	 C5	 98.51
TOP	    4    3	 98.51 C5	 C4	 98.51
BOT	    3    5	 93.28 C4	 C6	 93.28
TOP	    5    3	 93.28 C6	 C4	 93.28
BOT	    3    6	 94.40 C4	 C7	 94.40
TOP	    6    3	 94.40 C7	 C4	 94.40
BOT	    4    5	 93.28 C5	 C6	 93.28
TOP	    5    4	 93.28 C6	 C5	 93.28
BOT	    4    6	 94.40 C5	 C7	 94.40
TOP	    6    4	 94.40 C7	 C5	 94.40
BOT	    5    6	 95.15 C6	 C7	 95.15
TOP	    6    5	 95.15 C7	 C6	 95.15
AVG	 0	 C1	  *	 95.52
AVG	 1	 C2	  *	 97.14
AVG	 2	 C3	  *	 96.83
AVG	 3	 C4	  *	 96.83
AVG	 4	 C5	  *	 96.58
AVG	 5	 C6	  *	 93.66
AVG	 6	 C7	  *	 94.84
TOT	 TOT	  *	 95.91
CLUSTAL W (1.83) multiple sequence alignment

C1              ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
C2              ATGCATTCAGTTGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
C3              ATGCATTCAGTTGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
C4              ATGCATTCAGTTAGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
C5              ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
C6              ATGCATTCCGTGGGCATTCATTCGGCAATGGCGATCAAAAGGCAACGGAA
C7              ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
                ********.** .********** **************************

C1              ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGCTATAGCACGCAAA
C2              ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
C3              ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
C4              ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
C5              ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
C6              ACGTCGAGATGAACAGAAAAGGGCTCGAGAAAGACGTTATAGCACGCAAA
C7              ACGTCGTGATGAACAAAAAAGGGCTCGGGAAAGACGCTATAGCACGCAAA
                ******:********.******** **.******** *************

C1              GTTCTGAGAGCGGCGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
C2              GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
C3              GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
C4              GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
C5              GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
C6              GTTCTGAGAGCGGAGAAACATTTCATTCTCCAACAGGATCCCTGAGACGA
C7              GTTCTGAGAGCGGCGAAACATTTCATTCTCCAACAGGATCTGTGAGACGA
                *******.***** **************************  ****.***

C1              AAATACCACCATCCTCGTAATGCAGTTAGTTCTGGCACCGGAATGCTTGA
C2              AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
C3              AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
C4              AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
C5              AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
C6              AAATATCACCATCCTCGTCATCCAGTTAGTCCCGGCCCCGGAATGCTTGA
C7              AAATATCACCACCCTCGGCATGCAGTTAGTCCCGGCACCGGAATGCTTGA
                ***** ***** ***** .** ******** * ***.* ***********

C1              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C2              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C3              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C4              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C5              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C6              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
C7              CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
                **************************************************

C1              TTGTGTTTGGAGTTTTTCTTTGCGGTGCTGGTATTATTCCAGACGAAACT
C2              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
C3              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
C4              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
C5              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
C6              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
C7              TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
                ************************* ************************

C1              ATGTCATGGAACGTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTTAC
C2              ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
C3              ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
C4              ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
C5              ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
C6              ATGTCATGGAACGTATTTAGCTCAAGCTCTGCCTGGTGGAATGAAGTTAC
C7              ATGTCATGGAACGTATTTAGCTCAAGCTCAGCATGGTGGAATGAAGTTAC
                ***********  ****************:**.**************:**

C1              TTGCACAGGTTTATTTTCTCTGGGATTGGGACTGTTTTTACTAATTTTAA
C2              TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
C3              TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
C4              TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
C5              TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAGTTTTAA
C6              ATGCACAGGCTTATTTTCTCTTGGACTGGGACTGTTTTTACTTATTTTAA
C7              TTGCACAGGATTATTTTCCCTTGGACTGGGACTGTTTTTACTAATTTTAA
                :******** ******** ** *** ****************:.******

C1              ACTGTCTTATAAGCCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C2              ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C3              ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C4              ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C5              ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C6              ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
C7              ACTGTCTTATAAGTCGAAAGGAGGAGGAGGATCTTGAAGACTATGTACAA
                ************* *****.**************************.***

C1              CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
C2              CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
C3              CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
C4              CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
C5              CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
C6              CGTCAACTAACTAGATCTCGATCTGGACACCGACTTGAAAGAGATATTGA
C7              CGTCAACTAACTCGATCTCGATCTGGACACCGACTTGAAAGAGATGTTGA
                ************.*******.************************.****

C1              AACTGGTGTTTTGACAACGCGCCATGCTCGCAAAGCTGTTGCCTTACAAA
C2              AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
C3              AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
C4              AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
C5              AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
C6              AACTGGTGTTTTGACAACGCGACATGCTCGAAAAGCTGTTGCTTTACAAA
C7              AACTGGTGTTTTGACAACGCGCCATGCTCGAAAAGCGGTTGCTTTACAAA
                *********************.*****:**.***** ***** *******

C1              AGGGCGGACGTAATAACTCTCCTACAGATGTTTCCGTTGTAAATTGCGGC
C2              AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
C3              AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
C4              AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
C5              AGGGCGGACGTAATAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
C6              AGGGCGGACGTAATATATCTCCTACAGATGTTTCCGTCGTAAATTGTGGC
C7              AGGGTGGACGTAATAACTCTCCTACAGATGTTTCCGTCGTAAATTGCAGT
                **** *******:**:.******************** ******** .* 

C1              TCTTCAGAGAATATGAGCAATGGAACGATAGTCAGCCATAATGTTTTAAA
C2              TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
C3              TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
C4              TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
C5              TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
C6              TCTGCAGAAAATATGTGCAATGGACCGATAGTTAACCATAATGTTTTAAA
C7              TCTGCTGAAAATATGTGCAATGGACCGATAGTTGGCCATAATGTCTTAAA
                *** *:**.******:********.******* . ********* *****

C1              CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
C2              CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
C3              CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
C4              CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
C5              CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATGCTTATT
C6              CAGCACTGATGCAATCCTCGAAAAAATTGTGGAGGAAGATACAACTTATT
C7              CAGCTCTGATGCTTTCCTCGAAAAAATTGTGGAGGAAGATACTACTTATT
                *** :*******::**** *****************.****.:.******

C1              TAAACGACCGCAGCTCCGGAATATCTCCAATTGATTTAGAAAATGATAAG
C2              TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
C3              TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
C4              TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
C5              TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
C6              TAAACGACCGTAACTCTGGAATATCTCCGATTGAATTAGAAAATGATAAG
C7              TAAACGACCGTAGCTCTGGAATATCTCCGATTGATTTAGAAAATGATAAG
                ********** *.*** ***********.*****:***************

C1              AAACTGCTTTTAAGAAGAGAATCTCTAAATGACGCAATCAGTATAACACG
C2              AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
C3              AAACAGCTCTTAAGAAGAGAATTTCTAAGTGACGCAATCAGTATAACGCG
C4              AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
C5              AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
C6              AAGCAATTATTAAGAAGAGAATCTACGAATGACGCAATCAATATTACACG
C7              AAGCTGTTATTAAGAAGAGAATCTATAAATGACGCAATCAATATAACACG
                **.*:. * ************* *. .*.***********.***:**.**

C1              TATT
C2              TATT
C3              TATT
C4              TATT
C5              TATT
C6              TATT
C7              TATT
                ****



>C1
ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGCTATAGCACGCAAA
GTTCTGAGAGCGGCGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
AAATACCACCATCCTCGTAATGCAGTTAGTTCTGGCACCGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGTGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAACGTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTTAC
TTGCACAGGTTTATTTTCTCTGGGATTGGGACTGTTTTTACTAATTTTAA
ACTGTCTTATAAGCCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCTCGCAAAGCTGTTGCCTTACAAA
AGGGCGGACGTAATAACTCTCCTACAGATGTTTCCGTTGTAAATTGCGGC
TCTTCAGAGAATATGAGCAATGGAACGATAGTCAGCCATAATGTTTTAAA
CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
TAAACGACCGCAGCTCCGGAATATCTCCAATTGATTTAGAAAATGATAAG
AAACTGCTTTTAAGAAGAGAATCTCTAAATGACGCAATCAGTATAACACG
TATT
>C2
ATGCATTCAGTTGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
TATT
>C3
ATGCATTCAGTTGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
AAACAGCTCTTAAGAAGAGAATTTCTAAGTGACGCAATCAGTATAACGCG
TATT
>C4
ATGCATTCAGTTAGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAATTTTAA
ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
AGGGCGGACGTATTAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATACTTATT
TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
TATT
>C5
ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAAAAAAGGGCGCGAGAAAGACGTTATAGCACGCAAA
GTTCTGAAAGCGGGGAAACATTTCATTCTCCAACAGGATCCGTGAGGCGA
AAATATCACCATCCTCGTCATGCAGTTAGTTCTGGCCCGGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAAGTTATTTAGCTCAAGCTCAGCCTGGTGGAATGAAGTAAC
TTGCACAGGATTATTTTCTCTTGGATTGGGACTGTTTTTACTAGTTTTAA
ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTCGATCTCGCTCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCACGCAAAGCTGTTGCCTTACAAA
AGGGCGGACGTAATAACTCTCCTACAGATGTTTCCGTCGTAAATTGCGGC
TCTTCAGAGAATATGTGCAATGGACCGATAGTCGTCCATAATGTTTTAAA
CAGTTCTGATGCTATCCTTGAAAAAATTGTGGAGGAGGATAATGCTTATT
TAAACGACCGCAGCTCCGGAATATCTCCGATTGATTTAGAAAATGATAAG
AAACAGCTCTTAAGAAGAGAATCTCTAAGTGACGCAATCAGTATAACGCG
TATT
>C6
ATGCATTCCGTGGGCATTCATTCGGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGAGATGAACAGAAAAGGGCTCGAGAAAGACGTTATAGCACGCAAA
GTTCTGAGAGCGGAGAAACATTTCATTCTCCAACAGGATCCCTGAGACGA
AAATATCACCATCCTCGTCATCCAGTTAGTCCCGGCCCCGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAACGTATTTAGCTCAAGCTCTGCCTGGTGGAATGAAGTTAC
ATGCACAGGCTTATTTTCTCTTGGACTGGGACTGTTTTTACTTATTTTAA
ACTGTCTTATAAGTCGAAAAGAGGAGGAGGATCTTGAAGACTATGTGCAA
CGTCAACTAACTAGATCTCGATCTGGACACCGACTTGAAAGAGATATTGA
AACTGGTGTTTTGACAACGCGACATGCTCGAAAAGCTGTTGCTTTACAAA
AGGGCGGACGTAATATATCTCCTACAGATGTTTCCGTCGTAAATTGTGGC
TCTGCAGAAAATATGTGCAATGGACCGATAGTTAACCATAATGTTTTAAA
CAGCACTGATGCAATCCTCGAAAAAATTGTGGAGGAAGATACAACTTATT
TAAACGACCGTAACTCTGGAATATCTCCGATTGAATTAGAAAATGATAAG
AAGCAATTATTAAGAAGAGAATCTACGAATGACGCAATCAATATTACACG
TATT
>C7
ATGCATTCAGTGGGCATTCATTCCGCAATGGCGATCAAAAGGCAACGGAA
ACGTCGTGATGAACAAAAAAGGGCTCGGGAAAGACGCTATAGCACGCAAA
GTTCTGAGAGCGGCGAAACATTTCATTCTCCAACAGGATCTGTGAGACGA
AAATATCACCACCCTCGGCATGCAGTTAGTCCCGGCACCGGAATGCTTGA
CAGCCAGGTAGTTACTAGTATTGGCATGTTGCATATAGGTATTGTATTCG
TTGTGTTTGGAGTTTTTCTTTGCGGCGCTGGTATTATTCCAGACGAAACT
ATGTCATGGAACGTATTTAGCTCAAGCTCAGCATGGTGGAATGAAGTTAC
TTGCACAGGATTATTTTCCCTTGGACTGGGACTGTTTTTACTAATTTTAA
ACTGTCTTATAAGTCGAAAGGAGGAGGAGGATCTTGAAGACTATGTACAA
CGTCAACTAACTCGATCTCGATCTGGACACCGACTTGAAAGAGATGTTGA
AACTGGTGTTTTGACAACGCGCCATGCTCGAAAAGCGGTTGCTTTACAAA
AGGGTGGACGTAATAACTCTCCTACAGATGTTTCCGTCGTAAATTGCAGT
TCTGCTGAAAATATGTGCAATGGACCGATAGTTGGCCATAATGTCTTAAA
CAGCTCTGATGCTTTCCTCGAAAAAATTGTGGAGGAAGATACTACTTATT
TAAACGACCGTAGCTCTGGAATATCTCCGATTGATTTAGAAAATGATAAG
AAGCTGTTATTAAGAAGAGAATCTATAAATGACGCAATCAATATAACACG
TATT
>C1
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRNAVSSGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMSNGTIVSHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KLLLRRESLNDAISITRI
>C2
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C3
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRREFLSDAISITRI
>C4
MHSVSIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRINSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNTYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C5
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSSGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWKLFSSSSAWWNEVTCTGLFSLGLGLFLLVLNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCG
SSENMCNGPIVVHNVLNSSDAILEKIVEEDNAYLNDRSSGISPIDLENDK
KQLLRRESLSDAISITRI
>C6
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSLRR
KYHHPRHPVSPGPGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDIETGVLTTRHARKAVALQKGGRNISPTDVSVVNCG
SAENMCNGPIVNHNVLNSTDAILEKIVEEDTTYLNDRNSGISPIELENDK
KQLLRRESTNDAINITRI
>C7
MHSVGIHSAMAIKRQRKRRDEQKRARERRYSTQSSESGETFHSPTGSVRR
KYHHPRHAVSPGTGMLDSQVVTSIGMLHIGIVFVVFGVFLCGAGIIPDET
MSWNVFSSSSAWWNEVTCTGLFSLGLGLFLLILNCLISRKEEEDLEDYVQ
RQLTRSRSGHRLERDVETGVLTTRHARKAVALQKGGRNNSPTDVSVVNCS
SAENMCNGPIVGHNVLNSSDAFLEKIVEEDTTYLNDRSSGISPIDLENDK
KLLLRRESINDAINITRI


                            MrBayes v3.2.2 x64

                      (Bayesian Analysis of Phylogeny)

              Distributed under the GNU General Public License


               Type "help" or "help <command>" for information
                     on the commands that are available.

                   Type "about" for authorship and general
                       information about the program.



   Executing file "/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb"
   UNIX line termination
   Longest line length = 63
   Parsing file
   Expecting NEXUS formatted file
   Reading data block
      Allocated taxon set
      Allocated matrix
      Defining new matrix with 7 taxa and 804 characters
      Missing data coded as ?
      Data matrix is interleaved
      Data is Dna
      Gaps coded as -
      Matching characters coded as .
      Taxon 1 -> C1
      Taxon 2 -> C2
      Taxon 3 -> C3
      Taxon 4 -> C4
      Taxon 5 -> C5
      Taxon 6 -> C6
      Taxon 7 -> C7
      Successfully read matrix
      Setting default partition (does not divide up characters)
      Setting model defaults
      Seed (for generating default start values) = 1478107337
      Setting output file names to "/opt/ADOPS/138/CG40498-PJ/batch/allfiles/mrbayes/input.fasta.fasta.mrb.run<i>.<p|t>"
   Exiting data block
   Reading mrbayes block
      Setting autoclose to yes
      Setting nowarnings to yes
      Defining charset called first_pos
      Defining charset called second_pos
      Defining charset called third_pos
      Defining partition called by_codon
      Setting by_codon as the partition, dividing characters into 3 parts.
      Setting model defaults
      Seed (for generating default start values) = 1516354804
      Setting Nst to 6 for partition 1
      Setting Nst to 6 for partition 2
      Setting Nst to 6 for partition 3
      Setting Rates to Invgamma for partition 1
      Setting Rates to Invgamma for partition 2
      Setting Rates to Invgamma for partition 3
      Successfully set likelihood model parameters to all
         applicable data partitions 
      Unlinking
      Setting number of generations to 1000000
      Running Markov chain
      MCMC stamp = 2761583843
      Seed = 1650070370
      Swapseed = 1478107337
      Model settings:

         Settings for partition 1 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 2 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

         Settings for partition 3 --
            Datatype  = DNA
            Nucmodel  = 4by4
            Nst       = 6
                        Substitution rates, expressed as proportions
                        of the rate sum, have a Dirichlet prior
                        (1.00,1.00,1.00,1.00,1.00,1.00)
            Covarion  = No
            # States  = 4
                        State frequencies have a Dirichlet prior
                        (1.00,1.00,1.00,1.00)
            Rates     = Invgamma
                        Gamma shape parameter is exponentially
                        distributed with parameter (2.00).
                        Proportion of invariable sites is uniformly dist-
                        ributed on the interval (0.00,1.00).
                        Gamma distribution is approximated using 4 categories.
                        Likelihood summarized over all rate categories in each generation.

      Active parameters: 

                          Partition(s)
         Parameters       1  2  3
         ------------------------
         Revmat           1  1  1
         Statefreq        2  2  2
         Shape            3  3  4
         Pinvar           5  5  5
         Ratemultiplier   6  6  6
         Topology         7  7  7
         Brlens           8  8  8
         ------------------------

         Parameters can be linked or unlinked across partitions using 'link' and 'unlink'

         1 --  Parameter  = Revmat{all}
               Type       = Rates of reversible rate matrix
               Prior      = Dirichlet(1.00,1.00,1.00,1.00,1.00,1.00)
               Partitions = All

         2 --  Parameter  = Pi{all}
               Type       = Stationary state frequencies
               Prior      = Dirichlet
               Partitions = All

         3 --  Parameter  = Alpha{1,2}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partitions = 1 and 2

         4 --  Parameter  = Alpha{3}
               Type       = Shape of scaled gamma distribution of site rates
               Prior      = Exponential(2.00)
               Partition  = 3

         5 --  Parameter  = Pinvar{all}
               Type       = Proportion of invariable sites
               Prior      = Uniform(0.00,1.00)
               Partitions = All

         6 --  Parameter  = Ratemultiplier{all}
               Type       = Partition-specific rate multiplier
               Prior      = Fixed(1.0)
               Partitions = All

         7 --  Parameter  = Tau{all}
               Type       = Topology
               Prior      = All topologies equally probable a priori
               Partitions = All
               Subparam.  = V{all}

         8 --  Parameter  = V{all}
               Type       = Branch lengths
               Prior      = Unconstrained:Exponential(10.0)
               Partitions = All



      The MCMC sampler will use the following moves:
         With prob.  Chain will use move
            1.06 %   Dirichlet(Revmat{all})
            1.06 %   Slider(Revmat{all})
            1.06 %   Dirichlet(Pi{all})
            1.06 %   Slider(Pi{all})
            2.13 %   Multiplier(Alpha{1,2})
            2.13 %   Multiplier(Alpha{3})
            2.13 %   Slider(Pinvar{all})
           10.64 %   ExtSPR(Tau{all},V{all})
           10.64 %   ExtTBR(Tau{all},V{all})
           10.64 %   NNI(Tau{all},V{all})
           10.64 %   ParsSPR(Tau{all},V{all})
           31.91 %   Multiplier(V{all})
           10.64 %   Nodeslider(V{all})
            4.26 %   TLMultiplier(V{all})

      Division 1 has 21 unique site patterns
      Division 2 has 14 unique site patterns
      Division 3 has 38 unique site patterns
      Initializing conditional likelihoods
      Using standard SSE likelihood calculator for division 1 (single-precision)
      Using standard SSE likelihood calculator for division 2 (single-precision)
      Using standard SSE likelihood calculator for division 3 (single-precision)
      Initializing invariable-site conditional likelihoods

      Initial log likelihoods and log prior probs for run 1:
         Chain 1 -- -2381.872884 -- -24.557203
         Chain 2 -- -2337.794909 -- -24.557203
         Chain 3 -- -2417.491552 -- -24.557203
         Chain 4 -- -2317.533040 -- -24.557203

      Initial log likelihoods and log prior probs for run 2:
         Chain 1 -- -2427.010183 -- -24.557203
         Chain 2 -- -2418.530971 -- -24.557203
         Chain 3 -- -2376.712627 -- -24.557203
         Chain 4 -- -2380.195235 -- -24.557203


      Using a relative burnin of 25.0 % for diagnostics

      Chain results (1000000 generations requested):

          0 -- [-2381.873] (-2337.795) (-2417.492) (-2317.533) * [-2427.010] (-2418.531) (-2376.713) (-2380.195) 
        500 -- (-1696.433) (-1689.583) [-1688.647] (-1701.240) * (-1710.722) (-1686.472) (-1686.950) [-1691.230] -- 0:00:00
       1000 -- (-1694.017) [-1685.541] (-1685.353) (-1687.032) * (-1689.498) (-1696.037) [-1686.356] (-1690.655) -- 0:00:00
       1500 -- (-1689.234) [-1682.146] (-1681.242) (-1684.433) * (-1685.361) (-1686.813) (-1685.140) [-1687.095] -- 0:00:00
       2000 -- [-1686.534] (-1687.796) (-1677.561) (-1686.028) * (-1693.525) (-1687.602) [-1688.776] (-1686.093) -- 0:00:00
       2500 -- (-1684.256) [-1689.520] (-1677.600) (-1688.457) * (-1691.706) (-1682.943) [-1680.054] (-1685.233) -- 0:00:00
       3000 -- (-1686.692) (-1692.576) (-1671.781) [-1684.222] * (-1686.750) (-1694.009) [-1680.184] (-1680.155) -- 0:00:00
       3500 -- (-1681.691) [-1690.784] (-1680.653) (-1681.725) * (-1675.218) (-1687.962) (-1677.024) [-1677.861] -- 0:04:44
       4000 -- [-1680.891] (-1699.382) (-1676.765) (-1684.559) * (-1680.835) (-1685.923) [-1673.254] (-1682.387) -- 0:04:09
       4500 -- [-1682.292] (-1693.391) (-1685.345) (-1683.350) * (-1678.763) (-1686.036) [-1678.802] (-1672.654) -- 0:03:41
       5000 -- (-1680.364) (-1704.694) (-1672.926) [-1675.309] * (-1679.679) (-1682.939) [-1677.447] (-1675.709) -- 0:03:19

      Average standard deviation of split frequencies: 0.000000

       5500 -- (-1683.249) (-1710.081) [-1683.515] (-1676.491) * (-1680.529) (-1693.271) [-1683.505] (-1692.696) -- 0:03:00
       6000 -- (-1681.032) (-1686.704) [-1682.764] (-1676.374) * [-1676.755] (-1682.361) (-1688.162) (-1689.935) -- 0:02:45
       6500 -- [-1674.278] (-1688.609) (-1680.797) (-1678.170) * (-1678.070) (-1678.578) (-1684.199) [-1679.808] -- 0:02:32
       7000 -- (-1674.791) (-1684.880) [-1678.049] (-1674.149) * (-1680.197) (-1682.782) [-1674.818] (-1675.545) -- 0:02:21
       7500 -- [-1677.674] (-1690.921) (-1678.916) (-1676.746) * (-1676.401) [-1681.841] (-1673.929) (-1680.974) -- 0:02:12
       8000 -- (-1679.994) (-1696.695) [-1681.826] (-1681.084) * (-1683.196) (-1681.736) (-1673.499) [-1682.783] -- 0:02:04
       8500 -- (-1677.605) (-1682.977) (-1681.422) [-1675.267] * (-1678.275) [-1680.940] (-1677.182) (-1687.107) -- 0:03:53
       9000 -- [-1677.239] (-1692.020) (-1688.040) (-1687.057) * (-1679.939) [-1681.168] (-1683.610) (-1675.190) -- 0:03:40
       9500 -- (-1678.756) [-1693.316] (-1680.564) (-1685.438) * [-1676.502] (-1686.535) (-1678.002) (-1692.182) -- 0:03:28
      10000 -- (-1683.098) [-1676.264] (-1672.575) (-1684.303) * [-1681.295] (-1680.511) (-1675.969) (-1682.154) -- 0:03:18

      Average standard deviation of split frequencies: 0.044194

      10500 -- (-1677.536) (-1682.978) [-1677.342] (-1679.499) * (-1680.920) (-1676.777) [-1678.086] (-1696.453) -- 0:03:08
      11000 -- (-1682.834) (-1682.637) [-1680.296] (-1676.643) * (-1677.073) [-1678.581] (-1679.119) (-1682.891) -- 0:02:59
      11500 -- (-1676.978) (-1684.200) (-1671.609) [-1680.298] * [-1679.108] (-1676.922) (-1689.090) (-1682.604) -- 0:02:51
      12000 -- (-1679.952) (-1674.484) (-1681.030) [-1675.753] * (-1671.901) (-1679.866) (-1677.987) [-1673.829] -- 0:02:44
      12500 -- (-1680.900) [-1680.019] (-1683.480) (-1676.033) * [-1679.729] (-1682.541) (-1681.021) (-1671.802) -- 0:02:38
      13000 -- (-1676.183) [-1673.935] (-1674.337) (-1687.641) * [-1672.418] (-1689.321) (-1678.280) (-1681.751) -- 0:03:47
      13500 -- (-1684.435) (-1677.391) [-1674.700] (-1678.009) * (-1672.241) [-1678.120] (-1690.551) (-1686.093) -- 0:03:39
      14000 -- (-1683.266) (-1669.994) [-1673.062] (-1691.013) * (-1690.074) (-1679.941) (-1678.086) [-1681.245] -- 0:03:31
      14500 -- (-1684.766) [-1670.498] (-1678.275) (-1675.265) * (-1675.220) [-1676.892] (-1680.077) (-1684.482) -- 0:03:23
      15000 -- (-1679.317) [-1680.283] (-1679.153) (-1685.211) * (-1685.326) (-1675.860) (-1680.591) [-1679.134] -- 0:03:17

      Average standard deviation of split frequencies: 0.029463

      15500 -- [-1675.684] (-1678.229) (-1678.557) (-1679.310) * (-1678.146) [-1677.237] (-1681.398) (-1682.081) -- 0:03:10
      16000 -- (-1676.416) [-1678.627] (-1675.531) (-1688.342) * [-1679.694] (-1686.810) (-1673.802) (-1678.396) -- 0:03:04
      16500 -- (-1672.199) (-1677.072) (-1685.792) [-1683.420] * (-1678.912) (-1672.917) (-1680.242) [-1675.073] -- 0:02:58
      17000 -- (-1683.451) (-1683.327) [-1672.636] (-1681.014) * (-1677.407) [-1677.606] (-1680.134) (-1677.850) -- 0:02:53
      17500 -- (-1672.818) (-1678.691) [-1674.728] (-1684.009) * (-1674.415) (-1682.948) [-1676.793] (-1677.896) -- 0:02:48
      18000 -- (-1684.949) (-1679.478) [-1674.429] (-1677.420) * (-1681.720) (-1679.555) [-1675.608] (-1677.996) -- 0:03:38
      18500 -- (-1673.532) (-1683.650) [-1671.162] (-1677.723) * (-1681.881) (-1685.699) (-1679.657) [-1678.870] -- 0:03:32
      19000 -- (-1680.130) (-1684.343) [-1670.947] (-1676.941) * (-1689.414) (-1688.558) (-1677.087) [-1674.466] -- 0:03:26
      19500 -- (-1678.944) (-1679.859) (-1673.663) [-1677.837] * (-1675.088) (-1681.443) (-1675.568) [-1674.839] -- 0:03:21
      20000 -- (-1678.324) [-1686.240] (-1674.106) (-1686.540) * [-1672.713] (-1681.871) (-1679.058) (-1684.206) -- 0:03:16

      Average standard deviation of split frequencies: 0.038016

      20500 -- (-1672.396) (-1676.152) (-1674.408) [-1678.699] * (-1676.822) (-1676.926) [-1671.436] (-1674.447) -- 0:03:11
      21000 -- [-1673.596] (-1678.536) (-1679.476) (-1683.523) * (-1673.653) [-1677.389] (-1678.043) (-1676.788) -- 0:03:06
      21500 -- (-1685.144) [-1682.190] (-1677.323) (-1682.061) * (-1676.285) (-1680.813) [-1676.335] (-1685.365) -- 0:03:02
      22000 -- (-1671.149) (-1678.828) [-1673.890] (-1682.373) * (-1678.378) [-1687.179] (-1675.030) (-1680.582) -- 0:02:57
      22500 -- [-1683.721] (-1674.650) (-1678.211) (-1678.740) * (-1677.310) (-1685.555) [-1676.960] (-1682.589) -- 0:03:37
      23000 -- (-1670.624) (-1680.783) (-1681.914) [-1678.646] * (-1676.099) (-1687.029) [-1670.670] (-1674.026) -- 0:03:32
      23500 -- (-1678.445) [-1675.472] (-1672.821) (-1684.171) * [-1675.642] (-1678.468) (-1677.020) (-1680.916) -- 0:03:27
      24000 -- (-1678.904) (-1683.559) [-1677.882] (-1680.872) * (-1686.023) (-1676.781) (-1674.085) [-1675.094] -- 0:03:23
      24500 -- (-1682.890) (-1675.556) (-1687.700) [-1682.655] * (-1687.453) (-1687.454) [-1671.202] (-1685.179) -- 0:03:19
      25000 -- (-1694.355) (-1682.592) (-1677.824) [-1676.074] * [-1677.663] (-1678.180) (-1680.667) (-1673.774) -- 0:03:15

      Average standard deviation of split frequencies: 0.042306

      25500 -- [-1673.698] (-1683.290) (-1672.948) (-1687.775) * (-1675.013) (-1684.996) [-1678.805] (-1677.921) -- 0:03:11
      26000 -- (-1674.353) [-1686.909] (-1675.126) (-1678.461) * (-1680.015) (-1681.572) (-1685.279) [-1686.201] -- 0:03:07
      26500 -- (-1680.586) (-1682.907) [-1678.478] (-1676.432) * [-1680.946] (-1677.088) (-1674.188) (-1677.085) -- 0:03:03
      27000 -- (-1678.067) (-1692.580) (-1684.189) [-1677.593] * (-1688.689) (-1680.095) (-1676.391) [-1675.019] -- 0:03:36
      27500 -- (-1677.029) (-1688.309) (-1684.189) [-1679.142] * (-1676.988) (-1677.936) [-1673.955] (-1678.125) -- 0:03:32
      28000 -- (-1676.314) (-1689.971) [-1685.622] (-1677.182) * (-1673.407) (-1677.238) [-1674.246] (-1677.511) -- 0:03:28
      28500 -- (-1689.082) (-1676.999) [-1682.748] (-1679.854) * [-1671.419] (-1687.703) (-1673.205) (-1681.083) -- 0:03:24
      29000 -- (-1678.654) (-1687.012) [-1676.953] (-1678.395) * (-1679.154) [-1678.470] (-1678.027) (-1682.619) -- 0:03:20
      29500 -- (-1678.429) (-1679.763) [-1675.962] (-1679.986) * [-1687.589] (-1679.351) (-1673.979) (-1685.674) -- 0:03:17
      30000 -- (-1677.462) (-1677.641) [-1673.298] (-1684.936) * [-1678.695] (-1679.869) (-1675.038) (-1681.512) -- 0:03:14

      Average standard deviation of split frequencies: 0.025620

      30500 -- (-1682.387) (-1671.727) [-1675.748] (-1686.106) * (-1679.156) (-1682.246) [-1677.992] (-1680.352) -- 0:03:10
      31000 -- (-1686.198) (-1672.947) [-1671.609] (-1684.523) * [-1684.596] (-1679.418) (-1684.390) (-1679.696) -- 0:03:07
      31500 -- (-1681.004) (-1686.643) [-1678.763] (-1681.459) * (-1673.473) (-1681.698) (-1680.773) [-1676.859] -- 0:03:04
      32000 -- (-1677.006) (-1683.163) (-1678.778) [-1685.612] * [-1679.048] (-1675.437) (-1682.720) (-1685.017) -- 0:03:31
      32500 -- (-1682.567) (-1680.667) (-1689.260) [-1673.031] * (-1678.246) [-1680.705] (-1674.489) (-1680.298) -- 0:03:28
      33000 -- [-1673.526] (-1673.069) (-1678.917) (-1676.610) * [-1676.390] (-1679.614) (-1673.302) (-1674.822) -- 0:03:25
      33500 -- (-1676.984) (-1671.136) [-1678.085] (-1675.554) * (-1685.958) [-1678.552] (-1678.215) (-1677.853) -- 0:03:21
      34000 -- (-1675.143) (-1676.277) (-1673.964) [-1683.118] * (-1673.933) (-1681.732) [-1672.488] (-1679.402) -- 0:03:18
      34500 -- [-1670.946] (-1680.247) (-1674.280) (-1681.784) * (-1672.805) (-1681.942) (-1675.945) [-1681.964] -- 0:03:15
      35000 -- (-1676.099) [-1675.702] (-1693.161) (-1681.533) * (-1683.258) [-1676.444] (-1675.416) (-1680.139) -- 0:03:13

      Average standard deviation of split frequencies: 0.017459

      35500 -- (-1680.295) [-1678.954] (-1680.372) (-1678.492) * (-1677.708) [-1678.850] (-1675.492) (-1684.441) -- 0:03:10
      36000 -- (-1679.478) [-1683.560] (-1685.299) (-1684.590) * (-1674.178) [-1673.838] (-1683.070) (-1677.416) -- 0:03:07
      36500 -- (-1674.596) (-1678.777) (-1680.296) [-1682.450] * (-1680.026) (-1686.320) (-1675.487) [-1673.883] -- 0:03:31
      37000 -- (-1682.681) [-1678.064] (-1671.327) (-1682.801) * (-1676.088) (-1684.134) [-1670.894] (-1674.222) -- 0:03:28
      37500 -- (-1682.883) (-1677.228) [-1679.282] (-1684.794) * (-1675.473) [-1670.037] (-1675.318) (-1671.378) -- 0:03:25
      38000 -- [-1675.835] (-1677.060) (-1688.966) (-1674.448) * (-1678.662) (-1678.080) [-1675.156] (-1675.335) -- 0:03:22
      38500 -- (-1678.926) (-1679.784) (-1681.428) [-1674.899] * (-1685.880) (-1672.949) [-1676.808] (-1678.478) -- 0:03:19
      39000 -- (-1680.470) (-1678.159) (-1678.264) [-1679.009] * (-1680.029) (-1679.480) [-1671.894] (-1683.888) -- 0:03:17
      39500 -- (-1680.075) (-1679.825) [-1675.231] (-1682.247) * [-1675.310] (-1677.121) (-1674.943) (-1687.574) -- 0:03:14
      40000 -- (-1679.858) [-1675.465] (-1674.268) (-1682.579) * (-1677.584) (-1676.588) [-1678.057] (-1685.785) -- 0:03:12

      Average standard deviation of split frequencies: 0.011592

      40500 -- (-1681.227) [-1671.274] (-1670.110) (-1681.192) * (-1676.256) (-1679.752) (-1682.591) [-1680.469] -- 0:03:33
      41000 -- [-1679.557] (-1675.642) (-1675.216) (-1684.804) * (-1678.845) (-1677.999) [-1676.199] (-1692.502) -- 0:03:30
      41500 -- (-1679.252) [-1686.426] (-1672.471) (-1676.394) * (-1682.026) [-1676.200] (-1679.793) (-1685.986) -- 0:03:27
      42000 -- (-1677.106) (-1684.897) [-1683.225] (-1677.763) * (-1680.634) [-1677.393] (-1686.682) (-1683.822) -- 0:03:25
      42500 -- (-1684.589) (-1681.263) [-1680.685] (-1678.854) * (-1679.196) [-1675.133] (-1687.425) (-1679.945) -- 0:03:22
      43000 -- (-1685.027) (-1677.668) [-1686.018] (-1688.026) * (-1684.867) (-1678.559) [-1680.976] (-1681.099) -- 0:03:20
      43500 -- (-1679.135) [-1682.039] (-1676.166) (-1681.121) * (-1676.253) (-1676.600) [-1682.617] (-1678.976) -- 0:03:17
      44000 -- (-1672.878) (-1674.333) [-1671.219] (-1682.922) * (-1674.852) (-1680.243) [-1680.368] (-1677.398) -- 0:03:15
      44500 -- (-1674.890) [-1675.171] (-1680.874) (-1682.820) * [-1676.253] (-1684.895) (-1672.981) (-1675.226) -- 0:03:13
      45000 -- (-1687.893) (-1679.158) [-1680.320] (-1678.656) * [-1679.972] (-1675.362) (-1672.064) (-1676.789) -- 0:03:32

      Average standard deviation of split frequencies: 0.017080

      45500 -- [-1676.831] (-1682.780) (-1682.454) (-1678.154) * (-1679.642) (-1678.239) (-1677.506) [-1672.494] -- 0:03:29
      46000 -- (-1677.207) [-1680.504] (-1684.675) (-1679.871) * (-1679.608) (-1680.032) (-1681.407) [-1674.511] -- 0:03:27
      46500 -- (-1683.093) (-1682.045) (-1691.903) [-1682.992] * (-1678.018) (-1687.080) [-1687.016] (-1677.511) -- 0:03:25
      47000 -- (-1678.931) [-1676.710] (-1686.617) (-1679.026) * (-1681.375) (-1684.100) (-1678.510) [-1672.518] -- 0:03:22
      47500 -- [-1679.823] (-1681.844) (-1688.779) (-1685.480) * (-1681.299) (-1687.472) (-1680.352) [-1674.225] -- 0:03:20
      48000 -- [-1682.079] (-1680.797) (-1681.827) (-1684.676) * (-1681.530) (-1685.544) [-1678.443] (-1683.705) -- 0:03:18
      48500 -- [-1674.932] (-1684.869) (-1674.989) (-1681.299) * [-1678.129] (-1676.887) (-1677.837) (-1676.872) -- 0:03:16
      49000 -- (-1676.990) [-1679.249] (-1672.917) (-1682.974) * [-1675.755] (-1684.069) (-1674.177) (-1676.957) -- 0:03:14
      49500 -- (-1687.788) (-1685.296) [-1676.409] (-1679.854) * [-1679.240] (-1678.793) (-1679.001) (-1678.599) -- 0:03:12
      50000 -- [-1678.375] (-1678.706) (-1684.425) (-1678.335) * (-1680.282) [-1678.414] (-1684.317) (-1681.013) -- 0:03:29

      Average standard deviation of split frequencies: 0.018608

      50500 -- (-1683.957) [-1680.700] (-1677.213) (-1676.889) * [-1677.077] (-1675.919) (-1677.767) (-1681.484) -- 0:03:26
      51000 -- (-1691.019) (-1685.470) (-1682.629) [-1678.379] * [-1689.831] (-1675.404) (-1678.635) (-1691.842) -- 0:03:24
      51500 -- (-1676.203) (-1680.414) (-1683.265) [-1678.683] * (-1683.223) [-1672.448] (-1673.162) (-1680.409) -- 0:03:22
      52000 -- (-1676.677) (-1676.332) [-1675.425] (-1684.338) * (-1682.696) (-1676.695) (-1678.182) [-1680.096] -- 0:03:20
      52500 -- (-1676.477) (-1685.084) (-1677.547) [-1672.875] * (-1697.272) (-1682.964) [-1675.100] (-1678.011) -- 0:03:18
      53000 -- (-1677.285) (-1683.050) [-1678.521] (-1681.459) * (-1682.261) (-1685.044) (-1677.565) [-1682.362] -- 0:03:16
      53500 -- (-1676.525) [-1681.489] (-1676.078) (-1676.619) * (-1697.823) (-1681.507) [-1680.902] (-1675.564) -- 0:03:14
      54000 -- (-1686.167) (-1679.435) [-1681.738] (-1674.101) * (-1686.855) [-1674.804] (-1682.458) (-1679.949) -- 0:03:12
      54500 -- (-1675.622) (-1675.828) [-1679.103] (-1684.241) * (-1689.625) (-1683.335) [-1680.225] (-1672.154) -- 0:03:28
      55000 -- (-1680.137) (-1674.085) [-1677.492] (-1679.760) * (-1685.674) [-1679.240] (-1677.983) (-1682.400) -- 0:03:26

      Average standard deviation of split frequencies: 0.025254

      55500 -- [-1676.024] (-1681.887) (-1675.890) (-1673.797) * (-1680.159) (-1678.220) [-1690.002] (-1682.893) -- 0:03:24
      56000 -- [-1676.318] (-1683.179) (-1676.156) (-1680.753) * (-1678.869) [-1677.992] (-1680.500) (-1681.288) -- 0:03:22
      56500 -- (-1672.139) [-1676.236] (-1680.396) (-1684.927) * (-1675.421) (-1678.921) [-1678.121] (-1684.034) -- 0:03:20
      57000 -- (-1683.841) (-1675.809) [-1674.061] (-1685.119) * (-1683.295) [-1677.893] (-1675.674) (-1682.549) -- 0:03:18
      57500 -- [-1673.465] (-1673.517) (-1676.625) (-1681.035) * (-1677.331) [-1674.630] (-1679.634) (-1676.275) -- 0:03:16
      58000 -- (-1675.991) (-1691.347) [-1674.864] (-1676.493) * (-1682.322) (-1685.397) [-1678.832] (-1683.644) -- 0:03:14
      58500 -- [-1677.929] (-1674.820) (-1675.895) (-1678.349) * (-1676.449) (-1683.682) [-1673.688] (-1678.607) -- 0:03:13
      59000 -- (-1677.237) [-1675.535] (-1676.615) (-1682.824) * (-1691.474) [-1683.032] (-1679.242) (-1685.376) -- 0:03:11
      59500 -- [-1673.462] (-1679.523) (-1677.130) (-1680.701) * (-1693.088) (-1681.343) [-1681.015] (-1673.989) -- 0:03:25
      60000 -- (-1678.455) (-1675.018) [-1678.507] (-1681.563) * (-1686.609) (-1690.021) [-1677.270] (-1685.604) -- 0:03:23

      Average standard deviation of split frequencies: 0.022016

      60500 -- (-1672.196) [-1673.074] (-1678.625) (-1684.133) * (-1679.397) (-1678.970) [-1677.298] (-1677.343) -- 0:03:21
      61000 -- (-1676.682) [-1671.627] (-1677.101) (-1676.037) * (-1687.649) [-1674.022] (-1679.182) (-1682.833) -- 0:03:20
      61500 -- (-1685.476) (-1677.756) (-1676.910) [-1681.475] * (-1677.883) [-1670.747] (-1686.320) (-1682.810) -- 0:03:18
      62000 -- (-1675.403) (-1674.178) [-1678.509] (-1683.906) * (-1675.977) (-1688.476) (-1675.278) [-1675.423] -- 0:03:16
      62500 -- (-1675.543) (-1678.502) [-1678.785] (-1675.684) * [-1679.376] (-1677.973) (-1677.252) (-1683.568) -- 0:03:15
      63000 -- (-1681.122) [-1676.026] (-1673.485) (-1673.953) * (-1677.836) [-1682.313] (-1674.464) (-1674.025) -- 0:03:13
      63500 -- (-1683.213) [-1679.075] (-1676.039) (-1675.840) * (-1677.694) [-1672.657] (-1677.200) (-1678.060) -- 0:03:11
      64000 -- (-1677.383) (-1684.134) (-1680.082) [-1673.057] * [-1674.824] (-1670.920) (-1677.100) (-1682.483) -- 0:03:24
      64500 -- (-1673.914) (-1676.421) (-1686.585) [-1677.766] * [-1676.161] (-1679.431) (-1680.133) (-1682.008) -- 0:03:23
      65000 -- (-1682.993) [-1676.051] (-1678.162) (-1676.493) * (-1676.678) (-1676.013) [-1681.423] (-1675.592) -- 0:03:21

      Average standard deviation of split frequencies: 0.015475

      65500 -- (-1679.890) [-1676.002] (-1676.333) (-1679.491) * [-1672.006] (-1673.917) (-1678.557) (-1678.217) -- 0:03:19
      66000 -- (-1674.264) (-1681.810) (-1672.757) [-1681.256] * (-1684.730) (-1676.744) (-1678.836) [-1683.984] -- 0:03:18
      66500 -- [-1677.031] (-1677.256) (-1682.030) (-1673.799) * (-1676.156) (-1681.339) (-1675.178) [-1678.929] -- 0:03:16
      67000 -- [-1678.061] (-1686.378) (-1689.131) (-1672.713) * (-1674.343) [-1681.010] (-1678.009) (-1679.866) -- 0:03:14
      67500 -- (-1688.521) (-1673.708) (-1676.402) [-1670.520] * [-1673.503] (-1683.957) (-1684.109) (-1678.081) -- 0:03:13
      68000 -- (-1680.660) (-1675.826) (-1680.569) [-1674.592] * (-1677.431) (-1675.782) [-1672.171] (-1676.648) -- 0:03:11
      68500 -- (-1689.863) (-1672.433) [-1673.943] (-1675.651) * (-1674.910) (-1681.111) [-1672.779] (-1677.391) -- 0:03:10
      69000 -- [-1685.308] (-1669.636) (-1674.977) (-1676.765) * (-1674.075) (-1680.560) [-1679.346] (-1676.653) -- 0:03:22
      69500 -- (-1688.164) [-1675.687] (-1680.399) (-1671.596) * (-1679.605) [-1670.848] (-1675.250) (-1679.396) -- 0:03:20
      70000 -- (-1681.368) (-1671.664) (-1682.139) [-1674.283] * (-1674.967) [-1676.612] (-1670.455) (-1676.425) -- 0:03:19

      Average standard deviation of split frequencies: 0.014453

      70500 -- [-1683.040] (-1683.254) (-1681.654) (-1673.586) * (-1681.594) [-1674.252] (-1676.853) (-1673.494) -- 0:03:17
      71000 -- (-1685.172) (-1680.466) [-1683.413] (-1675.448) * (-1674.520) [-1675.434] (-168